Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04380.t1 | XP_003600455.1 | 81.2 | 261 | 48 | 1 | 21 | 280 | 21 | 281 | 7.80E-116 | 426.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04380.t1 | Q8L3W1 | 26.2 | 321 | 171 | 7 | 21 | 280 | 20 | 335 | 7.4e-22 | 105.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04380.t1 | G8A2Z2 | 81.2 | 261 | 48 | 1 | 21 | 280 | 21 | 281 | 5.6e-116 | 426.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04380.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04380.t1 | MTR_3g061350 | 80.460 | 261 | 50 | 1 | 21 | 280 | 24 | 284 | 5.32e-155 | 434 |
| MS.gene04380.t1 | MTR_3g061370 | 81.226 | 261 | 48 | 1 | 21 | 280 | 21 | 281 | 2.94e-153 | 429 |
| MS.gene04380.t1 | MTR_3g061340 | 71.264 | 261 | 64 | 4 | 21 | 280 | 24 | 274 | 6.68e-128 | 365 |
| MS.gene04380.t1 | MTR_3g061330 | 77.193 | 228 | 51 | 1 | 21 | 247 | 24 | 251 | 5.25e-127 | 361 |
| MS.gene04380.t1 | MTR_3g061320 | 71.648 | 261 | 68 | 4 | 21 | 280 | 24 | 279 | 1.70e-126 | 361 |
| MS.gene04380.t1 | MTR_3g061310 | 69.582 | 263 | 76 | 3 | 21 | 280 | 24 | 285 | 5.28e-125 | 358 |
| MS.gene04380.t1 | MTR_3g061290 | 71.523 | 151 | 41 | 2 | 18 | 167 | 21 | 170 | 5.36e-70 | 215 |
| MS.gene04380.t1 | MTR_3g061300 | 72.727 | 121 | 33 | 0 | 159 | 279 | 2 | 122 | 1.37e-59 | 186 |
| MS.gene04380.t1 | MTR_1g035460 | 34.932 | 292 | 149 | 8 | 23 | 280 | 2 | 286 | 2.98e-47 | 162 |
| MS.gene04380.t1 | MTR_3g061220 | 67.593 | 108 | 21 | 2 | 21 | 128 | 24 | 117 | 7.05e-42 | 140 |
| MS.gene04380.t1 | MTR_1g108780 | 32.881 | 295 | 149 | 8 | 20 | 280 | 10 | 289 | 1.04e-40 | 146 |
| MS.gene04380.t1 | MTR_1g108780 | 32.456 | 114 | 72 | 3 | 171 | 280 | 345 | 457 | 6.38e-11 | 62.8 |
| MS.gene04380.t1 | MTR_8g103940 | 32.484 | 314 | 162 | 9 | 1 | 280 | 33 | 330 | 9.75e-39 | 142 |
| MS.gene04380.t1 | MTR_8g103940 | 38.384 | 99 | 53 | 3 | 186 | 280 | 400 | 494 | 2.31e-12 | 67.0 |
| MS.gene04380.t1 | MTR_7g050710 | 31.119 | 286 | 175 | 8 | 16 | 280 | 22 | 306 | 3.12e-35 | 129 |
| MS.gene04380.t1 | MTR_7g050560 | 32.714 | 269 | 166 | 6 | 21 | 280 | 27 | 289 | 6.61e-33 | 123 |
| MS.gene04380.t1 | MTR_5g044670 | 29.329 | 283 | 161 | 11 | 23 | 279 | 32 | 301 | 6.36e-32 | 120 |
| MS.gene04380.t1 | MTR_3g098790 | 29.927 | 274 | 176 | 7 | 21 | 280 | 27 | 298 | 1.79e-30 | 116 |
| MS.gene04380.t1 | MTR_7g050720 | 30.421 | 309 | 170 | 9 | 10 | 280 | 13 | 314 | 4.90e-30 | 115 |
| MS.gene04380.t1 | MTR_7g050580 | 31.502 | 273 | 164 | 6 | 21 | 280 | 27 | 289 | 5.55e-30 | 115 |
| MS.gene04380.t1 | MTR_7g050590 | 28.417 | 278 | 179 | 5 | 23 | 280 | 2 | 279 | 7.37e-29 | 112 |
| MS.gene04380.t1 | MTR_4g119990 | 27.875 | 287 | 176 | 10 | 21 | 280 | 29 | 311 | 7.67e-27 | 107 |
| MS.gene04380.t1 | MTR_3g005480 | 28.464 | 267 | 142 | 5 | 21 | 280 | 35 | 259 | 2.56e-26 | 104 |
| MS.gene04380.t1 | MTR_1g035640 | 28.731 | 268 | 174 | 6 | 21 | 279 | 19 | 278 | 4.85e-25 | 103 |
| MS.gene04380.t1 | MTR_1g035570 | 25.725 | 276 | 179 | 7 | 21 | 279 | 19 | 285 | 1.01e-24 | 102 |
| MS.gene04380.t1 | MTR_6g043890 | 26.871 | 294 | 166 | 10 | 9 | 267 | 12 | 291 | 1.13e-22 | 95.9 |
| MS.gene04380.t1 | MTR_5g070440 | 26.493 | 268 | 154 | 7 | 21 | 280 | 35 | 267 | 8.67e-22 | 92.4 |
| MS.gene04380.t1 | MTR_3g005420 | 27.715 | 267 | 152 | 7 | 21 | 280 | 303 | 535 | 8.52e-21 | 92.0 |
