AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043768

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043768.t1 MTR_2g461240 97.581 372 2 2 1 370 1 367 0.0 748
MS.gene043768.t1 MTR_4g116545 73.889 360 61 7 1 357 1 330 1.34e-180 504
MS.gene043768.t1 MTR_4g116545 72.118 373 69 8 1 370 1 341 4.09e-180 503
MS.gene043768.t1 MTR_1g012960 81.413 269 46 2 95 359 169 437 1.02e-164 468
MS.gene043768.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 1.93e-157 447
MS.gene043768.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 2.01e-157 447
MS.gene043768.t1 MTR_3g106400 66.667 345 83 7 42 357 29 370 7.78e-157 447
MS.gene043768.t1 MTR_5g011070 67.669 266 80 2 98 357 26 291 3.63e-127 367
MS.gene043768.t1 MTR_1g017080 33.333 243 142 5 100 342 120 342 4.59e-29 116
MS.gene043768.t1 MTR_1g084060 34.146 246 139 6 100 342 20 245 8.68e-29 113
MS.gene043768.t1 MTR_2g024390 31.020 245 142 6 100 342 118 337 1.16e-28 115
MS.gene043768.t1 MTR_1g084060 34.146 246 139 6 100 342 20 245 1.29e-28 113
MS.gene043768.t1 MTR_5g033720 34.553 246 134 5 100 342 73 294 1.93e-28 113
MS.gene043768.t1 MTR_5g085860 31.174 247 130 4 103 342 50 263 2.26e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043768.t1 AT5G25220 81.655 278 44 3 97 370 157 431 2.15e-165 469
MS.gene043768.t1 AT5G11060 82.909 275 39 4 97 367 121 391 3.51e-165 468
MS.gene043768.t1 AT5G25220 84.906 265 33 3 97 357 157 418 7.00e-164 465
MS.gene043768.t1 AT4G32040 74.906 267 63 4 97 360 116 381 1.20e-142 410
MS.gene043768.t1 AT4G32040 77.419 248 53 3 97 342 116 362 9.28e-142 407
MS.gene043768.t1 AT1G62990 66.791 268 86 3 93 357 23 290 1.53e-127 368
MS.gene043768.t1 AT1G70510 33.730 252 144 6 91 342 61 289 7.08e-31 119
MS.gene043768.t1 AT4G08150 33.466 251 134 6 100 342 135 360 3.78e-30 119
MS.gene043768.t1 AT1G23380 34.909 275 136 10 96 361 82 322 3.86e-30 118
MS.gene043768.t1 AT1G70510 32.540 252 151 5 91 342 61 293 1.26e-29 116
MS.gene043768.t1 AT1G23380 34.657 277 136 11 96 361 82 324 3.00e-28 113
MS.gene043768.t1 AT1G62360 32.530 249 135 8 100 342 122 343 2.48e-23 100

Find 94 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTCTTGCGTTTGGTTT+TGG 0.207700 2.1:+40559628 None:intergenic
TGAAAGTGAAAGATCTTTAA+TGG 0.234617 2.1:-40562897 MS.gene043768:CDS
TTAATTGAAGTCCTGTTTCC+TGG 0.314760 2.1:+40559723 None:intergenic
AATTAAAGCAAATAAATAAC+TGG 0.337783 2.1:-40559706 MS.gene043768:CDS
TGATGATTCTGTGTTGCTTT+CGG 0.340218 2.1:+40565707 None:intergenic
GGTTCATTAATCAAAGAAAA+AGG 0.346232 2.1:-40559685 MS.gene043768:CDS
TCATGCCATGGAAGCTGTTA+TGG 0.355360 2.1:-40563198 MS.gene043768:CDS
CGCTGATCCGGCACCGGCTC+CGG 0.366320 2.1:+40565857 None:intergenic
TAAAACTCACCTCTTGCGTT+TGG 0.382625 2.1:+40559622 None:intergenic
GCTAGGTTGGTCCAGGAAAC+AGG 0.387799 2.1:-40559734 MS.gene043768:CDS
TTTCGGCCCGGTTCCGATCC+CGG 0.391273 2.1:+40565724 None:intergenic
GTGCCGGATCAGCGCCGAAT+TGG 0.392791 2.1:-40565848 MS.gene043768:CDS
TTCGGCCCGGTTCCGATCCC+GGG 0.394283 2.1:+40565725 None:intergenic
AACTGTTGCTCTTCATTGAA+TGG 0.395309 2.1:+40565918 None:intergenic
AGAAAACCCGGGATCGGAAC+CGG 0.397626 2.1:-40565731 MS.gene043768:CDS
TTATATGAAGGAAGCCTTGA+TGG 0.403625 2.1:-40562956 MS.gene043768:CDS
GGAAGCTGTTATGGCTTGTT+GGG 0.411048 2.1:-40563189 MS.gene043768:CDS
TGGAAGCTGTTATGGCTTGT+TGG 0.413199 2.1:-40563190 MS.gene043768:CDS
TTAAAACTTACAGTTGGATA+AGG 0.418650 2.1:+40561438 None:intergenic
GAGCCAATTCGGCGCTGATC+CGG 0.419648 2.1:+40565845 None:intergenic
AAAGGAGCTTGATCAATTCA+TGG 0.424580 2.1:-40565496 MS.gene043768:intron
GTTGAAGCACGAGCTTAAAC+AGG 0.438830 2.1:-40562858 MS.gene043768:intron
GGTGGCAATCACACTCGAAA+TGG 0.440017 2.1:-40561461 MS.gene043768:CDS
CCGGCACCGGCTCCGGTGAA+TGG 0.444652 2.1:+40565864 None:intergenic
ACAGCGTTGTTGAGCCAATT+CGG 0.449648 2.1:+40565834 None:intergenic
ATTGCCACCAAGCTTTCAAA+AGG 0.450033 2.1:+40561475 None:intergenic
CAATACAAAGCAGACATACT+TGG 0.452763 2.1:-40565672 MS.gene043768:CDS
AAGTACTCTTCACTTGCTAA+TGG 0.452773 2.1:-40565531 MS.gene043768:CDS
AAAAGGGAGGTTGTGTCACC+GGG 0.455869 2.1:+40561492 None:intergenic
TGTTATGGCTTGTTGGGAGC+TGG 0.458320 2.1:-40563183 MS.gene043768:CDS
CAAAAGGGAGGTTGTGTCAC+CGG 0.459004 2.1:+40561491 None:intergenic
GTTCTTTAAAAGCACAGAGC+AGG 0.490015 2.1:+40563243 None:intergenic
TTCACTTGCTAATGGTGTTG+TGG 0.493741 2.1:-40565523 MS.gene043768:CDS
TTTAATGGAACGTGTGAGGC+AGG 0.496599 2.1:-40562882 MS.gene043768:CDS
GTATCTCCTGGTGAAGGGAG+TGG 0.497119 2.1:-40563028 MS.gene043768:CDS
GGAAGAAGACAAAGCTAGGT+TGG 0.501618 2.1:-40559747 MS.gene043768:CDS
TTTAGGAAGAAGACAAAGCT+AGG 0.501787 2.1:-40559751 MS.gene043768:intron
ATTCGGCGCTGATCCGGCAC+CGG 0.502759 2.1:+40565851 None:intergenic
GAAAACCCGGGATCGGAACC+GGG 0.504035 2.1:-40565730 MS.gene043768:CDS
TCACAAAACGAGGACGTAAG+AGG 0.506259 2.1:-40565768 MS.gene043768:CDS
AGTTTGCATTGCTCTCTGCT+TGG 0.514653 2.1:+40562978 None:intergenic
ATTCTACGGAAGAGAAGAGC+AGG 0.516568 2.1:-40561522 MS.gene043768:CDS
CTATTCATTAGTAGTGGCGC+AGG 0.524383 2.1:-40559508 MS.gene043768:intron
CTACTACCATTCACCGGAGC+CGG 0.525885 2.1:-40565870 MS.gene043768:CDS
AGCAATGCAAACTTATATGA+AGG 0.526547 2.1:-40562968 MS.gene043768:CDS
GTGATGTATCTGGTTGTAAG+TGG 0.528480 2.1:+40565787 None:intergenic
AAAGATCTTTCACTTTCAGT+AGG 0.529421 2.1:+40562902 None:intergenic
GGTGGTGATAGTCTCAGCTT+TGG 0.534812 2.1:-40562935 MS.gene043768:CDS
ATCCGCGGAAGCTGATCGAC+GGG 0.535334 2.1:+40565591 None:intergenic
