Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04381.t1 | XP_003600455.1 | 77.5 | 285 | 59 | 3 | 1 | 284 | 1 | 281 | 1.30E-116 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04381.t1 | Q8L3W1 | 26.0 | 335 | 183 | 9 | 12 | 285 | 6 | 336 | 1.6e-22 | 108.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04381.t1 | G8A2Z2 | 77.5 | 285 | 59 | 3 | 1 | 284 | 1 | 281 | 9.1e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04381.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04381.t1 | MTR_3g061370 | 77.544 | 285 | 59 | 3 | 1 | 284 | 1 | 281 | 4.18e-156 | 437 |
| MS.gene04381.t1 | MTR_3g061350 | 74.737 | 285 | 70 | 2 | 1 | 284 | 1 | 284 | 5.32e-152 | 426 |
| MS.gene04381.t1 | MTR_3g061320 | 71.479 | 284 | 76 | 3 | 1 | 284 | 1 | 279 | 5.84e-144 | 406 |
| MS.gene04381.t1 | MTR_3g061330 | 78.968 | 252 | 51 | 2 | 1 | 251 | 1 | 251 | 2.10e-143 | 404 |
| MS.gene04381.t1 | MTR_3g061340 | 70.526 | 285 | 72 | 4 | 1 | 284 | 1 | 274 | 8.97e-142 | 400 |
| MS.gene04381.t1 | MTR_3g061310 | 69.123 | 285 | 87 | 1 | 1 | 284 | 1 | 285 | 4.82e-141 | 399 |
| MS.gene04381.t1 | MTR_3g061290 | 76.730 | 159 | 37 | 0 | 1 | 159 | 1 | 159 | 7.22e-87 | 258 |
| MS.gene04381.t1 | MTR_3g061220 | 69.466 | 131 | 26 | 2 | 1 | 131 | 1 | 117 | 2.18e-56 | 177 |
| MS.gene04381.t1 | MTR_3g061300 | 66.935 | 124 | 40 | 1 | 162 | 285 | 2 | 124 | 2.31e-52 | 167 |
| MS.gene04381.t1 | MTR_8g103940 | 33.333 | 312 | 159 | 8 | 10 | 287 | 37 | 333 | 1.84e-49 | 171 |
| MS.gene04381.t1 | MTR_8g103940 | 37.391 | 115 | 67 | 3 | 174 | 285 | 383 | 495 | 4.33e-13 | 69.7 |
| MS.gene04381.t1 | MTR_1g035460 | 35.714 | 294 | 147 | 10 | 26 | 285 | 2 | 287 | 5.93e-46 | 159 |
| MS.gene04381.t1 | MTR_1g108780 | 31.879 | 298 | 153 | 8 | 21 | 285 | 10 | 290 | 8.76e-42 | 150 |
| MS.gene04381.t1 | MTR_1g108780 | 34.615 | 130 | 78 | 4 | 162 | 285 | 330 | 458 | 6.97e-11 | 62.8 |
| MS.gene04381.t1 | MTR_7g050560 | 33.673 | 294 | 167 | 8 | 9 | 286 | 10 | 291 | 2.99e-41 | 145 |
| MS.gene04381.t1 | MTR_7g050710 | 30.897 | 301 | 187 | 6 | 7 | 286 | 8 | 308 | 2.18e-40 | 143 |
| MS.gene04381.t1 | MTR_5g044670 | 29.310 | 290 | 187 | 7 | 12 | 285 | 16 | 303 | 5.90e-37 | 134 |
| MS.gene04381.t1 | MTR_3g098790 | 30.928 | 291 | 188 | 6 | 9 | 286 | 10 | 300 | 7.39e-36 | 131 |
| MS.gene04381.t1 | MTR_7g050720 | 29.299 | 314 | 190 | 9 | 4 | 285 | 2 | 315 | 8.70e-33 | 123 |
| MS.gene04381.t1 | MTR_7g050580 | 31.034 | 290 | 184 | 8 | 7 | 286 | 8 | 291 | 1.33e-32 | 122 |
| MS.gene04381.t1 | MTR_1g035640 | 30.035 | 283 | 178 | 8 | 12 | 285 | 9 | 280 | 8.67e-31 | 120 |
| MS.gene04381.t1 | MTR_7g050590 | 28.767 | 292 | 165 | 8 | 26 | 286 | 2 | 281 | 4.46e-29 | 112 |
| MS.gene04381.t1 | MTR_4g119990 | 30.990 | 313 | 164 | 13 | 10 | 284 | 13 | 311 | 5.52e-28 | 111 |
| MS.gene04381.t1 | MTR_3g005480 | 27.599 | 279 | 158 | 6 | 12 | 285 | 21 | 260 | 2.64e-27 | 107 |
| MS.gene04381.t1 | MTR_3g005490 | 27.660 | 282 | 157 | 7 | 12 | 287 | 21 | 261 | 2.95e-27 | 107 |