| MS.gene04380.t1 | MTR_3g005420 | 36.782 | 87 | 54 | 1 | 21 | 106 | 54 | 140 | 9.81e-12 | 65.5 |
| MS.gene04380.t1 | MTR_3g005490 | 27.444 | 266 | 145 | 8 | 21 | 280 | 35 | 258 | 9.04e-21 | 89.4 |
| MS.gene04380.t1 | MTR_6g061070 | 25.589 | 297 | 175 | 7 | 21 | 279 | 32 | 320 | 2.72e-19 | 87.4 |
| MS.gene04380.t1 | MTR_3g005495 | 26.641 | 259 | 137 | 6 | 21 | 274 | 257 | 467 | 3.75e-18 | 84.3 |
| MS.gene04380.t1 | MTR_3g005495 | 39.535 | 86 | 52 | 0 | 20 | 105 | 26 | 111 | 2.56e-15 | 75.9 |
| MS.gene04380.t1 | MTR_7g050640 | 40.000 | 85 | 51 | 0 | 16 | 100 | 22 | 106 | 5.53e-17 | 75.5 |
| MS.gene04380.t1 | MTR_1g035510 | 38.053 | 113 | 63 | 3 | 23 | 131 | 2 | 111 | 2.51e-16 | 76.3 |
| MS.gene04380.t1 | MTR_1g035650 | 27.869 | 183 | 118 | 3 | 21 | 197 | 23 | 197 | 1.14e-15 | 74.3 |
| MS.gene04380.t1 | MTR_1g035520 | 25.714 | 315 | 164 | 12 | 19 | 279 | 84 | 382 | 2.16e-15 | 75.9 |
| MS.gene04380.t1 | MTR_3g005460 | 25.869 | 259 | 132 | 5 | 21 | 274 | 39 | 242 | 3.25e-15 | 75.9 |
| MS.gene04380.t1 | MTR_3g005460 | 24.632 | 272 | 162 | 7 | 21 | 280 | 276 | 516 | 2.00e-14 | 73.2 |
| MS.gene04380.t1 | MTR_1g034240 | 33.613 | 119 | 69 | 2 | 21 | 130 | 21 | 138 | 3.84e-15 | 75.1 |
| MS.gene04380.t1 | MTR_1g035620 | 25.275 | 273 | 172 | 12 | 21 | 279 | 23 | 277 | 3.85e-15 | 75.1 |
| MS.gene04380.t1 | MTR_3g005440 | 37.778 | 90 | 56 | 0 | 16 | 105 | 29 | 118 | 4.48e-15 | 75.1 |
| MS.gene04380.t1 | MTR_3g005440 | 40.000 | 85 | 51 | 0 | 21 | 105 | 256 | 340 | 6.04e-14 | 71.6 |
| MS.gene04380.t1 | MTR_4g068320 | 32.203 | 118 | 72 | 1 | 21 | 130 | 20 | 137 | 9.37e-15 | 73.9 |
| MS.gene04380.t1 | MTR_1g050845 | 23.529 | 272 | 166 | 7 | 21 | 279 | 23 | 265 | 1.59e-14 | 73.9 |
| MS.gene04380.t1 | MTR_1g035480 | 35.043 | 117 | 67 | 4 | 21 | 131 | 31 | 144 | 2.59e-14 | 70.1 |
| MS.gene04380.t1 | MTR_1g033740 | 33.858 | 127 | 76 | 4 | 21 | 142 | 36 | 159 | 4.03e-14 | 69.7 |
| MS.gene04380.t1 | MTR_1g035470 | 38.596 | 114 | 62 | 3 | 23 | 131 | 2 | 112 | 6.07e-14 | 67.8 |
| MS.gene04380.t1 | MTR_1g021360 | 24.638 | 276 | 184 | 10 | 21 | 277 | 196 | 466 | 3.04e-13 | 69.7 |
| MS.gene04380.t1 | MTR_1g035440 | 39.535 | 86 | 51 | 1 | 21 | 105 | 29 | 114 | 6.42e-13 | 67.4 |
| MS.gene04380.t1 | MTR_1g035500 | 35.043 | 117 | 67 | 4 | 21 | 131 | 39 | 152 | 5.33e-12 | 63.5 |
| MS.gene04380.t1 | MTR_3g005420 | 36.782 | 87 | 54 | 1 | 21 | 106 | 35 | 121 | 8.94e-12 | 65.5 |
| MS.gene04380.t1 | MTR_1g034210 | 35.632 | 87 | 54 | 1 | 21 | 107 | 21 | 105 | 6.47e-11 | 62.4 |
| MS.gene04380.t1 | MTR_1g034210 | 35.632 | 87 | 54 | 1 | 21 | 107 | 21 | 105 | 7.63e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04380.t1 | AT3G18990 | 26.168 | 321 | 171 | 7 | 21 | 280 | 20 | 335 | 1.27e-28 | 112 |
| MS.gene04380.t1 | AT3G18990 | 26.168 | 321 | 171 | 7 | 21 | 280 | 20 | 335 | 2.38e-28 | 112 |
| MS.gene04380.t1 | AT1G49475 | 36.434 | 129 | 70 | 2 | 16 | 133 | 43 | 170 | 2.62e-17 | 78.6 |
| MS.gene04380.t1 | AT4G01580 | 37.795 | 127 | 66 | 5 | 20 | 141 | 43 | 161 | 2.50e-15 | 73.2 |
| MS.gene04380.t1 | AT3G18960 | 37.755 | 98 | 54 | 1 | 20 | 117 | 43 | 133 | 4.86e-14 | 69.7 |
| MS.gene04380.t1 | AT3G18960 | 37.755 | 98 | 54 | 1 | 20 | 117 | 43 | 133 | 5.11e-14 | 69.3 |