AGACAAAGCTAGGTTGGTCC+AGG 0.536981 2.1:-40559741 MS.gene043768:CDS
CCATTCACCGGAGCCGGTGC+CGG 0.539777 2.1:-40565864 MS.gene043768:CDS
CAGTCTCTACAAAGCTTGAC+CGG 0.543218 2.1:-40563158 MS.gene043768:intron
GTTGCTCCACTCCCTTCACC+AGG 0.545323 2.1:+40563022 None:intergenic
ACAAGCCATAACAGCTTCCA+TGG 0.548095 2.1:+40563193 None:intergenic
GATAGAAGCTGATCGTAAAG+AGG 0.552473 2.1:+40565645 None:intergenic
GATCCGCGGAAGCTGATCGA+CGG 0.553108 2.1:+40565590 None:intergenic
TGCCAAATCACACGAAACTC+TGG 0.558314 2.1:+40559473 None:intergenic
CGTAAGAGGTATGAACATGA+TGG 0.558929 2.1:-40565754 MS.gene043768:CDS
ATTCTGTGTTGCTTTCGGCC+CGG 0.559067 2.1:+40565712 None:intergenic
TCACTTTCAGTAGGAACAAG+AGG 0.559140 2.1:+40562911 None:intergenic
TGAAGCTGTGCGTCGATCCG+CGG 0.565484 2.1:+40565576 None:intergenic
CCACCAAGCTTTCAAAAGGG+AGG 0.569465 2.1:+40561479 None:intergenic
AGAAGAGCAGGAAAGCTCCC+CGG 0.570400 2.1:-40561510 MS.gene043768:CDS
TAATGGTGTTGTGGATGAAA+AGG 0.570805 2.1:-40565514 MS.gene043768:CDS
ACAGGTGTATCTCCTGGTGA+AGG 0.571753 2.1:-40563034 MS.gene043768:intron
CGCCCGTCGATCAGCTTCCG+CGG 0.571878 2.1:-40565593 MS.gene043768:CDS
ACTAATCCTTCGTCTTCCAC+TGG 0.572883 2.1:-40559653 MS.gene043768:CDS
TGAACATGATGGAGAAAACC+CGG 0.573901 2.1:-40565743 MS.gene043768:CDS
GCTTCAGCAGTCGCAGCGCG+TGG 0.581446 2.1:-40565559 MS.gene043768:CDS
AATTGATTTCATGAGAGAGA+TGG 0.582629 2.1:+40565946 None:intergenic
ACATGTCCGTGTTCATGCCA+TGG 0.585181 2.1:-40563210 MS.gene043768:CDS
TGATGGAGAAAACCCGGGAT+CGG 0.585256 2.1:-40565737 MS.gene043768:CDS
GGGTTACAAGAGTAAGATTG+TGG 0.594567 2.1:-40561559 MS.gene043768:CDS
GGAGGAAATTCTGCTGCCGT+AGG 0.594774 2.1:+40565808 None:intergenic
ACATAAGAGAAGAAATTCTA+CGG 0.596585 2.1:-40561536 MS.gene043768:CDS
TGAGACTATCACCACCATCA+AGG 0.601612 2.1:+40562942 None:intergenic
GCATGAACAGGTGTATCTCC+TGG 0.604904 2.1:-40563040 MS.gene043768:intron
CAGGTGTATCTCCTGGTGAA+GGG 0.604940 2.1:-40563033 MS.gene043768:CDS
TCAGCAGTCGCAGCGCGTGG+TGG 0.605137 2.1:-40565556 MS.gene043768:CDS
TTGCCACCAAGCTTTCAAAA+GGG 0.611238 2.1:+40561476 None:intergenic
CAAAGACTACTACCATTCAC+CGG 0.619446 2.1:-40565876 MS.gene043768:CDS
CAGCTTCCATGGCATGAACA+CGG 0.631221 2.1:+40563204 None:intergenic
ATAGAAGCTGATCGTAAAGA+GGG 0.632926 2.1:+40565646 None:intergenic
GATCTTTAATGGAACGTGTG+AGG 0.637290 2.1:-40562886 MS.gene043768:CDS
TTGGAGCCAGTGGAAGACGA+AGG 0.640820 2.1:+40559647 None:intergenic
GCTCCAAAACCAAACGCAAG+AGG 0.641070 2.1:-40559631 MS.gene043768:intron
AGGGAGTGGAGCAACAATGT+CGG 0.655814 2.1:-40563014 MS.gene043768:CDS
TCAACAACGCTGTAAACCTA+CGG 0.675133 2.1:-40565824 MS.gene043768:CDS
ATGTATCTGGTTGTAAGTGG+AGG 0.678620 2.1:+40565790 None:intergenic
ACCAGATACATCACAAAACG+AGG 0.688090 2.1:-40565778 MS.gene043768:CDS
AAGCAACACAGAATCATCAG+AGG 0.697069 2.1:-40565703 MS.gene043768:CDS
GAACATGATGGAGAAAACCC+GGG 0.707928 2.1:-40565742 MS.gene043768:CDS
TATGAAGGAAGCCTTGATGG+TGG 0.736950 2.1:-40562953 MS.gene043768:CDS
AAAGGGAGGTTGTGTCACCG+GGG 0.760034 2.1:+40561493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTAATAAAAAT+TGG - chr2.1:40564066-40564085 MS.gene043768:intron 0.0%
!! AAAATAAAAAAAAATAAATA+AGG + chr2.1:40560284-40560303 None:intergenic 0.0%
!! AAAATAAAATAAAAAATATT+TGG - chr2.1:40560871-40560890 MS.gene043768:intron 0.0%
!! ATTAAAAATTAATAAAAAAT+TGG - chr2.1:40562941-40562960 MS.gene043768:CDS 0.0%
!! AATCACATAATTATTTAAAA+TGG - chr2.1:40563817-40563836 MS.gene043768:intron 10.0%
!! GAAAAATAATTGAAAAAATA+CGG - chr2.1:40563082-40563101 MS.gene043768:intron 10.0%
!! GATATATAATTAAAAATAGA+TGG + chr2.1:40564783-40564802 None:intergenic 10.0%
!! TAAATAATAAAATTAGGTTT+GGG + chr2.1:40559986-40560005 None:intergenic 10.0%
!! TCTAAAAAAAATTAAAATTC+TGG + chr2.1:40563654-40563673 None:intergenic 10.0%
!! TGATGTTAAATAATAAAATT+AGG + chr2.1:40559992-40560011 None:intergenic 10.0%
!! TTAAATAATAAAATTAGGTT+TGG + chr2.1:40559987-40560006 None:intergenic 10.0%
!! TTAATGAAAAATAAAAATTC+TGG + chr2.1:40563610-40563629 None:intergenic 10.0%
!! TTTATTGTTGAAATATAAAT+TGG + chr2.1:40561808-40561827 None:intergenic 10.0%
!!! AAAAAAGTCTTTTTTTTTTA+GGG - chr2.1:40564499-40564518 MS.gene043768:intron 10.0%
!!! TATGAATTATTTAAAACTTT+GGG + chr2.1:40564446-40564465 None:intergenic 10.0%
!!! TATGGATTATTTTAAAAAAA+AGG - chr2.1:40564236-40564255 MS.gene043768:intron 10.0%
!!! TCAAAATATACTAATTTTTA+AGG + chr2.1:40564176-40564195 None:intergenic 10.0%
!!! TTATGAATTATTTAAAACTT+TGG + chr2.1:40564447-40564466 None:intergenic 10.0%
!!! TTTTTTTACCTTAAATATAA+GGG - chr2.1:40565154-40565173 MS.gene043768:intron 10.0%
!! AAAAGCTTAATCTTAAAATT+TGG + chr2.1:40561684-40561703 None:intergenic 15.0%
!! AAAATAAAACATCTCTAATA+TGG - chr2.1:40561838-40561857 MS.gene043768:intron 15.0%
!! AATTAAAGCAAATAAATAAC+TGG - chr2.1:40565737-40565756 MS.gene043768:CDS 15.0%
!! AGAAAAAAATTAAACATTAG+AGG + chr2.1:40561781-40561800 None:intergenic 15.0%
!! ATTGAAAAAATTGAAAATTC+TGG - chr2.1:40563241-40563260 MS.gene043768:CDS 15.0%
!! TAATCTAAATAGATCAATAA+TGG + chr2.1:40564297-40564316 None:intergenic 15.0%
!! TATTAAGTGAGTTTATAATT+GGG - chr2.1:40561607-40561626 MS.gene043768:intron 15.0%
!! TCAAAAATAGAAAGAAATAT+AGG - chr2.1:40564347-40564366 MS.gene043768:intron 15.0%
!! TCATAAAGTGATTTATAAAT+TGG - chr2.1:40565336-40565355 MS.gene043768:intron 15.0%
!! TTAAAAATTTCGAAAATATC+TGG - chr2.1:40563192-40563211 MS.gene043768:CDS 15.0%
!! TTAACATTCATATGTTATAT+TGG + chr2.1:40562033-40562052 None:intergenic 15.0%
