Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04375.t1 | XP_024634637.1 | 92.8 | 264 | 19 | 0 | 1 | 264 | 1 | 264 | 2.30E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04375.t1 | Q8L3W1 | 24.8 | 330 | 184 | 8 | 12 | 280 | 6 | 332 | 4.4e-22 | 106.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04375.t1 | G8A2Z5 | 74.6 | 283 | 61 | 3 | 1 | 282 | 1 | 273 | 5.4e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04375.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04375.t1 | MTR_3g061350 | 73.498 | 283 | 74 | 1 | 1 | 282 | 1 | 283 | 6.92e-150 | 421 |
| MS.gene04375.t1 | MTR_3g061320 | 73.759 | 282 | 70 | 1 | 1 | 282 | 1 | 278 | 5.29e-149 | 418 |
| MS.gene04375.t1 | MTR_3g061340 | 74.558 | 283 | 61 | 3 | 1 | 282 | 1 | 273 | 7.33e-149 | 418 |
| MS.gene04375.t1 | MTR_3g061370 | 73.145 | 283 | 72 | 2 | 1 | 282 | 1 | 280 | 1.94e-148 | 417 |
| MS.gene04375.t1 | MTR_3g061310 | 71.479 | 284 | 79 | 1 | 1 | 282 | 1 | 284 | 5.05e-146 | 411 |
| MS.gene04375.t1 | MTR_3g061330 | 73.413 | 252 | 64 | 3 | 1 | 250 | 1 | 251 | 2.47e-129 | 367 |
| MS.gene04375.t1 | MTR_3g061290 | 88.623 | 167 | 18 | 1 | 1 | 167 | 1 | 166 | 3.20e-104 | 302 |
| MS.gene04375.t1 | MTR_3g061300 | 94.488 | 127 | 7 | 0 | 161 | 287 | 1 | 127 | 6.01e-85 | 250 |
| MS.gene04375.t1 | MTR_3g061220 | 68.702 | 131 | 27 | 2 | 1 | 131 | 1 | 117 | 1.46e-57 | 180 |
| MS.gene04375.t1 | MTR_1g035460 | 35.395 | 291 | 147 | 9 | 26 | 282 | 2 | 285 | 2.04e-50 | 171 |
| MS.gene04375.t1 | MTR_8g103940 | 34.076 | 314 | 157 | 8 | 4 | 282 | 31 | 329 | 1.16e-48 | 169 |
| MS.gene04375.t1 | MTR_8g103940 | 40.816 | 98 | 50 | 3 | 189 | 282 | 400 | 493 | 1.55e-14 | 73.9 |
| MS.gene04375.t1 | MTR_1g108780 | 33.223 | 301 | 148 | 10 | 21 | 286 | 10 | 292 | 3.79e-46 | 161 |
| MS.gene04375.t1 | MTR_1g108780 | 27.178 | 287 | 172 | 11 | 12 | 287 | 201 | 461 | 1.91e-15 | 76.3 |
| MS.gene04375.t1 | MTR_5g044670 | 30.693 | 303 | 169 | 12 | 12 | 286 | 16 | 305 | 4.95e-41 | 145 |
| MS.gene04375.t1 | MTR_7g050710 | 31.987 | 297 | 178 | 8 | 9 | 282 | 10 | 305 | 5.63e-41 | 144 |
| MS.gene04375.t1 | MTR_7g050560 | 34.629 | 283 | 172 | 6 | 9 | 282 | 10 | 288 | 4.95e-40 | 142 |
| MS.gene04375.t1 | MTR_3g098790 | 31.944 | 288 | 182 | 7 | 9 | 282 | 10 | 297 | 3.58e-38 | 137 |
| MS.gene04375.t1 | MTR_7g050580 | 30.717 | 293 | 170 | 9 | 9 | 282 | 10 | 288 | 3.40e-34 | 126 |
| MS.gene04375.t1 | MTR_1g035640 | 30.314 | 287 | 173 | 7 | 12 | 285 | 9 | 281 | 1.27e-32 | 125 |
| MS.gene04375.t1 | MTR_7g050720 | 30.619 | 307 | 180 | 9 | 9 | 282 | 7 | 313 | 8.66e-32 | 120 |
| MS.gene04375.t1 | MTR_4g119990 | 30.619 | 307 | 170 | 11 | 10 | 282 | 13 | 310 | 1.01e-31 | 121 |
| MS.gene04375.t1 | MTR_7g050590 | 30.986 | 284 | 162 | 10 | 26 | 282 | 2 | 278 | 1.10e-29 | 114 |
| MS.gene04375.t1 | MTR_5g070440 | 26.855 | 283 | 166 | 6 | 11 | 285 | 20 | 269 | 5.71e-28 | 108 |
| MS.gene04375.t1 | MTR_6g043890 | 28.723 | 282 | 177 | 9 | 10 | 270 | 13 | 291 | 8.08e-28 | 110 |
| MS.gene04375.t1 | MTR_1g035570 | 28.716 | 296 | 173 | 10 | 12 | 285 | 9 | 288 | 1.37e-27 | 110 |
| MS.gene04375.t1 | MTR_3g005480 | 29.286 | 280 | 145 | 9 | 11 | 280 | 20 | 256 | 1.80e-26 | 105 |
| MS.gene04375.t1 | MTR_3g005420 | 28.671 | 286 | 157 | 8 | 11 | 285 | 288 | 537 | 5.82e-26 | 107 |
| MS.gene04375.t1 | MTR_3g005420 | 26.335 | 281 | 133 | 9 | 11 | 277 | 39 | 259 | 2.63e-20 | 90.9 |
| MS.gene04375.t1 | MTR_3g005490 | 27.465 | 284 | 154 | 7 | 11 | 285 | 20 | 260 | 1.04e-25 | 102 |
| MS.gene04375.t1 | MTR_3g005460 | 27.119 | 295 | 172 | 7 | 1 | 282 | 251 | 515 | 4.31e-25 | 104 |
| MS.gene04375.t1 | MTR_3g005460 | 25.993 | 277 | 152 | 8 | 11 | 285 | 24 | 249 | 3.70e-20 | 90.5 |
| MS.gene04375.t1 | MTR_6g061070 | 27.974 | 311 | 180 | 13 | 10 | 282 | 16 | 320 | 3.25e-24 | 102 |
| MS.gene04375.t1 | MTR_4g068320 | 31.522 | 184 | 107 | 4 | 12 | 176 | 6 | 189 | 5.02e-23 | 98.2 |
| MS.gene04375.t1 | MTR_1g035620 | 26.263 | 297 | 177 | 11 | 9 | 285 | 6 | 280 | 8.56e-22 | 94.7 |
| MS.gene04375.t1 | MTR_1g035440 | 43.269 | 104 | 56 | 2 | 10 | 110 | 13 | 116 | 4.40e-21 | 90.1 |
| MS.gene04375.t1 | MTR_1g034240 | 36.029 | 136 | 77 | 2 | 12 | 137 | 7 | 142 | 8.83e-21 | 91.7 |
| MS.gene04375.t1 | MTR_1g035650 | 43.137 | 102 | 54 | 2 | 9 | 108 | 6 | 105 | 1.42e-20 | 87.8 |
| MS.gene04375.t1 | MTR_3g005495 | 29.091 | 275 | 138 | 7 | 11 | 277 | 242 | 467 | 1.70e-20 | 91.3 |
| MS.gene04375.t1 | MTR_3g005495 | 42.857 | 84 | 48 | 0 | 25 | 108 | 28 | 111 | 2.12e-17 | 82.0 |
| MS.gene04375.t1 | MTR_7g050640 | 45.833 | 96 | 50 | 2 | 10 | 103 | 11 | 106 | 1.91e-20 | 84.7 |
| MS.gene04375.t1 | MTR_3g005420 | 26.335 | 281 | 133 | 9 | 11 | 277 | 20 | 240 | 2.72e-20 | 90.9 |
| MS.gene04375.t1 | MTR_1g050845 | 25.517 | 290 | 176 | 9 | 9 | 285 | 6 | 268 | 4.30e-20 | 90.5 |
| MS.gene04375.t1 | MTR_1g034210 | 35.294 | 136 | 76 | 3 | 12 | 137 | 7 | 140 | 4.14e-18 | 83.2 |
| MS.gene04375.t1 | MTR_1g034210 | 35.294 | 136 | 76 | 3 | 12 | 137 | 7 | 140 | 6.08e-18 | 83.2 |
| MS.gene04375.t1 | MTR_1g035510 | 27.826 | 230 | 137 | 7 | 26 | 235 | 2 | 222 | 8.88e-18 | 80.5 |
| MS.gene04375.t1 | MTR_1g021360 | 24.759 | 311 | 183 | 9 | 10 | 287 | 182 | 474 | 1.06e-17 | 83.2 |
| MS.gene04375.t1 | MTR_3g005440 | 32.759 | 116 | 78 | 0 | 13 | 128 | 23 | 138 | 1.83e-17 | 82.4 |
| MS.gene04375.t1 | MTR_3g005440 | 28.649 | 185 | 103 | 3 | 11 | 192 | 241 | 399 | 1.30e-14 | 73.9 |
| MS.gene04375.t1 | MTR_1g021270 | 22.188 | 329 | 193 | 9 | 11 | 276 | 15 | 343 | 7.28e-17 | 80.9 |
| MS.gene04375.t1 | MTR_1g035480 | 32.624 | 141 | 84 | 5 | 2 | 134 | 7 | 144 | 2.23e-16 | 75.9 |
| MS.gene04375.t1 | MTR_1g033740 | 31.034 | 145 | 90 | 5 | 10 | 147 | 20 | 161 | 3.11e-16 | 75.5 |
| MS.gene04375.t1 | MTR_1g035470 | 33.824 | 136 | 80 | 4 | 26 | 155 | 2 | 133 | 3.63e-15 | 71.2 |
| MS.gene04375.t1 | MTR_1g035500 | 32.624 | 141 | 84 | 5 | 2 | 134 | 15 | 152 | 4.93e-14 | 69.3 |
| MS.gene04375.t1 | MTR_1g035520 | 35.897 | 117 | 68 | 5 | 4 | 118 | 67 | 178 | 2.37e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04375.t1 | AT3G18990 | 26.347 | 334 | 174 | 10 | 12 | 280 | 6 | 332 | 2.64e-28 | 111 |
| MS.gene04375.t1 | AT3G18990 | 26.347 | 334 | 174 | 10 | 12 | 280 | 6 | 332 | 5.58e-28 | 111 |
| MS.gene04375.t1 | AT1G49475 | 41.525 | 118 | 65 | 3 | 12 | 127 | 34 | 149 | 3.39e-20 | 86.3 |
| MS.gene04375.t1 | AT4G01580 | 34.559 | 136 | 80 | 3 | 12 | 144 | 30 | 159 | 7.88e-20 | 85.5 |
| MS.gene04375.t1 | AT3G18960 | 38.835 | 103 | 61 | 1 | 12 | 112 | 30 | 132 | 2.53e-18 | 81.6 |
| MS.gene04375.t1 | AT3G18960 | 38.835 | 103 | 61 | 1 | 12 | 112 | 30 | 132 | 2.58e-18 | 81.3 |
| MS.gene04375.t1 | AT3G18960 | 39.773 | 88 | 53 | 0 | 25 | 112 | 8 | 95 | 2.03e-15 | 72.8 |
| MS.gene04375.t1 | AT4G33280 | 23.473 | 311 | 192 | 9 | 10 | 286 | 23 | 321 | 6.06e-15 | 74.3 |
| MS.gene04375.t1 | AT4G31640 | 25.357 | 280 | 150 | 11 | 11 | 280 | 13 | 243 | 3.17e-12 | 66.6 |
| MS.gene04375.t1 | AT5G18090 | 26.174 | 298 | 175 | 14 | 12 | 280 | 18 | 299 | 7.10e-12 | 65.1 |
Find 60 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGTGTTCCAACTTTAAA+TGG | 0.142271 | 3.4:+56982546 | MS.gene04375:intron |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3.4:+56980992 | MS.gene04375:CDS |
| AGACTCCTGATGGCACTAAA+TGG | 0.296213 | 3.4:+56980980 | MS.gene04375:CDS |
| CTCTCTTGGACATGGCTGTT+TGG | 0.307883 | 3.4:+56981074 | MS.gene04375:CDS |
| TTTCTAGTACTCTTCTGATT+TGG | 0.316148 | 3.4:-56981252 | None:intergenic |
| CAAGTCTTTGAAGATTAGAT+TGG | 0.343046 | 3.4:-56980686 | None:intergenic |
| GATACATTAACTATCACTTT+TGG | 0.350344 | 3.4:-56982778 | None:intergenic |
| TTTACTGAAAATTACTCTCT+TGG | 0.354240 | 3.4:+56981060 | MS.gene04375:CDS |
| CTACTCATTTAGCAGAAAAT+CGG | 0.355466 | 3.4:+56982420 | MS.gene04375:CDS |
| TGTTTCCTTGTAAACTCATT+TGG | 0.356165 | 3.4:-56980925 | None:intergenic |
| ATCAGAAGAGTACTAGAAAA+AGG | 0.373090 | 3.4:+56981256 | MS.gene04375:CDS |
| AGTCTATCTCTACTGCATTC+TGG | 0.373335 | 3.4:-56981146 | None:intergenic |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3.4:+56981026 | MS.gene04375:CDS |
| ACATTTCTAGCCTCACAATA+AGG | 0.400255 | 3.4:-56982639 | None:intergenic |
| TCAATAACCCCATTTAAAGT+TGG | 0.400471 | 3.4:-56982555 | None:intergenic |
| TCCTGAGCTCTAGCTCCCTT+TGG | 0.408256 | 3.4:-56982344 | None:intergenic |
| ACTGATAAACAAGAAAGATA+TGG | 0.417726 | 3.4:+56982737 | MS.gene04375:CDS |
| AAAGAACTACATCATGGAAT+TGG | 0.425827 | 3.4:+56982321 | MS.gene04375:CDS |
| AGCGTGTTCCAACTTTAAAT+GGG | 0.429597 | 3.4:+56982547 | MS.gene04375:intron |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3.4:-56980985 | None:intergenic |
| CGACCACATAAGAAAGTAAG+AGG | 0.449011 | 3.4:+56981297 | MS.gene04375:CDS |
| GTCTTTGAAGATTAGATTGG+AGG | 0.462905 | 3.4:-56980683 | None:intergenic |
| AAGTTTGATGTAGTAATACT+TGG | 0.466742 | 3.4:+56981123 | MS.gene04375:CDS |
| ACCACTTTCTCTTGCAAACA+AGG | 0.468664 | 3.4:-56982685 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3.4:+56981031 | MS.gene04375:CDS |
| TCTTGCAAACAAGGACCAAC+CGG | 0.476293 | 3.4:-56982676 | None:intergenic |
| ATACCTCTTACTTTCTTATG+TGG | 0.489376 | 3.4:-56981300 | None:intergenic |
| AATGTTCGCCGCCTCTCGGC+CGG | 0.489655 | 3.4:+56982657 | MS.gene04375:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.491592 | 3.4:+56981093 | MS.gene04375:CDS |
| AGTATGTGATGCTGCAGATT+GGG | 0.492313 | 3.4:+56982589 | MS.gene04375:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3.4:+56981027 | MS.gene04375:CDS |
| CTTACTTTCTTATGTGGTCG+AGG | 0.501623 | 3.4:-56981294 | None:intergenic |
| TACTCATTTAGCAGAAAATC+GGG | 0.503743 | 3.4:+56982421 | MS.gene04375:CDS |
| TCTTGGACATGGCTGTTTGG+TGG | 0.505898 | 3.4:+56981077 | MS.gene04375:CDS |
| TAGAAATGTTCGCCGCCTCT+CGG | 0.526048 | 3.4:+56982653 | MS.gene04375:CDS |
| TCCTTGTTTGCAAGAGAAAG+TGG | 0.529022 | 3.4:+56982684 | MS.gene04375:CDS |
| ACATCATGGAATTGGCCAAA+GGG | 0.541191 | 3.4:+56982329 | MS.gene04375:CDS |
| TCAGGAGTCTTTATCAACAC+TGG | 0.545485 | 3.4:-56980967 | None:intergenic |
| AGAGAAAGTGGTCTGCAAGT+AGG | 0.546476 | 3.4:+56982696 | MS.gene04375:CDS |
| AAGTATTACTACATCAAACT+TGG | 0.549129 | 3.4:-56981121 | None:intergenic |
| GCCAAAGGGAGCTAGAGCTC+AGG | 0.549833 | 3.4:+56982343 | MS.gene04375:CDS |
| TTCGCCGCCTCTCGGCCGGT+TGG | 0.551560 | 3.4:+56982661 | MS.gene04375:CDS |
| AAATACCAAATGAGTTTACA+AGG | 0.560882 | 3.4:+56980920 | MS.gene04375:CDS |
| ATACTCCATCACCCATGGCT+AGG | 0.561903 | 3.4:+56980622 | None:intergenic |
| GGTAGCATTTCTCCTAGCCA+TGG | 0.566519 | 3.4:-56980634 | None:intergenic |
| TGCAGATTGGGAAAAGATCA+TGG | 0.571416 | 3.4:+56982601 | MS.gene04375:CDS |
| AAGTATGTGATGCTGCAGAT+TGG | 0.577298 | 3.4:+56982588 | MS.gene04375:CDS |
| CTGGTGAAAGAACTACATCA+TGG | 0.579498 | 3.4:+56982315 | MS.gene04375:CDS |
| AGGACCAACCGGCCGAGAGG+CGG | 0.587468 | 3.4:-56982665 | None:intergenic |
| GCAGCTGAGGTTATGAAGAC+TGG | 0.589100 | 3.4:+56982296 | MS.gene04375:intron |
| TACATCATGGAATTGGCCAA+AGG | 0.610272 | 3.4:+56982328 | MS.gene04375:CDS |
| GTAGCATTTCTCCTAGCCAT+GGG | 0.612967 | 3.4:-56980633 | None:intergenic |
| GATGATGAAAATGACAATGT+TGG | 0.615278 | 3.4:+56981189 | MS.gene04375:CDS |
| GAAACTGCTTCCTTATTGTG+AGG | 0.617392 | 3.4:+56982629 | MS.gene04375:CDS |
| GCGTGTTCCAACTTTAAATG+GGG | 0.619238 | 3.4:+56982548 | MS.gene04375:intron |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.4:+56981066 | MS.gene04375:CDS |
| AATGAGTTTACAAGGAAACA+TGG | 0.634098 | 3.4:+56980928 | MS.gene04375:CDS |
| ACAAGGACCAACCGGCCGAG+AGG | 0.636650 | 3.4:-56982668 | None:intergenic |
| GTGTTGATAAAGACTCCTGA+TGG | 0.643737 | 3.4:+56980970 | MS.gene04375:CDS |
| TCATTTAGCAGAAAATCGGG+TGG | 0.719217 | 3.4:+56982424 | MS.gene04375:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACGACTTATAATAAAAT+AGG | + | chr3.4:56982130-56982149 | MS.gene04375:intron | 15.0% |
| !! | AAACGACTTATAATAAAATA+GGG | + | chr3.4:56982131-56982150 | MS.gene04375:intron | 15.0% |
| !! | AACATAATAAAATACAAAGA+GGG | - | chr3.4:56981795-56981814 | None:intergenic | 15.0% |
| !! | TAACATAATAAAATACAAAG+AGG | - | chr3.4:56981796-56981815 | None:intergenic | 15.0% |
| !!! | CATAAGTTTTTATTTATAGA+AGG | + | chr3.4:56980839-56980858 | MS.gene04375:intron | 15.0% |
| !!! | CTTTTCAATATCATTAATAA+AGG | + | chr3.4:56981941-56981960 | MS.gene04375:intron | 15.0% |
| !!! | GTATTTTATTATGTTACTTT+GGG | + | chr3.4:56981800-56981819 | MS.gene04375:intron | 15.0% |
| !!! | TATTTTATTATGTTACTTTG+GGG | + | chr3.4:56981801-56981820 | MS.gene04375:intron | 15.0% |
| !!! | TGTATTTTATTATGTTACTT+TGG | + | chr3.4:56981799-56981818 | MS.gene04375:intron | 15.0% |
| !! | ACCAAAAAAAAATTGTCAAA+AGG | - | chr3.4:56982042-56982061 | None:intergenic | 20.0% |
| !! | AGAGAATAATACCTAATAAA+GGG | - | chr3.4:56981900-56981919 | None:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | + | chr3.4:56981006-56981025 | MS.gene04375:CDS | 20.0% |
| !! | TAACTCTAAATAGTAGAAAT+CGG | - | chr3.4:56980727-56980746 | None:intergenic | 20.0% |
| !! | TATATGAGAATTGTGAAAAA+AGG | - | chr3.4:56982398-56982417 | None:intergenic | 20.0% |
| !!! | TCCTTTTGACAATTTTTTTT+TGG | + | chr3.4:56982038-56982057 | MS.gene04375:intron | 20.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3.4:56981016-56981035 | MS.gene04375:CDS | 25.0% |
| ! | AAATACCAAATGAGTTTACA+AGG | + | chr3.4:56980920-56980939 | MS.gene04375:CDS | 25.0% |
| ! | AAGTATTACTACATCAAACT+TGG | - | chr3.4:56981124-56981143 | None:intergenic | 25.0% |
| ! | AAGTTTGATGTAGTAATACT+TGG | + | chr3.4:56981123-56981142 | MS.gene04375:CDS | 25.0% |
| ! | ACTGATAAACAAGAAAGATA+TGG | + | chr3.4:56982737-56982756 | MS.gene04375:CDS | 25.0% |
| ! | AGAAAAAACCAACATGTTAT+TGG | + | chr3.4:56981673-56981692 | MS.gene04375:intron | 25.0% |
| ! | ATGATCTTGAAAAAATGGAT+TGG | - | chr3.4:56980663-56980682 | None:intergenic | 25.0% |
| ! | ATTAGTCACATTTAACAACA+TGG | + | chr3.4:56981628-56981647 | MS.gene04375:intron | 25.0% |
| ! | GAGAGAATAATACCTAATAA+AGG | - | chr3.4:56981901-56981920 | None:intergenic | 25.0% |
| ! | GTAATCTTTGGTTAGAAATA+AGG | - | chr3.4:56981599-56981618 | None:intergenic | 25.0% |
| ! | TATAGTATTTCACACTCTAT+TGG | - | chr3.4:56981563-56981582 | None:intergenic | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3.4:56981060-56981079 | MS.gene04375:CDS | 25.0% |
| ! | TTTCTATCATACCCTTTATT+AGG | + | chr3.4:56981886-56981905 | MS.gene04375:intron | 25.0% |
| !!! | AATGCTTGTTTTACCTTTTT+AGG | - | chr3.4:56981736-56981755 | None:intergenic | 25.0% |
| !!! | AGTCGTTTTGACAAATTTTT+TGG | - | chr3.4:56982119-56982138 | None:intergenic | 25.0% |
| !!! | TTAATTTGCTTCACCTAAAA+AGG | + | chr3.4:56981720-56981739 | MS.gene04375:intron | 25.0% |
| !!! | TTTTAGGTGAAGCAAATTAA+TGG | - | chr3.4:56981720-56981739 | None:intergenic | 25.0% |
| AAAAATTTAAGTGCCCAAGT+TGG | - | chr3.4:56980895-56980914 | None:intergenic | 30.0% | |
| AAAACAAGCATTCAATCTCA+TGG | + | chr3.4:56981744-56981763 | MS.gene04375:intron | 30.0% | |
| AAAGAACTACATCATGGAAT+TGG | + | chr3.4:56982321-56982340 | MS.gene04375:CDS | 30.0% | |
| AAATGTGACTAATCAAGCTA+AGG | - | chr3.4:56981621-56981640 | None:intergenic | 30.0% | |
| AAGATGAAATCCAAAGACTT+TGG | - | chr3.4:56981503-56981522 | None:intergenic | 30.0% | |
| AATCAAGCTAAGGTAATCTT+TGG | - | chr3.4:56981611-56981630 | None:intergenic | 30.0% | |
| AATGAGTTTACAAGGAAACA+TGG | + | chr3.4:56980928-56980947 | MS.gene04375:CDS | 30.0% | |
| ATACCTCTTACTTTCTTATG+TGG | - | chr3.4:56981303-56981322 | None:intergenic | 30.0% | |
| CTACTCATTTAGCAGAAAAT+CGG | + | chr3.4:56982420-56982439 | MS.gene04375:CDS | 30.0% | |
| GATGATGAAAATGACAATGT+TGG | + | chr3.4:56981189-56981208 | MS.gene04375:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3.4:56980992-56981011 | MS.gene04375:CDS | 30.0% | |
| TACTCATTTAGCAGAAAATC+GGG | + | chr3.4:56982421-56982440 | MS.gene04375:CDS | 30.0% | |
| TAGGGATATAGTACAAAAGA+TGG | + | chr3.4:56982149-56982168 | MS.gene04375:intron | 30.0% | |
| TGTTTCCTTGTAAACTCATT+TGG | - | chr3.4:56980928-56980947 | None:intergenic | 30.0% | |
| ! | AAGAAAGTAAGAGGTATGTA+TGG | + | chr3.4:56981306-56981325 | MS.gene04375:intron | 30.0% |
| ! | CAAGTCTTTGAAGATTAGAT+TGG | - | chr3.4:56980689-56980708 | None:intergenic | 30.0% |
| ! | CAGTTGAGATTTTAGATGAA+TGG | + | chr3.4:56981229-56981248 | MS.gene04375:CDS | 30.0% |
| ! | GATTTTCTGCTAAATGAGTA+GGG | - | chr3.4:56982421-56982440 | None:intergenic | 30.0% |
| ! | TCAATAACCCCATTTAAAGT+TGG | - | chr3.4:56982558-56982577 | None:intergenic | 30.0% |
| ! | TTTCTAGTACTCTTCTGATT+TGG | - | chr3.4:56981255-56981274 | None:intergenic | 30.0% |
| !! | ATCAGAAGAGTACTAGAAAA+AGG | + | chr3.4:56981256-56981275 | MS.gene04375:CDS | 30.0% |
| !! | CTTGAAAAAATGGATTGGAA+AGG | - | chr3.4:56980658-56980677 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3.4:56981093-56981112 | MS.gene04375:CDS | 30.0% |
| AGCGTGTTCCAACTTTAAAT+GGG | + | chr3.4:56982547-56982566 | MS.gene04375:intron | 35.0% | |
| ATGTCTATGACCAAAGTCTT+TGG | + | chr3.4:56981490-56981509 | MS.gene04375:intron | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3.4:56981066-56981085 | MS.gene04375:CDS | 35.0% | |