| MS.gene04380.t1 | AT1G49480 | 30.233 | 129 | 80 | 3 | 157 | 280 | 97 | 220 | 1.31e-13 | 68.9 |
| MS.gene04380.t1 | AT1G49480 | 30.233 | 129 | 80 | 3 | 157 | 280 | 97 | 220 | 1.31e-13 | 68.9 |
| MS.gene04380.t1 | AT1G49480 | 30.233 | 129 | 80 | 3 | 157 | 280 | 97 | 220 | 1.31e-13 | 68.9 |
| MS.gene04380.t1 | AT3G18960 | 37.113 | 97 | 54 | 1 | 21 | 117 | 7 | 96 | 4.97e-13 | 66.2 |
| MS.gene04380.t1 | AT4G33280 | 23.050 | 282 | 191 | 9 | 23 | 280 | 39 | 318 | 5.43e-11 | 62.8 |
Find 54 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAATCAGTTGAGATTT+TGG | 0.191329 | 3.4:-57141658 | MS.gene04380:CDS |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3.4:-57141887 | MS.gene04380:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.266413 | 3.4:-57141394 | MS.gene04380:CDS |
| AGACTACTGATGGCACTAAA+TGG | 0.292817 | 3.4:-57141899 | MS.gene04380:CDS |
| AATCTATTTCTAGTGCATTC+TGG | 0.311928 | 3.4:+57141733 | None:intergenic |
| ACTGATAAACAAGAAAGATT+TGG | 0.358474 | 3.4:-57140983 | MS.gene04380:CDS |
| TGGAGAGATTTGGTTTGAAA+AGG | 0.378673 | 3.4:-57141853 | MS.gene04380:CDS |
| TTTACTGAATATTACTCTCT+TGG | 0.385393 | 3.4:-57141819 | MS.gene04380:CDS |
| GAGAGGATCGAGGGGATTGC+CGG | 0.387096 | 3.4:-57143246 | MS.gene04380:CDS |
| CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3.4:-57141805 | MS.gene04380:CDS |
| GAAATTACTTCGTTGTTATG+AGG | 0.407954 | 3.4:-57141091 | MS.gene04380:CDS |
| GGAGAGATTTGGTTTGAAAA+GGG | 0.411021 | 3.4:-57141852 | MS.gene04380:CDS |
| CTACTCATCTGGTAGAAAAT+CGG | 0.421938 | 3.4:-57141295 | MS.gene04380:CDS |
| AGTGGAAGTGGACTGAAATC+AGG | 0.429019 | 3.4:-57141024 | MS.gene04380:CDS |
| AGAATGTGGTACTGCAGATT+GGG | 0.448452 | 3.4:-57141131 | MS.gene04380:CDS |
| AAGTTTGATGTATACATACT+TGG | 0.450789 | 3.4:-57141756 | MS.gene04380:CDS |
| TCTCATAAAGCCTACTCATC+TGG | 0.455995 | 3.4:-57141306 | MS.gene04380:CDS |
| AAGAATGTGGTACTGCAGAT+TGG | 0.459475 | 3.4:-57141132 | MS.gene04380:CDS |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.461112 | 3.4:-57141848 | MS.gene04380:CDS |
| AAATTACTTCGTTGTTATGA+GGG | 0.500449 | 3.4:-57141090 | MS.gene04380:CDS |
| TCAATAACCCCATTTAAAAG+TGG | 0.503683 | 3.4:+57141165 | None:intergenic |
| CGACGACATAAGAAAGTTCG+AGG | 0.503833 | 3.4:-57141582 | MS.gene04380:intron |
| AAATGGGGTTATTGAGAACA+AGG | 0.504796 | 3.4:-57141157 | MS.gene04380:CDS |
| TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3.4:-57141802 | MS.gene04380:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.518126 | 3.4:-57141786 | MS.gene04380:CDS |
| GCCACAGGATGCTAGAGCTC+AGG | 0.519514 | 3.4:-57141372 | MS.gene04380:CDS |
| TGGTACTGCAGATTGGGAAA+AGG | 0.536643 | 3.4:-57141125 | MS.gene04380:CDS |
| TCAGTAGTCTTTATCAACAC+TGG | 0.537149 | 3.4:+57141912 | None:intergenic |
| TGTCTACTAGTAAACTTACT+TGG | 0.541700 | 3.4:+57141954 | None:intergenic |
| TGTCGTCGAGGAGAAACAAA+AGG | 0.549605 | 3.4:+57141597 | None:intergenic |
| CATGACAATGACTCCGTCGC+CGG | 0.553128 | 3.4:+57143227 | None:intergenic |
| TGCAGATTGGGAAAAGGTCA+TGG | 0.561983 | 3.4:-57141119 | MS.gene04380:CDS |
| GGCTTCATCGGAAGAAGGCT+AGG | 0.562508 | 3.4:-57141629 | MS.gene04380:CDS |
| AAGTATGTATACATCAAACT+TGG | 0.563066 | 3.4:+57141758 | None:intergenic |
| GCCAACCCGCGGAAAAGCGA+CGG | 0.564559 | 3.4:+57141058 | None:intergenic |
| AGTCATTGTCATGGCGGTGA+TGG | 0.565299 | 3.4:-57143217 | MS.gene04380:intron |
| TTCATCAATAAATTGGCCAC+AGG | 0.565636 | 3.4:-57141387 | MS.gene04380:CDS |
| ATCGAGGGGATTGCCGGCGA+CGG | 0.566834 | 3.4:-57143240 | MS.gene04380:CDS |
| TGAATGGCTTCATCGGAAGA+AGG | 0.571187 | 3.4:-57141634 | MS.gene04380:CDS |
| CAAGGATGAGATCGCTAGAG+AGG | 0.588893 | 3.4:-57143263 | None:intergenic |
| TTTACTAGTAGACATGGAGT+TGG | 0.590530 | 3.4:-57141945 | MS.gene04380:CDS |
| TCCTGAGCTCTAGCATCCTG+TGG | 0.590768 | 3.4:+57141371 | None:intergenic |
| AGATCGCTAGAGAGGATCGA+GGG | 0.606908 | 3.4:-57143255 | MS.gene04380:CDS |
| CGGCGACGGAGTCATTGTCA+TGG | 0.617560 | 3.4:-57143226 | MS.gene04380:CDS |
| ATCGGAAGAAGGCTAGGCAA+AGG | 0.625153 | 3.4:-57141623 | MS.gene04380:CDS |
| GAATATTACTCTCTTGGACA+TGG | 0.627547 | 3.4:-57141813 | MS.gene04380:CDS |
| GTGTTGATAAAGACTACTGA+TGG | 0.636125 | 3.4:-57141909 | MS.gene04380:CDS |
| AGTAAGTTTACTAGTAGACA+TGG | 0.640204 | 3.4:-57141951 | MS.gene04380:CDS |
| CGAACTTTCTTATGTCGTCG+AGG | 0.659272 | 3.4:+57141585 | None:intergenic |
| TCATCTGGTAGAAAATCGGA+TGG | 0.661350 | 3.4:-57141291 | MS.gene04380:intron |
| TGAGAACAAGGATAAGAATG+TGG | 0.664188 | 3.4:-57141145 | MS.gene04380:CDS |
| GAGATCGCTAGAGAGGATCG+AGG | 0.665480 | 3.4:-57143256 | MS.gene04380:CDS |
| GATCGCTAGAGAGGATCGAG+GGG | 0.707420 | 3.4:-57143254 | MS.gene04380:CDS |
| CGACGGAGTCATTGTCATGG+CGG | 0.734461 | 3.4:-57143223 | MS.gene04380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAATACTAATATAAT+AGG | + | chr3.4:57141995-57142014 | None:intergenic | 10.0% |
| !! | AGAAAAAAAAAATTAACTCT+TGG | + | chr3.4:57142757-57142776 | None:intergenic | 15.0% |
| !! | ATTTATGTAATTATGACATT+AGG | - | chr3.4:57141824-57141843 | MS.gene04380:CDS | 15.0% |
| !! | GTCATAATTACATAAATATT+GGG | + | chr3.4:57141821-57141840 | None:intergenic | 15.0% |
| !! | GTTTATTGGAAAAAAATTAA+TGG | - | chr3.4:57142345-57142364 | MS.gene04380:intron | 15.0% |
| !! | TGTCATAATTACATAAATAT+TGG | + | chr3.4:57141822-57141841 | None:intergenic | 15.0% |
| !!! | AATTAATTGGTTTTTAGAAA+AGG | - | chr3.4:57141435-57141454 | MS.gene04380:intron | 15.0% |
| !!! | ATTAATTGGTTTTTAGAAAA+GGG | - | chr3.4:57141436-57141455 | MS.gene04380:intron | 15.0% |
| !!! | TTAAACAATGAACAAATTTT+TGG | - | chr3.4:57141303-57141322 | MS.gene04380:CDS | 15.0% |
| !! | AAAAAATTAATGGAGAGATT+TGG | - | chr3.4:57142355-57142374 | MS.gene04380:intron | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | - | chr3.4:57142824-57142843 | MS.gene04380:intron | 20.0% |
| !! | AGAAAGGAAAAAGAATTAAT+TGG | - | chr3.4:57141422-57141441 | MS.gene04380:intron | 20.0% |
| !! | ATACAATTATTCTTTCTAGA+AGG | + | chr3.4:57142191-57142210 | None:intergenic | 20.0% |
| !! | ATGGAACAATGAAAAAAAAA+TGG | - | chr3.4:57141168-57141187 | MS.gene04380:CDS | 20.0% |
| !! | GTAATTGTGAGATAAAAATT+AGG | - | chr3.4:57141656-57141675 | MS.gene04380:CDS | 20.0% |
| !! | TGAGATAAAAATTAGGTTTA+GGG | - | chr3.4:57141663-57141682 | MS.gene04380:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | + | chr3.4:57142901-57142920 | None:intergenic | 20.0% |
| !!! | TAGCACTAGAAATTTTATTA+TGG | - | chr3.4:57142128-57142147 | MS.gene04380:intron | 20.0% |
| !!! | TTCTTTTCAGTATACATAAT+GGG | - | chr3.4:57142679-57142698 | MS.gene04380:intron | 20.0% |
