Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043728.t1 | XP_003622663.1 | 66.3 | 315 | 29 | 1 | 1 | 238 | 1 | 315 | 9.30E-102 | 379.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043728.t1 | Q9XIB5 | 26.5 | 219 | 137 | 7 | 4 | 213 | 18 | 221 | 1.8e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043728.t1 | G7KVV4 | 66.3 | 315 | 29 | 1 | 1 | 238 | 1 | 315 | 6.7e-102 | 379.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043728.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043728.t1 | MTR_7g050560 | 88.152 | 211 | 25 | 0 | 28 | 238 | 105 | 315 | 2.01e-135 | 383 |
| MS.gene043728.t1 | MTR_7g050590 | 70.852 | 223 | 46 | 5 | 22 | 226 | 72 | 293 | 7.07e-104 | 303 |
| MS.gene043728.t1 | MTR_7g050580 | 58.621 | 232 | 66 | 5 | 22 | 238 | 99 | 315 | 1.10e-81 | 247 |
| MS.gene043728.t1 | MTR_3g098790 | 58.559 | 222 | 69 | 5 | 21 | 226 | 98 | 312 | 4.16e-77 | 236 |
| MS.gene043728.t1 | MTR_7g050710 | 60.369 | 217 | 67 | 5 | 28 | 226 | 105 | 320 | 1.60e-76 | 234 |
| MS.gene043728.t1 | MTR_7g050720 | 50.224 | 223 | 83 | 7 | 21 | 215 | 95 | 317 | 1.74e-60 | 193 |
| MS.gene043728.t1 | MTR_1g035460 | 41.441 | 111 | 53 | 5 | 104 | 213 | 188 | 287 | 6.32e-17 | 79.3 |
| MS.gene043728.t1 | MTR_1g108780 | 33.566 | 143 | 81 | 4 | 71 | 213 | 162 | 290 | 1.61e-16 | 78.6 |
| MS.gene043728.t1 | MTR_8g103940 | 41.176 | 119 | 60 | 3 | 95 | 213 | 223 | 331 | 8.06e-15 | 73.6 |
| MS.gene043728.t1 | MTR_1g021270 | 29.885 | 174 | 108 | 5 | 33 | 200 | 173 | 338 | 1.14e-12 | 67.4 |
| MS.gene043728.t1 | MTR_4g068320 | 32.331 | 133 | 82 | 4 | 88 | 218 | 267 | 393 | 2.42e-12 | 66.2 |
| MS.gene043728.t1 | MTR_1g021320 | 33.088 | 136 | 82 | 4 | 76 | 205 | 462 | 594 | 1.53e-11 | 63.9 |
| MS.gene043728.t1 | MTR_1g034240 | 28.571 | 133 | 88 | 3 | 88 | 219 | 272 | 398 | 1.98e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7.4:-52971344 | MS.gene043728:CDS |
| GATCAAAATGTGGTCCTTTA+AGG | 0.170896 | 7.4:+52971295 | None:intergenic |
| TTTCATCAACCACATGAAAT+TGG | 0.203922 | 7.4:-52972203 | MS.gene043728:CDS |
| CGAATCAAGATGACCCTTAA+AGG | 0.279384 | 7.4:-52971309 | MS.gene043728:CDS |
| GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7.4:+52972289 | None:intergenic |
| ATACCACGTTCGTTTGGTTA+TGG | 0.308119 | 7.4:-52971405 | MS.gene043728:CDS |
| CCAAAGAGTTTCAGCCAAAA+AGG | 0.320518 | 7.4:-52972267 | MS.gene043728:CDS |
| ATCTTGATTCGGTACTTTGC+AGG | 0.323314 | 7.4:+52971321 | None:intergenic |
| CGTGGAATACCGATTTCTTA+TGG | 0.327506 | 7.4:-52971815 | MS.gene043728:intron |
| AAGCGGATTGGCTTCAACTC+TGG | 0.399184 | 7.4:+52975044 | None:intergenic |
| GTTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7.4:-52971351 | MS.gene043728:CDS |
| CTTTAAGGGTCATCTTGATT+CGG | 0.426061 | 7.4:+52971310 | None:intergenic |
| TGGTTATGGACACTTTGATT+TGG | 0.426161 | 7.4:-52971391 | MS.gene043728:CDS |
| CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7.4:-52971411 | MS.gene043728:CDS |
| ATCAAAATGTGGTCCTTTAA+GGG | 0.439719 | 7.4:+52971296 | None:intergenic |
| TGCAACTTACCATAAGAAAT+CGG | 0.439757 | 7.4:+52971806 | None:intergenic |
| AGGTCTCCAATGGTCAAAAC+AGG | 0.445132 | 7.4:-52972247 | MS.gene043728:CDS |
| GAAGAAGCTTCTCAAGGATA+AGG | 0.472251 | 7.4:-52971019 | None:intergenic |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.4:-52971246 | MS.gene043728:CDS |
| TTGGCTGAAACTCTTTGGAA+TGG | 0.508092 | 7.4:+52972272 | None:intergenic |
| TCTAAAGATGTGAACAATGA+AGG | 0.509907 | 7.4:+52971182 | None:intergenic |
| GAGAAGCTTCTTCTTTCACT+AGG | 0.513567 | 7.4:+52971029 | None:intergenic |
| CTTGCTCAAAATCTTCATGC+AGG | 0.546116 | 7.4:-52975008 | MS.gene043728:CDS |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.4:+52971847 | None:intergenic |
| TGATCTCTTAACTGGATGGA+AGG | 0.553548 | 7.4:-52971277 | MS.gene043728:CDS |