!! TTTCAACAATAAATTGTTAA+TGG - chr2.1:40561815-40561834 MS.gene043768:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG + chr2.1:40562728-40562747 None:intergenic 15.0%
!!! AATAAAAAATATTTGGTGTT+CGG - chr2.1:40560878-40560897 MS.gene043768:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr2.1:40563393-40563412 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+TGG + chr2.1:40563393-40563412 None:intergenic 15.0%
!!! CAAAAAAGTCTTTTTTTTTT+AGG - chr2.1:40564498-40564517 MS.gene043768:intron 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG + chr2.1:40562729-40562748 None:intergenic 15.0%
!!! GTTTTTTTACCTTAAATATA+AGG - chr2.1:40565153-40565172 MS.gene043768:intron 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG - chr2.1:40562729-40562748 MS.gene043768:intron 15.0%
!!! TAAAATCACTCATAATTTTT+TGG + chr2.1:40565228-40565247 None:intergenic 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG + chr2.1:40562730-40562749 None:intergenic 15.0%
!!! TTAATGATATTTTGCATTAA+TGG - chr2.1:40561029-40561048 MS.gene043768:intron 15.0%
!!! TTTTTTACCTTAAATATAAG+GGG - chr2.1:40565155-40565174 MS.gene043768:intron 15.0%
!! AAATTAAATAATCTCGTTCA+AGG - chr2.1:40565009-40565028 MS.gene043768:intron 20.0%
!! ACAAAAAATTATGTGTATCT+CGG + chr2.1:40563342-40563361 None:intergenic 20.0%
!! ACGATTGTAATACAAATATA+AGG + chr2.1:40561895-40561914 None:intergenic 20.0%
!! ATATCTGGAAAATTTGAAAA+CGG - chr2.1:40563207-40563226 MS.gene043768:CDS 20.0%
!! ATCAAAATATATACATCATC+CGG - chr2.1:40561224-40561243 MS.gene043768:intron 20.0%
!! ATGAATAGAATAAATTTGCA+TGG + chr2.1:40560032-40560051 None:intergenic 20.0%
!! CAAACAAAAATTTATGACAT+AGG - chr2.1:40561101-40561120 MS.gene043768:intron 20.0%
!! CATTCAATTAATGTTGTATA+TGG + chr2.1:40561320-40561339 None:intergenic 20.0%
!! GTATTAAGTGAGTTTATAAT+TGG - chr2.1:40561606-40561625 MS.gene043768:intron 20.0%
!! TAGTTAATGTCACAATATAT+GGG + chr2.1:40560907-40560926 None:intergenic 20.0%
!! TGAAAAATTGAAAACAATTC+TGG - chr2.1:40562985-40563004 MS.gene043768:CDS 20.0%
!! TTAATCAAAGAAAAAGGAAT+TGG - chr2.1:40565764-40565783 MS.gene043768:CDS 20.0%
!! TTAGTTAATGTCACAATATA+TGG + chr2.1:40560908-40560927 None:intergenic 20.0%
!! TTCAAATGTAAATAAAAGAG+AGG + chr2.1:40561960-40561979 None:intergenic 20.0%
!!! AAAGAGTTATTTTTTTTAGG+GGG + chr2.1:40562727-40562746 None:intergenic 20.0%
!!! AAATAGATCAATAATGGATA+AGG + chr2.1:40564291-40564310 None:intergenic 20.0%
!!! AATAGATCAATAATGGATAA+GGG + chr2.1:40564290-40564309 None:intergenic 20.0%
!!! AATTTTCATTATGTGTATTC+CGG + chr2.1:40563368-40563387 None:intergenic 20.0%
!!! ACAAAATAAGACTTTTTTGT+TGG + chr2.1:40564527-40564546 None:intergenic 20.0%
!!! ACACATAATTTTTTGTAAAC+CGG - chr2.1:40563346-40563365 MS.gene043768:intron 20.0%
!!! ATATAGGAGTATTAATAAAC+TGG - chr2.1:40564363-40564382 MS.gene043768:intron 20.0%
!!! ATCAAAATTTTGTCTAGATT+TGG - chr2.1:40560246-40560265 MS.gene043768:intron 20.0%
!!! ATTGAAAATTCTGGAAAATA+CGG - chr2.1:40563250-40563269 MS.gene043768:CDS 20.0%
!!! ATTTTCATTCGTATTTTTTC+TGG - chr2.1:40563295-40563314 MS.gene043768:intron 20.0%
!!! ATTTTGCTTATAATAATGAC+CGG - chr2.1:40561355-40561374 MS.gene043768:intron 20.0%
!!! CTTACAAATTAGTTTTGTAT+GGG - chr2.1:40561642-40561661 MS.gene043768:intron 20.0%
!!! GGATTATTTTAAAAAAAAGG+TGG - chr2.1:40564239-40564258 MS.gene043768:intron 20.0%
!!! TAATGTTTTTTCAATATGCA+GGG - chr2.1:40563864-40563883 MS.gene043768:intron 20.0%
!!! TACCTTTATTTGAATTTTCT+AGG + chr2.1:40564990-40565009 None:intergenic 20.0%
!!! TCAAAATTTTGTCTAGATTT+GGG - chr2.1:40560247-40560266 MS.gene043768:intron 20.0%
!!! TCTTACAAATTAGTTTTGTA+TGG - chr2.1:40561641-40561660 MS.gene043768:intron 20.0%
!!! TGATTTTTTTTCCTCTAATA+AGG - chr2.1:40560472-40560491 MS.gene043768:intron 20.0%
!!! TTAATGTTTTTTCAATATGC+AGG - chr2.1:40563863-40563882 MS.gene043768:intron 20.0%
!!! TTGTGACATTAACTAATTTT+TGG - chr2.1:40560912-40560931 MS.gene043768:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr2.1:40563392-40563411 None:intergenic 20.0%
!!! TTTTCATTCGTATTTTTTCT+GGG - chr2.1:40563296-40563315 MS.gene043768:intron 20.0%
!!! TTTTTACTATTCATTAGTAG+TGG - chr2.1:40565929-40565948 MS.gene043768:CDS 20.0%
! AAAATTTGAAAACGGAATTC+TGG - chr2.1:40563215-40563234 MS.gene043768:CDS 25.0%
! AATGTTCGAAGAAAAAGTAA+AGG + chr2.1:40560574-40560593 None:intergenic 25.0%
! ACAAAATCCCCTTATATTTA+AGG + chr2.1:40565165-40565184 None:intergenic 25.0%
! ACATAAGAGAAGAAATTCTA+CGG - chr2.1:40563907-40563926 MS.gene043768:intron 25.0%
! ACATTCATATGTTATATTGG+AGG + chr2.1:40562030-40562049 None:intergenic 25.0%
! ATACAAATATAAGGAAATGC+AGG + chr2.1:40561886-40561905 None:intergenic 25.0%
! ATGATCACACTAAATATGAT+AGG + chr2.1:40564582-40564601 None:intergenic 25.0%
! ATGTTCGAAGAAAAAGTAAA+GGG + chr2.1:40560573-40560592 None:intergenic 25.0%
! CATCAAATTAAGATTCAAGT+CGG + chr2.1:40560663-40560682 None:intergenic 25.0%
! CATTCATATGTTATATTGGA+GGG + chr2.1:40562029-40562048 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG - chr2.1:40561281-40561300 MS.gene043768:intron 25.0%
! CATTGAAAATTAAGTAGTGA+AGG + chr2.1:40564938-40564957 None:intergenic 25.0%
! GACCTAGAAAATTCAAATAA+AGG - chr2.1:40564985-40565004 MS.gene043768:intron 25.0%
! GATAGTTGAAACTTAATTAC+CGG + chr2.1:40562307-40562326 None:intergenic 25.0%
! GGAAAAAATGCAAAAAGTTA+GGG - chr2.1:40565040-40565059 MS.gene043768:intron 25.0%