| MS.gene04381.t1 | MTR_6g061070 | 27.273 | 330 | 170 | 10 | 2 | 283 | 13 | 320 | 1.46e-26 | 108 |
| MS.gene04381.t1 | MTR_5g070440 | 27.798 | 277 | 168 | 5 | 12 | 285 | 21 | 268 | 1.77e-26 | 105 |
| MS.gene04381.t1 | MTR_1g035570 | 26.936 | 297 | 180 | 9 | 12 | 287 | 9 | 289 | 1.45e-25 | 105 |
| MS.gene04381.t1 | MTR_6g043890 | 28.041 | 296 | 170 | 9 | 10 | 275 | 13 | 295 | 4.44e-24 | 100 |
| MS.gene04381.t1 | MTR_3g005420 | 27.437 | 277 | 169 | 5 | 12 | 285 | 289 | 536 | 8.18e-23 | 98.6 |
| MS.gene04381.t1 | MTR_3g005420 | 24.000 | 275 | 146 | 8 | 12 | 278 | 40 | 259 | 5.87e-14 | 72.4 |
| MS.gene04381.t1 | MTR_3g005460 | 26.923 | 286 | 169 | 7 | 10 | 284 | 260 | 516 | 4.24e-22 | 96.3 |
| MS.gene04381.t1 | MTR_3g005460 | 23.985 | 271 | 149 | 5 | 12 | 278 | 25 | 242 | 7.46e-16 | 77.8 |
| MS.gene04381.t1 | MTR_3g005495 | 28.676 | 272 | 142 | 8 | 12 | 278 | 243 | 467 | 1.33e-20 | 91.7 |
| MS.gene04381.t1 | MTR_3g005495 | 31.731 | 104 | 71 | 0 | 25 | 128 | 28 | 131 | 9.44e-13 | 68.6 |
| MS.gene04381.t1 | MTR_1g034240 | 34.783 | 138 | 78 | 3 | 8 | 133 | 1 | 138 | 2.15e-20 | 90.9 |
| MS.gene04381.t1 | MTR_4g068320 | 33.333 | 132 | 78 | 2 | 12 | 133 | 6 | 137 | 5.45e-20 | 89.7 |
| MS.gene04381.t1 | MTR_1g035620 | 25.260 | 289 | 185 | 9 | 9 | 283 | 6 | 277 | 6.36e-20 | 89.4 |
| MS.gene04381.t1 | MTR_1g035650 | 29.016 | 193 | 123 | 4 | 9 | 194 | 6 | 191 | 2.48e-19 | 84.3 |
| MS.gene04381.t1 | MTR_1g035520 | 28.296 | 311 | 174 | 11 | 15 | 283 | 79 | 382 | 2.04e-18 | 84.7 |
| MS.gene04381.t1 | MTR_7g050640 | 40.625 | 96 | 55 | 1 | 10 | 103 | 11 | 106 | 4.48e-18 | 78.6 |
| MS.gene04381.t1 | MTR_1g035510 | 38.053 | 113 | 63 | 3 | 26 | 134 | 2 | 111 | 1.49e-16 | 77.4 |
| MS.gene04381.t1 | MTR_1g034210 | 37.168 | 113 | 66 | 3 | 7 | 117 | 3 | 112 | 1.65e-16 | 79.0 |
| MS.gene04381.t1 | MTR_1g034210 | 37.168 | 113 | 66 | 3 | 7 | 117 | 3 | 112 | 2.25e-16 | 79.0 |
| MS.gene04381.t1 | MTR_1g033740 | 28.218 | 202 | 115 | 8 | 2 | 196 | 12 | 190 | 1.13e-15 | 74.3 |
| MS.gene04381.t1 | MTR_1g050845 | 23.264 | 288 | 180 | 7 | 9 | 283 | 6 | 265 | 1.39e-15 | 77.4 |
| MS.gene04381.t1 | MTR_1g035440 | 38.235 | 102 | 60 | 2 | 10 | 108 | 13 | 114 | 2.72e-15 | 74.3 |
| MS.gene04381.t1 | MTR_1g035480 | 31.206 | 141 | 86 | 5 | 2 | 134 | 7 | 144 | 4.96e-15 | 72.0 |
| MS.gene04381.t1 | MTR_1g035470 | 39.130 | 115 | 60 | 4 | 26 | 134 | 2 | 112 | 1.17e-14 | 70.1 |
| MS.gene04381.t1 | MTR_1g021360 | 21.528 | 288 | 207 | 6 | 10 | 281 | 182 | 466 | 1.37e-14 | 73.9 |
| MS.gene04381.t1 | MTR_3g005440 | 30.172 | 116 | 81 | 0 | 13 | 128 | 23 | 138 | 2.38e-14 | 73.2 |
| MS.gene04381.t1 | MTR_3g005440 | 37.931 | 87 | 54 | 0 | 22 | 108 | 254 | 340 | 2.94e-13 | 70.1 |
| MS.gene04381.t1 | MTR_3g005420 | 24.460 | 278 | 141 | 10 | 12 | 278 | 21 | 240 | 5.14e-14 | 72.4 |
| MS.gene04381.t1 | MTR_1g035500 | 30.496 | 141 | 87 | 5 | 2 | 134 | 15 | 152 | 1.43e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04381.t1 | AT3G18990 | 26.176 | 340 | 185 | 10 | 8 | 285 | 1 | 336 | 9.11e-32 | 120 |