| AGAAGCTTCTTCTTTCACTA+GGG | 0.565336 | 7.4:+52971030 | None:intergenic |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.4:-52971378 | MS.gene043728:CDS |
| GTGAAAGAAGAAGCTTCTCA+AGG | 0.597138 | 7.4:-52971025 | MS.gene043728:CDS |
| CTATTGCTTCCAATTTCATG+TGG | 0.602047 | 7.4:+52972194 | None:intergenic |
| GTAGCAACTTTGCATCATGC+TGG | 0.604292 | 7.4:-52972143 | MS.gene043728:CDS |
| TGGTTGATGAAATTCAAAAG+AGG | 0.621012 | 7.4:+52972214 | None:intergenic |
| TGGATGGAAGGCATTTGCAA+AGG | 0.649340 | 7.4:-52971265 | MS.gene043728:CDS |
| TGTCATGCGTGCATCATACG+TGG | 0.676375 | 7.4:-52971833 | MS.gene043728:CDS |
| CCAGTTAAGAGATCAAAATG+TGG | 0.685649 | 7.4:+52971285 | None:intergenic |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.4:+52971843 | None:intergenic |
| TGTCCATAACCAAACGAACG+TGG | 0.710196 | 7.4:+52971402 | None:intergenic |
| CATGCTGGCAGAGAGTCCAA+AGG | 0.714363 | 7.4:-52972128 | MS.gene043728:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATAATAAAAAATGTT+AGG | + | chr7.4:52971714-52971733 | None:intergenic | 10.0% |
| !!! | GGTTTTAAAATAAAAAATTA+AGG | + | chr7.4:52973156-52973175 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACAAAGTGTA+TGG | - | chr7.4:52972102-52972121 | MS.gene043728:intron | 15.0% |
| !! | ATTATCACATAAATGTTTAT+TGG | - | chr7.4:52974508-52974527 | MS.gene043728:intron | 15.0% |
| !!! | ACAATTTTTTTTTCTCAAAA+GGG | - | chr7.4:52973330-52973349 | MS.gene043728:intron | 15.0% |
| !!! | TACACTTTGTTTTTTTTTTT+TGG | + | chr7.4:52972102-52972121 | None:intergenic | 15.0% |
| !!! | TGTAAATAAAAATTCAAGTT+TGG | - | chr7.4:52973357-52973376 | MS.gene043728:intron | 15.0% |
| !!! | TTTTTTTTTTGTTGAAAAGT+GGG | + | chr7.4:52971685-52971704 | None:intergenic | 15.0% |
| !! | AAAAATTAGATAGTTCTTCT+TGG | + | chr7.4:52974617-52974636 | None:intergenic | 20.0% |
| !! | AAATTCAATCCATCATAATT+CGG | + | chr7.4:52972763-52972782 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr7.4:52971830-52971849 | None:intergenic | 20.0% |
| !! | AATAATAGAATCTAAGTCAA+AGG | + | chr7.4:52971110-52971129 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr7.4:52971832-52971851 | None:intergenic | 20.0% |
| !! | ACTTGAAATTTACAAAAAGA+TGG | - | chr7.4:52971397-52971416 | MS.gene043728:CDS | 20.0% |
| !! | AGTAATTATTCTGATAAATG+TGG | - | chr7.4:52973495-52973514 | MS.gene043728:intron | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr7.4:52971831-52971850 | None:intergenic | 20.0% |
| !! | TAAAAGTTTCGCTTAAAATT+TGG | - | chr7.4:52972521-52972540 | MS.gene043728:intron | 20.0% |
| !! | TAAAGTTATTCATCATATAG+TGG | + | chr7.4:52972253-52972272 | None:intergenic | 20.0% |
| !! | TACTATCATGTATACTAATT+TGG | - | chr7.4:52973546-52973565 | MS.gene043728:intron | 20.0% |
| !! | TGGAAAATGGAAATTAAATT+TGG | - | chr7.4:52973630-52973649 | MS.gene043728:intron | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.4:52973643-52973662 | MS.gene043728:intron | 20.0% |
| !! | TTAAGGAAAAAAGTTCAAAT+TGG | + | chr7.4:52973139-52973158 | None:intergenic | 20.0% |
| !! | TTTACAAAAGAGATATCAAT+GGG | - | chr7.4:52972269-52972288 | MS.gene043728:CDS | 20.0% |
| !!! | ATATAAATGCTATTTAACAG+GGG | - | chr7.4:52973252-52973271 | MS.gene043728:intron | 20.0% |
| !!! | CTTTTTTTTTTGTTGAAAAG+TGG | + | chr7.4:52971686-52971705 | None:intergenic | 20.0% |
| !!! | GACAATTTTTTTTTCTCAAA+AGG | - | chr7.4:52973329-52973348 | MS.gene043728:intron | 20.0% |
| !!! | GATATAAATGCTATTTAACA+GGG | - | chr7.4:52973251-52973270 | MS.gene043728:intron | 20.0% |
| !!! | GTTTATTTGTTGTTAAATGA+AGG | - | chr7.4:52974729-52974748 | MS.gene043728:intron | 20.0% |
| !!! | TGATATAAATGCTATTTAAC+AGG | - | chr7.4:52973250-52973269 | MS.gene043728:intron | 20.0% |
| ! | AAAAAAAAAATGTCGCTACA+TGG | - | chr7.4:52973105-52973124 | MS.gene043728:intron | 25.0% |
| ! | AAAAAACAAAGGAAGTTTAC+GGG | - | chr7.4:52971966-52971985 | MS.gene043728:intron | 25.0% |
| ! | ACAAATATGTCGAAATTGTT+AGG | - | chr7.4:52972996-52973015 | MS.gene043728:intron | 25.0% |
| ! | ATAATTGAGAAAAATGCACA+TGG | - | chr7.4:52973279-52973298 | MS.gene043728:intron | 25.0% |
| ! | ATCGTAATCACTTGAAAATT+GGG | - | chr7.4:52971534-52971553 | MS.gene043728:intron | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | chr7.4:52971056-52971075 | None:intergenic | 25.0% |
| ! | CTTTACAAAAGAGATATCAA+TGG | - | chr7.4:52972268-52972287 | MS.gene043728:CDS | 25.0% |
| ! | GAAAAAACAAAGGAAGTTTA+CGG | - | chr7.4:52971965-52971984 | MS.gene043728:intron | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | + | chr7.4:52973794-52973813 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | - | chr7.4:52973653-52973672 | MS.gene043728:intron | 25.0% |
| ! | TAAGCAATGTGAAAAAACAA+AGG | - | chr7.4:52971955-52971974 | MS.gene043728:intron | 25.0% |
| ! | TAATTTGACAGTGATTATTG+TGG | + | chr7.4:52971450-52971469 | None:intergenic | 25.0% |
| ! | TACTATGATAGAATTAGACA+AGG | + | chr7.4:52971760-52971779 | None:intergenic | 25.0% |
| ! | TATCGTAATCACTTGAAAAT+TGG | - | chr7.4:52971533-52971552 | MS.gene043728:intron | 25.0% |
| ! | TATTATGACACAAGATTTGT+TGG | - | chr7.4:52971233-52971252 | MS.gene043728:CDS | 25.0% |
| ! | TATTCTGATAAATGTGGTTT+AGG | - | chr7.4:52973501-52973520 | MS.gene043728:intron | 25.0% |
| ! | TGAAATTTACAAAAAGATGG+AGG | - | chr7.4:52971400-52971419 | MS.gene043728:CDS | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7.4:52974144-52974163 | None:intergenic | 25.0% |
| ! | TGTTGTTAAATGAAGGAATT+TGG | - | chr7.4:52974736-52974755 | MS.gene043728:intron | 25.0% |
| !! | AATAACAGAAACGTATTTTC+GGG | + | chr7.4:52972559-52972578 | None:intergenic | 25.0% |
| !! | ACATATTTGTTAGTTGAGAT+AGG | + | chr7.4:52972986-52973005 | None:intergenic | 25.0% |
| !! | CATTTGTCTTTTCTTTTGAT+TGG | - | chr7.4:52974646-52974665 | MS.gene043728:intron | 25.0% |
| !! | GAATAACAGAAACGTATTTT+CGG | + | chr7.4:52972560-52972579 | None:intergenic | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | - | chr7.4:52974144-52974163 | MS.gene043728:intron | 25.0% |
| !! | TTATTCATCATATAGTGGAA+CGG | + | chr7.4:52972248-52972267 | None:intergenic | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.4:52974143-52974162 | MS.gene043728:intron | 25.0% |
| !!! | AATTACTTAGTTTTCCAATC+AGG | + | chr7.4:52973482-52973501 | None:intergenic | 25.0% |
| !!! | ATGTAGCGACATTTTTTTTT+TGG | + | chr7.4:52973106-52973125 | None:intergenic | 25.0% |
| AAACCAGCAAGTAATTAACT+TGG | - | chr7.4:52973176-52973195 | MS.gene043728:intron | 30.0% | |
| AAAGATAAACTCAAAGAGCA+TGG | - | chr7.4:52971338-52971357 | MS.gene043728:CDS | 30.0% | |
| AAATTGCACCATATATCAGA+CGG | - | chr7.4:52972735-52972754 | MS.gene043728:intron | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | - | chr7.4:52974834-52974853 | MS.gene043728:intron | 30.0% | |
| AAGTGATTACGATAGATGTA+TGG | + | chr7.4:52971527-52971546 | None:intergenic | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | - | chr7.4:52973594-52973613 | MS.gene043728:intron | 30.0% | |
| AGGTAATAATGCTACTAACT+AGG | + | chr7.4:52972930-52972949 | None:intergenic | 30.0% | |
| ATCAAAATGTGGTCCTTTAA+GGG | + | chr7.4:52974787-52974806 | None:intergenic | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+TGG | + | chr7.4:52971051-52971070 | None:intergenic | 30.0% | |
| ATTGGACTATCAAAATGGAA+GGG | - | chr7.4:52973223-52973242 | MS.gene043728:intron | 30.0% | |
| CAAGTCCATCATAAAATTAG+TGG | + | chr7.4:52973384-52973403 | None:intergenic | 30.0% | |
| GACACATGAGCTTATATTTA+GGG | - | chr7.4:52973307-52973326 | MS.gene043728:intron | 30.0% | |
| GACATATTGGACTATCAAAA+TGG | - | chr7.4:52973218-52973237 | MS.gene043728:intron | 30.0% | |
| GATATTTGAAAACCAGAAGA+TGG | + | chr7.4:52973729-52973748 | None:intergenic | 30.0% | |
| GGTAATAATGCTACTAACTA+GGG | + | chr7.4:52972929-52972948 | None:intergenic | 30.0% | |
| GTAATAATGCTACTAACTAG+GGG | + | chr7.4:52972928-52972947 | None:intergenic | 30.0% | |
| GTTTCATTAGGCTACAAATT+TGG | + | chr7.4:52973411-52973430 | None:intergenic | 30.0% | |
| TAGCATGTATCATGACATAT+TGG | - | chr7.4:52973205-52973224 | MS.gene043728:intron | 30.0% | |
| TATCCAAGTTAATTACTTGC+TGG | + | chr7.4:52973182-52973201 | None:intergenic | 30.0% | |
| TATTGGACTATCAAAATGGA+AGG | - | chr7.4:52973222-52973241 | MS.gene043728:intron | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | + | chr7.4:52973594-52973613 | None:intergenic | 30.0% | |
| TCTAAAGATGTGAACAATGA+AGG | + | chr7.4:52974901-52974920 | None:intergenic | 30.0% | |
| TGCAACTTACCATAAGAAAT+CGG | + | chr7.4:52974277-52974296 | None:intergenic | 30.0% | |
| TTAGTTGAGATAGGACTTAT+GGG | + | chr7.4:52972977-52972996 | None:intergenic | 30.0% | |
| TTGAGTTAGATTGTTTGTTC+AGG | - | chr7.4:52971145-52971164 | MS.gene043728:CDS | 30.0% | |
| TTGTATAGAGTTTGTCTCTT+TGG | + | chr7.4:52972414-52972433 | None:intergenic | 30.0% | |
| TTTCATCAACCACATGAAAT+TGG | - | chr7.4:52973877-52973896 | MS.gene043728:intron | 30.0% | |
| ! | AAGTTAATTACTTGCTGGTT+TGG | + | chr7.4:52973177-52973196 | None:intergenic | 30.0% |
| ! | AATTTCCATTTTCCACCATT+TGG | + | chr7.4:52973625-52973644 | None:intergenic | 30.0% |
| ! | AGCACTTTTCAGTTATTTGT+GGG | + | chr7.4:52972811-52972830 | None:intergenic | 30.0% |
| ! | TTGGTCCACTAATTTTATGA+TGG | - | chr7.4:52973376-52973395 | MS.gene043728:intron | 30.0% |
| !! | ATTTTGATCTCTTAACTGGA+TGG | - | chr7.4:52974799-52974818 | MS.gene043728:intron | 30.0% |
| !! | TGGTTGATGAAATTCAAAAG+AGG | + | chr7.4:52973869-52973888 | None:intergenic | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7.4:52974702-52974721 | MS.gene043728:intron | 30.0% |
| !!! | TTTTTTGTTGAAAAGTGGGT+GGG | + | chr7.4:52971681-52971700 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTTGAAAAGTGGG+TGG | + | chr7.4:52971682-52971701 | None:intergenic | 30.0% |
| AAATATGGTTAGGAAAGGGT+TGG | - | chr7.4:52973668-52973687 | MS.gene043728:intron | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | + | chr7.4:52974432-52974451 | None:intergenic | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | - | chr7.4:52972358-52972377 | MS.gene043728:intron | 35.0% | |
| ACCAATAACAACTTGATGTG+TGG | - | chr7.4:52972056-52972075 | MS.gene043728:intron | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | + | chr7.4:52972350-52972369 | None:intergenic | 35.0% | |
| AGAAAGGCAACAACAAATCT+AGG | + | chr7.4:52972439-52972458 | None:intergenic | 35.0% | |
| AGAAATATGGAGACTCCAAA+TGG | - | chr7.4:52973607-52973626 | MS.gene043728:intron | 35.0% | |
| AGAAGCTTCTTCTTTCACTA+GGG | + | chr7.4:52975053-52975072 | None:intergenic | 35.0% | |
| AGTGATGGCAAAATATGGTT+AGG | - | chr7.4:52973658-52973677 | MS.gene043728:intron | 35.0% | |
| ATGATAACCGTGTGAAAAAC+GGG | + | chr7.4:52972874-52972893 | None:intergenic | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | + | chr7.4:52974433-52974452 | None:intergenic | 35.0% | |
| CATAAACTCACACACATAAG+TGG | + | chr7.4:52973058-52973077 | None:intergenic | 35.0% | |
| CATGATAACCGTGTGAAAAA+CGG | + | chr7.4:52972875-52972894 | None:intergenic | 35.0% | |
| CCAGTTAAGAGATCAAAATG+TGG | + | chr7.4:52974798-52974817 | None:intergenic | 35.0% | |
| CGACACATGAGCTTATATTT+AGG | - | chr7.4:52973306-52973325 | MS.gene043728:intron | 35.0% | |
| CTATTGCTTCCAATTTCATG+TGG | + | chr7.4:52973889-52973908 | None:intergenic | 35.0% | |
| GAAAGGCAACAACAAATCTA+GGG | + | chr7.4:52972438-52972457 | None:intergenic | 35.0% | |
| GACACAAAATCTGATACCTT+TGG | + | chr7.4:52973971-52973990 | None:intergenic | 35.0% | |
| GATCAAAATGTGGTCCTTTA+AGG | + | chr7.4:52974788-52974807 | None:intergenic | 35.0% | |
| GGCAAAATATGGTTAGGAAA+GGG | - | chr7.4:52973664-52973683 | MS.gene043728:intron | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | chr7.4:52974286-52974305 | MS.gene043728:intron | 35.0% | |
| GTCAGATATGTTCATTTACC+TGG | + | chr7.4:52971379-52971398 | None:intergenic | 35.0% | |
| GTTAGTTGAGATAGGACTTA+TGG | + | chr7.4:52972978-52972997 | None:intergenic | 35.0% | |
| TAGCTATCATAATACTCCCT+CGG | + | chr7.4:52971993-52972012 | None:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | chr7.4:52974424-52974443 | MS.gene043728:intron | 35.0% | |
| TCATTAGGCTACAAATTTGG+TGG | + | chr7.4:52973408-52973427 | None:intergenic | 35.0% | |
| TGAAACCTGCTACAATAGTT+CGG | + | chr7.4:52974082-52974101 | None:intergenic | 35.0% | |
| TGATTACGATAGATGTATGG+TGG | + | chr7.4:52971524-52971543 | None:intergenic | 35.0% | |
| TGGATCTAGATTACAAAACC+AGG | - | chr7.4:52971358-52971377 | MS.gene043728:CDS | 35.0% | |
| TGGCAAAATATGGTTAGGAA+AGG | - | chr7.4:52973663-52973682 | MS.gene043728:intron | 35.0% | |
| TGGTTATGGACACTTTGATT+TGG | - | chr7.4:52974689-52974708 | MS.gene043728:intron | 35.0% | |
| TTTGACAGTGATTATTGTGG+TGG | + | chr7.4:52971447-52971466 | None:intergenic | 35.0% | |
| ! | CTTTAAGGGTCATCTTGATT+CGG | + | chr7.4:52974773-52974792 | None:intergenic | 35.0% |
| ! | GAGCACTTTTCAGTTATTTG+TGG | + | chr7.4:52972812-52972831 | None:intergenic | 35.0% |
| ! | GGTTAGAAATAGAAAGTGTG+AGG | - | chr7.4:52971267-52971286 | MS.gene043728:CDS | 35.0% |
| ! | TCCACACATCAAGTTGTTAT+TGG | + | chr7.4:52972060-52972079 | None:intergenic | 35.0% |
| !! | AAGAATTTGTTGACCCAGTT+CGG | - | chr7.4:52972187-52972206 | MS.gene043728:CDS | 35.0% |
| !! | AGATTTGTTGGCATAGTTTG+TGG | - | chr7.4:52971245-52971264 | MS.gene043728:CDS | 35.0% |
| !! | CCACATTTTGATCTCTTAAC+TGG | - | chr7.4:52974795-52974814 | MS.gene043728:intron | 35.0% |
| !! | CTCTCGTTGTTTTCTACTTT+TGG | + | chr7.4:52972146-52972165 | None:intergenic | 35.0% |
| !! | GATTTGTTGGCATAGTTTGT+GGG | - | chr7.4:52971246-52971265 | MS.gene043728:CDS | 35.0% |
| !! | TCTCTTTGGAACAAACACTA+GGG | + | chr7.4:52972400-52972419 | None:intergenic | 35.0% |
| !!! | ATCTTTCCTGTTTTGACCAT+TGG | + | chr7.4:52973842-52973861 | None:intergenic | 35.0% |
| AAAACTGAAACCTCCAATCG+TGG | - | chr7.4:52972647-52972666 | MS.gene043728:intron | 40.0% | |
| AAACTCACACACATAAGTGG+AGG | + | chr7.4:52973055-52973074 | None:intergenic | 40.0% | |
| AATATGGAGACTCCAAATGG+TGG | - | chr7.4:52973610-52973629 | MS.gene043728:intron | 40.0% | |
| AATTTCCCAGCTCAAATGGA+GGG | - | chr7.4:52974462-52974481 | MS.gene043728:intron | 40.0% | |
| ACCTTGTATCAGACTAAACC+AGG | + | chr7.4:52972489-52972508 | None:intergenic | 40.0% | |
| AGACTAAACCAGGAGATAGA+GGG | + | chr7.4:52972479-52972498 | None:intergenic | 40.0% | |
| AGAGAATTTCCCAGCTCAAA+TGG | - | chr7.4:52974458-52974477 | MS.gene043728:intron | 40.0% | |
| AGCCTAATGAAACTATGAGC+TGG | - | chr7.4:52973418-52973437 | MS.gene043728:intron | 40.0% | |
| AGGATTGAGTCTCTTGGTTA+CGG | + | chr7.4:52972344-52972363 | None:intergenic | 40.0% | |
| ATAATGCTACTAACTAGGGG+TGG | + | chr7.4:52972925-52972944 | None:intergenic | 40.0% | |
| ATACCACGTTCGTTTGGTTA+TGG | - | chr7.4:52974675-52974694 | MS.gene043728:intron | 40.0% | |
| ATTCGGAACCGTCTGATATA+TGG | + | chr7.4:52972746-52972765 | None:intergenic | 40.0% | |
| ATTTGTGGGTAGAAGTGGTT+TGG | + | chr7.4:52972797-52972816 | None:intergenic | 40.0% | |
| CACCAGCTCATAGTTTCATT+AGG | + | chr7.4:52973423-52973442 | None:intergenic | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | - | chr7.4:52974669-52974688 | MS.gene043728:intron | 40.0% | |
| CAGTTATTTGTGGGTAGAAG+TGG | + | chr7.4:52972802-52972821 | None:intergenic | 40.0% | |
| CCAAAGAGTTTCAGCCAAAA+AGG | - | chr7.4:52973813-52973832 | MS.gene043728:intron | 40.0% | |
| CGAATCAAGATGACCCTTAA+AGG | - | chr7.4:52974771-52974790 | MS.gene043728:intron | 40.0% | |
| CTCTCTCAACAAGAACCAAT+TGG | + | chr7.4:52974442-52974461 | None:intergenic | 40.0% | |
| CTTGCTCAAAATCTTCATGC+AGG | - | chr7.4:52971072-52971091 | MS.gene043728:intron | 40.0% | |
| GAACAAACACTAGGGTTTGA+GGG | + | chr7.4:52972392-52972411 | None:intergenic | 40.0% | |
| GAGAAGCTTCTTCTTTCACT+AGG | + | chr7.4:52975054-52975073 | None:intergenic | 40.0% | |
| GATGATGCCAAGAAAGTTTG+TGG | - | chr7.4:52973584-52973603 | MS.gene043728:intron | 40.0% | |
| GCTGAAACAAGGGTTTAGAA+AGG | + | chr7.4:52972455-52972474 | None:intergenic | 40.0% | |
| GGTTGCAAGTTGTATTGTTG+TGG | + | chr7.4:52971503-52971522 | None:intergenic | 40.0% | |
| GTAGCGACATAGATGAGTAA+AGG | + | chr7.4:52972950-52972969 | None:intergenic | 40.0% | |
| GTGAAAGAAGAAGCTTCTCA+AGG | - | chr7.4:52975055-52975074 | MS.gene043728:CDS | 40.0% | |
| GTTAGGTCAGATGTCATGAT+CGG | - | chr7.4:52973013-52973032 | MS.gene043728:intron | 40.0% | |
| TACTCAATTCGGCGTTAAGT+CGG | - | chr7.4:52973452-52973471 | MS.gene043728:intron | 40.0% | |
| TCACACGGTTATCATGGTTT+CGG | - | chr7.4:52972879-52972898 | MS.gene043728:intron | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | + | chr7.4:52972364-52972383 | None:intergenic | 40.0% | |
| TCCTGGTTTAGTCTGATACA+AGG | - | chr7.4:52972485-52972504 | MS.gene043728:intron | 40.0% | |
| TGATCTCTTAACTGGATGGA+AGG | - | chr7.4:52974803-52974822 | MS.gene043728:intron | 40.0% | |
| TGCATCCTGCTTACTCAATT+CGG | - | chr7.4:52973441-52973460 | MS.gene043728:intron | 40.0% | |
| TTAGGTCAGATGTCATGATC+GGG | - | chr7.4:52973014-52973033 | MS.gene043728:intron | 40.0% | |
| TTCTTTCCATGATGTGTCGA+TGG | - | chr7.4:52974038-52974057 | MS.gene043728:intron | 40.0% | |
| ! | AGACTCCAAATGGTGGAAAA+TGG | - | chr7.4:52973617-52973636 | MS.gene043728:intron | 40.0% |
| ! | CGTTTTTCACACGGTTATCA+TGG | - | chr7.4:52972873-52972892 | MS.gene043728:intron | 40.0% |
| ! | GATTGGAGGTTTCAGTTTTG+AGG | + | chr7.4:52972646-52972665 | None:intergenic | 40.0% |
| ! | TTGACCATTGGAGACCTTTT+TGG | + | chr7.4:52973830-52973849 | None:intergenic | 40.0% |
| ! | TTGGCTGAAACTCTTTGGAA+TGG | + | chr7.4:52973811-52973830 | None:intergenic | 40.0% |
| ! | TTTGAGGGTTGATTCACCTT+GGG | + | chr7.4:52972377-52972396 | None:intergenic | 40.0% |
| !! | ATCTTGATTCGGTACTTTGC+AGG | + | chr7.4:52974762-52974781 | None:intergenic | 40.0% |
| !! | CGTGGAATACCGATTTCTTA+TGG | - | chr7.4:52974265-52974284 | MS.gene043728:intron | 40.0% |
| !! | GTCTCTTTGGAACAAACACT+AGG | + | chr7.4:52972401-52972420 | None:intergenic | 40.0% |
| !!! | CCTTTTTGGCTGAAACTCTT+TGG | + | chr7.4:52973816-52973835 | None:intergenic | 40.0% |
| ACAACTTGATGTGTGGAGCA+AGG | - | chr7.4:52972063-52972082 | MS.gene043728:intron | 45.0% | |
| ACCTGCTACAATAGTTCGGA+AGG | + | chr7.4:52974078-52974097 | None:intergenic | 45.0% | |
| ACTAAACCAGGAGATAGAGG+GGG | + | chr7.4:52972477-52972496 | None:intergenic | 45.0% | |
| ACTCAATTCGGCGTTAAGTC+GGG | - | chr7.4:52973453-52973472 | MS.gene043728:intron | 45.0% | |
| AGGTCAATTTGGACCGAACT+GGG | + | chr7.4:52972203-52972222 | None:intergenic | 45.0% | |
| AGGTCTCCAATGGTCAAAAC+AGG | - | chr7.4:52973833-52973852 | MS.gene043728:intron | 45.0% | |
| CAACTTGATGTGTGGAGCAA+GGG | - | chr7.4:52972064-52972083 | MS.gene043728:intron | 45.0% | |
| CAGACGGTTCCGAATTATGA+TGG | - | chr7.4:52972751-52972770 | MS.gene043728:intron | 45.0% | |
| CAGACTAAACCAGGAGATAG+AGG | + | chr7.4:52972480-52972499 | None:intergenic | 45.0% | |
| CCTGCTACAATAGTTCGGAA+GGG | + | chr7.4:52974077-52974096 | None:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7.4:52974236-52974255 | None:intergenic | 45.0% | |
| CTTCATCCATCGACACATCA+TGG | + | chr7.4:52974047-52974066 | None:intergenic | 45.0% | |
| GAATTTCCCAGCTCAAATGG+AGG | - | chr7.4:52974461-52974480 | MS.gene043728:intron | 45.0% | |
| GACTAAACCAGGAGATAGAG+GGG | + | chr7.4:52972478-52972497 | None:intergenic | 45.0% | |
| GCTGGGATTTGGGTAGAATT+AGG | + | chr7.4:52972315-52972334 | None:intergenic | 45.0% | |
| GGAACAAACACTAGGGTTTG+AGG | + | chr7.4:52972393-52972412 | None:intergenic | 45.0% | |
| GGATTGAGTCTCTTGGTTAC+GGG | + | chr7.4:52972343-52972362 | None:intergenic | 45.0% | |
| GGTCCAAATTGACCTAGTCT+GGG | - | chr7.4:52972208-52972227 | MS.gene043728:CDS | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | - | chr7.4:52973937-52973956 | MS.gene043728:intron | 45.0% | |
| GTCCAAATTGACCTAGTCTG+GGG | - | chr7.4:52972209-52972228 | MS.gene043728:CDS | 45.0% | |
| TAACGCCGAATTGAGTAAGC+AGG | + | chr7.4:52973449-52973468 | None:intergenic | 45.0% | |
| TAGGTCAATTTGGACCGAAC+TGG | + | chr7.4:52972204-52972223 | None:intergenic | 45.0% | |
| TAGGTCAGATGTCATGATCG+GGG | - | chr7.4:52973015-52973034 | MS.gene043728:intron | 45.0% | |
| TCACAGTTAGTCAGCTGCTA+TGG | - | chr7.4:52972698-52972717 | MS.gene043728:intron | 45.0% | |
| TCAGCCAAAAAGGTCTCCAA+TGG | - | chr7.4:52973823-52973842 | MS.gene043728:intron | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7.4:52974240-52974259 | None:intergenic | 45.0% | |
| TGTCCATAACCAAACGAACG+TGG | + | chr7.4:52974681-52974700 | None:intergenic | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | chr7.4:52974316-52974335 | MS.gene043728:intron | 45.0% |
| ! | ACACACATAAGTGGAGGTAC+CGG | + | chr7.4:52973049-52973068 | None:intergenic | 45.0% |
| ! | GAGCATCATTCTCTAGCTCA+TGG | - | chr7.4:52973703-52973722 | MS.gene043728:intron | 45.0% |
| ! | GTTTGAGGGTTGATTCACCT+TGG | + | chr7.4:52972378-52972397 | None:intergenic | 45.0% |
| ! | TGGATTTTTCGTGCCACGAT+GGG | + | chr7.4:52972615-52972634 | None:intergenic | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | - | chr7.4:52974815-52974834 | MS.gene043728:intron | 45.0% |
| !! | TGGGTAGAAGTGGTTTGGTT+CGG | + | chr7.4:52972792-52972811 | None:intergenic | 45.0% |
| !!! | TCAGTTTTGAGGCAAGTCAC+TGG | + | chr7.4:52972635-52972654 | None:intergenic | 45.0% |
| !! | AAAGTAATTAATTTAATTAA+AGG | - | chr7.4:52971635-52971654 | MS.gene043728:intron | 5.0% |
| !! | AAGTAATTAATTTAATTAAA+GGG | - | chr7.4:52971636-52971655 | MS.gene043728:intron | 5.0% |
| !! | TTTAAGAAAAAAATAATAAA+TGG | + | chr7.4:52971803-52971822 | None:intergenic | 5.0% |
| AAAGGAAGTTTACGGGACCG+AGG | - | chr7.4:52971973-52971992 | MS.gene043728:intron | 50.0% | |
| AAGGAAGTTTACGGGACCGA+GGG | - | chr7.4:52971974-52971993 | MS.gene043728:intron | 50.0% | |
| AGATAGAGGGGGCTGAAACA+AGG | + | chr7.4:52972466-52972485 | None:intergenic | 50.0% | |
| AGTCTCTTGGTTACGGGAAG+AGG | + | chr7.4:52972337-52972356 | None:intergenic | 50.0% | |
| CAAGACCCTCCATTTGAGCT+GGG | + | chr7.4:52974470-52974489 | None:intergenic | 50.0% | |
| CCCTTCCGAACTATTGTAGC+AGG | - | chr7.4:52974074-52974093 | MS.gene043728:intron | 50.0% | |
| CGGTCCAAATTGACCTAGTC+TGG | - | chr7.4:52972207-52972226 | MS.gene043728:CDS | 50.0% | |
| CGGTTATCATGGTTTCGGAC+CGG | - | chr7.4:52972884-52972903 | MS.gene043728:intron | 50.0% | |
| CTCCCCAGACTAGGTCAATT+TGG | + | chr7.4:52972214-52972233 | None:intergenic | 50.0% | |
| GATAGAGGGGGCTGAAACAA+GGG | + | chr7.4:52972465-52972484 | None:intergenic | 50.0% | |
| GGTTATCATGGTTTCGGACC+GGG | - | chr7.4:52972885-52972904 | MS.gene043728:intron | 50.0% | |
| TCAAGACCCTCCATTTGAGC+TGG | + | chr7.4:52974471-52974490 | None:intergenic | 50.0% | |
| TGTCATGCGTGCATCATACG+TGG | - | chr7.4:52974247-52974266 | MS.gene043728:intron | 50.0% | |
| ! | CTGGATTTTTCGTGCCACGA+TGG | + | chr7.4:52972616-52972635 | None:intergenic | 50.0% |
| ! | GGATTTTTCGTGCCACGATG+GGG | + | chr7.4:52972614-52972633 | None:intergenic | 50.0% |
| ! | TCTAGCTCATGGCCATCTTC+TGG | - | chr7.4:52973714-52973733 | MS.gene043728:intron | 50.0% |
| !! | AAGCGGATTGGCTTCAACTC+TGG | + | chr7.4:52971039-52971058 | None:intergenic | 50.0% |
| !! | ACACATAAGTGGAGGTACCG+GGG | + | chr7.4:52973047-52973066 | None:intergenic | 50.0% |
| !! | CACACATAAGTGGAGGTACC+GGG | + | chr7.4:52973048-52973067 | None:intergenic | 50.0% |
| AAGCAACGTGCCACGATTGG+AGG | + | chr7.4:52972660-52972679 | None:intergenic | 55.0% | |
| ACGGGAAGAGGCTGGGATTT+GGG | + | chr7.4:52972325-52972344 | None:intergenic | 55.0% | |
| CAGAAGCAACGTGCCACGAT+TGG | + | chr7.4:52972663-52972682 | None:intergenic | 55.0% | |
| CATGATCGGGGTTCAAACCC+CGG | - | chr7.4:52973027-52973046 | MS.gene043728:intron | 55.0% | |
| CATGCTGGCAGAGAGTCCAA+AGG | - | chr7.4:52973952-52973971 | MS.gene043728:intron | 55.0% | |
| CTTGGTTACGGGAAGAGGCT+GGG | + | chr7.4:52972332-52972351 | None:intergenic | 55.0% | |
| GCGGGTGGTTTCGGATAATC+GGG | + | chr7.4:52972844-52972863 | None:intergenic | 55.0% | |
| GGCGGGTGGTTTCGGATAAT+CGG | + | chr7.4:52972845-52972864 | None:intergenic | 55.0% | |
| GTTAAGTCGGGCGTCCTGAT+TGG | - | chr7.4:52973465-52973484 | MS.gene043728:intron | 55.0% | |
| TACGGGAAGAGGCTGGGATT+TGG | + | chr7.4:52972326-52972345 | None:intergenic | 55.0% | |
| TCTTGGTTACGGGAAGAGGC+TGG | + | chr7.4:52972333-52972352 | None:intergenic | 55.0% | |
| TTTCAGCCCCCTCTATCTCC+TGG | - | chr7.4:52972468-52972487 | MS.gene043728:intron | 55.0% | |
| !! | CCGACAGCCCGTTTTTCACA+CGG | - | chr7.4:52972864-52972883 | MS.gene043728:intron | 55.0% |
| !! | CCGTGTGAAAAACGGGCTGT+CGG | + | chr7.4:52972867-52972886 | None:intergenic | 55.0% |
| !! | CGTGTGAAAAACGGGCTGTC+GGG | + | chr7.4:52972866-52972885 | None:intergenic | 55.0% |
| ATGGTTTCGGACCGGGTCAC+TGG | - | chr7.4:52972892-52972911 | MS.gene043728:intron | 60.0% | |
| GACTGCTCTCTCCCCAGACT+AGG | + | chr7.4:52972223-52972242 | None:intergenic | 60.0% | |
| !! | GTGAAAAACGGGCTGTCGGG+CGG | + | chr7.4:52972863-52972882 | None:intergenic | 60.0% |
| !! | TGAAAAACGGGCTGTCGGGC+GGG | + | chr7.4:52972862-52972881 | None:intergenic | 60.0% |
| AACGTGGCACGATGGTGCGC+TGG | + | chr7.4:52972587-52972606 | None:intergenic | 65.0% | |
| GTGGCCAACCACCAGTGACC+CGG | + | chr7.4:52972906-52972925 | None:intergenic | 65.0% | |
| GTTTCGGACCGGGTCACTGG+TGG | - | chr7.4:52972895-52972914 | MS.gene043728:intron | 65.0% | |
| CGGACCGGGTCACTGGTGGT+TGG | - | chr7.4:52972899-52972918 | MS.gene043728:intron | 70.0% | |
| GCCACGATGGGGTCGCAACG+TGG | + | chr7.4:52972603-52972622 | None:intergenic | 70.0% | |
| GCCACGTTGCGACCCCATCG+TGG | - | chr7.4:52972599-52972618 | MS.gene043728:intron | 70.0% | |
| GGCTGTCGGGCGGGTGGTTT+CGG | + | chr7.4:52972853-52972872 | None:intergenic | 70.0% | |
| GGGGTCGCAACGTGGCACGA+TGG | + | chr7.4:52972595-52972614 | None:intergenic | 70.0% | |
| !! | AAAACGGGCTGTCGGGCGGG+TGG | + | chr7.4:52972859-52972878 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52971021 | 52975081 | 52971021 | ID=MS.gene043728 |
| chr7.4 | mRNA | 52971021 | 52975081 | 52971021 | ID=MS.gene043728.t1;Parent=MS.gene043728 |
| chr7.4 | exon | 52975001 | 52975081 | 52975001 | ID=MS.gene043728.t1.exon1;Parent=MS.gene043728.t1 |
| chr7.4 | CDS | 52975001 | 52975081 | 52975001 | ID=cds.MS.gene043728.t1;Parent=MS.gene043728.t1 |
| chr7.4 | exon | 52972129 | 52972315 | 52972129 | ID=MS.gene043728.t1.exon2;Parent=MS.gene043728.t1 |
| chr7.4 | CDS | 52972129 | 52972315 | 52972129 | ID=cds.MS.gene043728.t1;Parent=MS.gene043728.t1 |
| chr7.4 | exon | 52971816 | 52971937 | 52971816 | ID=MS.gene043728.t1.exon3;Parent=MS.gene043728.t1 |
| chr7.4 | CDS | 52971816 | 52971937 | 52971816 | ID=cds.MS.gene043728.t1;Parent=MS.gene043728.t1 |
| chr7.4 | exon | 52971142 | 52971430 | 52971142 | ID=MS.gene043728.t1.exon4;Parent=MS.gene043728.t1 |
| chr7.4 | CDS | 52971142 | 52971430 | 52971142 | ID=cds.MS.gene043728.t1;Parent=MS.gene043728.t1 |
| chr7.4 | exon | 52971021 | 52971058 | 52971021 | ID=MS.gene043728.t1.exon5;Parent=MS.gene043728.t1 |
| chr7.4 | CDS | 52971021 | 52971058 | 52971021 | ID=cds.MS.gene043728.t1;Parent=MS.gene043728.t1 |
| Gene Sequence |
| Protein sequence |