! GGTTCATTAATCAAAGAAAA+AGG - chr2.1:40565758-40565777 MS.gene043768:CDS 25.0%
! GTTATTGCACATAGTTAATT+AGG + chr2.1:40560156-40560175 None:intergenic 25.0%
! TACACATAATGAAAATTTCC+CGG - chr2.1:40563371-40563390 MS.gene043768:intron 25.0%
! TGAAAGTGAAAGATCTTTAA+TGG - chr2.1:40562546-40562565 MS.gene043768:intron 25.0%
! TGATCACACTAAATATGATA+GGG + chr2.1:40564581-40564600 None:intergenic 25.0%
! TGGAAAAAATGCAAAAAGTT+AGG - chr2.1:40565039-40565058 MS.gene043768:intron 25.0%
! TTAAAACTTACAGTTGGATA+AGG + chr2.1:40564008-40564027 None:intergenic 25.0%
! TTGATCTTAAAACTTACAGT+TGG + chr2.1:40564014-40564033 None:intergenic 25.0%
! TTGATTAAAGTAGTTGTAGT+GGG + chr2.1:40560064-40560083 None:intergenic 25.0%
! TTTAACATGATTAGCATTCA+TGG + chr2.1:40565658-40565677 None:intergenic 25.0%
!! AACCATGGTGTATATATTTT+AGG - chr2.1:40562653-40562672 MS.gene043768:intron 25.0%
!! ACTTTAAAAAACAGTAAACG+AGG - chr2.1:40560361-40560380 MS.gene043768:intron 25.0%
!! TAAGCAAAACTTTGCATTTT+AGG - chr2.1:40561256-40561275 MS.gene043768:intron 25.0%
!! TTTAGGCTTAATTACACTTT+TGG - chr2.1:40562670-40562689 MS.gene043768:intron 25.0%
!!! AAGACTTTTTTGTTGTTAGA+AGG + chr2.1:40564490-40564509 None:intergenic 25.0%
!!! AAGTGAACTATTTTTCTCAA+AGG - chr2.1:40564687-40564706 MS.gene043768:intron 25.0%
!!! AGTGAACTATTTTTCTCAAA+GGG - chr2.1:40564688-40564707 MS.gene043768:intron 25.0%
!!! ATTTTAACAAACTTCAAGGA+AGG + chr2.1:40564878-40564897 None:intergenic 25.0%
!!! GTTGATTTAACTTTTAGTGT+TGG - chr2.1:40562096-40562115 MS.gene043768:intron 25.0%
!!! TGACATTTTAACAAACTTCA+AGG + chr2.1:40564882-40564901 None:intergenic 25.0%
!!! TTTCTTTAAAATACCCTCAT+GGG + chr2.1:40564659-40564678 None:intergenic 25.0%
!!! TTTTCTTTAAAATACCCTCA+TGG + chr2.1:40564660-40564679 None:intergenic 25.0%
AAAGATCTTTCACTTTCAGT+AGG + chr2.1:40562544-40562563 None:intergenic 30.0%
AAAGTCTAATCAACAAACTC+CGG + chr2.1:40560346-40560365 None:intergenic 30.0%
AAATTTATGACATAGGACTG+TGG - chr2.1:40561108-40561127 MS.gene043768:intron 30.0%
AAGTTAACACCGTTTAAGTA+CGG + chr2.1:40565119-40565138 None:intergenic 30.0%
AATTACATTTACCTCCTTTG+AGG + chr2.1:40565202-40565221 None:intergenic 30.0%
AATTGATCCTTGCAACAAAT+GGG + chr2.1:40560626-40560645 None:intergenic 30.0%
AATTTATGACATAGGACTGT+GGG - chr2.1:40561109-40561128 MS.gene043768:intron 30.0%
ACAAGAAAAAAGAGTCCATT+AGG + chr2.1:40565851-40565870 None:intergenic 30.0%
AGATGAATTCTTAGTTAGCT+AGG + chr2.1:40565598-40565617 None:intergenic 30.0%
AGCAATGCAAACTTATATGA+AGG - chr2.1:40562475-40562494 MS.gene043768:intron 30.0%
AGCCTAAAATATATACACCA+TGG + chr2.1:40562658-40562677 None:intergenic 30.0%
ATACGATATGACAATTGTCA+CGG + chr2.1:40564040-40564059 None:intergenic 30.0%
ATATACCCGCAAATTATTGA+TGG - chr2.1:40560743-40560762 MS.gene043768:intron 30.0%
ATTTACTCCATAGTTGTCAT+AGG + chr2.1:40564099-40564118 None:intergenic 30.0%
CAACAACATGAAAGAATCAT+AGG + chr2.1:40561463-40561482 None:intergenic 30.0%
CAACTACCATCAATAATTTG+CGG + chr2.1:40560752-40560771 None:intergenic 30.0%
CAAGAAAAAAGAGTCCATTA+GGG + chr2.1:40565850-40565869 None:intergenic 30.0%
CTTCTTGATCATTACTAGTA+CGG + chr2.1:40565521-40565540 None:intergenic 30.0%
GTAGATACGTAATAGATTGA+CGG + chr2.1:40561439-40561458 None:intergenic 30.0%
GTTGATTAAAGTAGTTGTAG+TGG + chr2.1:40560065-40560084 None:intergenic 30.0%
GTTGTTTAGTTAAACCTCAA+AGG - chr2.1:40565185-40565204 MS.gene043768:intron 30.0%
TATTCGAGAGAAAATTACGA+GGG + chr2.1:40565441-40565460 None:intergenic 30.0%
TGATTAAAGTAGTTGTAGTG+GGG + chr2.1:40560063-40560082 None:intergenic 30.0%
TTAGTATATATGTCGAGCTT+AGG + chr2.1:40563473-40563492 None:intergenic 30.0%
TTATTCGAGAGAAAATTACG+AGG + chr2.1:40565442-40565461 None:intergenic 30.0%
TTTGATCTTTCCTGAATTTC+CGG - chr2.1:40560324-40560343 MS.gene043768:intron 30.0%
! AAACTCGTGAATGTACTTTT+AGG - chr2.1:40565675-40565694 MS.gene043768:CDS 30.0%
! AACTACCATCAATAATTTGC+GGG + chr2.1:40560751-40560770 None:intergenic 30.0%
! AATTGATTTCATGAGAGAGA+TGG + chr2.1:40559500-40559519 None:intergenic 30.0%
! ATTGACGGATGGAAAATATA+TGG + chr2.1:40561424-40561443 None:intergenic 30.0%
! CATCTAAGATGAAGATCTAA+AGG + chr2.1:40560943-40560962 None:intergenic 30.0%
! CGACTTGAATCTTAATTTGA+TGG - chr2.1:40560661-40560680 MS.gene043768:intron 30.0%
! CTTTTGTTGAATGAAATCCT+AGG - chr2.1:40564725-40564744 MS.gene043768:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG + chr2.1:40561246-40561265 None:intergenic 30.0%
! TGGCTTTTTATCTTTGCAAA+TGG + chr2.1:40562371-40562390 None:intergenic 30.0%
! TTTTTCTCCTATGACAACTA+TGG - chr2.1:40564089-40564108 MS.gene043768:intron 30.0%
!! TAATTAGTTTGTCCTGACTT+AGG - chr2.1:40560526-40560545 MS.gene043768:intron 30.0%
!! TCAATAATGGATAAGGGTAT+TGG + chr2.1:40564284-40564303 None:intergenic 30.0%
!! TTCACTTTTGGTTGCAATTT+TGG - chr2.1:40562761-40562780 MS.gene043768:intron 30.0%
!! TTCATTTTCAACGTTGATTG+AGG - chr2.1:40560801-40560820 MS.gene043768:intron 30.0%
!!! TTTTGATAGTGTGAATCAGA+AGG + chr2.1:40561506-40561525 None:intergenic 30.0%
AAAAAACAGTAAACGAGGAG+AGG - chr2.1:40560366-40560385 MS.gene043768:intron 35.0%
AAACCAGTAACGTATACGAA+GGG + chr2.1:40560718-40560737 None:intergenic 35.0%
AAAGGAGCTTGATCAATTCA+TGG - chr2.1:40559947-40559966 MS.gene043768:intron 35.0%
AACTGTTGCTCTTCATTGAA+TGG + chr2.1:40559528-40559547 None:intergenic 35.0%
AATGCAGGAAACTTGAATGT+AGG + chr2.1:40561871-40561890 None:intergenic 35.0%
AGTTAGCTAGGCACATTAAT+TGG + chr2.1:40565586-40565605 None:intergenic 35.0%