| MS.gene04381.t1 | AT3G18990 | 26.176 | 340 | 185 | 10 | 8 | 285 | 1 | 336 | 1.95e-31 | 120 |
| MS.gene04381.t1 | AT1G49475 | 38.017 | 121 | 71 | 3 | 11 | 129 | 33 | 151 | 1.12e-18 | 82.4 |
| MS.gene04381.t1 | AT4G01580 | 31.159 | 138 | 87 | 2 | 11 | 146 | 29 | 160 | 1.52e-16 | 76.6 |
| MS.gene04381.t1 | AT3G18960 | 37.000 | 100 | 61 | 1 | 11 | 108 | 29 | 128 | 2.96e-16 | 75.9 |
| MS.gene04381.t1 | AT3G18960 | 37.000 | 100 | 61 | 1 | 11 | 108 | 29 | 128 | 3.35e-16 | 75.9 |
| MS.gene04381.t1 | AT4G33280 | 25.083 | 303 | 194 | 10 | 10 | 285 | 23 | 319 | 1.24e-15 | 76.3 |
| MS.gene04381.t1 | AT3G18960 | 39.286 | 84 | 51 | 0 | 25 | 108 | 8 | 91 | 1.62e-13 | 67.8 |
| MS.gene04381.t1 | AT1G49480 | 29.457 | 129 | 84 | 4 | 160 | 285 | 97 | 221 | 3.43e-13 | 68.2 |
| MS.gene04381.t1 | AT1G49480 | 29.457 | 129 | 84 | 4 | 160 | 285 | 97 | 221 | 3.43e-13 | 68.2 |
| MS.gene04381.t1 | AT1G49480 | 29.457 | 129 | 84 | 4 | 160 | 285 | 97 | 221 | 3.43e-13 | 68.2 |
Find 55 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCACATAAGAAAGTTAA+AGG | 0.201598 | 3.4:+57150856 | MS.gene04381:CDS |
| CTCTCTTGGACATGGCTCTT+TGG | 0.220059 | 3.4:+57150633 | MS.gene04381:CDS |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3.4:+57150551 | MS.gene04381:CDS |
| TCCTGAGCTCTAGCATCTTT+TGG | 0.280232 | 3.4:-57151541 | None:intergenic |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | 3.4:-57149767 | None:intergenic |
| AGACTACTGATGGCACTAAA+TGG | 0.292817 | 3.4:+57150539 | MS.gene04381:CDS |
| AATCTATTTCCACTGCATTC+AGG | 0.325336 | 3.4:-57150705 | None:intergenic |
| TTTACTGAAAATTACTCTCT+TGG | 0.363298 | 3.4:+57150619 | MS.gene04381:CDS |
| AAAGAACTTCATCAATGAAT+TGG | 0.387908 | 3.4:+57151518 | MS.gene04381:CDS |
| TGGTGAGATTTGGTTGGAAA+AGG | 0.389295 | 3.4:+57150585 | MS.gene04381:CDS |
| TTGAATATAAAGGAACTTCC+AGG | 0.390030 | 3.4:+57150662 | MS.gene04381:CDS |
| TATGTAACTGCAGATTTAAA+AGG | 0.392361 | 3.4:+57151761 | MS.gene04381:CDS |
| AAGAAATCAATGGTGAGATT+TGG | 0.402992 | 3.4:+57150575 | MS.gene04381:CDS |
| TCTTAGATGAATGGCTTAAT+CGG | 0.403352 | 3.4:+57150797 | MS.gene04381:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.416414 | 3.4:+57150652 | MS.gene04381:CDS |
| CACTTGAGATCTTAGATGAA+TGG | 0.431142 | 3.4:+57150788 | MS.gene04381:CDS |
| AGTATGTGATTCTGCAGATT+GGG | 0.463556 | 3.4:+57151804 | MS.gene04381:CDS |
| AAACCTTTAACTTTCTTATG+TGG | 0.464229 | 3.4:-57150859 | None:intergenic |
| TCCTTTGAAGATTAGTTTGG+AGG | 0.466963 | 3.4:-57149764 | None:intergenic |
| ACTTCAAACAGATACATTAA+CGG | 0.476013 | 3.4:-57152005 | None:intergenic |
| TTCACTTTCGCTTGCAAACA+AGG | 0.476076 | 3.4:-57151900 | None:intergenic |
| AATCAATGGTGAGATTTGGT+TGG | 0.484313 | 3.4:+57150579 | MS.gene04381:CDS |
| AAATACCAAGTAAGTTTACT+AGG | 0.486071 | 3.4:+57150479 | MS.gene04381:CDS |
| AGATTTGGTTGGAAAAGGGT+TGG | 0.493581 | 3.4:+57150590 | MS.gene04381:CDS |
| TGCAGATTGGGAAAAGATCA+TGG | 0.498577 | 3.4:+57151816 | MS.gene04381:CDS |
| GATATAATTTCCTTTAGCCA+TGG | 0.504996 | 3.4:-57149715 | None:intergenic |