| GAATACTAATTTGACACCGT+TGG | + | chr3.4:56980861-56980880 | MS.gene04375:intron | 35.0% | |
| GGAGGATGATCTTGAAAAAA+TGG | - | chr3.4:56980668-56980687 | None:intergenic | 35.0% | |
| ! | CGATTTTCTGCTAAATGAGT+AGG | - | chr3.4:56982422-56982441 | None:intergenic | 35.0% |
| ! | GTCTTTGAAGATTAGATTGG+AGG | - | chr3.4:56980686-56980705 | None:intergenic | 35.0% |
| !! | ACATTTCTAGCCTCACAATA+AGG | - | chr3.4:56982642-56982661 | None:intergenic | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3.4:56981031-56981050 | MS.gene04375:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3.4:56981027-56981046 | MS.gene04375:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3.4:56981026-56981045 | MS.gene04375:CDS | 35.0% |
| AAGTATGTGATGCTGCAGAT+TGG | + | chr3.4:56982588-56982607 | MS.gene04375:CDS | 40.0% | |
| ACATCATGGAATTGGCCAAA+GGG | + | chr3.4:56982329-56982348 | MS.gene04375:CDS | 40.0% | |
| ACATGTTATTGGCATCCTAC+TGG | + | chr3.4:56981684-56981703 | MS.gene04375:intron | 40.0% | |
| ACCACTTTCTCTTGCAAACA+AGG | - | chr3.4:56982688-56982707 | None:intergenic | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3.4:56980988-56981007 | None:intergenic | 40.0% | |
| AGTATGTGATGCTGCAGATT+GGG | + | chr3.4:56982589-56982608 | MS.gene04375:CDS | 40.0% | |
| AGTCTATCTCTACTGCATTC+TGG | - | chr3.4:56981149-56981168 | None:intergenic | 40.0% | |
| ATGTATGGATGAGTTAGGCT+TGG | + | chr3.4:56981321-56981340 | MS.gene04375:intron | 40.0% | |
| CACACAAATATATGCAGCTG+AGG | + | chr3.4:56982283-56982302 | MS.gene04375:intron | 40.0% | |
| CAGCGTGTTCCAACTTTAAA+TGG | + | chr3.4:56982546-56982565 | MS.gene04375:intron | 40.0% | |
| CGACCACATAAGAAAGTAAG+AGG | + | chr3.4:56981297-56981316 | MS.gene04375:CDS | 40.0% | |
| CTCAGCTGCATATATTTGTG+TGG | - | chr3.4:56982285-56982304 | None:intergenic | 40.0% | |
| CTGGTGAAAGAACTACATCA+TGG | + | chr3.4:56982315-56982334 | MS.gene04375:CDS | 40.0% | |
| CTTACTTTCTTATGTGGTCG+AGG | - | chr3.4:56981297-56981316 | None:intergenic | 40.0% | |
| GAAACTGCTTCCTTATTGTG+AGG | + | chr3.4:56982629-56982648 | MS.gene04375:CDS | 40.0% | |
| GAGGTATGTATGGATGAGTT+AGG | + | chr3.4:56981316-56981335 | MS.gene04375:intron | 40.0% | |
| GCGTGTTCCAACTTTAAATG+GGG | + | chr3.4:56982548-56982567 | MS.gene04375:intron | 40.0% | |
| GTAGGATGCCAATAACATGT+TGG | - | chr3.4:56981684-56981703 | None:intergenic | 40.0% | |
| TACATCATGGAATTGGCCAA+AGG | + | chr3.4:56982328-56982347 | MS.gene04375:CDS | 40.0% | |
| TCAGGAGTCTTTATCAACAC+TGG | - | chr3.4:56980970-56980989 | None:intergenic | 40.0% | |
| TCATTTAGCAGAAAATCGGG+TGG | + | chr3.4:56982424-56982443 | MS.gene04375:CDS | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | chr3.4:56982601-56982620 | MS.gene04375:CDS | 40.0% | |
| ! | GTGTTGATAAAGACTCCTGA+TGG | + | chr3.4:56980970-56980989 | MS.gene04375:CDS | 40.0% |
| ! | TCATGATGCTTGACGTTTTC+AGG | - | chr3.4:56982190-56982209 | None:intergenic | 40.0% |
| ! | TCCTTGTTTGCAAGAGAAAG+TGG | + | chr3.4:56982684-56982703 | MS.gene04375:CDS | 40.0% |
| AGACTCCTGATGGCACTAAA+TGG | + | chr3.4:56980980-56980999 | MS.gene04375:CDS | 45.0% | |
| AGAGAAAGTGGTCTGCAAGT+AGG | + | chr3.4:56982696-56982715 | MS.gene04375:CDS | 45.0% | |
| TCTTGCAAACAAGGACCAAC+CGG | - | chr3.4:56982679-56982698 | None:intergenic | 45.0% | |
| ! | ATGGATGAGTTAGGCTTGGT+CGG | + | chr3.4:56981325-56981344 | MS.gene04375:intron | 45.0% |
| ! | GTTGGCTTACTGACCAACTT+GGG | + | chr3.4:56980879-56980898 | MS.gene04375:intron | 45.0% |
| !! | CAAGTTGGTCAGTAAGCCAA+CGG | - | chr3.4:56980880-56980899 | None:intergenic | 45.0% |
| AATGGCAGCTATGCACCAGT+AGG | - | chr3.4:56981702-56981721 | None:intergenic | 50.0% | |
| CTCTCTTGGACATGGCTGTT+TGG | + | chr3.4:56981074-56981093 | MS.gene04375:CDS | 50.0% | |
| GCAGCTGAGGTTATGAAGAC+TGG | + | chr3.4:56982296-56982315 | MS.gene04375:intron | 50.0% | |
| TAGAAATGTTCGCCGCCTCT+CGG | + | chr3.4:56982653-56982672 | MS.gene04375:CDS | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | + | chr3.4:56981077-56981096 | MS.gene04375:CDS | 50.0% | |
| !! | CGTTGGCTTACTGACCAACT+TGG | + | chr3.4:56980878-56980897 | MS.gene04375:intron | 50.0% |
| ! | TCCTGAGCTCTAGCTCCCTT+TGG | - | chr3.4:56982347-56982366 | None:intergenic | 55.0% |
| GCCAAAGGGAGCTAGAGCTC+AGG | + | chr3.4:56982343-56982362 | MS.gene04375:CDS | 60.0% | |
| AATGTTCGCCGCCTCTCGGC+CGG | + | chr3.4:56982657-56982676 | MS.gene04375:CDS | 65.0% | |
| ACAAGGACCAACCGGCCGAG+AGG | - | chr3.4:56982671-56982690 | None:intergenic | 65.0% | |
| AGGACCAACCGGCCGAGAGG+CGG | - | chr3.4:56982668-56982687 | None:intergenic | 70.0% | |
| TTCGCCGCCTCTCGGCCGGT+TGG | + | chr3.4:56982661-56982680 | MS.gene04375:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 56980636 | 56982794 | 56980636 | ID=MS.gene04375 |
| chr3.4 | mRNA | 56980636 | 56982794 | 56980636 | ID=MS.gene04375.t1;Parent=MS.gene04375 |
| chr3.4 | exon | 56980636 | 56980707 | 56980636 | ID=MS.gene04375.t1.exon1;Parent=MS.gene04375.t1 |
| chr3.4 | CDS | 56980636 | 56980707 | 56980636 | ID=cds.MS.gene04375.t1;Parent=MS.gene04375.t1 |
| chr3.4 | exon | 56980919 | 56981318 | 56980919 | ID=MS.gene04375.t1.exon2;Parent=MS.gene04375.t1 |
| chr3.4 | CDS | 56980919 | 56981318 | 56980919 | ID=cds.MS.gene04375.t1;Parent=MS.gene04375.t1 |
| chr3.4 | exon | 56982300 | 56982445 | 56982300 | ID=MS.gene04375.t1.exon3;Parent=MS.gene04375.t1 |
| chr3.4 | CDS | 56982300 | 56982445 | 56982300 | ID=cds.MS.gene04375.t1;Parent=MS.gene04375.t1 |
| chr3.4 | exon | 56982549 | 56982794 | 56982549 | ID=MS.gene04375.t1.exon4;Parent=MS.gene04375.t1 |
| chr3.4 | CDS | 56982549 | 56982794 | 56982549 | ID=cds.MS.gene04375.t1;Parent=MS.gene04375.t1 |
| Gene Sequence |
| Protein sequence |