AGTTTCGACATATACTTCCT+AGG + chr2.1:40564745-40564764 None:intergenic 35.0%
ATACGTAATAGATTGACGGA+TGG + chr2.1:40561435-40561454 None:intergenic 35.0%
ATAGAAGCTGATCGTAAAGA+GGG + chr2.1:40559800-40559819 None:intergenic 35.0%
ATGATTAGCATTCATGGAAG+AGG + chr2.1:40565652-40565671 None:intergenic 35.0%
ATGCAGGAAACTTGAATGTA+GGG + chr2.1:40561870-40561889 None:intergenic 35.0%
ATGCTTATGACTTGACACAT+TGG + chr2.1:40565476-40565495 None:intergenic 35.0%
ATTGATCCTTGCAACAAATG+GGG + chr2.1:40560625-40560644 None:intergenic 35.0%
ATTTATGACATAGGACTGTG+GGG - chr2.1:40561110-40561129 MS.gene043768:intron 35.0%
CAACCAAAAGTGAACTTAAG+GGG + chr2.1:40562755-40562774 None:intergenic 35.0%
CAATACAAAGCAGACATACT+TGG - chr2.1:40559771-40559790 MS.gene043768:intron 35.0%
CAATTGATCCTTGCAACAAA+TGG + chr2.1:40560627-40560646 None:intergenic 35.0%
CACAACTCTCAAAACTTAAG+AGG - chr2.1:40565063-40565082 MS.gene043768:intron 35.0%
CACTAAAATTCAGTATCACG+AGG + chr2.1:40561155-40561174 None:intergenic 35.0%
CGTTATTAATTCACCAGTCA+TGG + chr2.1:40565548-40565567 None:intergenic 35.0%
GATAACGTTATTACACCTTC+CGG + chr2.1:40561377-40561396 None:intergenic 35.0%
GCAACCAAAAGTGAACTTAA+GGG + chr2.1:40562756-40562775 None:intergenic 35.0%
GTGTCCCATTAGAAAATAGA+GGG + chr2.1:40564912-40564931 None:intergenic 35.0%
GTTTAGTTAAACCTCAAAGG+AGG - chr2.1:40565188-40565207 MS.gene043768:intron 35.0%
TGAACTGAATGTAGAACCTA+CGG - chr2.1:40561976-40561995 MS.gene043768:intron 35.0%
TGCAACCAAAAGTGAACTTA+AGG + chr2.1:40562757-40562776 None:intergenic 35.0%
TGCTTATAATAATGACCGGA+AGG - chr2.1:40561359-40561378 MS.gene043768:intron 35.0%
TGCTTATGACTTGACACATT+GGG + chr2.1:40565475-40565494 None:intergenic 35.0%
TGTCCCATTAGAAAATAGAG+GGG + chr2.1:40564911-40564930 None:intergenic 35.0%
TGTGTCCCATTAGAAAATAG+AGG + chr2.1:40564913-40564932 None:intergenic 35.0%
TTAATTGAAGTCCTGTTTCC+TGG + chr2.1:40565723-40565742 None:intergenic 35.0%
TTATATGAAGGAAGCCTTGA+TGG - chr2.1:40562487-40562506 MS.gene043768:intron 35.0%
TTATCTTTGCAAATGGTACG+TGG + chr2.1:40562364-40562383 None:intergenic 35.0%
TTCATGTTGTTGCTGTAAGT+GGG - chr2.1:40561471-40561490 MS.gene043768:CDS 35.0%
TTTAGGAAGAAGACAAAGCT+AGG - chr2.1:40565692-40565711 MS.gene043768:CDS 35.0%
TTTCATGTTGTTGCTGTAAG+TGG - chr2.1:40561470-40561489 MS.gene043768:CDS 35.0%
TTTCTTGATACGCATGAAAG+TGG + chr2.1:40564812-40564831 None:intergenic 35.0%
! AAGTACTCTTCACTTGCTAA+TGG - chr2.1:40559912-40559931 MS.gene043768:intron 35.0%
! ACACCCCTCTATTTTCTAAT+GGG - chr2.1:40564905-40564924 MS.gene043768:intron 35.0%
! ACTTAAACGGTGTTAACTTG+AGG - chr2.1:40565120-40565139 MS.gene043768:intron 35.0%
! ATCGCAACTTTTGGATACTT+AGG + chr2.1:40562699-40562718 None:intergenic 35.0%
! CGCAAATTATTGATGGTAGT+TGG - chr2.1:40560750-40560769 MS.gene043768:intron 35.0%
! CTTAAACGGTGTTAACTTGA+GGG - chr2.1:40565121-40565140 MS.gene043768:intron 35.0%
! GACTCTCTTTTCCTTATTAG+AGG + chr2.1:40560486-40560505 None:intergenic 35.0%
! TCGCAACTTTTGGATACTTA+GGG + chr2.1:40562698-40562717 None:intergenic 35.0%
! TTAAACGGTGTTAACTTGAG+GGG - chr2.1:40565122-40565141 MS.gene043768:intron 35.0%
! TTTATTCCCCATTTGTTGCA+AGG - chr2.1:40560616-40560635 MS.gene043768:intron 35.0%
!! ATAATGGATAAGGGTATTGG+AGG + chr2.1:40564281-40564300 None:intergenic 35.0%
!! TAATGGTGTTGTGGATGAAA+AGG - chr2.1:40559929-40559948 MS.gene043768:intron 35.0%
!! TATTTTTCTCAAAGGGTGTG+AGG - chr2.1:40564695-40564714 MS.gene043768:intron 35.0%
!! TGATGATTCTGTGTTGCTTT+CGG + chr2.1:40559739-40559758 None:intergenic 35.0%
!!! ATCTCGTTCAAGGAGTTTTT+TGG - chr2.1:40565019-40565038 MS.gene043768:intron 35.0%
!!! GGTGAGTTTTATTTCCCTAA+TGG - chr2.1:40565833-40565852 MS.gene043768:CDS 35.0%
AACCAGTAACGTATACGAAG+GGG + chr2.1:40560717-40560736 None:intergenic 40.0%
AAGCAACACAGAATCATCAG+AGG - chr2.1:40559740-40559759 MS.gene043768:CDS 40.0%
AATAATGCCCAGCAACATCA+AGG + chr2.1:40565627-40565646 None:intergenic 40.0%
AATGCAATGCAATGCAACCA+TGG - chr2.1:40562638-40562657 MS.gene043768:intron 40.0%
AATGGAACAAGTTCCCATGA+GGG - chr2.1:40564643-40564662 MS.gene043768:intron 40.0%
ACCAGATACATCACAAAACG+AGG - chr2.1:40559665-40559684 MS.gene043768:CDS 40.0%
ACTGTGGGGTAATACTTCAA+GGG - chr2.1:40561124-40561143 MS.gene043768:intron 40.0%
AGAACCTACGGTTGAAATCA+AGG - chr2.1:40561988-40562007 MS.gene043768:intron 40.0%
AGTAAACGAGGAGAGGATAA+TGG - chr2.1:40560373-40560392 MS.gene043768:intron 40.0%
ATCAAGAAGACAACCATGAC+TGG - chr2.1:40565532-40565551 MS.gene043768:CDS 40.0%
ATGTATCTGGTTGTAAGTGG+AGG + chr2.1:40559656-40559675 None:intergenic 40.0%
ATTGCCACCAAGCTTTCAAA+AGG + chr2.1:40563971-40563990 None:intergenic 40.0%
CAAACCAGTAACGTATACGA+AGG + chr2.1:40560719-40560738 None:intergenic 40.0%
CAAAGACTACTACCATTCAC+CGG - chr2.1:40559567-40559586 MS.gene043768:intron 40.0%
GAACCTACGGTTGAAATCAA+GGG - chr2.1:40561989-40562008 MS.gene043768:intron 40.0%
GATAGAAGCTGATCGTAAAG+AGG + chr2.1:40559801-40559820 None:intergenic 40.0%
GATCTTTAATGGAACGTGTG+AGG - chr2.1:40562557-40562576 MS.gene043768:intron 40.0%
GGGTTACAAGAGTAAGATTG+TGG - chr2.1:40563884-40563903 MS.gene043768:intron 40.0%
GTATCCAAAAGTTGCGATTC+AGG - chr2.1:40562701-40562720 MS.gene043768:intron 40.0%
GTGATGTATCTGGTTGTAAG+TGG + chr2.1:40559659-40559678 None:intergenic 40.0%
GTTCATGCATGCATCATGTA+TGG + chr2.1:40562391-40562410 None:intergenic 40.0%
TAAAACTCACCTCTTGCGTT+TGG + chr2.1:40565824-40565843 None:intergenic 40.0%
TAATGGAACAAGTTCCCATG+AGG - chr2.1:40564642-40564661 MS.gene043768:intron 40.0%