| !!! | TTTCTTTTCAGTATACATAA+TGG | - | chr3.4:57142678-57142697 | MS.gene04380:intron | 20.0% |
| ! | AAATTACTTCGTTGTTATGA+GGG | - | chr3.4:57143128-57143147 | MS.gene04380:intron | 25.0% |
| ! | AAGTATGTATACATCAAACT+TGG | + | chr3.4:57142463-57142482 | None:intergenic | 25.0% |
| ! | AAGTTTGATGTATACATACT+TGG | - | chr3.4:57142462-57142481 | MS.gene04380:intron | 25.0% |
| ! | ACTGATAAACAAGAAAGATT+TGG | - | chr3.4:57143235-57143254 | MS.gene04380:CDS | 25.0% |
| ! | GAAAAAAGTTACTCTATGAA+GGG | - | chr3.4:57141325-57141344 | MS.gene04380:CDS | 25.0% |
| ! | GTGAGATAAAAATTAGGTTT+AGG | - | chr3.4:57141662-57141681 | MS.gene04380:CDS | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | + | chr3.4:57142235-57142254 | None:intergenic | 25.0% |
| ! | TGAAATAACCAATATGTCAT+GGG | - | chr3.4:57141537-57141556 | MS.gene04380:intron | 25.0% |
| ! | TTCTTCAAACTAATCTTCAT+AGG | - | chr3.4:57141957-57141976 | MS.gene04380:CDS | 25.0% |
| ! | TTGAAATAACCAATATGTCA+TGG | - | chr3.4:57141536-57141555 | MS.gene04380:intron | 25.0% |
| ! | TTTACTGAATATTACTCTCT+TGG | - | chr3.4:57142399-57142418 | MS.gene04380:intron | 25.0% |
| !! | GTTGAAAATCACAAACTTTT+GGG | - | chr3.4:57141356-57141375 | MS.gene04380:CDS | 25.0% |
| !!! | ACTGTTTTTGTGATATCATT+TGG | + | chr3.4:57141492-57141511 | None:intergenic | 25.0% |
| !!! | TTTTTCAAAACCCTCAAAAA+AGG | - | chr3.4:57141618-57141637 | MS.gene04380:CDS | 25.0% |
| AGTAAGTTTACTAGTAGACA+TGG | - | chr3.4:57142267-57142286 | MS.gene04380:intron | 30.0% | |
| ATGTAATTATGACATTAGGC+AGG | - | chr3.4:57141828-57141847 | MS.gene04380:CDS | 30.0% | |
| CACAGATAAAGTAAAAGAGA+TGG | - | chr3.4:57141221-57141240 | MS.gene04380:intron | 30.0% | |
| GAAATTACTTCGTTGTTATG+AGG | - | chr3.4:57143127-57143146 | MS.gene04380:intron | 30.0% | |
| GAAGAATGATCTTGAAGAAA+CGG | + | chr3.4:57141943-57141962 | None:intergenic | 30.0% | |
| GATATCACAAAAACAGTAAG+TGG | - | chr3.4:57141495-57141514 | MS.gene04380:intron | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | - | chr3.4:57142331-57142350 | MS.gene04380:intron | 30.0% | |
| GGAAAAAAGTTACTCTATGA+AGG | - | chr3.4:57141324-57141343 | MS.gene04380:CDS | 30.0% | |
| TAATGTTGGATATCATGTAG+TGG | - | chr3.4:57141463-57141482 | MS.gene04380:intron | 30.0% | |
| TACTCTATGAAGGGAAAAAA+TGG | - | chr3.4:57141334-57141353 | MS.gene04380:CDS | 30.0% | |
| TAGAAAAGGGAGTTTAATGT+TGG | - | chr3.4:57141449-57141468 | MS.gene04380:intron | 30.0% | |
| TCAATAACCCCATTTAAAAG+TGG | + | chr3.4:57143056-57143075 | None:intergenic | 30.0% | |
| TGGAGAGAAATTACTTTCTT+TGG | - | chr3.4:57141574-57141593 | MS.gene04380:intron | 30.0% | |
| TGTCTACTAGTAAACTTACT+TGG | + | chr3.4:57142267-57142286 | None:intergenic | 30.0% | |
| ! | ATTCTTTCTAGAAGGTAAAG+TGG | + | chr3.4:57142183-57142202 | None:intergenic | 30.0% |
| ! | CTTTTTCCTTTCTTTCCAAA+CGG | + | chr3.4:57141415-57141434 | None:intergenic | 30.0% |
| ! | GAAAGCTCTTCATTTGTTAA+TGG | + | chr3.4:57141873-57141892 | None:intergenic | 30.0% |
| ! | GGTTGAAAATCACAAACTTT+TGG | - | chr3.4:57141355-57141374 | MS.gene04380:CDS | 30.0% |
| ! | TGATGAATCAGTTGAGATTT+TGG | - | chr3.4:57142560-57142579 | MS.gene04380:intron | 30.0% |
| !! | AATCTATTTCTAGTGCATTC+TGG | + | chr3.4:57142488-57142507 | None:intergenic | 30.0% |
| !! | AGTGTGTACCACTTTTAAAT+GGG | - | chr3.4:57143045-57143064 | MS.gene04380:intron | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3.4:57142432-57142451 | MS.gene04380:intron | 30.0% |
| AAAAAGGGTTCAAAACCGTT+TGG | - | chr3.4:57141397-57141416 | MS.gene04380:CDS | 35.0% | |
| AAATGGGGTTATTGAGAACA+AGG | - | chr3.4:57143061-57143080 | MS.gene04380:intron | 35.0% | |
| AATGATCTTGAAGAAACGGA+TGG | + | chr3.4:57141939-57141958 | None:intergenic | 35.0% | |
| ACATAAGAAAGTTCGAGGTT+TGG | - | chr3.4:57142641-57142660 | MS.gene04380:intron | 35.0% | |
| AGATTGCGAAGGAGAAAAAA+GGG | - | chr3.4:57141382-57141401 | MS.gene04380:CDS | 35.0% | |
| ATGATCTTGAAGAAACGGAT+GGG | + | chr3.4:57141938-57141957 | None:intergenic | 35.0% | |
| CATGGGTTCAAATCTTTCTT+TGG | - | chr3.4:57141554-57141573 | MS.gene04380:intron | 35.0% | |
| CTACTCATCTGGTAGAAAAT+CGG | - | chr3.4:57142923-57142942 | MS.gene04380:intron | 35.0% | |
| GAATATTACTCTCTTGGACA+TGG | - | chr3.4:57142405-57142424 | MS.gene04380:intron | 35.0% | |
| GATTTGAACCCATGACATAT+TGG | + | chr3.4:57141548-57141567 | None:intergenic | 35.0% | |
| GTTGGTTAGTGATGATTGTT+TGG | - | chr3.4:57141082-57141101 | MS.gene04380:CDS | 35.0% | |
| TACATTGCACACATATATGC+AGG | - | chr3.4:57142781-57142800 | MS.gene04380:intron | 35.0% | |
| TAGATTGCGAAGGAGAAAAA+AGG | - | chr3.4:57141381-57141400 | MS.gene04380:CDS | 35.0% | |
| TCAAAACCGTTTGGAAAGAA+AGG | - | chr3.4:57141406-57141425 | MS.gene04380:CDS | 35.0% | |
| TCAGTAGTCTTTATCAACAC+TGG | + | chr3.4:57142309-57142328 | None:intergenic | 35.0% | |
| TGAGAACAAGGATAAGAATG+TGG | - | chr3.4:57143073-57143092 | MS.gene04380:intron | 35.0% | |
| TTCATCAATAAATTGGCCAC+AGG | - | chr3.4:57142831-57142850 | MS.gene04380:intron | 35.0% | |
| TTTACTAGTAGACATGGAGT+TGG | - | chr3.4:57142273-57142292 | MS.gene04380:intron | 35.0% | |
| ! | ACCTTTTTCTAAGTGACCAA+AGG | - | chr3.4:57142216-57142235 | MS.gene04380:intron | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+TGG | - | chr3.4:57142568-57142587 | MS.gene04380:intron | 35.0% |
| ! | CCTTTTTCTAAGTGACCAAA+GGG | - | chr3.4:57142217-57142236 | MS.gene04380:intron | 35.0% |
| ! | CTTTTTCTAAGTGACCAAAG+GGG | - | chr3.4:57142218-57142237 | MS.gene04380:intron | 35.0% |
| ! | GTGTTGATAAAGACTACTGA+TGG | - | chr3.4:57142309-57142328 | MS.gene04380:intron | 35.0% |
| ! | TTTTGGATGAATGGCTTCAT+CGG | - | chr3.4:57142577-57142596 | MS.gene04380:intron | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3.4:57142370-57142389 | MS.gene04380:intron | 35.0% |
| !! | CAGTGTGTACCACTTTTAAA+TGG | - | chr3.4:57143044-57143063 | MS.gene04380:intron | 35.0% |
| !! | GGAGAGATTTGGTTTGAAAA+GGG | - | chr3.4:57142366-57142385 | MS.gene04380:intron | 35.0% |
| !! | GTGTGTACCACTTTTAAATG+GGG | - | chr3.4:57143046-57143065 | MS.gene04380:intron | 35.0% |
| !! | TGGAGAGATTTGGTTTGAAA+AGG | - | chr3.4:57142365-57142384 | MS.gene04380:intron | 35.0% |
| !!! | CTCTTGTTTTTAAGTGGAAG+TGG | - | chr3.4:57143182-57143201 | MS.gene04380:intron | 35.0% |
| AAGAATGTGGTACTGCAGAT+TGG | - | chr3.4:57143086-57143105 | MS.gene04380:intron | 40.0% | |
| AGAATGTGGTACTGCAGATT+GGG | - | chr3.4:57143087-57143106 | MS.gene04380:intron | 40.0% | |
| AGACTACTGATGGCACTAAA+TGG | - | chr3.4:57142319-57142338 | MS.gene04380:intron | 40.0% | |
| CACAAAAACAGTAAGTGGCT+TGG | - | chr3.4:57141500-57141519 | MS.gene04380:intron | 40.0% | |
| CCCTTTGGTCACTTAGAAAA+AGG | + | chr3.4:57142220-57142239 | None:intergenic | 40.0% | |
| GAACAGAAAAGTGAGAGAGA+GGG | - | chr3.4:57141143-57141162 | MS.gene04380:CDS | 40.0% | |
| TCAAAACCCTCAAAAAAGGC+AGG | - | chr3.4:57141622-57141641 | MS.gene04380:CDS | 40.0% | |
| TCATCTGGTAGAAAATCGGA+TGG | - | chr3.4:57142927-57142946 | MS.gene04380:intron | 40.0% | |
| TCTCATAAAGCCTACTCATC+TGG | - | chr3.4:57142912-57142931 | MS.gene04380:intron | 40.0% | |
| TGAACAGAAAAGTGAGAGAG+AGG | - | chr3.4:57141142-57141161 | MS.gene04380:CDS | 40.0% | |
| TGATCTTGAAGAAACGGATG+GGG | + | chr3.4:57141937-57141956 | None:intergenic | 40.0% | |
| TGGTAGAAAATCGGATGGTA+AGG | - | chr3.4:57142932-57142951 | MS.gene04380:intron | 40.0% | |
| TTGTTTGGTTACTGCACTGA+TGG | - | chr3.4:57141097-57141116 | MS.gene04380:CDS | 40.0% | |
| ! | AAAAACAGTAAGTGGCTTGG+TGG | - | chr3.4:57141503-57141522 | MS.gene04380:intron | 40.0% |
| ! | AGAAAGTTCGAGGTTTGGTT+TGG | - | chr3.4:57142646-57142665 | MS.gene04380:intron | 40.0% |
| ! | CGATTTTCTACCAGATGAGT+AGG | + | chr3.4:57142925-57142944 | None:intergenic | 40.0% |
| !!! | CTTTTGGGTTTAGATTGCGA+AGG | - | chr3.4:57141371-57141390 | MS.gene04380:CDS | 40.0% |
| !!! | GGTTGGCTCTTGTTTTTAAG+TGG | - | chr3.4:57143176-57143195 | MS.gene04380:intron | 40.0% |
| AAAAGTGAGAGAGAGGGAGA+TGG | - | chr3.4:57141149-57141168 | MS.gene04380:CDS | 45.0% | |
| AAACCCTCAAAAAAGGCAGG+AGG | - | chr3.4:57141625-57141644 | MS.gene04380:CDS | 45.0% | |
| CGAACTTTCTTATGTCGTCG+AGG | + | chr3.4:57142636-57142655 | None:intergenic | 45.0% | |
| CGACGACATAAGAAAGTTCG+AGG | - | chr3.4:57142636-57142655 | MS.gene04380:intron | 45.0% | |
| CGATGTTCAAACTCCATCCA+TGG | - | chr3.4:57141892-57141911 | MS.gene04380:CDS | 45.0% | |
| GATAGAGATTCCTCTAGCCA+TGG | + | chr3.4:57141912-57141931 | None:intergenic | 45.0% | |
| TAAAAACAAGAGCCAACCCG+CGG | + | chr3.4:57143174-57143193 | None:intergenic | 45.0% | |
| TGAATGGCTTCATCGGAAGA+AGG | - | chr3.4:57142584-57142603 | MS.gene04380:intron | 45.0% | |
| TGCAGATTGGGAAAAGGTCA+TGG | - | chr3.4:57143099-57143118 | MS.gene04380:intron | 45.0% | |
| TGGTACTGCAGATTGGGAAA+AGG | - | chr3.4:57143093-57143112 | MS.gene04380:intron | 45.0% | |
| TGTCGTCGAGGAGAAACAAA+AGG | + | chr3.4:57142624-57142643 | None:intergenic | 45.0% | |
| ! | GAAGAGTCGCACGATTTTGT+AGG | - | chr3.4:57141794-57141813 | MS.gene04380:CDS | 45.0% |
| !! | AGTGGAAGTGGACTGAAATC+AGG | - | chr3.4:57143194-57143213 | MS.gene04380:intron | 45.0% |
| !! | TGGTTTGTTAACGGTGACGA+CGG | - | chr3.4:57141054-57141073 | MS.gene04380:CDS | 45.0% |
| !!! | TGTCCTCCTGCCTTTTTTGA+GGG | + | chr3.4:57141631-57141650 | None:intergenic | 45.0% |
| AGATCGCTAGAGAGGATCGA+GGG | - | chr3.4:57140963-57140982 | MS.gene04380:CDS | 50.0% | |
| AGTCATTGTCATGGCGGTGA+TGG | - | chr3.4:57141001-57141020 | MS.gene04380:CDS | 50.0% | |
| ATCGGAAGAAGGCTAGGCAA+AGG | - | chr3.4:57142595-57142614 | MS.gene04380:intron | 50.0% | |
| ATGAAAGTTGACCGCGACGA+TGG | - | chr3.4:57141034-57141053 | MS.gene04380:CDS | 50.0% | |
| CAAACTCCATCCATGGCTAG+AGG | - | chr3.4:57141899-57141918 | MS.gene04380:CDS | 50.0% | |
| CATGTTGCAAGTGTGATGCG+TGG | + | chr3.4:57142039-57142058 | None:intergenic | 50.0% | |
| CCGTTAACAAACCATCGTCG+CGG | + | chr3.4:57141048-57141067 | None:intergenic | 50.0% | |
| GAGATTCCTCTAGCCATGGA+TGG | + | chr3.4:57141908-57141927 | None:intergenic | 50.0% | |
| TCTTGAAGAAACGGATGGGG+AGG | + | chr3.4:57141934-57141953 | None:intergenic | 50.0% | |
| ! | TGGTTACTGCACTGATGGTG+TGG | - | chr3.4:57141102-57141121 | MS.gene04380:CDS | 50.0% |
| !! | CCGCGACGATGGTTTGTTAA+CGG | - | chr3.4:57141045-57141064 | MS.gene04380:CDS | 50.0% |
| !!! | ATATGACCGTCGCTTTTCCG+CGG | - | chr3.4:57143154-57143173 | MS.gene04380:intron | 50.0% |
| !!! | GTGTCCTCCTGCCTTTTTTG+AGG | + | chr3.4:57141632-57141651 | None:intergenic | 50.0% |
| CATGACAATGACTCCGTCGC+CGG | + | chr3.4:57140994-57141013 | None:intergenic | 55.0% | |
| CGACGGAGTCATTGTCATGG+CGG | - | chr3.4:57140995-57141014 | MS.gene04380:CDS | 55.0% | |
| CTCTCTTGGACATGGCTGCT+TGG | - | chr3.4:57142413-57142432 | MS.gene04380:intron | 55.0% | |
| GAGATCGCTAGAGAGGATCG+AGG | - | chr3.4:57140962-57140981 | MS.gene04380:CDS | 55.0% | |
| GATCGCTAGAGAGGATCGAG+GGG | - | chr3.4:57140964-57140983 | MS.gene04380:CDS | 55.0% | |
| GGCTTCATCGGAAGAAGGCT+AGG | - | chr3.4:57142589-57142608 | MS.gene04380:intron | 55.0% | |
| GTTAACGGTGACGACGGTGA+CGG | - | chr3.4:57141060-57141079 | MS.gene04380:CDS | 55.0% | |
| TCTTGGACATGGCTGCTTGG+TGG | - | chr3.4:57142416-57142435 | MS.gene04380:intron | 55.0% | |
| ! | TCCTGAGCTCTAGCATCCTG+TGG | + | chr3.4:57142850-57142869 | None:intergenic | 55.0% |
| !!! | TATGACCGTCGCTTTTCCGC+GGG | - | chr3.4:57143155-57143174 | MS.gene04380:intron | 55.0% |
| CGGCGACGGAGTCATTGTCA+TGG | - | chr3.4:57140992-57141011 | MS.gene04380:CDS | 60.0% | |
| GAGAGGATCGAGGGGATTGC+CGG | - | chr3.4:57140972-57140991 | MS.gene04380:CDS | 60.0% | |
| GCCACAGGATGCTAGAGCTC+AGG | - | chr3.4:57142846-57142865 | MS.gene04380:intron | 60.0% | |
| ATCGAGGGGATTGCCGGCGA+CGG | - | chr3.4:57140978-57140997 | MS.gene04380:CDS | 65.0% | |
| GCCAACCCGCGGAAAAGCGA+CGG | + | chr3.4:57143163-57143182 | None:intergenic | 65.0% | |
| ! | ACGGTGACGACGGTGACGGT+TGG | - | chr3.4:57141064-57141083 | MS.gene04380:CDS | 65.0% |
| !!! | ACCGTCGCTTTTCCGCGGGT+TGG | - | chr3.4:57143159-57143178 | MS.gene04380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 57140960 | 57143280 | 57140960 | ID=MS.gene04380 |
| chr3.4 | mRNA | 57140960 | 57143280 | 57140960 | ID=MS.gene04380.t1;Parent=MS.gene04380 |
| chr3.4 | exon | 57143218 | 57143280 | 57143218 | ID=MS.gene04380.t1.exon1;Parent=MS.gene04380.t1 |
| chr3.4 | CDS | 57143218 | 57143280 | 57143218 | ID=cds.MS.gene04380.t1;Parent=MS.gene04380.t1 |
| chr3.4 | exon | 57141583 | 57141982 | 57141583 | ID=MS.gene04380.t1.exon2;Parent=MS.gene04380.t1 |
| chr3.4 | CDS | 57141583 | 57141982 | 57141583 | ID=cds.MS.gene04380.t1;Parent=MS.gene04380.t1 |
| chr3.4 | exon | 57141292 | 57141437 | 57141292 | ID=MS.gene04380.t1.exon3;Parent=MS.gene04380.t1 |
| chr3.4 | CDS | 57141292 | 57141437 | 57141292 | ID=cds.MS.gene04380.t1;Parent=MS.gene04380.t1 |
| chr3.4 | exon | 57140960 | 57141193 | 57140960 | ID=MS.gene04380.t1.exon4;Parent=MS.gene04380.t1 |
| chr3.4 | CDS | 57140960 | 57141193 | 57140960 | ID=cds.MS.gene04380.t1;Parent=MS.gene04380.t1 |
| Gene Sequence |
| Protein sequence |
