Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043729.t1 | AES78884.2 | 86 | 293 | 39 | 2 | 1 | 292 | 2 | 293 | 1.50E-136 | 495.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043729.t1 | Q8L3W1 | 28.4 | 310 | 168 | 7 | 1 | 265 | 22 | 322 | 9.7e-20 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043729.t1 | G7KVV7 | 86.0 | 293 | 39 | 2 | 1 | 292 | 2 | 293 | 1.1e-136 | 495.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043729.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043729.t1 | MTR_7g050590 | 86.007 | 293 | 39 | 2 | 1 | 292 | 2 | 293 | 0.0 | 503 |
| MS.gene043729.t1 | MTR_7g050560 | 72.937 | 303 | 63 | 3 | 1 | 302 | 29 | 313 | 1.45e-154 | 434 |
| MS.gene043729.t1 | MTR_7g050580 | 68.874 | 302 | 77 | 3 | 1 | 302 | 29 | 313 | 1.83e-142 | 404 |
| MS.gene043729.t1 | MTR_7g050710 | 67.905 | 296 | 87 | 5 | 1 | 292 | 29 | 320 | 5.76e-138 | 393 |
| MS.gene043729.t1 | MTR_3g098790 | 67.577 | 293 | 85 | 4 | 1 | 292 | 29 | 312 | 1.21e-132 | 379 |
| MS.gene043729.t1 | MTR_7g050720 | 64.407 | 295 | 88 | 8 | 1 | 281 | 26 | 317 | 7.92e-124 | 357 |
| MS.gene043729.t1 | MTR_1g035460 | 35.849 | 318 | 165 | 10 | 1 | 296 | 2 | 302 | 1.47e-52 | 177 |
| MS.gene043729.t1 | MTR_8g103940 | 36.177 | 293 | 157 | 8 | 1 | 279 | 55 | 331 | 1.02e-45 | 161 |
| MS.gene043729.t1 | MTR_1g108780 | 33.898 | 295 | 162 | 9 | 1 | 279 | 13 | 290 | 1.20e-44 | 157 |
| MS.gene043729.t1 | MTR_7g050640 | 72.941 | 85 | 23 | 0 | 1 | 85 | 29 | 113 | 8.65e-38 | 130 |
| MS.gene043729.t1 | MTR_5g044670 | 30.272 | 294 | 184 | 5 | 1 | 287 | 32 | 311 | 5.82e-37 | 134 |
| MS.gene043729.t1 | MTR_3g061320 | 33.808 | 281 | 156 | 10 | 1 | 278 | 26 | 279 | 3.59e-34 | 126 |
| MS.gene043729.t1 | MTR_3g061350 | 29.787 | 282 | 171 | 6 | 1 | 278 | 26 | 284 | 1.34e-30 | 116 |
| MS.gene043729.t1 | MTR_3g061370 | 30.742 | 283 | 167 | 7 | 1 | 278 | 23 | 281 | 4.48e-30 | 115 |
| MS.gene043729.t1 | MTR_3g061340 | 29.749 | 279 | 165 | 8 | 1 | 278 | 26 | 274 | 4.69e-29 | 112 |
| MS.gene043729.t1 | MTR_1g035570 | 31.724 | 290 | 164 | 9 | 1 | 279 | 21 | 287 | 2.78e-26 | 107 |
| MS.gene043729.t1 | MTR_1g035640 | 31.802 | 283 | 162 | 10 | 1 | 277 | 21 | 278 | 2.68e-25 | 105 |
| MS.gene043729.t1 | MTR_4g119990 | 30.000 | 290 | 182 | 9 | 1 | 278 | 31 | 311 | 1.04e-24 | 102 |
| MS.gene043729.t1 | MTR_3g061310 | 30.282 | 284 | 168 | 11 | 1 | 278 | 26 | 285 | 1.45e-24 | 100 |
| MS.gene043729.t1 | MTR_6g043890 | 27.414 | 321 | 198 | 10 | 1 | 302 | 31 | 335 | 5.96e-24 | 100 |
| MS.gene043729.t1 | MTR_3g061330 | 51.807 | 83 | 40 | 0 | 1 | 83 | 26 | 108 | 1.85e-23 | 97.1 |