TACATGATGCATGCATGAAC+AGG - chr2.1:40562391-40562410 MS.gene043768:intron 40.0%
TACGGTTGAAATCAAGGGTA+GGG - chr2.1:40561994-40562013 MS.gene043768:intron 40.0%
TCAACAAACTCCGGAAATTC+AGG + chr2.1:40560337-40560356 None:intergenic 40.0%
TCAACAACGCTGTAAACCTA+CGG - chr2.1:40559619-40559638 MS.gene043768:intron 40.0%
TCACTTTCAGTAGGAACAAG+AGG + chr2.1:40562535-40562554 None:intergenic 40.0%
TCTCACTGACCGTACTTAAA+CGG - chr2.1:40565107-40565126 MS.gene043768:intron 40.0%
TTGCCACCAAGCTTTCAAAA+GGG + chr2.1:40563970-40563989 None:intergenic 40.0%
! CACACCCCTCTATTTTCTAA+TGG - chr2.1:40564904-40564923 MS.gene043768:intron 40.0%
! CGCAACTTTTGGATACTTAG+GGG + chr2.1:40562697-40562716 None:intergenic 40.0%
! CGTAAGAGGTATGAACATGA+TGG - chr2.1:40559689-40559708 MS.gene043768:CDS 40.0%
! GCAACTTTTGGATACTTAGG+GGG + chr2.1:40562696-40562715 None:intergenic 40.0%
! GTTCTTTAAAAGCACAGAGC+AGG + chr2.1:40562203-40562222 None:intergenic 40.0%
! TCCTCGTTTTGTGATGTATC+TGG + chr2.1:40559669-40559688 None:intergenic 40.0%
! TGAACATGATGGAGAAAACC+CGG - chr2.1:40559700-40559719 MS.gene043768:CDS 40.0%
! TTAATGGACACGTCATCATC+TGG - chr2.1:40561045-40561064 MS.gene043768:intron 40.0%
! TTCACTTGCTAATGGTGTTG+TGG - chr2.1:40559920-40559939 MS.gene043768:intron 40.0%
ACAAGCCATAACAGCTTCCA+TGG + chr2.1:40562253-40562272 None:intergenic 45.0%
ACAGCGTTGTTGAGCCAATT+CGG + chr2.1:40559612-40559631 None:intergenic 45.0%
ACTAATCCTTCGTCTTCCAC+TGG - chr2.1:40565790-40565809 MS.gene043768:CDS 45.0%
ACTGGGTCAAAATTGGGCTA+GGG + chr2.1:40562789-40562808 None:intergenic 45.0%
AGTTTGCATTGCTCTCTGCT+TGG + chr2.1:40562468-40562487 None:intergenic 45.0%
ATTCTACGGAAGAGAAGAGC+AGG - chr2.1:40563921-40563940 MS.gene043768:intron 45.0%
CAGTCTCTACAAAGCTTGAC+CGG - chr2.1:40562285-40562304 MS.gene043768:intron 45.0%
CTACCCTTGATTTCAACCGT+AGG + chr2.1:40561995-40562014 None:intergenic 45.0%
CTACGGTTGAAATCAAGGGT+AGG - chr2.1:40561993-40562012 MS.gene043768:intron 45.0%
CTATTCATTAGTAGTGGCGC+AGG - chr2.1:40565935-40565954 MS.gene043768:CDS 45.0%
GACTGTGGGGTAATACTTCA+AGG - chr2.1:40561123-40561142 MS.gene043768:intron 45.0%
GCAAATGGTACGTGGATGAT+TGG + chr2.1:40562356-40562375 None:intergenic 45.0%
GGAAGAAGACAAAGCTAGGT+TGG - chr2.1:40565696-40565715 MS.gene043768:CDS 45.0%
GTAACGTATACGAAGGGGAA+AGG + chr2.1:40560712-40560731 None:intergenic 45.0%
GTTGAAGCACGAGCTTAAAC+AGG - chr2.1:40562585-40562604 MS.gene043768:intron 45.0%
TACGCAACCTTGATGTTGCT+GGG - chr2.1:40565617-40565636 MS.gene043768:CDS 45.0%
TATGAAGGAAGCCTTGATGG+TGG - chr2.1:40562490-40562509 MS.gene043768:intron 45.0%
TCACAAAACGAGGACGTAAG+AGG - chr2.1:40559675-40559694 MS.gene043768:CDS 45.0%
TCATGCCATGGAAGCTGTTA+TGG - chr2.1:40562245-40562264 MS.gene043768:intron 45.0%
TGAGACTATCACCACCATCA+AGG + chr2.1:40562504-40562523 None:intergenic 45.0%
TTCCCCTTCGTATACGTTAC+TGG - chr2.1:40560712-40560731 MS.gene043768:intron 45.0%
TTTAATGGAACGTGTGAGGC+AGG - chr2.1:40562561-40562580 MS.gene043768:intron 45.0%
! AGGCCCCTTAAGTTCACTTT+TGG - chr2.1:40562749-40562768 MS.gene043768:intron 45.0%
! GAACATGATGGAGAAAACCC+GGG - chr2.1:40559701-40559720 MS.gene043768:CDS 45.0%
! TGGAAGCTGTTATGGCTTGT+TGG - chr2.1:40562253-40562272 MS.gene043768:intron 45.0%
!! AGCGTTGACTGGGTCAAAAT+TGG + chr2.1:40562796-40562815 None:intergenic 45.0%
!! CAACCTCCCTTTTGAAAGCT+TGG - chr2.1:40563961-40563980 MS.gene043768:intron 45.0%
!! GCGTTGACTGGGTCAAAATT+GGG + chr2.1:40562795-40562814 None:intergenic 45.0%
!! GGAAGCTGTTATGGCTTGTT+GGG - chr2.1:40562254-40562273 MS.gene043768:intron 45.0%
!! TCACCTCTTGCGTTTGGTTT+TGG + chr2.1:40565818-40565837 None:intergenic 45.0%
!! AAAAAAATATTAAAAAATTC+TGG - chr2.1:40562965-40562984 MS.gene043768:CDS 5.0%
!! AAAAAAATTTAAAAAAATTC+TGG + chr2.1:40563756-40563775 None:intergenic 5.0%
!! ATATATAATTAAAAATAGAT+GGG + chr2.1:40564782-40564801 None:intergenic 5.0%
!! TAAAAAATAAATAAAAATTC+TGG - chr2.1:40562866-40562885 MS.gene043768:CDS 5.0%
!! TTATTTAGTTATTAATATTA+TGG - chr2.1:40564218-40564237 MS.gene043768:intron 5.0%
!!! AATAATACTTTTAATATTAA+TGG - chr2.1:40564625-40564644 MS.gene043768:intron 5.0%
!!! TTTTATTTTTAAAAAAATGT+TGG - chr2.1:40560416-40560435 MS.gene043768:intron 5.0%
AAAAGGGAGGTTGTGTCACC+GGG + chr2.1:40563954-40563973 None:intergenic 50.0%
ACAGGTGTATCTCCTGGTGA+AGG - chr2.1:40562409-40562428 MS.gene043768:intron 50.0%
ACATGTCCGTGTTCATGCCA+TGG - chr2.1:40562233-40562252 MS.gene043768:intron 50.0%
AGGGAGTGGAGCAACAATGT+CGG - chr2.1:40562429-40562448 MS.gene043768:intron 50.0%
CAAAAGGGAGGTTGTGTCAC+CGG + chr2.1:40563955-40563974 None:intergenic 50.0%
CAACTGCAGCATCCTAAGTC+AGG + chr2.1:40560541-40560560 None:intergenic 50.0%
CAGCTTCCATGGCATGAACA+CGG + chr2.1:40562242-40562261 None:intergenic 50.0%
CAGGTGTATCTCCTGGTGAA+GGG - chr2.1:40562410-40562429 MS.gene043768:intron 50.0%
CCACCAAGCTTTCAAAAGGG+AGG + chr2.1:40563967-40563986 None:intergenic 50.0%
CTACGCAACCTTGATGTTGC+TGG - chr2.1:40565616-40565635 MS.gene043768:CDS 50.0%
CTTAGGATGCTGCAGTTGTG+AGG - chr2.1:40560543-40560562 MS.gene043768:intron 50.0%
GACTGGGTCAAAATTGGGCT+AGG + chr2.1:40562790-40562809 None:intergenic 50.0%
GCATGAACAGGTGTATCTCC+TGG - chr2.1:40562403-40562422 MS.gene043768:intron 50.0%
GCTCCAAAACCAAACGCAAG+AGG - chr2.1:40565812-40565831 MS.gene043768:CDS 50.0%
GGTGGCAATCACACTCGAAA+TGG - chr2.1:40563982-40564001 MS.gene043768:intron 50.0%