| TTAACTTTCTTATGTGGTCG+AGG | 0.505436 | 3.4:-57150853 | None:intergenic |
| TCTTGGACATGGCTCTTTGG+TGG | 0.506179 | 3.4:+57150636 | MS.gene04381:CDS |
| ACTCCATCATCCATGGCTAA+AGG | 0.511990 | 3.4:+57149705 | None:intergenic |
| TGTGGTCGAGGAGAAGCTAA+TGG | 0.512745 | 3.4:-57150841 | None:intergenic |
| GCCAAAAGATGCTAGAGCTC+AGG | 0.513948 | 3.4:+57151540 | MS.gene04381:CDS |
| CCAGCTTACTATCTACTGTA+TGG | 0.515143 | 3.4:-57151621 | None:intergenic |
| GGTGAGATTTGGTTGGAAAA+GGG | 0.515702 | 3.4:+57150586 | MS.gene04381:CDS |
| AATGGTTTCTATCTATCGGC+GGG | 0.522564 | 3.4:+57151872 | MS.gene04381:CDS |
| GAGTATGTGATTCTGCAGAT+TGG | 0.526064 | 3.4:+57151803 | MS.gene04381:CDS |
| TCAGTAGTCTTTATCGACAC+TGG | 0.534043 | 3.4:-57150526 | None:intergenic |
| TGTCTCCTAGTAAACTTACT+TGG | 0.535374 | 3.4:-57150484 | None:intergenic |
| GTTTATTGGAAAGAAATCAA+TGG | 0.546197 | 3.4:+57150565 | MS.gene04381:CDS |
| GTTTCTATCTATCGGCGGGT+TGG | 0.546695 | 3.4:+57151876 | MS.gene04381:CDS |
| TCCTCCAAACTAATCTTCAA+AGG | 0.552905 | 3.4:+57149763 | MS.gene04381:CDS |
| AAATATGTGTACATCAAACC+TGG | 0.553885 | 3.4:-57150680 | None:intergenic |
| AGCGAAAGTGAACTGCAACC+AGG | 0.561940 | 3.4:+57151911 | MS.gene04381:CDS |
| TCAAAGACACAAACATCTCC+TGG | 0.563620 | 3.4:-57151929 | None:intergenic |
| TGAATGGCTTAATCGGAAGA+AGG | 0.573439 | 3.4:+57150804 | MS.gene04381:CDS |
| AAATGGTTTCTATCTATCGG+CGG | 0.576380 | 3.4:+57151871 | MS.gene04381:CDS |
| CCATACAGTAGATAGTAAGC+TGG | 0.603183 | 3.4:+57151621 | MS.gene04381:CDS |
| TTACTATCTACTGTATGGTG+AGG | 0.604910 | 3.4:-57151616 | None:intergenic |
| AGGAGTTATTGAGAACAAAG+AGG | 0.607683 | 3.4:+57151781 | MS.gene04381:CDS |
| AGTAAGTTTACTAGGAGACA+TGG | 0.620165 | 3.4:+57150487 | MS.gene04381:CDS |
| GTGTCGATAAAGACTACTGA+TGG | 0.628548 | 3.4:+57150529 | MS.gene04381:CDS |
| TTTACTAGGAGACATGGAGT+TGG | 0.629451 | 3.4:+57150493 | MS.gene04381:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.4:+57150625 | MS.gene04381:CDS |
| CATATTTGACCTGAATGCAG+TGG | 0.638810 | 3.4:+57150696 | MS.gene04381:CDS |
| ATCGGAAGAAGGCTAGACAA+AGG | 0.662228 | 3.4:+57150815 | MS.gene04381:CDS |
| GAAATTGATCTGTTCTAACG+AGG | 0.726190 | 3.4:+57151844 | MS.gene04381:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGCAAATAAAAATAATT+TGG | - | chr3.4:57151277-57151296 | None:intergenic | 10.0% |
| !! | ATATATTATAGTGATTGATA+AGG | + | chr3.4:57151722-57151741 | MS.gene04381:intron | 15.0% |
| !! | CTTAAGTAAATATTATTGAT+AGG | - | chr3.4:57149801-57149820 | None:intergenic | 15.0% |
| !! | TATATATGTTAGTAGAAATT+TGG | + | chr3.4:57151130-57151149 | MS.gene04381:intron | 15.0% |
| !!! | AAAAATAATTTTTGGTTGAA+GGG | - | chr3.4:57151043-57151062 | None:intergenic | 15.0% |
| !!! | AAACTTTACATTTAAAATGA+AGG | + | chr3.4:57150979-57150998 | MS.gene04381:intron | 15.0% |
| !!! | AACTTTACATTTAAAATGAA+GGG | + | chr3.4:57150980-57150999 | MS.gene04381:intron | 15.0% |
| !!! | GAAGAATGAAAAATAATTTT+TGG | - | chr3.4:57151051-57151070 | None:intergenic | 15.0% |
| !!! | GATGCTATTTATTTAATAAA+AGG | + | chr3.4:57151384-57151403 | MS.gene04381:intron | 15.0% |
| !!! | TATTTTCTGTTTACAATATT+AGG | + | chr3.4:57149882-57149901 | MS.gene04381:intron | 15.0% |
| !! | AAAACATTAGAGAACATATT+TGG | - | chr3.4:57151456-57151475 | None:intergenic | 20.0% |
| !! | AAATACCAAATAAGTTTACT+AGG | + | chr3.4:57150069-57150088 | MS.gene04381:intron | 20.0% |
| !! | AAATAGATTATGATTCTTCA+TGG | + | chr3.4:57150312-57150331 | MS.gene04381:intron | 20.0% |
| !! | AATAGATTATGATTCTTCAT+GGG | + | chr3.4:57150313-57150332 | MS.gene04381:intron | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | + | chr3.4:57150155-57150174 | MS.gene04381:intron | 20.0% |
| !! | TAAAAATGGTTTCTATCTAT+CGG | + | chr3.4:57151868-57151887 | MS.gene04381:CDS | 20.0% |
| !! | TTTACAAGAATTGTGAAAAA+AGG | - | chr3.4:57151595-57151614 | None:intergenic | 20.0% |
| !!! | AATCTTTTAGTCCAAATTAT+TGG | - | chr3.4:57151097-57151116 | None:intergenic | 20.0% |
| !!! | GAAAAATAATTTTTGGTTGA+AGG | - | chr3.4:57151044-57151063 | None:intergenic | 20.0% |
| !!! | TAGCACAAGAAATTTTATTA+TGG | + | chr3.4:57149932-57149951 | MS.gene04381:intron | 20.0% |
| !!! | TTTTCTTTCATTATGCATAA+TGG | + | chr3.4:57150898-57150917 | MS.gene04381:intron | 20.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3.4:57150165-57150184 | MS.gene04381:intron | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | + | chr3.4:57151518-57151537 | MS.gene04381:CDS | 25.0% |
| ! | AAAGTTCATGTCTTCAAAAA+AGG | + | chr3.4:57151980-57151999 | MS.gene04381:CDS | 25.0% |
| ! | AAATACCAAGTAAGTTTACT+AGG | + | chr3.4:57150479-57150498 | MS.gene04381:CDS | 25.0% |
| ! | AAGAATTGTGAAAAAAGGAT+TGG | - | chr3.4:57151590-57151609 | None:intergenic | 25.0% |
| ! | AAGTTCATGTCTTCAAAAAA+GGG | + | chr3.4:57151981-57152000 | MS.gene04381:CDS | 25.0% |
| ! | ACATAAGAAAGTTAAAGGTT+TGG | + | chr3.4:57150861-57150880 | MS.gene04381:intron | 25.0% |
| ! | GTATTTATACATAGAATTGC+AGG | - | chr3.4:57151680-57151699 | None:intergenic | 25.0% |
| ! | GTTTATTGGAAAGAAATCAA+TGG | + | chr3.4:57150565-57150584 | MS.gene04381:CDS | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | - | chr3.4:57150045-57150064 | None:intergenic | 25.0% |
| ! | TATGTAACTGCAGATTTAAA+AGG | + | chr3.4:57151761-57151780 | MS.gene04381:CDS | 25.0% |
| ! | TATGTGTACATCAAACTTAT+TGG | - | chr3.4:57150273-57150292 | None:intergenic | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3.4:57150619-57150638 | MS.gene04381:CDS | 25.0% |
| !! | AAACCTTTAACTTTCTTATG+TGG | - | chr3.4:57150862-57150881 | None:intergenic | 25.0% |
| !! | AAATTATTGGTTGAGTCTTT+GGG | - | chr3.4:57151084-57151103 | None:intergenic | 25.0% |
| !! | ATTGCAGAATATATTTTGCA+CGG | - | chr3.4:57151325-57151344 | None:intergenic | 25.0% |
| AAATATGTGTACATCAAACC+TGG | - | chr3.4:57150683-57150702 | None:intergenic | 30.0% | |
| AAGAAATCAATGGTGAGATT+TGG | + | chr3.4:57150575-57150594 | MS.gene04381:CDS | 30.0% | |
| AATAAGTTTACTAGGAGACA+TGG | + | chr3.4:57150077-57150096 | MS.gene04381:intron | 30.0% | |
| ACATCAATTACCATCAAAGT+AGG | - | chr3.4:57151217-57151236 | None:intergenic | 30.0% | |
| AGATGAAACTGCTTGTAATT+TGG | + | chr3.4:57151244-57151263 | MS.gene04381:intron | 30.0% | |
| CAAAGACTCAACCAATAATT+TGG | + | chr3.4:57151083-57151102 | MS.gene04381:intron | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3.4:57150141-57150160 | MS.gene04381:intron | 30.0% | |
| TATACATAGAATTGCAGGAA+TGG | - | chr3.4:57151675-57151694 | None:intergenic | 30.0% | |
| TCTTAGATGAATGGCTTAAT+CGG | + | chr3.4:57150797-57150816 | MS.gene04381:CDS | 30.0% | |
| TGTCTCCTAGTAAACTTATT+TGG | - | chr3.4:57150077-57150096 | None:intergenic | 30.0% | |
| TTGAATATAAAGGAACTTCC+AGG | + | chr3.4:57150252-57150271 | MS.gene04381:intron | 30.0% | |
| TTGATGTACACATATTTGAC+CGG | + | chr3.4:57150279-57150298 | MS.gene04381:intron | 30.0% | |
| TTGCTTAACTATCTTCTAGA+AGG | + | chr3.4:57150398-57150417 | MS.gene04381:intron | 30.0% | |
| TTTACCGAAAATTACTCTCT+TGG | + | chr3.4:57150209-57150228 | MS.gene04381:intron | 30.0% | |
| ! | ACCTTTTGCTTAGTGATTAA+AGG | + | chr3.4:57150436-57150455 | MS.gene04381:intron | 30.0% |
| ! | ATGTCCAAGAGAGTAATTTT+CGG | - | chr3.4:57150216-57150235 | None:intergenic | 30.0% |
| ! | CAAATTATTGGTTGAGTCTT+TGG | - | chr3.4:57151085-57151104 | None:intergenic | 30.0% |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3.4:57149770-57149789 | None:intergenic | 30.0% |
| ! | CCTTTTGCTTAGTGATTAAA+GGG | + | chr3.4:57150437-57150456 | MS.gene04381:intron | 30.0% |
| ! | CTTTTGCTTAGTGATTAAAG+GGG | + | chr3.4:57150438-57150457 | MS.gene04381:intron | 30.0% |
| ! | TCATGAATCTTGATGTTTTC+AGG | - | chr3.4:57151421-57151440 | None:intergenic | 30.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | - | chr3.4:57149744-57149763 | None:intergenic | 30.0% |
| !! | GGTTAATAACACTTGTTATG+TGG | + | chr3.4:57151001-57151020 | MS.gene04381:intron | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3.4:57150242-57150261 | MS.gene04381:intron | 30.0% |
| AAATGGTTTCTATCTATCGG+CGG | + | chr3.4:57151871-57151890 | MS.gene04381:CDS | 35.0% | |
| AATCTATTTCCACTGCATTC+AGG | - | chr3.4:57150301-57150320 | None:intergenic | 35.0% | |
| AATCTATTTCCACTGCATTC+CGG | - | chr3.4:57150301-57150320 | None:intergenic | 35.0% | |
| AGGAGTTATTGAGAACAAAG+AGG | + | chr3.4:57151781-57151800 | MS.gene04381:CDS | 35.0% | |
| AGTAAGTTTACTAGGAGACA+TGG | + | chr3.4:57150487-57150506 | MS.gene04381:CDS | 35.0% | |
| AGTATGTGATTCTGCAGATT+GGG | + | chr3.4:57151804-57151823 | MS.gene04381:CDS | 35.0% | |
| CACTTGAGATCTTAGATGAA+TGG | + | chr3.4:57150788-57150807 | MS.gene04381:CDS | 35.0% | |
| CCCTTTAATCACTAAGCAAA+AGG | - | chr3.4:57150440-57150459 | None:intergenic | 35.0% | |
| CGACCACATAAGAAAGTTAA+AGG | + | chr3.4:57150856-57150875 | MS.gene04381:CDS | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3.4:57150215-57150234 | MS.gene04381:intron | 35.0% | |
| GAAATTGATCTGTTCTAACG+AGG | + | chr3.4:57151844-57151863 | MS.gene04381:CDS | 35.0% | |
| TAGTGATGAACATGAATCAG+TGG | + | chr3.4:57150370-57150389 | MS.gene04381:intron | 35.0% | |
| TATATTGCACACATATACGC+AGG | + | chr3.4:57151475-57151494 | MS.gene04381:intron | 35.0% | |
| TCCTCCAAACTAATCTTCAA+AGG | + | chr3.4:57149763-57149782 | MS.gene04381:CDS | 35.0% | |
| TGTCTCCTAGTAAACTTACT+TGG | - | chr3.4:57150487-57150506 | None:intergenic | 35.0% | |
| TGTTCTAACGAGGCTAAAAA+TGG | + | chr3.4:57151854-57151873 | MS.gene04381:CDS | 35.0% | |
| TTAACTTTCTTATGTGGTCG+AGG | - | chr3.4:57150856-57150875 | None:intergenic | 35.0% | |
| TTACTATCTACTGTATGGTG+AGG | - | chr3.4:57151619-57151638 | None:intergenic | 35.0% | |
| ! | AATCAATGGTGAGATTTGGT+TGG | + | chr3.4:57150169-57150188 | MS.gene04381:intron | 35.0% |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | + | chr3.4:57150026-57150045 | MS.gene04381:intron | 35.0% |
| ! | CCTTTTTCTTAGTGACCAAA+GGG | + | chr3.4:57150027-57150046 | MS.gene04381:intron | 35.0% |
| ! | CTTTTTCTTAGTGACCAAAG+GGG | + | chr3.4:57150028-57150047 | MS.gene04381:intron | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+CGG | + | chr3.4:57150180-57150199 | MS.gene04381:intron | 35.0% |
| !! | GATGATTTTGAAGAAACGGA+TGG | - | chr3.4:57149745-57149764 | None:intergenic | 35.0% |
| !! | GGAGGATGATTTTGAAGAAA+CGG | - | chr3.4:57149749-57149768 | None:intergenic | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3.4:57150176-57150195 | MS.gene04381:intron | 35.0% |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | - | chr3.4:57149767-57149786 | None:intergenic | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3.4:57150175-57150194 | MS.gene04381:intron | 35.0% |
| AATGGTTTCTATCTATCGGC+GGG | + | chr3.4:57151872-57151891 | MS.gene04381:CDS | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3.4:57150137-57150156 | None:intergenic | 40.0% | |
| AGACTACTGATGGCACTAAA+TGG | + | chr3.4:57150539-57150558 | MS.gene04381:CDS | 40.0% | |
| CATATTTGACCTGAATGCAG+TGG | + | chr3.4:57150696-57150715 | MS.gene04381:CDS | 40.0% | |
| CCAGCTTACTATCTACTGTA+TGG | - | chr3.4:57151624-57151643 | None:intergenic | 40.0% | |
| CCATACAGTAGATAGTAAGC+TGG | + | chr3.4:57151621-57151640 | MS.gene04381:CDS | 40.0% | |
| CCCTTTGGTCACTAAGAAAA+AGG | - | chr3.4:57150030-57150049 | None:intergenic | 40.0% | |
| GAGTATGTGATTCTGCAGAT+TGG | + | chr3.4:57151803-57151822 | MS.gene04381:CDS | 40.0% | |
| TCAAAGACACAAACATCTCC+TGG | - | chr3.4:57151932-57151951 | None:intergenic | 40.0% | |
| TCAGTAGTCTTTATCGACAC+TGG | - | chr3.4:57150529-57150548 | None:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | + | chr3.4:57150804-57150823 | MS.gene04381:CDS | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | chr3.4:57151816-57151835 | MS.gene04381:CDS | 40.0% | |
| TTCACTTTCGCTTGCAAACA+AGG | - | chr3.4:57151903-57151922 | None:intergenic | 40.0% | |
| TTTACTAGGAGACATGGAGT+TGG | + | chr3.4:57150083-57150102 | MS.gene04381:intron | 40.0% | |
| ! | AGATTTGGTTGGAAAAGGGT+TGG | + | chr3.4:57150590-57150609 | MS.gene04381:CDS | 40.0% |
| ! | GGTGAGATTTGGTTGGAAAA+GGG | + | chr3.4:57150586-57150605 | MS.gene04381:CDS | 40.0% |
| ! | GTGTCGATAAAGACTACTGA+TGG | + | chr3.4:57150529-57150548 | MS.gene04381:CDS | 40.0% |
| ! | GTGTTGATAAAGACTCCTGA+TGG | + | chr3.4:57150119-57150138 | MS.gene04381:intron | 40.0% |
| ! | TGGTGAGATTTGGTTGGAAA+AGG | + | chr3.4:57150585-57150604 | MS.gene04381:CDS | 40.0% |
| !! | CACTTGTTATGTGGCAACTT+TGG | + | chr3.4:57151010-57151029 | MS.gene04381:intron | 40.0% |
| !! | TTTTGAAGAAACGGATGGGA+AGG | - | chr3.4:57149740-57149759 | None:intergenic | 40.0% |
| AATTGCGCTGCCTACTTTGA+TGG | + | chr3.4:57151204-57151223 | MS.gene04381:intron | 45.0% | |
| AGACTCCTGATGGCACTAAA+TGG | + | chr3.4:57150129-57150148 | MS.gene04381:intron | 45.0% | |
| ATCAAAGTAGGCAGCGCAAT+TGG | - | chr3.4:57151205-57151224 | None:intergenic | 45.0% | |
| ATCGGAAGAAGGCTAGACAA+AGG | + | chr3.4:57150815-57150834 | MS.gene04381:CDS | 45.0% | |
| CATATTTGACCGGAATGCAG+TGG | + | chr3.4:57150289-57150308 | MS.gene04381:intron | 45.0% | |
| TTGCATGTGTGATGTGTACG+TGG | - | chr3.4:57149840-57149859 | None:intergenic | 45.0% | |
| !! | TCCTGAGCTCTAGCATCTTT+TGG | - | chr3.4:57151544-57151563 | None:intergenic | 45.0% |
| AGCGAAAGTGAACTGCAACC+AGG | + | chr3.4:57151911-57151930 | MS.gene04381:CDS | 50.0% | |
| CTCTCTTGGACATGGCTCTT+TGG | + | chr3.4:57150633-57150652 | MS.gene04381:CDS | 50.0% | |
| CTCTCTTGGACATGGCTGTT+TGG | + | chr3.4:57150223-57150242 | MS.gene04381:intron | 50.0% | |
| GCCAAAAGATGCTAGAGCTC+AGG | + | chr3.4:57151540-57151559 | MS.gene04381:CDS | 50.0% | |
| GGCAGCGCAATTGGTAAACT+AGG | - | chr3.4:57151196-57151215 | None:intergenic | 50.0% | |
| GTTTCTATCTATCGGCGGGT+TGG | + | chr3.4:57151876-57151895 | MS.gene04381:CDS | 50.0% | |
| TCTTGGACATGGCTCTTTGG+TGG | + | chr3.4:57150636-57150655 | MS.gene04381:CDS | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | + | chr3.4:57150226-57150245 | MS.gene04381:intron | 50.0% | |
| TGTGGTCGAGGAGAAGCTAA+TGG | - | chr3.4:57150844-57150863 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 57149717 | 57152024 | 57149717 | ID=MS.gene04381 |
| chr3.4 | mRNA | 57149717 | 57152024 | 57149717 | ID=MS.gene04381.t1;Parent=MS.gene04381 |
| chr3.4 | exon | 57149717 | 57149788 | 57149717 | ID=MS.gene04381.t1.exon1;Parent=MS.gene04381.t1 |
| chr3.4 | CDS | 57149717 | 57149788 | 57149717 | ID=cds.MS.gene04381.t1;Parent=MS.gene04381.t1 |
| chr3.4 | exon | 57150478 | 57150877 | 57150478 | ID=MS.gene04381.t1.exon2;Parent=MS.gene04381.t1 |
| chr3.4 | CDS | 57150478 | 57150877 | 57150478 | ID=cds.MS.gene04381.t1;Parent=MS.gene04381.t1 |
| chr3.4 | exon | 57151497 | 57151642 | 57151497 | ID=MS.gene04381.t1.exon3;Parent=MS.gene04381.t1 |
| chr3.4 | CDS | 57151497 | 57151642 | 57151497 | ID=cds.MS.gene04381.t1;Parent=MS.gene04381.t1 |
| chr3.4 | exon | 57151761 | 57152024 | 57151761 | ID=MS.gene04381.t1.exon4;Parent=MS.gene04381.t1 |
| chr3.4 | CDS | 57151761 | 57152024 | 57151761 | ID=cds.MS.gene04381.t1;Parent=MS.gene04381.t1 |
| Gene Sequence |
| Protein sequence |