| MS.gene043729.t1 | MTR_3g061290 | 50.602 | 83 | 41 | 0 | 1 | 83 | 26 | 108 | 4.57e-22 | 92.0 |
| MS.gene043729.t1 | MTR_1g035620 | 26.786 | 280 | 175 | 5 | 1 | 277 | 25 | 277 | 4.68e-22 | 95.5 |
| MS.gene043729.t1 | MTR_1g050845 | 28.315 | 279 | 160 | 7 | 1 | 277 | 25 | 265 | 7.11e-22 | 96.3 |
| MS.gene043729.t1 | MTR_1g021270 | 25.723 | 311 | 181 | 8 | 1 | 265 | 31 | 337 | 5.15e-21 | 93.6 |
| MS.gene043729.t1 | MTR_5g070440 | 25.939 | 293 | 148 | 7 | 1 | 282 | 37 | 271 | 3.60e-20 | 88.6 |
| MS.gene043729.t1 | MTR_6g061070 | 28.716 | 296 | 185 | 8 | 1 | 278 | 34 | 321 | 1.44e-19 | 89.0 |
| MS.gene043729.t1 | MTR_3g005490 | 25.442 | 283 | 153 | 7 | 1 | 282 | 37 | 262 | 2.15e-18 | 83.2 |
| MS.gene043729.t1 | MTR_3g005440 | 35.398 | 113 | 67 | 1 | 1 | 113 | 36 | 142 | 2.85e-18 | 85.1 |
| MS.gene043729.t1 | MTR_3g005440 | 34.653 | 101 | 63 | 1 | 4 | 104 | 261 | 358 | 3.71e-11 | 63.9 |
| MS.gene043729.t1 | MTR_3g005480 | 24.399 | 291 | 147 | 8 | 1 | 282 | 37 | 263 | 4.95e-18 | 82.4 |
| MS.gene043729.t1 | MTR_1g034240 | 42.169 | 83 | 48 | 0 | 1 | 83 | 23 | 105 | 5.09e-18 | 84.3 |
| MS.gene043729.t1 | MTR_4g068320 | 42.697 | 89 | 49 | 1 | 1 | 87 | 22 | 110 | 8.76e-18 | 83.6 |
| MS.gene043729.t1 | MTR_3g005420 | 25.532 | 282 | 163 | 7 | 1 | 282 | 305 | 539 | 3.25e-17 | 82.0 |
| MS.gene043729.t1 | MTR_3g005420 | 30.952 | 126 | 76 | 3 | 1 | 121 | 56 | 175 | 6.09e-13 | 69.3 |
| MS.gene043729.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 1 | 86 | 29 | 114 | 1.35e-16 | 80.1 |
| MS.gene043729.t1 | MTR_3g005495 | 28.364 | 275 | 128 | 9 | 1 | 271 | 259 | 468 | 3.94e-16 | 79.0 |
| MS.gene043729.t1 | MTR_3g005460 | 26.642 | 274 | 144 | 8 | 1 | 265 | 278 | 503 | 1.77e-16 | 80.1 |
| MS.gene043729.t1 | MTR_3g005460 | 35.000 | 120 | 64 | 3 | 1 | 118 | 41 | 148 | 3.28e-16 | 79.0 |
| MS.gene043729.t1 | MTR_1g035520 | 29.167 | 288 | 174 | 10 | 1 | 264 | 88 | 369 | 5.96e-16 | 77.8 |
| MS.gene043729.t1 | MTR_3g061220 | 40.964 | 83 | 36 | 1 | 1 | 83 | 26 | 95 | 1.38e-14 | 69.3 |
| MS.gene043729.t1 | MTR_1g021350 | 24.823 | 282 | 186 | 5 | 1 | 265 | 37 | 309 | 3.67e-14 | 72.4 |
| MS.gene043729.t1 | MTR_1g035480 | 45.783 | 83 | 42 | 2 | 1 | 83 | 33 | 112 | 4.97e-14 | 69.3 |
| MS.gene043729.t1 | MTR_1g035510 | 45.783 | 83 | 42 | 2 | 1 | 83 | 2 | 81 | 6.30e-14 | 70.1 |
| MS.gene043729.t1 | MTR_1g034210 | 38.554 | 83 | 49 | 1 | 1 | 83 | 23 | 103 | 8.98e-14 | 70.9 |
| MS.gene043729.t1 | MTR_1g034210 | 38.554 | 83 | 49 | 1 | 1 | 83 | 23 | 103 | 1.37e-13 | 70.9 |
| MS.gene043729.t1 | MTR_1g035650 | 30.366 | 191 | 116 | 5 | 1 | 190 | 25 | 199 | 1.38e-13 | 68.9 |
| MS.gene043729.t1 | MTR_3g005420 | 30.952 | 126 | 76 | 3 | 1 | 121 | 37 | 156 | 7.31e-13 | 68.9 |
| MS.gene043729.t1 | MTR_1g033740 | 26.829 | 164 | 105 | 4 | 1 | 164 | 38 | 186 | 1.93e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043729.t1 | AT3G18990 | 28.399 | 331 | 175 | 9 | 1 | 282 | 22 | 339 | 4.58e-27 | 108 |
| MS.gene043729.t1 | AT3G18990 | 28.875 | 329 | 170 | 10 | 1 | 279 | 22 | 336 | 7.04e-27 | 108 |
| MS.gene043729.t1 | AT4G01580 | 46.591 | 88 | 47 | 0 | 1 | 88 | 46 | 133 | 2.62e-19 | 84.3 |
| MS.gene043729.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 1 | 88 | 46 | 133 | 3.64e-18 | 81.3 |
| MS.gene043729.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 1 | 88 | 46 | 133 | 4.19e-18 | 81.3 |
| MS.gene043729.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 1 | 88 | 9 | 96 | 4.51e-18 | 80.5 |
| MS.gene043729.t1 | AT1G49475 | 39.000 | 100 | 60 | 1 | 1 | 100 | 50 | 148 | 5.67e-18 | 80.5 |
Find 45 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAGTGGAAATTAAATT+TGG | 0.244297 | 7.4:-53001263 | MS.gene043729:CDS |
| TATTTCTGCACAAACTTTCT+TGG | 0.265809 | 7.4:+53001331 | None:intergenic |
| TTGCAGCAGCTAAAGCTAAT+AGG | 0.287785 | 7.4:-53001072 | MS.gene043729:CDS |
| GAAAGGGTAATTTATCTCTA+AGG | 0.313872 | 7.4:+53001102 | None:intergenic |
| AATTTCCACTTTGCACCATT+TGG | 0.355722 | 7.4:+53001271 | None:intergenic |
| AGGTGTTAAATAAAGGAGTT+TGG | 0.356590 | 7.4:-53000039 | MS.gene043729:CDS |
| CTTCATCAACCACGTGAAAT+CGG | 0.381082 | 7.4:-53000968 | MS.gene043729:CDS |
| TGGCAAAATATGGTTTGAAA+AGG | 0.393696 | 7.4:-53001230 | MS.gene043729:CDS |
| CTTTAGCTGCTGCAACCCTT+TGG | 0.398095 | 7.4:+53001080 | None:intergenic |
| GGACTGCAAGGCTTTCTATC+AGG | 0.412415 | 7.4:-53000018 | MS.gene043729:CDS |
| ATAAAAGAAGAAGCTGCTTA+AGG | 0.430564 | 7.4:-52999717 | None:intergenic |
| CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7.4:-53000109 | MS.gene043729:CDS |
| AGGTTTATTTCCTTGATCAT+TGG | 0.433965 | 7.4:+53001045 | None:intergenic |
| TGGTAATAGACACTTTCATT+TGG | 0.438376 | 7.4:-53000089 | MS.gene043729:CDS |
| AAATATGGTTTGAAAAGGGT+TGG | 0.440218 | 7.4:-53001225 | MS.gene043729:CDS |
| TGCAGCAGCTAAAGCTAATA+GGG | 0.447144 | 7.4:-53001071 | MS.gene043729:CDS |
| TCGCATTTGATAAACCTTCT+CGG | 0.457980 | 7.4:+53001308 | None:intergenic |
| GATATTTGAAAAGCAGAAGA+TGG | 0.469802 | 7.4:+53001167 | None:intergenic |
| CTGCTGCAACCCTTTGGAAA+GGG | 0.490756 | 7.4:+53001086 | None:intergenic |
| GGCAAAATATGGTTTGAAAA+GGG | 0.493730 | 7.4:-53001229 | MS.gene043729:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.497009 | 7.4:-53001286 | MS.gene043729:CDS |
| GATAAATTACCCTTTCCAAA+GGG | 0.497908 | 7.4:-53001095 | MS.gene043729:CDS |
| TAGAGTTGGAAAATTGCAAA+AGG | 0.507000 | 7.4:-53000930 | MS.gene043729:CDS |
| GAGGACAATAAATTGAAAGT+TGG | 0.509934 | 7.4:-52999941 | MS.gene043729:CDS |
| CAAGGAAATAAACCTCCAAA+TGG | 0.511352 | 7.4:-53001037 | MS.gene043729:CDS |
| AATAGGGTCTCCAATGATCA+AGG | 0.514757 | 7.4:-53001055 | MS.gene043729:CDS |
| ATAAAGGAGTTTGGACTGCA+AGG | 0.517740 | 7.4:-53000030 | MS.gene043729:CDS |
| GCTGCTGCAACCCTTTGGAA+AGG | 0.547388 | 7.4:+53001085 | None:intergenic |
| AGATAAATTACCCTTTCCAA+AGG | 0.557884 | 7.4:-53001096 | MS.gene043729:CDS |
| ACGTGGTTGATGAAGTTCAA+AGG | 0.562344 | 7.4:+53000976 | None:intergenic |
| GGACTAAAATTTGAACTCAC+AGG | 0.563798 | 7.4:-52999983 | MS.gene043729:CDS |
| TTTCATTTGGATAAGAAGAG+AGG | 0.564366 | 7.4:-53000076 | MS.gene043729:CDS |
| GAGTATCACTCTCTAGCTCA+TGG | 0.575939 | 7.4:-53001190 | MS.gene043729:CDS |
| TGAACTCACAGGTGGATGGA+AGG | 0.586048 | 7.4:-52999972 | MS.gene043729:CDS |
| AATTTGAACTCACAGGTGGA+TGG | 0.587922 | 7.4:-52999976 | MS.gene043729:CDS |
| TCTATCAGGAAGGACAGTAA+AGG | 0.599979 | 7.4:-53000004 | MS.gene043729:CDS |
| CTACTGCTTCCGATTTCACG+TGG | 0.606234 | 7.4:+53000959 | None:intergenic |
| CTAAAATTTGAACTCACAGG+TGG | 0.610484 | 7.4:-52999980 | MS.gene043729:CDS |
| TGCAAGGCTTTCTATCAGGA+AGG | 0.610588 | 7.4:-53000014 | MS.gene043729:CDS |
| AGACTCCAAATGGTGCAAAG+TGG | 0.616755 | 7.4:-53001276 | MS.gene043729:CDS |
| TTTGTGCAGAAATACCGAGA+AGG | 0.623919 | 7.4:-53001322 | MS.gene043729:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.4:-52999960 | MS.gene043729:CDS |
| TGCATGCATGACAACAACAA+AGG | 0.674317 | 7.4:+53000696 | None:intergenic |
| CATACTGACAGAGAATCCAA+AGG | 0.719746 | 7.4:-53000893 | MS.gene043729:intron |
| TGTCTATTACCAAACGAACG+TGG | 0.725731 | 7.4:+53000100 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAACTATTTAATATGA+AGG | + | chr7.4:53000858-53000877 | None:intergenic | 10.0% |
| !! | AAATATGTATTAATCAAGAT+CGG | + | chr7.4:53000692-53000711 | None:intergenic | 15.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.4:52999803-52999822 | MS.gene043729:intron | 20.0% |
| !!! | CATTTGTAATTTCTTTTACT+TGG | - | chr7.4:53000921-53000940 | MS.gene043729:CDS | 20.0% |
| ! | AGATGAAAAGAGAAAGAAAA+CGG | + | chr7.4:53000716-53000735 | None:intergenic | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:52999767-52999786 | MS.gene043729:intron | 25.0% |
| ! | ATATTTCATTGTAACTTACC+AGG | + | chr7.4:53000406-53000425 | None:intergenic | 25.0% |
| ! | TAAAAAGTGATGGCAAAATA+TGG | - | chr7.4:52999813-52999832 | MS.gene043729:intron | 25.0% |
| ! | TGCAAAATTGGAACATAATA+AGG | + | chr7.4:53000264-53000283 | None:intergenic | 25.0% |
| ! | TGCAAAGTGGAAATTAAATT+TGG | - | chr7.4:52999790-52999809 | MS.gene043729:intron | 25.0% |
| !! | TATTATGTTCCAATTTTGCA+GGG | - | chr7.4:53000264-53000283 | MS.gene043729:intron | 25.0% |
| !! | TTATTATGTTCCAATTTTGC+AGG | - | chr7.4:53000263-53000282 | MS.gene043729:intron | 25.0% |
| !!! | ACTTAGTTGATTAGTTTGTT+AGG | - | chr7.4:53000552-53000571 | MS.gene043729:intron | 25.0% |
| !!! | CATTTTCAGGTGTTAAATAA+AGG | - | chr7.4:53001007-53001026 | MS.gene043729:CDS | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | chr7.4:52999828-52999847 | MS.gene043729:intron | 30.0% | |
| AAGACACAATCTTATACCTT+TGG | + | chr7.4:53000179-53000198 | None:intergenic | 30.0% | |
| AATCTTTCTCTACTCTTTAC+TGG | - | chr7.4:53000449-53000468 | MS.gene043729:intron | 30.0% | |
| AGATAAATTACCCTTTCCAA+AGG | - | chr7.4:52999957-52999976 | MS.gene043729:CDS | 30.0% | |
| AGGTGTTAAATAAAGGAGTT+TGG | - | chr7.4:53001014-53001033 | MS.gene043729:CDS | 30.0% | |
| AGGTTTATTTCCTTGATCAT+TGG | + | chr7.4:53000011-53000030 | None:intergenic | 30.0% | |
| GAAAGGGTAATTTATCTCTA+AGG | + | chr7.4:52999954-52999973 | None:intergenic | 30.0% | |
| GAGGACAATAAATTGAAAGT+TGG | - | chr7.4:53001112-53001131 | MS.gene043729:CDS | 30.0% | |
| GATAAATTACCCTTTCCAAA+GGG | - | chr7.4:52999958-52999977 | MS.gene043729:CDS | 30.0% | |
| GATATTTGAAAAGCAGAAGA+TGG | + | chr7.4:52999889-52999908 | None:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | chr7.4:52999824-52999843 | MS.gene043729:intron | 30.0% | |
| GTAAAGAGTAGAGAAAGATT+TGG | + | chr7.4:53000449-53000468 | None:intergenic | 30.0% | |
| TAGAGTTGGAAAATTGCAAA+AGG | - | chr7.4:53000123-53000142 | MS.gene043729:intron | 30.0% | |
| TATTTGGAAAGATTCTGCAT+AGG | + | chr7.4:53001319-53001338 | None:intergenic | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | chr7.4:52999823-52999842 | MS.gene043729:intron | 30.0% | |
| TGGTAATAGACACTTTCATT+TGG | - | chr7.4:53000964-53000983 | MS.gene043729:CDS | 30.0% | |
| TTTCATTTGGATAAGAAGAG+AGG | - | chr7.4:53000977-53000996 | MS.gene043729:CDS | 30.0% | |
| ! | AAGCAGCTTCTTCTTTTATT+TGG | + | chr7.4:53001335-53001354 | None:intergenic | 30.0% |
| ! | TAATCATGATGTCACTTGTT+AGG | + | chr7.4:53000795-53000814 | None:intergenic | 30.0% |
| ! | TATTTCTGCACAAACTTTCT+TGG | + | chr7.4:52999725-52999744 | None:intergenic | 30.0% |
| !! | TAGTTTGTTAGGTGATTGAT+AGG | - | chr7.4:53000563-53000582 | MS.gene043729:intron | 30.0% |
| AATTTCCACTTTGCACCATT+TGG | + | chr7.4:52999785-52999804 | None:intergenic | 35.0% | |
| AGTGTTCAACTTCTCAAAGT+AGG | - | chr7.4:53001221-53001240 | MS.gene043729:CDS | 35.0% | |
| CAAGGAAATAAACCTCCAAA+TGG | - | chr7.4:53000016-53000035 | MS.gene043729:CDS | 35.0% | |
| CTAAAATTTGAACTCACAGG+TGG | - | chr7.4:53001073-53001092 | MS.gene043729:CDS | 35.0% | |
| GGACTAAAATTTGAACTCAC+AGG | - | chr7.4:53001070-53001089 | MS.gene043729:CDS | 35.0% | |
| TATGCACTAAGAGTTGTTAG+AGG | - | chr7.4:53000525-53000544 | MS.gene043729:intron | 35.0% | |
| TCGCATTTGATAAACCTTCT+CGG | + | chr7.4:52999748-52999767 | None:intergenic | 35.0% | |
| TTGAATAACGCTTGAAGAGA+GGG | - | chr7.4:53000620-53000639 | MS.gene043729:intron | 35.0% | |
| TTTGAATAACGCTTGAAGAG+AGG | - | chr7.4:53000619-53000638 | MS.gene043729:intron | 35.0% | |
| ! | CTACAATTTTCACCATTTGG+AGG | + | chr7.4:53000031-53000050 | None:intergenic | 35.0% |
| ! | GAGAGGAGATATTCATTTTC+AGG | - | chr7.4:53000994-53001013 | MS.gene043729:CDS | 35.0% |
| ! | GCTCTACAATTTTCACCATT+TGG | + | chr7.4:53000034-53000053 | None:intergenic | 35.0% |
| !! | CGTTAAACATCGTTTTAACC+TGG | - | chr7.4:53000385-53000404 | MS.gene043729:intron | 35.0% |
| !!! | AGCAGTAGTTGTTTTAGAGT+TGG | - | chr7.4:53000109-53000128 | MS.gene043729:CDS | 35.0% |
| AATAGGGTCTCCAATGATCA+AGG | - | chr7.4:52999998-53000017 | MS.gene043729:CDS | 40.0% | |
| AATTTGAACTCACAGGTGGA+TGG | - | chr7.4:53001077-53001096 | MS.gene043729:CDS | 40.0% | |
| ATAAAGGAGTTTGGACTGCA+AGG | - | chr7.4:53001023-53001042 | MS.gene043729:CDS | 40.0% | |
| CACTTCTTTCCCTGCAAAAT+TGG | + | chr7.4:53000276-53000295 | None:intergenic | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | - | chr7.4:53000944-53000963 | MS.gene043729:CDS | 40.0% | |
| CATACTGACAGAGAATCCAA+AGG | - | chr7.4:53000160-53000179 | MS.gene043729:intron | 40.0% | |
| CTTCATCAACCACGTGAAAT+CGG | - | chr7.4:53000085-53000104 | MS.gene043729:CDS | 40.0% | |
| TCTATCAGGAAGGACAGTAA+AGG | - | chr7.4:53001049-53001068 | MS.gene043729:CDS | 40.0% | |
| TGAATAACGCTTGAAGAGAG+GGG | - | chr7.4:53000621-53000640 | MS.gene043729:intron | 40.0% | |
| TGCAGCAGCTAAAGCTAATA+GGG | - | chr7.4:52999982-53000001 | MS.gene043729:CDS | 40.0% | |
| TGCATGCATGACAACAACAA+AGG | + | chr7.4:53000360-53000379 | None:intergenic | 40.0% | |
| TGGAAAGATTCTGCATAGGA+TGG | + | chr7.4:53001315-53001334 | None:intergenic | 40.0% | |
| TGTCTATTACCAAACGAACG+TGG | + | chr7.4:53000956-53000975 | None:intergenic | 40.0% | |
| TTGCAGCAGCTAAAGCTAAT+AGG | - | chr7.4:52999981-53000000 | MS.gene043729:CDS | 40.0% | |
| TTTGTGCAGAAATACCGAGA+AGG | - | chr7.4:52999731-52999750 | MS.gene043729:CDS | 40.0% | |
| !! | ACGTGGTTGATGAAGTTCAA+AGG | + | chr7.4:53000080-53000099 | None:intergenic | 40.0% |
| AGACTCCAAATGGTGCAAAG+TGG | - | chr7.4:52999777-52999796 | MS.gene043729:intron | 45.0% | |
| TAGGATTGTCCCTTTGAGCT+GGG | + | chr7.4:53000776-53000795 | None:intergenic | 45.0% | |
| TGCAAGGCTTTCTATCAGGA+AGG | - | chr7.4:53001039-53001058 | MS.gene043729:CDS | 45.0% | |
| TTAGGATTGTCCCTTTGAGC+TGG | + | chr7.4:53000777-53000796 | None:intergenic | 45.0% | |
| ! | ATTGCTCAACAGGGACTAGT+TGG | + | chr7.4:53000749-53000768 | None:intergenic | 45.0% |
| ! | GAGTATCACTCTCTAGCTCA+TGG | - | chr7.4:52999863-52999882 | MS.gene043729:CDS | 45.0% |
| AGCAATTGTGCCCAGCTCAA+AGG | - | chr7.4:53000763-53000782 | MS.gene043729:CDS | 50.0% | |
| CTACTGCTTCCGATTTCACG+TGG | + | chr7.4:53000097-53000116 | None:intergenic | 50.0% | |
| CTGGGCACAATTGCTCAACA+GGG | + | chr7.4:53000758-53000777 | None:intergenic | 50.0% | |
| CTTTAGCTGCTGCAACCCTT+TGG | + | chr7.4:52999976-52999995 | None:intergenic | 50.0% | |
| GCAATTGTGCCCAGCTCAAA+GGG | - | chr7.4:53000764-53000783 | MS.gene043729:CDS | 50.0% | |
| GGACTGCAAGGCTTTCTATC+AGG | - | chr7.4:53001035-53001054 | MS.gene043729:CDS | 50.0% | |
| TGAACTCACAGGTGGATGGA+AGG | - | chr7.4:53001081-53001100 | MS.gene043729:CDS | 50.0% | |
| ! | CTGCTGCAACCCTTTGGAAA+GGG | + | chr7.4:52999970-52999989 | None:intergenic | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7.4:53001093-53001112 | MS.gene043729:CDS | 50.0% |
| GCTGGGCACAATTGCTCAAC+AGG | + | chr7.4:53000759-53000778 | None:intergenic | 55.0% | |
| ! | GCTGCTGCAACCCTTTGGAA+AGG | + | chr7.4:52999971-52999990 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52999719 | 53001356 | 52999719 | ID=MS.gene043729 |
| chr7.4 | mRNA | 52999719 | 53001356 | 52999719 | ID=MS.gene043729.t1;Parent=MS.gene043729 |
| chr7.4 | exon | 53000894 | 53001356 | 53000894 | ID=MS.gene043729.t1.exon1;Parent=MS.gene043729.t1 |
| chr7.4 | CDS | 53000894 | 53001356 | 53000894 | ID=cds.MS.gene043729.t1;Parent=MS.gene043729.t1 |
| chr7.4 | exon | 53000669 | 53000790 | 53000669 | ID=MS.gene043729.t1.exon2;Parent=MS.gene043729.t1 |
| chr7.4 | CDS | 53000669 | 53000790 | 53000669 | ID=cds.MS.gene043729.t1;Parent=MS.gene043729.t1 |
| chr7.4 | exon | 52999837 | 53000128 | 52999837 | ID=MS.gene043729.t1.exon3;Parent=MS.gene043729.t1 |
| chr7.4 | CDS | 52999837 | 53000128 | 52999837 | ID=cds.MS.gene043729.t1;Parent=MS.gene043729.t1 |
| chr7.4 | exon | 52999719 | 52999750 | 52999719 | ID=MS.gene043729.t1.exon4;Parent=MS.gene043729.t1 |
| chr7.4 | CDS | 52999719 | 52999750 | 52999719 | ID=cds.MS.gene043729.t1;Parent=MS.gene043729.t1 |
| Gene Sequence |
| Protein sequence |