GGTGGTGATAGTCTCAGCTT+TGG - chr2.1:40562508-40562527 MS.gene043768:intron 50.0%
TGATGGAGAAAACCCGGGAT+CGG - chr2.1:40559706-40559725 MS.gene043768:CDS 50.0%
! CTGGGTCAAAATTGGGCTAG+GGG + chr2.1:40562788-40562807 None:intergenic 50.0%
! TGGGTCAAAATTGGGCTAGG+GGG + chr2.1:40562787-40562806 None:intergenic 50.0%
!! AGACAAAGCTAGGTTGGTCC+AGG - chr2.1:40565702-40565721 MS.gene043768:CDS 50.0%
!! ATTCTGTGTTGCTTTCGGCC+CGG + chr2.1:40559734-40559753 None:intergenic 50.0%
!! CCTCCCTTTTGAAAGCTTGG+TGG - chr2.1:40563964-40563983 MS.gene043768:intron 50.0%
!! TGTTATGGCTTGTTGGGAGC+TGG - chr2.1:40562260-40562279 MS.gene043768:intron 50.0%
AAAGGGAGGTTGTGTCACCG+GGG + chr2.1:40563953-40563972 None:intergenic 55.0%
AGAAAACCCGGGATCGGAAC+CGG - chr2.1:40559712-40559731 MS.gene043768:CDS 55.0%
AGAAGAGCAGGAAAGCTCCC+CGG - chr2.1:40563933-40563952 MS.gene043768:intron 55.0%
CTACTACCATTCACCGGAGC+CGG - chr2.1:40559573-40559592 MS.gene043768:intron 55.0%
GGAGGAAATTCTGCTGCCGT+AGG + chr2.1:40559638-40559657 None:intergenic 55.0%
GTATCTCCTGGTGAAGGGAG+TGG - chr2.1:40562415-40562434 MS.gene043768:intron 55.0%
TTGGAGCCAGTGGAAGACGA+AGG + chr2.1:40565799-40565818 None:intergenic 55.0%
! GGGGCCTGAATCGCAACTTT+TGG + chr2.1:40562708-40562727 None:intergenic 55.0%
!! GCTAGGTTGGTCCAGGAAAC+AGG - chr2.1:40565709-40565728 MS.gene043768:CDS 55.0%
!!! GCGTTTGGTTTTGGAGCCAG+TGG + chr2.1:40565809-40565828 None:intergenic 55.0%
ATCCGCGGAAGCTGATCGAC+GGG + chr2.1:40559855-40559874 None:intergenic 60.0%
GAAAACCCGGGATCGGAACC+GGG - chr2.1:40559713-40559732 MS.gene043768:CDS 60.0%
GATCCGCGGAAGCTGATCGA+CGG + chr2.1:40559856-40559875 None:intergenic 60.0%
GTTGCTCCACTCCCTTCACC+AGG + chr2.1:40562424-40562443 None:intergenic 60.0%
TGACCCAGTCAACGCTGACG+TGG - chr2.1:40562800-40562819 MS.gene043768:intron 60.0%
! TGAAGCTGTGCGTCGATCCG+CGG + chr2.1:40559870-40559889 None:intergenic 60.0%
!! CGTCCACGTCAGCGTTGACT+GGG + chr2.1:40562806-40562825 None:intergenic 60.0%
!! GAGCCAATTCGGCGCTGATC+CGG + chr2.1:40559601-40559620 None:intergenic 60.0%
TTTCGGCCCGGTTCCGATCC+CGG + chr2.1:40559722-40559741 None:intergenic 65.0%
! GTGCCGGATCAGCGCCGAAT+TGG - chr2.1:40559595-40559614 MS.gene043768:intron 65.0%
!! ATTCGGCGCTGATCCGGCAC+CGG + chr2.1:40559595-40559614 None:intergenic 65.0%
!! GCGTCCACGTCAGCGTTGAC+TGG + chr2.1:40562807-40562826 None:intergenic 65.0%
CCATTCACCGGAGCCGGTGC+CGG - chr2.1:40559579-40559598 MS.gene043768:intron 70.0%
CGCCCGTCGATCAGCTTCCG+CGG - chr2.1:40559850-40559869 MS.gene043768:intron 70.0%
GCTTCAGCAGTCGCAGCGCG+TGG - chr2.1:40559884-40559903 MS.gene043768:intron 70.0%
TCAGCAGTCGCAGCGCGTGG+TGG - chr2.1:40559887-40559906 MS.gene043768:intron 70.0%
TTCGGCCCGGTTCCGATCCC+GGG + chr2.1:40559721-40559740 None:intergenic 70.0%
!! CCGGCACCGGCTCCGGTGAA+TGG + chr2.1:40559582-40559601 None:intergenic 75.0%
!! CGCTGATCCGGCACCGGCTC+CGG + chr2.1:40559589-40559608 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 40559480 40565985 40559480 ID=MS.gene043768
chr2.1 mRNA 40559480 40565985 40559480 ID=MS.gene043768.t1;Parent=MS.gene043768
chr2.1 exon 40565497 40565985 40565497 ID=MS.gene043768.t1.exon1;Parent=MS.gene043768.t1
chr2.1 CDS 40565497 40565985 40565497 ID=cds.MS.gene043768.t1;Parent=MS.gene043768.t1
chr2.1 exon 40563159 40563279 40563159 ID=MS.gene043768.t1.exon2;Parent=MS.gene043768.t1
chr2.1 CDS 40563159 40563279 40563159 ID=cds.MS.gene043768.t1;Parent=MS.gene043768.t1
chr2.1 exon 40562859 40563052 40562859 ID=MS.gene043768.t1.exon3;Parent=MS.gene043768.t1
chr2.1 CDS 40562859 40563052 40562859 ID=cds.MS.gene043768.t1;Parent=MS.gene043768.t1
chr2.1 exon 40561449 40561580 40561449 ID=MS.gene043768.t1.exon4;Parent=MS.gene043768.t1
chr2.1 CDS 40561449 40561580 40561449 ID=cds.MS.gene043768.t1;Parent=MS.gene043768.t1
chr2.1 exon 40559632 40559768 40559632 ID=MS.gene043768.t1.exon5;Parent=MS.gene043768.t1
chr2.1 CDS 40559632 40559768 40559632 ID=cds.MS.gene043768.t1;Parent=MS.gene043768.t1
chr2.1 exon 40559480 40559519 40559480 ID=MS.gene043768.t1.exon6;Parent=MS.gene043768.t1
chr2.1 CDS 40559480 40559519 40559480 ID=cds.MS.gene043768.t1;Parent=MS.gene043768.t1
Gene Sequence

>MS.gene043768

ATGGCTTTTCATCATGACCATCTCTCTCATGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAATCAAAGCAGAGATATGCAAAGACTACTACCATTCACCGGAGCCGGTGCCGGATCAGCGCCGAATTGGCTCAACAACGCTGTAAACCTACGGCAGCAGAATTTCCTCCACTTACAACCAGATACATCACAAAACGAGGACGTAAGAGGTATGAACATGATGGAGAAAACCCGGGATCGGAACCGGGCCGAAAGCAACACAGAATCATCAGAGGAGTTATCACAATACAAAGCAGACATACTTGGACACCCTCTTTACGATCAGCTTCTATCTGCTCATGTTTCGTGTCTGCGAATTGCTACGCCCGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAAAAGGAGCTTGATCAATTCATGGTTAGTTACAACAACCCAAACCTAATTTTATTATTTAACATCAATTATATATCTTCTTATCCATGCAAATTTATTCTATTCATCTCTATTACCCCACTACAACTACTTTAATCAACTTTTCAATGATAGATTTGTATGATTTTATTTATGTCTCTATTTCTTTGTTGCTGTTGTCGCTTTTTAACCTAATTAACTATGTGCAATAACAATACTGCAATAGTAGTAAGCTTCTTTACTATTCTAATAATTAAGCTTCTTTGTGATTTTAATATTTTTAATCAAAATTTTGTCTAGATTTGGGTGCTTTTGTTTCCTTATTTATTTTTTTTTATTTTACTCTTATTTTGTGAAACTCTTTGATCTTTCCTGAATTTCCGGAGTTTGTTGATTAGACTTTAAAAAACAGTAAACGAGGAGAGGATAATGGAAAAAGTAACATTCTTTTTATTTTATTTTTAAAAAAATGTTGGACTGTAGTAGTACGAATTGTGAGTAAATGAATCTGATTTTTTTTCCTCTAATAAGGAAAAGAGAGTCATTAATAGAGTAAATGAGTGTAATTAGTTTGTCCTGACTTAGGATGCTGCAGTTGTGAGGTTTTCCCTTTACTTTTTCTTCGAACATTTTGATTAAAGTTGTGAAAAATATTTATTCCCCATTTGTTGCAAGGATCAATTGTTTACTCTTTTTGCCGACTTGAATCTTAATTTGATGGTTTATAAGTTCTTTAATTTTATCAACCTTTCCCCTTCGTATACGTTACTGGTTTGATTAATATACCCGCAAATTATTGATGGTAGTTGGTAAATTTAATTGTTTATACATTAATTGATTCATTTTCAACGTTGATTGAGGACTTTGTTAAATAAGAAACAGAAAATAATCTAGTCACTAAAAATATAAAAATAAAATAAAAAATATTTGGTGTTCGGTAACCCATATATTGTGACATTAACTAATTTTTGGTTCAACCTTTAGATCTTCATCTTAGATGAATAAAACTGTGTCTGTGACTGTGACTTTGACTTGCTTGCGAGTAAATTGTTTTCATTTTGATTTCTTAATGATATTTTGCATTAATGGACACGTCATCATCTGGCTTATTATTGATTCTGTTAATTTTTTTTACAAACAAACAAAAATTTATGACATAGGACTGTGGGGTAATACTTCAAGGGTTGCACCTCGTGATACTGAATTTTAGTGATATTGATGATATTGTGTTTATCTCTCTCAGTTATAATCATTCTCTTTCATCAAAATATATACATCATCCGGTCACTATTATAAGCAAAACTTTGCATTTTAGGTTCATTCATTAAATGATGTATGTGGTCTATAATAAAGACCATATACAACATTAATTGAATGAATCTAAAATGCAAAATTTTGCTTATAATAATGACCGGAAGGTGTAATAACGTTATCAATGTCATAAAAACTCAATGTCATCCATATATTTTCCATCCGTCAATCTATTACGTATCTACTCCTATGATTCTTTCATGTTGTTGCTGTAAGTGGGTAATTTCGTCCTTCTGATTCACACTATCAAAATCTAATCATATATTTTTATTCATTGAATCGTTATATGATAATAATTTGATCAATTATTTTACAAGTGTAGAGAGTCTCACGTATTAAGTGAGTTTATAATTGGGATATCATCTCATCTTACAAATTAGTTTTGTATGGGTTGACTCAAAATCAATCCAAATTTTAAGATTAAGCTTTTACATAACTAAAGAAAATCAACAATTTTTCAACTTGTCAAAATTATTAGATTTTTTTTAACACAAAATTATTAAACCTCTAATGTTTAATTTTTTTCTTGCACCAATTTATATTTCAACAATAAATTGTTAATGGAAAATAAAACATCTCTAATATGGAATAGACCCTACATTCAAGTTTCCTGCATTTCCTTATATTTGTATTACAATCGTTGTGATTTTAGTATTTTCATTTTCTATATCATATTTATCACTCCTCTCTTTTATTTACATTTGAACTGAATGTAGAACCTACGGTTGAAATCAAGGGTAGGGAATCGCAATCCCTCCAATATAACATATGAATGTTAACAGAGTTCTACTAAAAAGTAGACAATTAAAAATAAATAGAAAAGTTGATTTAACTTTTAGTGTTGGATGACTAGTAAAATAAGAGCTAGAAATGTTGATTTGTATTTTGTTCTGATACATATTTTTGTTGTAGACGCATTATGTTCTCCTGCTCTGTGCTTTTAAAGAACAATTACAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACCGGTAATTAAGTTTCAACTATCAGTAATGATATCTTTGTTTCAAATTTCCAATCATCCACGTACCATTTGCAAAGATAAAAAGCCATACATGATGCATGCATGAACAGGTGTATCTCCTGGTGAAGGGAGTGGAGCAACAATGTCGGACGATGAAGACGACCAAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCACGAGCTTAAACAGGTAGCACATTATAACTTTCTCATATATATGCAATGCAATGCAATGCAACCATGGTGTATATATTTTAGGCTTAATTACACTTTTGGCCCCCTAAGTATCCAAAAGTTGCGATTCAGGCCCCCTAAAAAAAATAACTCTTTTCAGGCCCCTTAAGTTCACTTTTGGTTGCAATTTTGGCCCCCTAGCCCAATTTTGACCCAGTCAACGCTGACGTGGACGCATATTTGAATTTTTTAATATTTTTTTTTAATTTTGTAATTAAAAAATAAATAAAAATTCTGGAAAAATGAAAAATTAATAAAAAAATTGATTTTTTTTTAAAAAATTCTAAAAAATTAAAAATTAATAAAAAATTGGAAAAAAAATATTAAAAAATTCTGAAAAATTGAAAACAATTCTGGAAAATTGAAAAATTAATAAAGAAATTGAAAAAAAATATTAAAAAATTCTGGAAAATTGAAAAATTAATAAAAATGAAAAATAATTGAAAAAATACGGAAAAATTAATAAAAATAAAAAATGATTAAAAAATTGAAAATTCATTAGTATTAAAAAAATTTAAAAATTGAAAAAAATTAAAAAAATTTAAAAATTTCGAAAATATCTGGAAAATTTGAAAACGGAATTCTGGAAAATTGAAAAAATTGAAAATTCTGGAAAATACGGAAAATATTTAAAAATTTTCGAAATTTTCATTCGTATTTTTTCTGGGAATTTTTGTGTATTTATAAACCGAGATACACATAATTTTTTGTAAACCGGAATACACATAATGAAAATTTCCCGGAAAAAATACTAATGAAAATTTTTCCAGAAAAAATACTAATGAAAATTTAGAAGTTTCGAAAAATACACTGAAAAAACCTAAGCTCGACATATATACTAATGAAAATTTCGAAATTTCGAGAAATAGTAATGAAAATTTCAAAAATTTCATTTTTTTAAAAATGATTAATCTTTTTAATTTTTTCGAAAATTTCGAATTTTTTTTAAATATTTTCCAGAATTTTTATTTTTCATTAAAATTTCGAAAATTTCATTTTTCCAGAATTTTAATTTTTTTTAGAAAATTTCGAAATTTTATTTTTTCAGAATTTTTTAGATTATTTTATTTTTTTAATCATTTTTTATTAATTTTTCAATTATCCAGAATTTTTTTAAATTTTTTTTATACGTGACATGCATGTGTCTTTGCAAAGATGAAAGAATCAATCACATAATTATTTAAAATGGATTGATTTGCATAGTTAATTAATTTAATGTTTTTTCAATATGCAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCAGGAAAGCTCCCCGGTGACACAACCTCCCTTTTGAAAGCTTGGTGGCAATCACACTCGAAATGGCCTTATCCAACTGTAAGTTTTAAGATCAATGTCCGTGACAATTGTCATATCGTATATCTATAAAAAAAAATTAATAAAAATTGGTTTTTCTCCTATGACAACTATGGAGTAAATTGAAATTAAATTAGAATTATATGATATTTTTTACTCTTAAGAATAAAACATATACCTTAAAAATTAGTATATTTTGAAACTAATCTAATATTAATTATTTTATTTAGTTATTAATATTATGGATTATTTTAAAAAAAAGGTGGAGTAGTAATATCTTTTCCTCCAATACCCTTATCCATTATTGATCTATTTAGATTAACATGTTTTTTAATCTTTATAAATAGTATATCAAAAATAGAAAGAAATATAGGAGTATTAATAAACTGGTACAAGATAGATAATATATGTATAAAAATATAAAATCTTCAATAATAATAACAATGTCCCAAAGTTTTAAATAATTCATAAAAAAAACTAATTTTATACTTCCTTCTAACAACAAAAAAGTCTTTTTTTTTTAGGGATCCAACAAAAAAGTCTTATTTTGTTATCTCAAATATAAGAAAAAAAATCAACTAACCCTATCATATTTAGTGTGATCATTCTTAAATTTAAATTTATTTTTCAATAATACTTTTAATATTAATGGAACAAGTTCCCATGAGGGTATTTTAAAGAAAATTAAATGAAGTGAACTATTTTTCTCAAAGGGTGTGAGGTAGTTTGCTTTTGTTGAATGAAATCCTAGGAAGTATATGTCGAAACTCATTTGAATAATTACCCATCTATTTTTAATTATATATCATTTTGCCACTTTCATGCGTATCAAGAAATGTAATTGATTTTATATAAAAAAATTAGAGTAAATTACACTTACCTTCCTTGAAGTTTGTTAAAATGTCACTCACACCCCTCTATTTTCTAATGGGACACAAACCTTCACTACTTAATTTTCAATGTCAAGAAAATAACTTAATCAAGAAAATGACCTAGAAAATTCAAATAAAGGTAAATTAAATAATCTCGTTCAAGGAGTTTTTTGGAAAAAATGCAAAAAGTTAGGGCACAACTCTCAAAACTTAAGAGGCAAAGTGTACAATTGTGTTTTTCTCACTGACCGTACTTAAACGGTGTTAACTTGAGGGGATGTAATTGTTTTTTTACCTTAAATATAAGGGGATTTTGTGTTGTTTAGTTAAACCTCAAAGGAGGTAAATGTAATTTTACCAAAAAATTATGAGTGATTTTATAAAATTATTCTTTATTAACATTAATAACATGTGAAAAAAAACATTAATATTTTTTTATAAGCAAAAATTATTAATATTTAATTGATATCATAAAGTGATTTATAAATTGGTAAAAACAAAATTTGTTTTCAAAATATACTTATGTGATTTGAAAATATACTAGTGAAGAGTAATTAGAAAAGTCTTGCACCCTCGTAATTTTCTCTCGAATAATACTGTGTCTCCCAATGTGTCAAGTCATAAGCATATAGTAGAACTTGATTATTTATCCGTACTAGTAATGATCAAGAAGACAACCATGACTGGTGAATTAATAACGTATTAATGTTATGTTCCAATTAATGTGCCTAGCTAACTAAGAATTCATCTACGCAACCTTGATGTTGCTGGGCATTATTTGCCTCTTCCATGAATGCTAATCATGTTAAACTCGTGAATGTACTTTTAGGAAGAAGACAAAGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAAATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCCACTGGCTCCAAAACCAAACGCAAGAGGTGAGTTTTATTTCCCTAATGGACTCTTTTTTCTTGTTTCACAATGTGTTTATTTTAGTTGATACTTAATCTGATTCTTGTTTTTTGTTTTTTGTTTTTTACTATTCATTAGTAGTGGCGCAGGTGAAACAAGTAACCAGAGTTTCGTGTGA
Protein sequence

>MS.gene043768.t1

MAFHHDHLSHEINFQPFNEEQQLNQSRDMQRLLPFTGAGAGSAPNWLNNAVNLRQQNFLHLQPDTSQNEDVRGMNMMEKTRDRNRAESNTESSEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFV