Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043751.t1 | XP_003622663.1 | 69.3 | 316 | 19 | 2 | 1 | 239 | 1 | 315 | 1.20E-109 | 406 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043751.t1 | Q9XIB5 | 27.4 | 219 | 136 | 8 | 4 | 214 | 18 | 221 | 1.9e-10 | 67.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043751.t1 | G7KVV4 | 69.3 | 316 | 19 | 2 | 1 | 239 | 1 | 315 | 8.8e-110 | 406.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043751.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043751.t1 | MTR_7g050560 | 91.981 | 212 | 16 | 1 | 28 | 239 | 105 | 315 | 4.25e-144 | 405 |
| MS.gene043751.t1 | MTR_7g050590 | 72.350 | 217 | 42 | 5 | 28 | 227 | 78 | 293 | 3.08e-106 | 309 |
| MS.gene043751.t1 | MTR_7g050580 | 62.555 | 227 | 54 | 6 | 28 | 239 | 105 | 315 | 3.34e-86 | 258 |
| MS.gene043751.t1 | MTR_3g098790 | 62.037 | 216 | 58 | 6 | 28 | 227 | 105 | 312 | 2.46e-82 | 249 |
| MS.gene043751.t1 | MTR_7g050710 | 61.927 | 218 | 63 | 6 | 28 | 227 | 105 | 320 | 6.92e-80 | 243 |
| MS.gene043751.t1 | MTR_7g050720 | 52.074 | 217 | 75 | 8 | 28 | 216 | 102 | 317 | 2.04e-62 | 198 |
| MS.gene043751.t1 | MTR_1g108780 | 34.722 | 144 | 79 | 4 | 71 | 214 | 162 | 290 | 1.70e-19 | 87.0 |
| MS.gene043751.t1 | MTR_1g035460 | 30.631 | 222 | 107 | 7 | 28 | 214 | 78 | 287 | 8.46e-17 | 79.0 |
| MS.gene043751.t1 | MTR_8g103940 | 40.833 | 120 | 60 | 2 | 95 | 214 | 223 | 331 | 9.78e-17 | 79.0 |
| MS.gene043751.t1 | MTR_4g068320 | 35.075 | 134 | 78 | 5 | 88 | 219 | 267 | 393 | 1.17e-14 | 72.8 |
| MS.gene043751.t1 | MTR_1g034240 | 31.126 | 151 | 92 | 5 | 88 | 233 | 272 | 415 | 4.77e-14 | 71.2 |
| MS.gene043751.t1 | MTR_3g061370 | 35.593 | 118 | 67 | 3 | 97 | 213 | 172 | 281 | 2.59e-12 | 65.5 |
| MS.gene043751.t1 | MTR_1g021320 | 34.559 | 136 | 79 | 5 | 77 | 206 | 463 | 594 | 7.22e-12 | 65.1 |
| MS.gene043751.t1 | MTR_5g044670 | 34.483 | 116 | 66 | 4 | 104 | 217 | 199 | 306 | 2.80e-11 | 62.8 |
| MS.gene043751.t1 | MTR_1g021270 | 27.273 | 209 | 134 | 7 | 33 | 235 | 173 | 369 | 6.06e-11 | 62.0 |
| MS.gene043751.t1 | MTR_3g061350 | 35.043 | 117 | 69 | 3 | 97 | 213 | 175 | 284 | 9.36e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043751.t1 | AT3G18990 | 29.293 | 198 | 121 | 7 | 20 | 217 | 161 | 339 | 2.19e-14 | 72.0 |
Find 39 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7.4:-53405396 | MS.gene043751:CDS |
| GATCAAAATGTGGTCCTTTA+AGG | 0.186650 | 7.4:+53405347 | None:intergenic |
| GGAACACCGATTTCTTATTA+TGG | 0.238357 | 7.4:-53405868 | MS.gene043751:intron |
| GAGAAGCTTCTTCTTTCATT+TGG | 0.276874 | 7.4:+53405081 | None:intergenic |
| CTAATCAGGATGACCCTTAA+AGG | 0.296784 | 7.4:-53405361 | MS.gene043751:CDS |
| GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7.4:+53406219 | None:intergenic |
| CCAAAGAGTTGCAGCTAAAA+AGG | 0.311285 | 7.4:-53406197 | MS.gene043751:CDS |
| TTCCATCAACCACGTGAAAT+AGG | 0.327923 | 7.4:-53406133 | MS.gene043751:CDS |
| CTTTAAGGGTCATCCTGATT+AGG | 0.351706 | 7.4:+53405362 | None:intergenic |
| AGAAGCTTCTTCTTTCATTT+GGG | 0.353013 | 7.4:+53405082 | None:intergenic |
| ATCCTGATTAGGTACTTTGC+AGG | 0.384916 | 7.4:+53405373 | None:intergenic |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7.4:-53405443 | MS.gene043751:CDS |
| TTCCTATTTCACGTGGTTGA+TGG | 0.411563 | 7.4:+53406131 | None:intergenic |
| GTTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7.4:-53405403 | MS.gene043751:CDS |
| GGCCTGCAAAGTACCTAATC+AGG | 0.423211 | 7.4:-53405375 | MS.gene043751:CDS |
| CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7.4:-53405463 | MS.gene043751:CDS |
| ATCAAAATGTGGTCCTTTAA+GGG | 0.437280 | 7.4:+53405348 | None:intergenic |
| AACTTACCATAATAAGAAAT+CGG | 0.464762 | 7.4:+53405862 | None:intergenic |
| TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7.4:-53406095 | MS.gene043751:CDS |
| AAGTGGATTGGCTTCACCTC+AGG | 0.494267 | 7.4:+53407210 | None:intergenic |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.4:-53405298 | MS.gene043751:CDS |
| TTAGCTGCAACTCTTTGGAA+TGG | 0.508092 | 7.4:+53406202 | None:intergenic |
| TCTAAAGATATGAACAATGA+AGG | 0.545794 | 7.4:+53405234 | None:intergenic |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.4:+53405903 | None:intergenic |
| TGATCTCACAACTGGATGGA+AGG | 0.549699 | 7.4:-53405329 | MS.gene043751:CDS |
| CTTGCTCAAAATCTTCATGA+AGG | 0.562390 | 7.4:-53407174 | MS.gene043751:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.4:-53405430 | MS.gene043751:CDS |
| CCACGTGAAATAGGAAGCAA+TGG | 0.577300 | 7.4:-53406124 | MS.gene043751:CDS |
| GTAGCAACTTTGCATCATGC+TGG | 0.604292 | 7.4:-53406073 | MS.gene043751:CDS |
| CCATTGCTTCCTATTTCACG+TGG | 0.606111 | 7.4:+53406124 | None:intergenic |
| ATGAAAGAAGAAGCTTCTCA+AGG | 0.617350 | 7.4:-53405077 | MS.gene043751:CDS |
| TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7.4:+53406144 | None:intergenic |
| TGGATGGAAGGCATTTGCAA+AGG | 0.644602 | 7.4:-53405317 | MS.gene043751:CDS |
| CATGGCTAGTGAAACTCCTG+AGG | 0.673676 | 7.4:-53407226 | MS.gene043751:CDS |
| TGTCATGCGTGCATCATACG+TGG | 0.677837 | 7.4:-53405889 | MS.gene043751:CDS |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.4:+53405899 | None:intergenic |
| CCAGTTGTGAGATCAAAATG+TGG | 0.701103 | 7.4:+53405337 | None:intergenic |
| CATGCTGGCAGAGAGTCCAA+AGG | 0.714363 | 7.4:-53406058 | MS.gene043751:intron |
| TGTCTATTACCAAACGAACG+TGG | 0.725731 | 7.4:+53405454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCACATAAATGTTTAT+TGG | - | chr7.4:53406675-53406694 | MS.gene043751:intron | 15.0% |
| !! | AAAAATTAGAAAGTTCTTGT+TGG | + | chr7.4:53406784-53406803 | None:intergenic | 20.0% |
| !! | AACTTACCATAATAAGAAAT+CGG | + | chr7.4:53406439-53406458 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAGGTTCAAAT+TGG | + | chr7.4:53405530-53405549 | None:intergenic | 20.0% |
| !! | TATCTGATTGAATAATTGTT+AGG | + | chr7.4:53406656-53406675 | None:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.4:53405918-53405937 | MS.gene043751:CDS | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | chr7.4:53405931-53405950 | MS.gene043751:CDS | 20.0% |
| !!! | AATTACTTAGTTTTCTAATC+AGG | + | chr7.4:53405741-53405760 | None:intergenic | 20.0% |
| !!! | CATTTATCTTTTCTTTTGAT+TGG | - | chr7.4:53406812-53406831 | MS.gene043751:intron | 20.0% |
| !!! | GTTTATTTGTTGTTAAATGA+AGG | - | chr7.4:53406895-53406914 | MS.gene043751:intron | 20.0% |
| !!! | TAAATAGTGATGGAAAAATA+TGG | - | chr7.4:53405941-53405960 | MS.gene043751:CDS | 20.0% |
| !!! | TGTAATTAGAAATTCAAGTT+TGG | - | chr7.4:53405597-53405616 | MS.gene043751:intron | 20.0% |
| !!! | TTTTCTGATAAATGTGATTT+AGG | - | chr7.4:53405760-53405779 | MS.gene043751:intron | 20.0% |
| !!! | TTTTTAGTAAATAGACGAAA+TGG | + | chr7.4:53405480-53405499 | None:intergenic | 20.0% |
| ! | AAAAAAAATATGTCGCTACA+TGG | - | chr7.4:53405496-53405515 | MS.gene043751:intron | 25.0% |
| ! | AAATATGGTTTGAAAAAGGT+TGG | - | chr7.4:53405956-53405975 | MS.gene043751:CDS | 25.0% |
| ! | AATAAGAGAATCTAAGTCAA+AGG | + | chr7.4:53405162-53405181 | None:intergenic | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.4:53405895-53405914 | MS.gene043751:CDS | 25.0% |
| ! | ATTATCTTGAAAAAGTGGAT+TGG | + | chr7.4:53405103-53405122 | None:intergenic | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+TGG | + | chr7.4:53405108-53405127 | None:intergenic | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | + | chr7.4:53406082-53406101 | None:intergenic | 25.0% |
| ! | GGAAAAATATGGTTTGAAAA+AGG | - | chr7.4:53405952-53405971 | MS.gene043751:CDS | 25.0% |
| ! | TACTATCATGCATACTAATT+TGG | - | chr7.4:53405805-53405824 | MS.gene043751:intron | 25.0% |
| ! | TATTATGACACAAGATTTGT+TGG | - | chr7.4:53405285-53405304 | MS.gene043751:CDS | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | + | chr7.4:53407067-53407086 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7.4:53406306-53406325 | None:intergenic | 25.0% |
| ! | TGTTGTTAAATGAAGGAATT+TGG | - | chr7.4:53406902-53406921 | MS.gene043751:intron | 25.0% |
| !! | ACAAATATGCCGAAATTTTT+AGG | - | chr7.4:53405386-53405405 | MS.gene043751:CDS | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | - | chr7.4:53406306-53406325 | MS.gene043751:intron | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.4:53406305-53406324 | MS.gene043751:intron | 25.0% |
| AAGGACAATAACTTGAAAGT+TGG | - | chr7.4:53407000-53407019 | MS.gene043751:intron | 30.0% | |
| AGAAAGTTTGTCGAGAAATA+TGG | - | chr7.4:53405853-53405872 | MS.gene043751:intron | 30.0% | |
| AGAAGCTTCTTCTTTCATTT+GGG | + | chr7.4:53407219-53407238 | None:intergenic | 30.0% | |
| ATCAAAATGTGGTCCTTTAA+GGG | + | chr7.4:53406953-53406972 | None:intergenic | 30.0% | |
| ATTGTTCAACATCTCAAAGT+AGG | - | chr7.4:53407109-53407128 | MS.gene043751:intron | 30.0% | |
| GACTCAATCTTATATACCTT+TGG | + | chr7.4:53406259-53406278 | None:intergenic | 30.0% | |
| GATATTTGAAAAGCAGAAGA+TGG | + | chr7.4:53406017-53406036 | None:intergenic | 30.0% | |
| GTTTCATTAGGCTACAAATT+TGG | + | chr7.4:53405653-53405672 | None:intergenic | 30.0% | |
| TATTTCTCGACAAACTTTCT+TGG | + | chr7.4:53405853-53405872 | None:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | chr7.4:53406203-53406222 | MS.gene043751:CDS | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7.4:53406855-53406874 | MS.gene043751:intron | 30.0% | |
| TTAGTTGAGATAGGACTTAT+GGG | + | chr7.4:53405367-53405386 | None:intergenic | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | - | chr7.4:53405197-53405216 | MS.gene043751:CDS | 30.0% | |
| TTGTAGCCTAATGAAACTAT+GGG | - | chr7.4:53405656-53405675 | MS.gene043751:intron | 30.0% | |
| TTTCTTGCAAAACACATTAG+TGG | + | chr7.4:53405570-53405589 | None:intergenic | 30.0% | |
| TTTGTAGCCTAATGAAACTA+TGG | - | chr7.4:53405655-53405674 | MS.gene043751:intron | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.4:53405913-53405932 | None:intergenic | 30.0% |
| ! | ACTAATGTGTTTTGCAAGAA+AGG | - | chr7.4:53405569-53405588 | MS.gene043751:intron | 30.0% |
| ! | ATTTGTTGGTCATAGTTTGT+GGG | - | chr7.4:53405299-53405318 | MS.gene043751:CDS | 30.0% |
| ! | CTAATGTGTTTTGCAAGAAA+GGG | - | chr7.4:53405570-53405589 | MS.gene043751:intron | 30.0% |
| ! | GCATATTTGTTAGTTGAGAT+AGG | + | chr7.4:53405376-53405395 | None:intergenic | 30.0% |
| ! | TAATGTGTTTTGCAAGAAAG+GGG | - | chr7.4:53405571-53405590 | MS.gene043751:intron | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7.4:53406868-53406887 | MS.gene043751:intron | 30.0% |
| !!! | ATATGCCGAAATTTTTAGGT+CGG | - | chr7.4:53405390-53405409 | MS.gene043751:CDS | 30.0% |
| AAAGAATTTCCCAGCTCAAA+TGG | - | chr7.4:53406625-53406644 | MS.gene043751:intron | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | + | chr7.4:53406599-53406618 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAGCTTCTCA+AGG | - | chr7.4:53407221-53407240 | MS.gene043751:CDS | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | + | chr7.4:53406600-53406619 | None:intergenic | 35.0% | |
| CATAAACTCACACACATAAG+TGG | + | chr7.4:53405448-53405467 | None:intergenic | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | chr7.4:53405124-53405143 | MS.gene043751:intron | 35.0% | |
| CTTTCTCAACAAGAACCAAT+TGG | + | chr7.4:53406609-53406628 | None:intergenic | 35.0% | |
| GACATCCGACCTAAAAATTT+CGG | + | chr7.4:53405398-53405417 | None:intergenic | 35.0% | |
| GAGAAGCTTCTTCTTTCATT+TGG | + | chr7.4:53407220-53407239 | None:intergenic | 35.0% | |
| GATCAAAATGTGGTCCTTTA+AGG | + | chr7.4:53406954-53406973 | None:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | chr7.4:53406451-53406470 | MS.gene043751:intron | 35.0% | |
| GTTAGTTGAGATAGGACTTA+TGG | + | chr7.4:53405368-53405387 | None:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | chr7.4:53406591-53406610 | MS.gene043751:intron | 35.0% | |
| TCATTAGGCTACAAATTTGG+TGG | + | chr7.4:53405650-53405669 | None:intergenic | 35.0% | |
| TTTGTCGAGAAATATGGAGA+AGG | - | chr7.4:53405859-53405878 | MS.gene043751:intron | 35.0% | |
| ! | AGCTTTTCTCTTTTGACCAT+TGG | + | chr7.4:53406130-53406149 | None:intergenic | 35.0% |
| ! | GGTTGACTAGTGTTTTATGA+TGG | - | chr7.4:53405618-53405637 | MS.gene043751:intron | 35.0% |
| !! | ATTTTGATCTCACAACTGGA+TGG | - | chr7.4:53406965-53406984 | MS.gene043751:intron | 35.0% |
| !! | GATTTGTTGGTCATAGTTTG+TGG | - | chr7.4:53405298-53405317 | MS.gene043751:CDS | 35.0% |
| !! | GGAACACCGATTTCTTATTA+TGG | - | chr7.4:53406430-53406449 | MS.gene043751:intron | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | + | chr7.4:53406157-53406176 | None:intergenic | 35.0% |
| AAACTCACACACATAAGTGG+AGG | + | chr7.4:53405445-53405464 | None:intergenic | 40.0% | |
| AATTTCCCAGCTCAAATGGA+GGG | - | chr7.4:53406629-53406648 | MS.gene043751:intron | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.4:53405905-53405924 | MS.gene043751:CDS | 40.0% | |
| ATCCTGATTAGGTACTTTGC+AGG | + | chr7.4:53406928-53406947 | None:intergenic | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | - | chr7.4:53406835-53406854 | MS.gene043751:intron | 40.0% | |
| CCAAAGAGTTGCAGCTAAAA+AGG | - | chr7.4:53406101-53406120 | MS.gene043751:CDS | 40.0% | |
| CCAGTTGTGAGATCAAAATG+TGG | + | chr7.4:53406964-53406983 | None:intergenic | 40.0% | |
| CTAATCAGGATGACCCTTAA+AGG | - | chr7.4:53406937-53406956 | MS.gene043751:intron | 40.0% | |
| GTAGCGACATAGATGAGTAA+AGG | + | chr7.4:53405340-53405359 | None:intergenic | 40.0% | |
| TGCAGCCTGTTTACTCAATT+CGG | - | chr7.4:53405683-53405702 | MS.gene043751:intron | 40.0% | |
| TGTCTATTACCAAACGAACG+TGG | + | chr7.4:53406847-53406866 | None:intergenic | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | - | chr7.4:53406165-53406184 | MS.gene043751:CDS | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | + | chr7.4:53406170-53406189 | None:intergenic | 40.0% | |
| ! | CTTTAAGGGTCATCCTGATT+AGG | + | chr7.4:53406939-53406958 | None:intergenic | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+TGG | + | chr7.4:53406099-53406118 | None:intergenic | 40.0% |
| !! | CCACATTTTGATCTCACAAC+TGG | - | chr7.4:53406961-53406980 | MS.gene043751:intron | 40.0% |
| !!! | CCTTTTTAGCTGCAACTCTT+TGG | + | chr7.4:53406104-53406123 | None:intergenic | 40.0% |
| AGCCTAATGAAACTATGGGC+TGG | - | chr7.4:53405660-53405679 | MS.gene043751:intron | 45.0% | |
| CACCAGCCCATAGTTTCATT+AGG | + | chr7.4:53405665-53405684 | None:intergenic | 45.0% | |
| CCACGTGAAATAGGAAGCAA+TGG | - | chr7.4:53406174-53406193 | MS.gene043751:CDS | 45.0% | |
| CCATTGCTTCCTATTTCACG+TGG | + | chr7.4:53406177-53406196 | None:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7.4:53406398-53406417 | None:intergenic | 45.0% | |
| GAATTTCCCAGCTCAAATGG+AGG | - | chr7.4:53406628-53406647 | MS.gene043751:intron | 45.0% | |
| GCAGCTAAAAAGGTCTCCAA+TGG | - | chr7.4:53406111-53406130 | MS.gene043751:CDS | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | - | chr7.4:53406225-53406244 | MS.gene043751:CDS | 45.0% | |
| TGATCTCACAACTGGATGGA+AGG | - | chr7.4:53406969-53406988 | MS.gene043751:intron | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7.4:53406402-53406421 | None:intergenic | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | chr7.4:53405692-53405711 | MS.gene043751:intron | 45.0% | |
| TTTAGGTCGGATGTCATGAC+CGG | - | chr7.4:53405403-53405422 | MS.gene043751:CDS | 45.0% | |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | chr7.4:53405709-53405728 | None:intergenic | 45.0% |
| ! | CTATACGTATGCACTGACGA+AGG | - | chr7.4:53406483-53406502 | MS.gene043751:intron | 45.0% |
| !! | ACACATAAGTGGAGGTGTCA+GGG | + | chr7.4:53405437-53405456 | None:intergenic | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | - | chr7.4:53406981-53407000 | MS.gene043751:intron | 45.0% |
| !! | TTGGCTTGGACAAGTTAGGT+CGG | - | chr7.4:53405711-53405730 | MS.gene043751:intron | 45.0% |
| !! | TAAAAAAATTAAGAAAAAAA+AGG | + | chr7.4:53405540-53405559 | None:intergenic | 5.0% |
| !! | TATTAATAGATATATTATAA+TGG | - | chr7.4:53406700-53406719 | MS.gene043751:intron | 5.0% |
| !!! | TTTTCTTAATTTTTTTATTT+TGG | - | chr7.4:53405543-53405562 | MS.gene043751:intron | 5.0% |
| GTGGGCCGAATTGAGTAAAC+AGG | + | chr7.4:53405691-53405710 | None:intergenic | 50.0% | |
| TAGGACCCTCCATTTGAGCT+GGG | + | chr7.4:53406637-53406656 | None:intergenic | 50.0% | |
| TGTCATGCGTGCATCATACG+TGG | - | chr7.4:53406409-53406428 | MS.gene043751:intron | 50.0% | |
| TTAGGACCCTCCATTTGAGC+TGG | + | chr7.4:53406638-53406657 | None:intergenic | 50.0% | |
| TTAGGTCGGATGTCATGACC+GGG | - | chr7.4:53405404-53405423 | MS.gene043751:CDS | 50.0% | |
| ! | CCTAACTTGTCCAAGCCAAG+TGG | + | chr7.4:53405710-53405729 | None:intergenic | 50.0% |
| ! | GAGCATCACTCTCTAGCTCA+TGG | - | chr7.4:53405991-53406010 | MS.gene043751:intron | 50.0% |
| ! | GGCCTGCAAAGTACCTAATC+AGG | - | chr7.4:53406923-53406942 | MS.gene043751:intron | 50.0% |
| ! | TGGCTTGGACAAGTTAGGTC+GGG | - | chr7.4:53405712-53405731 | MS.gene043751:intron | 50.0% |
| !! | AAGTGGATTGGCTTCACCTC+AGG | + | chr7.4:53405091-53405110 | None:intergenic | 50.0% |
| !! | CACACATAAGTGGAGGTGTC+AGG | + | chr7.4:53405438-53405457 | None:intergenic | 50.0% |
| !! | CCACTTGGCTTGGACAAGTT+AGG | - | chr7.4:53405707-53405726 | MS.gene043751:intron | 50.0% |
| CATGCTGGCAGAGAGTCCAA+AGG | - | chr7.4:53406240-53406259 | MS.gene043751:intron | 55.0% | |
| TAGGTCGGATGTCATGACCG+GGG | - | chr7.4:53405405-53405424 | MS.gene043751:CDS | 55.0% | |
| TCAATTCGGCCCACTTGGCT+TGG | - | chr7.4:53405697-53405716 | MS.gene043751:intron | 55.0% | |
| AGGTGTCAGGGTTCGAACCC+CGG | + | chr7.4:53405425-53405444 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 53405073 | 53407247 | 53405073 | ID=MS.gene043751 |
| chr7.4 | mRNA | 53405073 | 53407247 | 53405073 | ID=MS.gene043751.t1;Parent=MS.gene043751 |
| chr7.4 | exon | 53407167 | 53407247 | 53407167 | ID=MS.gene043751.t1.exon1;Parent=MS.gene043751.t1 |
| chr7.4 | CDS | 53407167 | 53407247 | 53407167 | ID=cds.MS.gene043751.t1;Parent=MS.gene043751.t1 |
| chr7.4 | exon | 53406059 | 53406245 | 53406059 | ID=MS.gene043751.t1.exon2;Parent=MS.gene043751.t1 |
| chr7.4 | CDS | 53406059 | 53406245 | 53406059 | ID=cds.MS.gene043751.t1;Parent=MS.gene043751.t1 |
| chr7.4 | exon | 53405869 | 53405993 | 53405869 | ID=MS.gene043751.t1.exon3;Parent=MS.gene043751.t1 |
| chr7.4 | CDS | 53405869 | 53405993 | 53405869 | ID=cds.MS.gene043751.t1;Parent=MS.gene043751.t1 |
| chr7.4 | exon | 53405194 | 53405482 | 53405194 | ID=MS.gene043751.t1.exon4;Parent=MS.gene043751.t1 |
| chr7.4 | CDS | 53405194 | 53405482 | 53405194 | ID=cds.MS.gene043751.t1;Parent=MS.gene043751.t1 |
| chr7.4 | exon | 53405073 | 53405110 | 53405073 | ID=MS.gene043751.t1.exon5;Parent=MS.gene043751.t1 |
| chr7.4 | CDS | 53405073 | 53405110 | 53405073 | ID=cds.MS.gene043751.t1;Parent=MS.gene043751.t1 |
| Gene Sequence |
| Protein sequence |
