AlfalfaGEDB | MS.gene043736

M. sativa cultivar XinJiangDaYe / MS.gene043736

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043736.t1	XP_003622663.1	88.4	303	32	1	1	300	1	303	1.20E-149	539.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043736.t1	Q8L3W1	28.3	346	162	7	13	287	6	336	1.1e-26	122.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043736.t1	G7KVV4	88.4	303	32	1	1	300	1	303	8.5e-150	539.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene043736.t1	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043736.t1	MTR_7g050560	88.449	303	32	1	1	300	1	303	0.0	551
MS.gene043736.t1	MTR_7g050590	75.168	298	52	6	28	304	1	297	2.49e-156	438
MS.gene043736.t1	MTR_7g050710	65.231	325	91	6	1	304	1	324	9.09e-143	405
MS.gene043736.t1	MTR_3g098790	64.706	323	88	6	1	304	1	316	1.06e-139	397
MS.gene043736.t1	MTR_7g050580	65.094	318	78	6	1	300	1	303	1.44e-138	394
MS.gene043736.t1	MTR_7g050720	60.510	314	93	8	7	289	4	317	2.60e-123	355
MS.gene043736.t1	MTR_8g103940	36.066	305	157	5	11	287	37	331	2.78e-53	181
MS.gene043736.t1	MTR_1g108780	33.218	289	152	6	29	287	13	290	1.74e-47	165
MS.gene043736.t1	MTR_1g035460	33.893	298	148	7	28	287	1	287	6.86e-47	162
MS.gene043736.t1	MTR_3g061370	34.915	295	153	8	11	286	7	281	1.39e-43	150

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043736.t1	AT3G18990	45.455	99	54	0	13	111	6	104	4.45e-23	97.8
MS.gene043736.t1	AT4G01580	41.905	105	61	0	12	116	29	133	7.98e-23	93.6
MS.gene043736.t1	AT3G18990	45.455	99	54	0	13	111	6	104	8.44e-23	97.4
MS.gene043736.t1	AT3G18990	30.380	158	97	4	137	290	191	339	4.36e-12	66.6
MS.gene043736.t1	AT3G18960	40.952	105	62	0	12	116	29	133	1.58e-21	90.5
MS.gene043736.t1	AT3G18960	40.952	105	62	0	12	116	29	133	1.89e-21	90.5
MS.gene043736.t1	AT1G49475	42.718	103	58	1	12	114	33	134	4.20e-21	89.0
MS.gene043736.t1	AT3G18960	44.318	88	49	0	29	116	9	96	1.45e-17	79.0
MS.gene043736.t1	AT4G31640	27.444	266	143	12	13	274	14	233	4.52e-13	69.3
MS.gene043736.t1	AT1G49480	29.412	153	97	4	138	287	77	221	3.01e-12	65.5

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 46 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGTTAGAAAAGGGT+TGG	0.518334	7.4:-53126012	MS.gene043736:CDS
AAGGACAATAACTTGAAAGT+TGG	0.499244	7.4:-53124765	MS.gene043736:CDS
AGAAAGTTTGTGGAGAAATA+TGG	0.293086	7.4:-53126115	MS.gene043736:CDS
AGACTCCAAATGGTGGAAAA+TGG	0.283126	7.4:-53126063	MS.gene043736:CDS
AGGTCTCCAATGGTCAAAAG+AGG	0.549419	7.4:-53125847	MS.gene043736:CDS
ATAAAACTGTGTTCCTTTAA+GGG	0.321587	7.4:+53124815	None:intergenic
ATATATCTAAAGACTCCAAA+TGG	0.494837	7.4:-53126073	MS.gene043736:CDS
ATCCTGATTAGGTACTTTGC+AGG	0.384916	7.4:+53124840	None:intergenic
CAGAATATACCAGTTAAGTT+TGG	0.352430	7.4:-53124930	MS.gene043736:CDS
CATGCTGGCAGAGAGTCCAG+AGG	0.744660	7.4:-53125728	MS.gene043736:intron

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAGCAAGTAATTAACT+TGG	-	chr7.4:53126099-53126118	MS.gene043736:CDS	30.0%
AAAGATAAACTCAAAGAGCA+TGG	-	chr7.4:53124964-53124983	MS.gene043736:intron	30.0%
AAATATGGTTAGAAAAGGGT+TGG	-	chr7.4:53126621-53126640	MS.gene043736:intron	30.0%
AAATGTATGTCAATTCAACG+AGG	-	chr7.4:53127099-53127118	MS.gene043736:intron	30.0%
AAATGTTAGGACTTGAAAAG+TGG	+	chr7.4:53125503-53125522	None:intergenic	30.0%
AAGGACAATAACTTGAAAGT+TGG	-	chr7.4:53127868-53127887	MS.gene043736:intron	30.0%
AAGTGATTACGATAGATGTA+TGG	+	chr7.4:53125153-53125172	None:intergenic	30.0%
AATGTTAGGACTTGAAAAGT+GGG	+	chr7.4:53125502-53125521	None:intergenic	30.0%
ACTATTGTAGAACAGCTATT+AGG	-	chr7.4:53127064-53127083	MS.gene043736:intron	30.0%
AGAAAGTTTGTGGAGAAATA+TGG	-	chr7.4:53126518-53126537	MS.gene043736:intron	30.0%

Showing 1 to 10 of 210 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	53124647	53128008	53124647	ID=MS.gene043736
chr7.4	mRNA	53124647	53128008	53124647	ID=MS.gene043736.t1;Parent=MS.gene043736
chr7.4	exon	53127928	53128008	53127928	ID=MS.gene043736.t1.exon1;Parent=MS.gene043736.t1
chr7.4	CDS	53127928	53128008	53127928	ID=cds.MS.gene043736.t1;Parent=MS.gene043736.t1
chr7.4	exon	53125729	53126146	53125729	ID=MS.gene043736.t1.exon2;Parent=MS.gene043736.t1
chr7.4	CDS	53125729	53126146	53125729	ID=cds.MS.gene043736.t1;Parent=MS.gene043736.t1
chr7.4	exon	53125332	53125444	53125332	ID=MS.gene043736.t1.exon3;Parent=MS.gene043736.t1
chr7.4	CDS	53125332	53125444	53125332	ID=cds.MS.gene043736.t1;Parent=MS.gene043736.t1
chr7.4	exon	53124647	53124949	53124647	ID=MS.gene043736.t1.exon4;Parent=MS.gene043736.t1
chr7.4	CDS	53124647	53124949	53124647	ID=cds.MS.gene043736.t1;Parent=MS.gene043736.t1

Gene Sequence

>MS.gene043736

ATGGCTAGTGAAACTTATGAGTTGAAGCCAATCCGCTTTTTCAAGATAATACTTGCTCAAAATCTTCATGAAGGAAAGCTTGTAAGCTTTTGACTTAGATTCTATTATTTTTCTTCTCATAATTTTGAGTTAGATTCTTTGGTCAGGTAGTTTTAATTGTTTGTTTATCTTATAACTTGATTCCATTACTTTGTATTTTGCTTGCATGCTTTTATTATGACACAAGATTTGTTGGCATAGTTTGTGGGTTAGAAATAGAAAGTGTGAGGAAAAAACACATGCATAAGTTTTAAACGAAATCTTTTAACATTATTATGAAAGATAAACTCAAAGAGCATGGATCTAGCTTACAAAACCAGGTAAATGAACATATCTGACTTGAAATTTACAAAAAGATGGAGGAAAAAAAACAGAGATAAATGACCACCACAATAATCACTGTCAAATTAATCTGATTGTTGAAGATACATCAGTTGCTACCACAACAATACAACTTGCAACCACCATACATCTATCGTAATCACTTGAAAATTGGGAACATTTTTTTTTTTTTGAAAATTGGGAACATGTGAAGGAGAACATGTGAAGACATACAAGAAAACTTTATGAAAATGAAAAACTAAAAATCTTGGTGAGAAAAGAAAAAAAGAACGTTAAAGTAATTAATTTAATTAAAGGGATAGAGACATACACCCTCCGGTCACTATTATAAGCAAAATTTCACTTTTTAGGTTCATTCACTAAATGATGTATGTGGTCTATTTAATGGACCACATACATCATTTATTGAATGAACCTAAAAAGTACATTTTTGCTTATAATAGTGACCGGAGGGTGTAGAGTTGTATCCCACCCACTTTTCAAGTCCTAACATTTTTTATTATTGTTTGCAATTTCAATAAAGCTCTGCAGCCTTGTCTAATTCTATCATTATTATATTATGATAGCTAGCGTGTCACTAGAGTAGTTAGTCAGCTGCTATGGTCAGATCACGTGAAAAATTGCACCATATATCGGACAGTTCCATTGAACAGTTCCGGATTATGATGGATTGAATTTAGACATCTGAACCGAACCACTTCTACCCACAAATACTGAAAAGTGCTCTCTTAACTACCCGATTATCCGAAACCACCCGCTCGACAGCCCGTTTTTCACACGATTATCACGGTTTCGGACTGGGTCATGGGTGGTTGACCACCCCTAGTTAGTAGCATTATTACCTTTTTTTTGGGTACAGTAGCATTATTACCTTTACTCATCTATGTCACTACATGTTCCATAAGTCCTATATCAACTTATGCCAAAATGATCGGGGTTCAAACCCCGGTACCTCCACTTATGTGTGAGTTTATGATGACTTTGTCATTTCGTCTATCTACCAAAAAAAAAGTCACTACATGGCTTCATCGCCAATTTGAACTTTTTTTCTTAATTTTTTATTTTAAAACCAAACCAGCAAGTAATTAACTTGGATAAGATAGCATGTATCATGACATATTGGACTATCAAAATGGAAGGGCGATTGATATAAATGCTATTTAACAGGGGATTTATAATTGAGAAAAATGCACATGGTAAACGACATATGAGCTTATATTTAGGGACAATGTTTTTTTCCTCAAAAGGGTACTTGTAAATAAAAATTCGAGTTTGGTCCACTAATTTTATGATGGACTTGACCACCAAATTTGTAGCCTAATGAAACTATGAGCTGGTGCATCCTGCTTACTCAATTCGGCGTTAAGTCGGGCGTCCTGATTGGAAAACTAAGTAATTATTCTGATAAATGTGGTTTAGGAGTCTCACGTTACTTAAAAAAGTACTATCATGTATACTAATTTGGTTTAATTAATTGATAGATGATGCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGGAAAATGGAAATTAAATTTGGTAAAAAGTGATGGCAAAATATGGTTAGAAAAGGGTTGGAAAGAATTTGCAGAGCGTCATTCTCTAGCTCATGGCCATCTTCTGGTTTTCAAATATCTAAGAAATTCACATTTTCTTGTGCGCATCTTTGAAAAGAGTGCCTTAGAGATAAATTATCCATTCCAAAGAGTTTCAGCCAAAAAGGTCTCCAATGGTCAAAAGAGGAAAGATAACTCCTCTTTTGAATTTCATCAACCACATGAAATTGGAAGCAATAGTTGTGTTGAAGTTGAGAAATTGAATAAGGTAGCAACTTTGCATCATGCTGGCAGAGAGTCCAGAGGTATCAGATTTTGTGTCTTCATTGTCTCATCAAAGTTTCACAAGTTAACATAAATTATTAGCTTTCGTTCTCCTCAATCTGTATTATCATTTTTCTTTCCATGATGTGTCGATGGACGAAGTTCAAATCCCTTCAGAACTATTGTAGAACAGCTATTAGGGAAACCAGCTAAAAATGTATGTCAATTCAACGAGGAATCAACATACATTTTTAGCAGGTTTCAACATATAGAAACATGAAAGATGATTTTGAAATATGAGCCTTATTGAGTTCAAATTTTGCAGGGAAACAAGTGCTTACTGCTAAGAGAGTAACAAGAGCACAATCTTTCAAAACATGCAATCCATCCTTTGTTGCTGTCATGCGTGCATCATACGTGGAACACCGATTTCTTATGGTAAGTTGCAAAAAAAGTGGTTGCTAGAACTACATATGCACTGACGAAGGATAACTTTTAATATGTTTTGTGACGCGTTAATACATATTTCTGATCATGATTAATACATAGTTTATGATTTCTTTCTCTTTTCATATTTCCCGTTGATACCAATTGGTTCTTGTTGAGAAAGAATTTCCCAGCTCAAATGGAGGGTCTTAACAATTATTCAATCAGATATTATCACATAAATGTTTATTGGAATATTAATAGATATATTATAATGACAGTGATATTATGATTAGATTAGATAACTATGTAAGAAAATACACAATGTTAAGTACTCCAACAAGAACTTTCTAATTTTTATTCATTAACATTTATCTTTTTTTTTGATTGGCAGAATATACCAGTTAAGTTTGGTAAGACACACTTTGATTTGGATAAGAAGAGAGGAGATGTTTATTTGTTGTTAAATGAAGGAATTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTAAAGGAACACAGTTTTATCTCACAACTGGATGGAAGGCATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTTGAGCTCATCTCTAGCACTATACTTACCTTCATTGTGCACATCTTTAGAGAGACAGACAATGACAACACAAATTGTTCAACATCTCAAAGTATGATTAATTGA

Protein sequence

>MS.gene043736.t1

MASETYELKPIRFFKIILAQNLHEGKLMMPRKFVEKYGEGLSNAIYLKTPNGGKWKLNLVKSDGKIWLEKGWKEFAERHSLAHGHLLVFKYLRNSHFLVRIFEKSALEINYPFQRVSAKKVSNGQKRKDNSSFEFHQPHEIGSNSCVEVEKLNKVATLHHAGRESRGKQVLTAKRVTRAQSFKTCNPSFVAVMRASYVEHRFLMNIPVKFGKTHFDLDKKRGDVYLLLNEGIWPAKYLIRMTLKGTQFYLTTGWKAFAKDNNLKVGDVCKFELISSTILTFIVHIFRETDNDNTNCSTSQSMIN