Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04374.t1 | XP_024634637.1 | 91.2 | 240 | 21 | 0 | 10 | 249 | 25 | 264 | 1.40E-125 | 459.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04374.t1 | Q8L3W1 | 23.5 | 315 | 179 | 7 | 10 | 265 | 21 | 332 | 2.2e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04374.t1 | G8A2Z2 | 73.4 | 259 | 68 | 1 | 10 | 267 | 22 | 280 | 9.7e-105 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04374.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04374.t1 | MTR_3g061370 | 73.359 | 259 | 68 | 1 | 10 | 267 | 22 | 280 | 5.24e-138 | 390 |
| MS.gene04374.t1 | MTR_3g061350 | 72.587 | 259 | 70 | 1 | 10 | 267 | 25 | 283 | 6.79e-135 | 382 |
| MS.gene04374.t1 | MTR_3g061340 | 74.517 | 259 | 55 | 3 | 10 | 267 | 25 | 273 | 1.20e-134 | 381 |
| MS.gene04374.t1 | MTR_3g061320 | 72.093 | 258 | 68 | 1 | 10 | 267 | 25 | 278 | 5.35e-133 | 377 |
| MS.gene04374.t1 | MTR_3g061310 | 70.769 | 260 | 74 | 1 | 10 | 267 | 25 | 284 | 2.50e-131 | 373 |
| MS.gene04374.t1 | MTR_3g061330 | 72.807 | 228 | 59 | 3 | 10 | 235 | 25 | 251 | 2.05e-115 | 332 |
| MS.gene04374.t1 | MTR_3g061290 | 86.713 | 143 | 18 | 1 | 10 | 152 | 25 | 166 | 1.83e-86 | 256 |
| MS.gene04374.t1 | MTR_3g061300 | 92.913 | 127 | 9 | 0 | 146 | 272 | 1 | 127 | 7.20e-84 | 247 |
| MS.gene04374.t1 | MTR_1g035460 | 34.708 | 291 | 149 | 9 | 11 | 267 | 2 | 285 | 1.88e-49 | 168 |
| MS.gene04374.t1 | MTR_1g108780 | 31.457 | 302 | 156 | 9 | 5 | 271 | 7 | 292 | 1.54e-44 | 156 |
| MS.gene04374.t1 | MTR_1g108780 | 29.646 | 226 | 133 | 7 | 53 | 272 | 256 | 461 | 3.76e-15 | 75.1 |
| MS.gene04374.t1 | MTR_3g061220 | 67.290 | 107 | 21 | 2 | 10 | 116 | 25 | 117 | 4.93e-44 | 145 |
| MS.gene04374.t1 | MTR_8g103940 | 32.302 | 291 | 149 | 7 | 10 | 267 | 54 | 329 | 9.20e-42 | 150 |
| MS.gene04374.t1 | MTR_8g103940 | 40.594 | 101 | 52 | 3 | 174 | 270 | 400 | 496 | 2.34e-15 | 75.9 |
| MS.gene04374.t1 | MTR_5g044670 | 29.630 | 297 | 167 | 11 | 4 | 271 | 22 | 305 | 9.09e-38 | 135 |
| MS.gene04374.t1 | MTR_7g050710 | 29.032 | 279 | 176 | 6 | 10 | 267 | 28 | 305 | 9.06e-34 | 125 |
| MS.gene04374.t1 | MTR_7g050560 | 31.061 | 264 | 171 | 5 | 11 | 267 | 29 | 288 | 2.32e-29 | 113 |
| MS.gene04374.t1 | MTR_1g035640 | 29.348 | 276 | 170 | 6 | 8 | 270 | 18 | 281 | 2.51e-29 | 115 |
| MS.gene04374.t1 | MTR_3g098790 | 28.676 | 272 | 182 | 6 | 8 | 267 | 26 | 297 | 5.29e-28 | 110 |
| MS.gene04374.t1 | MTR_7g050590 | 30.282 | 284 | 164 | 10 | 11 | 267 | 2 | 278 | 1.17e-27 | 108 |
| MS.gene04374.t1 | MTR_7g050720 | 29.066 | 289 | 172 | 10 | 11 | 267 | 26 | 313 | 2.88e-26 | 105 |
| MS.gene04374.t1 | MTR_7g050580 | 28.102 | 274 | 166 | 8 | 11 | 267 | 29 | 288 | 3.32e-26 | 104 |
| MS.gene04374.t1 | MTR_4g119990 | 29.110 | 292 | 166 | 11 | 8 | 267 | 28 | 310 | 7.49e-25 | 102 |
| MS.gene04374.t1 | MTR_5g070440 | 26.592 | 267 | 157 | 5 | 10 | 270 | 36 | 269 | 1.81e-24 | 99.4 |
| MS.gene04374.t1 | MTR_1g035570 | 26.502 | 283 | 176 | 7 | 8 | 270 | 18 | 288 | 5.74e-24 | 100 |
| MS.gene04374.t1 | MTR_3g005480 | 29.151 | 271 | 133 | 7 | 7 | 265 | 33 | 256 | 6.52e-23 | 95.1 |
| MS.gene04374.t1 | MTR_3g005420 | 27.509 | 269 | 152 | 7 | 10 | 270 | 304 | 537 | 7.96e-23 | 97.8 |
| MS.gene04374.t1 | MTR_3g005420 | 25.379 | 264 | 127 | 7 | 10 | 262 | 55 | 259 | 1.60e-17 | 82.4 |
| MS.gene04374.t1 | MTR_3g005490 | 27.715 | 267 | 145 | 6 | 10 | 270 | 36 | 260 | 1.34e-22 | 94.4 |
| MS.gene04374.t1 | MTR_6g061070 | 27.397 | 292 | 172 | 10 | 11 | 267 | 34 | 320 | 4.19e-22 | 95.5 |
| MS.gene04374.t1 | MTR_6g043890 | 26.592 | 267 | 174 | 8 | 8 | 255 | 28 | 291 | 4.57e-21 | 91.3 |
| MS.gene04374.t1 | MTR_3g005460 | 26.394 | 269 | 157 | 7 | 10 | 267 | 277 | 515 | 1.53e-20 | 91.3 |
| MS.gene04374.t1 | MTR_3g005460 | 26.087 | 253 | 137 | 5 | 10 | 262 | 40 | 242 | 2.45e-17 | 81.6 |
| MS.gene04374.t1 | MTR_1g035620 | 25.090 | 279 | 169 | 8 | 10 | 270 | 24 | 280 | 1.48e-19 | 87.8 |
| MS.gene04374.t1 | MTR_4g068320 | 34.426 | 122 | 72 | 1 | 10 | 123 | 21 | 142 | 4.38e-19 | 86.7 |
| MS.gene04374.t1 | MTR_1g050845 | 25.000 | 272 | 166 | 8 | 10 | 270 | 24 | 268 | 7.75e-18 | 83.6 |
| MS.gene04374.t1 | MTR_3g005495 | 28.063 | 253 | 139 | 6 | 10 | 262 | 258 | 467 | 1.36e-17 | 82.4 |
| MS.gene04374.t1 | MTR_3g005495 | 44.048 | 84 | 47 | 0 | 10 | 93 | 28 | 111 | 2.25e-17 | 81.6 |
| MS.gene04374.t1 | MTR_3g005420 | 25.379 | 264 | 127 | 7 | 10 | 262 | 36 | 240 | 1.63e-17 | 82.4 |
| MS.gene04374.t1 | MTR_1g035510 | 35.000 | 120 | 71 | 3 | 11 | 126 | 2 | 118 | 7.36e-17 | 77.8 |
| MS.gene04374.t1 | MTR_1g035650 | 37.736 | 106 | 59 | 2 | 10 | 110 | 24 | 127 | 9.82e-17 | 77.0 |
| MS.gene04374.t1 | MTR_1g034240 | 33.058 | 121 | 73 | 1 | 10 | 122 | 22 | 142 | 1.62e-16 | 79.3 |
| MS.gene04374.t1 | MTR_3g005440 | 35.577 | 104 | 67 | 0 | 10 | 113 | 35 | 138 | 1.63e-16 | 79.3 |
| MS.gene04374.t1 | MTR_3g005440 | 28.994 | 169 | 93 | 3 | 10 | 177 | 257 | 399 | 5.09e-14 | 72.0 |
| MS.gene04374.t1 | MTR_1g021360 | 24.262 | 305 | 180 | 9 | 1 | 272 | 188 | 474 | 3.07e-16 | 78.6 |
| MS.gene04374.t1 | MTR_1g035470 | 34.559 | 136 | 79 | 4 | 11 | 140 | 2 | 133 | 1.74e-15 | 72.0 |
| MS.gene04374.t1 | MTR_7g050640 | 39.744 | 78 | 47 | 0 | 11 | 88 | 29 | 106 | 2.18e-15 | 70.9 |
| MS.gene04374.t1 | MTR_1g034210 | 33.600 | 125 | 73 | 2 | 6 | 122 | 18 | 140 | 8.38e-15 | 73.6 |
| MS.gene04374.t1 | MTR_1g034210 | 33.600 | 125 | 73 | 2 | 6 | 122 | 18 | 140 | 1.02e-14 | 73.6 |
| MS.gene04374.t1 | MTR_1g035440 | 40.230 | 87 | 51 | 1 | 8 | 93 | 28 | 114 | 1.47e-13 | 68.9 |
| MS.gene04374.t1 | MTR_1g033740 | 31.496 | 127 | 79 | 4 | 11 | 132 | 38 | 161 | 2.01e-13 | 67.8 |
| MS.gene04374.t1 | MTR_1g035480 | 33.043 | 115 | 68 | 4 | 11 | 119 | 33 | 144 | 6.33e-13 | 65.9 |
| MS.gene04374.t1 | MTR_1g035520 | 38.542 | 96 | 55 | 3 | 9 | 103 | 86 | 178 | 1.66e-12 | 67.0 |
| MS.gene04374.t1 | MTR_1g035500 | 33.913 | 115 | 67 | 4 | 11 | 119 | 41 | 152 | 3.22e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04374.t1 | AT3G18990 | 25.392 | 319 | 168 | 12 | 10 | 265 | 21 | 332 | 1.48e-23 | 98.6 |
| MS.gene04374.t1 | AT1G49475 | 39.806 | 103 | 60 | 2 | 10 | 112 | 49 | 149 | 4.13e-16 | 75.1 |
| MS.gene04374.t1 | AT3G18990 | 31.579 | 114 | 72 | 1 | 10 | 117 | 21 | 134 | 1.39e-15 | 75.9 |
| MS.gene04374.t1 | AT4G01580 | 32.231 | 121 | 75 | 2 | 10 | 129 | 45 | 159 | 4.08e-15 | 72.4 |
| MS.gene04374.t1 | AT3G18960 | 38.372 | 86 | 53 | 0 | 8 | 93 | 6 | 91 | 2.17e-14 | 69.7 |
| MS.gene04374.t1 | AT3G18960 | 39.286 | 84 | 51 | 0 | 10 | 93 | 45 | 128 | 2.95e-14 | 70.5 |
| MS.gene04374.t1 | AT3G18960 | 39.286 | 84 | 51 | 0 | 10 | 93 | 45 | 128 | 3.01e-14 | 70.1 |
| MS.gene04374.t1 | AT4G33280 | 25.347 | 288 | 183 | 10 | 11 | 271 | 39 | 321 | 7.78e-14 | 70.9 |
Find 57 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGTGTTCCAACTTTAAA+TGG | 0.142271 | 3.4:+56975791 | MS.gene04374:intron |
| GTACTAAATGGAAAGTTTAT+TGG | 0.221899 | 3.4:+56974202 | MS.gene04374:CDS |
| CTCTCTTGGACATGGCTGTT+TGG | 0.307883 | 3.4:+56974284 | MS.gene04374:CDS |
| TTTCTAGTACTCTTCTGATT+TGG | 0.316148 | 3.4:-56974462 | None:intergenic |
| AGTCTATTTCTACTGCATTC+TGG | 0.324981 | 3.4:-56974356 | None:intergenic |
| AGAGTCCTGATGGTACTAAA+TGG | 0.342374 | 3.4:+56974190 | MS.gene04374:CDS |
| CTACTCATTTAGCAGAAAAT+CGG | 0.355466 | 3.4:+56975665 | MS.gene04374:CDS |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3.4:+56975982 | MS.gene04374:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.363298 | 3.4:+56974270 | MS.gene04374:CDS |
| ATCAGAAGAGTACTAGAAAA+AGG | 0.373090 | 3.4:+56974466 | MS.gene04374:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3.4:+56974236 | MS.gene04374:CDS |
| TGTCTCCTTGTAAACTCATT+TGG | 0.382989 | 3.4:-56974135 | None:intergenic |
| ACATTTCTAGCCTCACAATA+AGG | 0.400255 | 3.4:-56975884 | None:intergenic |
| TCAATAACCCCATTTAAAGT+TGG | 0.400471 | 3.4:-56975800 | None:intergenic |
| TCCTGAGCTCTAGCTCCCTT+TGG | 0.408256 | 3.4:-56975589 | None:intergenic |
| AAAGAACTACATCATGGAAT+TGG | 0.425827 | 3.4:+56975566 | MS.gene04374:CDS |
| AGCGTGTTCCAACTTTAAAT+GGG | 0.429597 | 3.4:+56975792 | MS.gene04374:intron |
| CGACCACATAAGAAAGTAAG+AGG | 0.449011 | 3.4:+56974507 | MS.gene04374:CDS |
| GATACATTAACTATCACCTT+TGG | 0.453024 | 3.4:-56976023 | None:intergenic |
| TGTGGTCGAGGAGAAAATAA+TGG | 0.464278 | 3.4:-56974492 | None:intergenic |
| AAGTTTGATGTAGTAATACT+TGG | 0.466742 | 3.4:+56974333 | MS.gene04374:CDS |
| ACCACTTTCTCTTGCAAACA+AGG | 0.468664 | 3.4:-56975930 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3.4:+56974241 | MS.gene04374:CDS |
| TCTTGCAAACAAGGACCAAC+CGG | 0.476293 | 3.4:-56975921 | None:intergenic |
| ACTTTCCATTTAGTACCATC+AGG | 0.482876 | 3.4:-56974195 | None:intergenic |
| ATACCTCTTACTTTCTTATG+TGG | 0.489376 | 3.4:-56974510 | None:intergenic |
| TTGGTGGTGTTTGAATATAA+AGG | 0.491592 | 3.4:+56974303 | MS.gene04374:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3.4:+56974237 | MS.gene04374:CDS |
| CTTACTTTCTTATGTGGTCG+AGG | 0.501623 | 3.4:-56974504 | None:intergenic |
| TACTCATTTAGCAGAAAATC+GGG | 0.503743 | 3.4:+56975666 | MS.gene04374:CDS |
| AGTATGTGATGATGCAGATT+GGG | 0.504849 | 3.4:+56975834 | MS.gene04374:CDS |
| TCTTGGACATGGCTGTTTGG+TGG | 0.505898 | 3.4:+56974287 | MS.gene04374:CDS |
| TGCAGATTGGGAAAAGATCA+TGG | 0.514589 | 3.4:+56975846 | MS.gene04374:CDS |
| AATGTTCGACGCCTCTCGGC+CGG | 0.520587 | 3.4:+56975902 | MS.gene04374:CDS |
| TCCTTGTTTGCAAGAGAAAG+TGG | 0.529022 | 3.4:+56975929 | MS.gene04374:CDS |
| ACATCATGGAATTGGCCAAA+GGG | 0.541191 | 3.4:+56975574 | MS.gene04374:CDS |
| GCGAGAGCTATCTGTGAAGA+AGG | 0.545148 | 3.4:+56973342 | MS.gene04374:CDS |
| AGAGAAAGTGGTCTGCAAGT+AGG | 0.546476 | 3.4:+56975941 | MS.gene04374:CDS |
| GCCAAAGGGAGCTAGAGCTC+AGG | 0.549833 | 3.4:+56975588 | MS.gene04374:CDS |
| TTTAATGTTCATATTACCAA+AGG | 0.552108 | 3.4:+56976007 | MS.gene04374:CDS |
| AAGTATGTGATGATGCAGAT+TGG | 0.559075 | 3.4:+56975833 | MS.gene04374:CDS |
| AAATACCAAATGAGTTTACA+AGG | 0.560882 | 3.4:+56974130 | MS.gene04374:CDS |
| TTCGACGCCTCTCGGCCGGT+TGG | 0.561986 | 3.4:+56975906 | MS.gene04374:CDS |
| TGGTCATACTGATGATGAAT+CGG | 0.562626 | 3.4:+56974419 | MS.gene04374:CDS |
| TAGAAATGTTCGACGCCTCT+CGG | 0.568847 | 3.4:+56975898 | MS.gene04374:CDS |
| TCAGGACTCTTGATCAACAC+TGG | 0.571999 | 3.4:-56974177 | None:intergenic |
| CTGGTGAAAGAACTACATCA+TGG | 0.579498 | 3.4:+56975560 | MS.gene04374:CDS |
| GCAGCTGAGGTTATGAAGAC+TGG | 0.589100 | 3.4:+56975541 | MS.gene04374:intron |
| GTGTTGATCAAGAGTCCTGA+TGG | 0.607925 | 3.4:+56974180 | MS.gene04374:CDS |
| TACATCATGGAATTGGCCAA+AGG | 0.610272 | 3.4:+56975573 | MS.gene04374:CDS |
| GAAACTGCTTCCTTATTGTG+AGG | 0.617392 | 3.4:+56975874 | MS.gene04374:CDS |
| GCGTGTTCCAACTTTAAATG+GGG | 0.619238 | 3.4:+56975793 | MS.gene04374:intron |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.4:+56974276 | MS.gene04374:CDS |
| GATGATGAGAATGACAATGT+TGG | 0.639579 | 3.4:+56974399 | MS.gene04374:CDS |
| AATGAGTTTACAAGGAGACA+TGG | 0.642216 | 3.4:+56974138 | MS.gene04374:CDS |
| ACAAGGACCAACCGGCCGAG+AGG | 0.663569 | 3.4:-56975913 | None:intergenic |
| TCATTTAGCAGAAAATCGGG+TGG | 0.719217 | 3.4:+56975669 | MS.gene04374:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAGCAAAAAAAAAATTT+AGG | - | chr3.4:56973664-56973683 | None:intergenic | 10.0% |
| !! | AAAACGACTTATAATAAAAT+AGG | + | chr3.4:56975375-56975394 | MS.gene04374:intron | 15.0% |
| !! | AAACGACTTATAATAAAATA+GGG | + | chr3.4:56975376-56975395 | MS.gene04374:intron | 15.0% |
| !! | AACATAATAAAATACAAAGA+GGG | - | chr3.4:56974993-56975012 | None:intergenic | 15.0% |
| !! | AACTGTTGTAATTAATTAAA+CGG | - | chr3.4:56973732-56973751 | None:intergenic | 15.0% |
| !! | TAACATAATAAAATACAAAG+AGG | - | chr3.4:56974994-56975013 | None:intergenic | 15.0% |
| !!! | CATAAGTTTTTATTTATAGA+AGG | + | chr3.4:56974049-56974068 | MS.gene04374:intron | 15.0% |
| !!! | CTTTTCAATATCATTAATAA+GGG | + | chr3.4:56975139-56975158 | MS.gene04374:intron | 15.0% |
| !!! | GTATTTTATTATGTTACTTT+GGG | + | chr3.4:56974998-56975017 | MS.gene04374:intron | 15.0% |
| !!! | TATTTTATTATGTTACTTTG+GGG | + | chr3.4:56974999-56975018 | MS.gene04374:intron | 15.0% |
| !!! | TCTTTTCAATATCATTAATA+AGG | + | chr3.4:56975138-56975157 | MS.gene04374:intron | 15.0% |
| !!! | TGTATTTTATTATGTTACTT+TGG | + | chr3.4:56974997-56975016 | MS.gene04374:intron | 15.0% |
| !! | ACTGTTGTAATTAATTAAAC+GGG | - | chr3.4:56973731-56973750 | None:intergenic | 20.0% |
| !! | AGAGAATAATACCTAATAAA+GGG | - | chr3.4:56975098-56975117 | None:intergenic | 20.0% |
| !! | AGTTTCTTACTATTTACTAT+TGG | - | chr3.4:56973464-56973483 | None:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAATTCAA+TGG | + | chr3.4:56974216-56974235 | MS.gene04374:CDS | 20.0% |
| !! | TAACTCTAAATAGTAGAAAT+CGG | - | chr3.4:56973937-56973956 | None:intergenic | 20.0% |
| !! | TACACATTATTTAATGCTAA+TGG | + | chr3.4:56973527-56973546 | MS.gene04374:intron | 20.0% |
| !! | TATATGAGAATTGTGAAAAA+AGG | - | chr3.4:56975643-56975662 | None:intergenic | 20.0% |
| !! | TTTAATGTTCATATTACCAA+AGG | + | chr3.4:56976007-56976026 | MS.gene04374:CDS | 20.0% |
| !!! | TCCTTTTGACAATTTTTTTT+GGG | + | chr3.4:56975236-56975255 | MS.gene04374:intron | 20.0% |
| !!! | TTCCTTTTGACAATTTTTTT+TGG | + | chr3.4:56975235-56975254 | MS.gene04374:intron | 20.0% |
| ! | AAAAATTCAATGGTGAGATT+TGG | + | chr3.4:56974226-56974245 | MS.gene04374:CDS | 25.0% |
| ! | AAAATGAAATCCAAAGACTT+TGG | - | chr3.4:56974701-56974720 | None:intergenic | 25.0% |
| ! | AAATACCAAATGAGTTTACA+AGG | + | chr3.4:56974130-56974149 | MS.gene04374:CDS | 25.0% |
| ! | AAGTTTGATGTAGTAATACT+TGG | + | chr3.4:56974333-56974352 | MS.gene04374:CDS | 25.0% |
| ! | ACCCAAAAAAAATTGTCAAA+AGG | - | chr3.4:56975240-56975259 | None:intergenic | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | + | chr3.4:56975982-56976001 | MS.gene04374:CDS | 25.0% |
| ! | AGAAAAAACCAACATGTTAT+TGG | + | chr3.4:56974871-56974890 | MS.gene04374:intron | 25.0% |
| ! | ATGATCTTGAAAAAATGGAT+GGG | - | chr3.4:56973873-56973892 | None:intergenic | 25.0% |
| ! | ATTAGTCACATTTAACAACA+TGG | + | chr3.4:56974826-56974845 | MS.gene04374:intron | 25.0% |
| ! | GAGAGAATAATACCTAATAA+AGG | - | chr3.4:56975099-56975118 | None:intergenic | 25.0% |
| ! | GTACTAAATGGAAAGTTTAT+TGG | + | chr3.4:56974202-56974221 | MS.gene04374:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3.4:56974270-56974289 | MS.gene04374:CDS | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr3.4:56973672-56973691 | MS.gene04374:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr3.4:56973691-56973672 | None:intergenic | 25.0% |
| !!! | AATGCTTGTTTTACCTTTTT+AGG | - | chr3.4:56974934-56974953 | None:intergenic | 25.0% |
| !!! | AGTCGTTTTGACAATTTTTT+TGG | - | chr3.4:56975279-56975260 | None:intergenic | 25.0% |
| !!! | TTAATTTGCTTCACCTAAAA+AGG | + | chr3.4:56974918-56974937 | MS.gene04374:intron | 25.0% |
| !!! | TTTTAGGTGAAGCAAATTAA+TGG | - | chr3.4:56974918-56974937 | None:intergenic | 25.0% |
| AAAAATTTAAGTGCCCAAGT+TGG | - | chr3.4:56974105-56974124 | None:intergenic | 30.0% | |
| AAAACAAGCATTCAATCTCA+TGG | + | chr3.4:56974942-56974961 | MS.gene04374:intron | 30.0% | |
| AAAGAACTACATCATGGAAT+TGG | + | chr3.4:56975566-56975585 | MS.gene04374:CDS | 30.0% | |
| AAATGTGACTAATCAAGCTA+AGG | - | chr3.4:56974819-56974838 | None:intergenic | 30.0% | |
| ATACCTCTTACTTTCTTATG+TGG | - | chr3.4:56974513-56974532 | None:intergenic | 30.0% | |
| CTACTCATTTAGCAGAAAAT+CGG | + | chr3.4:56975665-56975684 | MS.gene04374:CDS | 30.0% | |
| GATGATCTTGAAAAAATGGA+TGG | - | chr3.4:56973874-56973893 | None:intergenic | 30.0% | |
| GTCATCTTTGGTTAGAAATA+AGG | - | chr3.4:56974797-56974816 | None:intergenic | 30.0% | |
| TACTCATTTAGCAGAAAATC+GGG | + | chr3.4:56975666-56975685 | MS.gene04374:CDS | 30.0% | |
| TAGGGATATAGTACAAAAGA+TGG | + | chr3.4:56975394-56975413 | MS.gene04374:intron | 30.0% | |
| TATAGTATGTCACACTCTAT+TGG | - | chr3.4:56974761-56974780 | None:intergenic | 30.0% | |
| TTCCTATCATACCCTTTATT+AGG | + | chr3.4:56975084-56975103 | MS.gene04374:intron | 30.0% | |
| ! | AAGAAAGTAAGAGGTATGTA+TGG | + | chr3.4:56974516-56974535 | MS.gene04374:intron | 30.0% |
| ! | ATTTTTAAACTTACTCCCTC+CGG | - | chr3.4:56973694-56973713 | None:intergenic | 30.0% |
| ! | CAAGTCTTTGAAGATTAGAT+TGG | - | chr3.4:56973899-56973918 | None:intergenic | 30.0% |
| ! | GATTTTCTGCTAAATGAGTA+GGG | - | chr3.4:56975666-56975685 | None:intergenic | 30.0% |
| ! | TACCTAATAAAGGGTATGAT+AGG | - | chr3.4:56975089-56975108 | None:intergenic | 30.0% |
| ! | TCAATAACCCCATTTAAAGT+TGG | - | chr3.4:56975803-56975822 | None:intergenic | 30.0% |
| ! | TTTCTAGTACTCTTCTGATT+TGG | - | chr3.4:56974465-56974484 | None:intergenic | 30.0% |
| !! | ATCAGAAGAGTACTAGAAAA+AGG | + | chr3.4:56974466-56974485 | MS.gene04374:CDS | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3.4:56974303-56974322 | MS.gene04374:CDS | 30.0% |
| AATCAAGCTAAGGTCATCTT+TGG | - | chr3.4:56974809-56974828 | None:intergenic | 35.0% | |
| AATGAGTTTACAAGGAGACA+TGG | + | chr3.4:56974138-56974157 | MS.gene04374:CDS | 35.0% | |
| ACTTTCCATTTAGTACCATC+AGG | - | chr3.4:56974198-56974217 | None:intergenic | 35.0% | |
| AGCGTGTTCCAACTTTAAAT+GGG | + | chr3.4:56975792-56975811 | MS.gene04374:intron | 35.0% | |
| ATGTCTATGACCAAAGTCTT+TGG | + | chr3.4:56974688-56974707 | MS.gene04374:intron | 35.0% | |
| ATTGAGCTGTTAGAAGTTGA+CGG | - | chr3.4:56973493-56973512 | None:intergenic | 35.0% | |
| CATTGAATGCGAAATGTATG+TGG | - | chr3.4:56973639-56973658 | None:intergenic | 35.0% | |
| CTTGAAAAAATGGATGGGAA+AGG | - | chr3.4:56973868-56973887 | None:intergenic | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3.4:56974276-56974295 | MS.gene04374:CDS | 35.0% | |
| GAATACTAATTTGACACCGT+TGG | + | chr3.4:56974071-56974090 | MS.gene04374:intron | 35.0% | |
| GATGATGAGAATGACAATGT+TGG | + | chr3.4:56974399-56974418 | MS.gene04374:CDS | 35.0% | |
| GGAGGATGATCTTGAAAAAA+TGG | - | chr3.4:56973878-56973897 | None:intergenic | 35.0% | |
| TAATTAAACGGGCATACTGT+TGG | - | chr3.4:56973720-56973739 | None:intergenic | 35.0% | |
| TGTCTCCTTGTAAACTCATT+TGG | - | chr3.4:56974138-56974157 | None:intergenic | 35.0% | |
| ! | AAGTATGTGATGATGCAGAT+TGG | + | chr3.4:56975833-56975852 | MS.gene04374:CDS | 35.0% |
| ! | AGTATGTGATGATGCAGATT+GGG | + | chr3.4:56975834-56975853 | MS.gene04374:CDS | 35.0% |
| ! | CGATTTTCTGCTAAATGAGT+AGG | - | chr3.4:56975667-56975686 | None:intergenic | 35.0% |
| ! | CGGTTGAGATTTTAGATGAA+TGG | + | chr3.4:56974439-56974458 | MS.gene04374:CDS | 35.0% |
| ! | GTCTTTGAAGATTAGATTGG+AGG | - | chr3.4:56973896-56973915 | None:intergenic | 35.0% |
| ! | TGGTCATACTGATGATGAAT+CGG | + | chr3.4:56974419-56974438 | MS.gene04374:CDS | 35.0% |
| !! | ACATTTCTAGCCTCACAATA+AGG | - | chr3.4:56975887-56975906 | None:intergenic | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3.4:56974241-56974260 | MS.gene04374:CDS | 35.0% |
| !! | AGTCTATTTCTACTGCATTC+TGG | - | chr3.4:56974359-56974378 | None:intergenic | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3.4:56974237-56974256 | MS.gene04374:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3.4:56974236-56974255 | MS.gene04374:CDS | 35.0% |
| ACATCATGGAATTGGCCAAA+GGG | + | chr3.4:56975574-56975593 | MS.gene04374:CDS | 40.0% | |
| ACATGTTATTGGCATCCTAC+TGG | + | chr3.4:56974882-56974901 | MS.gene04374:intron | 40.0% | |
| ACCACTTTCTCTTGCAAACA+AGG | - | chr3.4:56975933-56975952 | None:intergenic | 40.0% | |
| AGAGTCCTGATGGTACTAAA+TGG | + | chr3.4:56974190-56974209 | MS.gene04374:CDS | 40.0% | |
| ATGTATGGATGAGTTAGGCT+TGG | + | chr3.4:56974531-56974550 | MS.gene04374:intron | 40.0% | |
| CACACAAATATATGCAGCTG+AGG | + | chr3.4:56975528-56975547 | MS.gene04374:intron | 40.0% | |
| CAGCGTGTTCCAACTTTAAA+TGG | + | chr3.4:56975791-56975810 | MS.gene04374:intron | 40.0% | |
| CGACCACATAAGAAAGTAAG+AGG | + | chr3.4:56974507-56974526 | MS.gene04374:CDS | 40.0% | |
| CTCAGCTGCATATATTTGTG+TGG | - | chr3.4:56975530-56975549 | None:intergenic | 40.0% | |
| CTGGTGAAAGAACTACATCA+TGG | + | chr3.4:56975560-56975579 | MS.gene04374:CDS | 40.0% | |
| CTTACTTTCTTATGTGGTCG+AGG | - | chr3.4:56974507-56974526 | None:intergenic | 40.0% | |
| GAAACTGCTTCCTTATTGTG+AGG | + | chr3.4:56975874-56975893 | MS.gene04374:CDS | 40.0% | |
| GAGGTATGTATGGATGAGTT+AGG | + | chr3.4:56974526-56974545 | MS.gene04374:intron | 40.0% | |
| GCGTGTTCCAACTTTAAATG+GGG | + | chr3.4:56975793-56975812 | MS.gene04374:intron | 40.0% | |
| GTAGGATGCCAATAACATGT+TGG | - | chr3.4:56974882-56974901 | None:intergenic | 40.0% | |
| TACATCATGGAATTGGCCAA+AGG | + | chr3.4:56975573-56975592 | MS.gene04374:CDS | 40.0% | |
| TCATTTAGCAGAAAATCGGG+TGG | + | chr3.4:56975669-56975688 | MS.gene04374:CDS | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | chr3.4:56975846-56975865 | MS.gene04374:CDS | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr3.4:56973676-56973695 | MS.gene04374:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr3.4:56973695-56973676 | None:intergenic | 40.0% | |
| TGTGGTCGAGGAGAAAATAA+TGG | - | chr3.4:56974495-56974514 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr3.4:56973675-56973694 | MS.gene04374:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr3.4:56973694-56973675 | None:intergenic | 40.0% | |
| ! | TCATGATGCTTGACGTTTTC+AGG | - | chr3.4:56975435-56975454 | None:intergenic | 40.0% |
| ! | TCCTTGTTTGCAAGAGAAAG+TGG | + | chr3.4:56975929-56975948 | MS.gene04374:CDS | 40.0% |
| !! | GAGTTTTGCATGCTAGCTTA+TGG | + | chr3.4:56973764-56973783 | MS.gene04374:intron | 40.0% |
| !! | TATCTGTGAAGAAGGTGCTT+TGG | + | chr3.4:56973350-56973369 | MS.gene04374:intron | 40.0% |
| ACTTCATACTCCATCACCCA+TGG | + | chr3.4:56973827-56973846 | MS.gene04374:intron | 45.0% | |
| AGAGAAAGTGGTCTGCAAGT+AGG | + | chr3.4:56975941-56975960 | MS.gene04374:CDS | 45.0% | |
| CTAATGGTAAGTACTCCCTC+CGG | + | chr3.4:56973543-56973562 | MS.gene04374:intron | 45.0% | |
| GTAGCATTTCTCCTAGCCAT+GGG | - | chr3.4:56973846-56973865 | None:intergenic | 45.0% | |
| TAGAAATGTTCGACGCCTCT+CGG | + | chr3.4:56975898-56975917 | MS.gene04374:CDS | 45.0% | |
| TCAGGACTCTTGATCAACAC+TGG | - | chr3.4:56974180-56974199 | None:intergenic | 45.0% | |
| TCTTGCAAACAAGGACCAAC+CGG | - | chr3.4:56975924-56975943 | None:intergenic | 45.0% | |
| ! | ATGGATGAGTTAGGCTTGGT+CGG | + | chr3.4:56974535-56974554 | MS.gene04374:intron | 45.0% |
| ! | GTGTTGATCAAGAGTCCTGA+TGG | + | chr3.4:56974180-56974199 | MS.gene04374:CDS | 45.0% |
| ! | GTTGGCTTACTGACCAACTT+GGG | + | chr3.4:56974089-56974108 | MS.gene04374:intron | 45.0% |
| !! | ATGGGTGATGGAGTATGAAG+TGG | - | chr3.4:56973828-56973847 | None:intergenic | 45.0% |
| !! | CAAGTTGGTCAGTAAGCCAA+CGG | - | chr3.4:56974090-56974109 | None:intergenic | 45.0% |
| AATGGCAGCTATGCACCAGT+AGG | - | chr3.4:56974900-56974919 | None:intergenic | 50.0% | |
| ATACTCCATCACCCATGGCT+AGG | + | chr3.4:56973832-56973851 | MS.gene04374:intron | 50.0% | |
| CTCTCTTGGACATGGCTGTT+TGG | + | chr3.4:56974284-56974303 | MS.gene04374:CDS | 50.0% | |
| GCAGCTGAGGTTATGAAGAC+TGG | + | chr3.4:56975541-56975560 | MS.gene04374:intron | 50.0% | |
| GCGAGAGCTATCTGTGAAGA+AGG | + | chr3.4:56973342-56973361 | MS.gene04374:CDS | 50.0% | |
| GGTAGCATTTCTCCTAGCCA+TGG | - | chr3.4:56973847-56973866 | None:intergenic | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | + | chr3.4:56974287-56974306 | MS.gene04374:CDS | 50.0% | |
| TTTCTCCTAGCCATGGGTGA+TGG | - | chr3.4:56973840-56973859 | None:intergenic | 50.0% | |
| !! | CGTTGGCTTACTGACCAACT+TGG | + | chr3.4:56974088-56974107 | MS.gene04374:intron | 50.0% |
| ! | TCCTGAGCTCTAGCTCCCTT+TGG | - | chr3.4:56975592-56975611 | None:intergenic | 55.0% |
| AATGTTCGACGCCTCTCGGC+CGG | + | chr3.4:56975902-56975921 | MS.gene04374:CDS | 60.0% | |
| GCCAAAGGGAGCTAGAGCTC+AGG | + | chr3.4:56975588-56975607 | MS.gene04374:CDS | 60.0% | |
| ACAAGGACCAACCGGCCGAG+AGG | - | chr3.4:56975916-56975935 | None:intergenic | 65.0% | |
| TTCGACGCCTCTCGGCCGGT+TGG | + | chr3.4:56975906-56975925 | MS.gene04374:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 56973337 | 56976039 | 56973337 | ID=MS.gene04374 |
| chr3.4 | mRNA | 56973337 | 56976039 | 56973337 | ID=MS.gene04374.t1;Parent=MS.gene04374 |
| chr3.4 | exon | 56973337 | 56973363 | 56973337 | ID=MS.gene04374.t1.exon1;Parent=MS.gene04374.t1 |
| chr3.4 | CDS | 56973337 | 56973363 | 56973337 | ID=cds.MS.gene04374.t1;Parent=MS.gene04374.t1 |
| chr3.4 | exon | 56974129 | 56974528 | 56974129 | ID=MS.gene04374.t1.exon2;Parent=MS.gene04374.t1 |
| chr3.4 | CDS | 56974129 | 56974528 | 56974129 | ID=cds.MS.gene04374.t1;Parent=MS.gene04374.t1 |
| chr3.4 | exon | 56975545 | 56975690 | 56975545 | ID=MS.gene04374.t1.exon3;Parent=MS.gene04374.t1 |
| chr3.4 | CDS | 56975545 | 56975690 | 56975545 | ID=cds.MS.gene04374.t1;Parent=MS.gene04374.t1 |
| chr3.4 | exon | 56975794 | 56976039 | 56975794 | ID=MS.gene04374.t1.exon4;Parent=MS.gene04374.t1 |
| chr3.4 | CDS | 56975794 | 56976039 | 56975794 | ID=cds.MS.gene04374.t1;Parent=MS.gene04374.t1 |
| Gene Sequence |
| Protein sequence |
