Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043876.t1 | XP_003616032.1 | 82.5 | 171 | 30 | 0 | 1 | 171 | 67 | 237 | 7.20E-68 | 267.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043876.t1 | O22873 | 60.8 | 186 | 50 | 4 | 2 | 171 | 48 | 226 | 7.8e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043876.t1 | G7K0T5 | 82.5 | 171 | 30 | 0 | 1 | 171 | 67 | 237 | 5.2e-68 | 267.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043876.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043876.t1 | MTR_5g075390 | 86.550 | 171 | 23 | 0 | 1 | 171 | 67 | 237 | 1.10e-99 | 295 |
| MS.gene043876.t1 | MTR_5g075390 | 79.487 | 78 | 16 | 0 | 171 | 248 | 90 | 167 | 7.11e-38 | 136 |
| MS.gene043876.t1 | MTR_3g467120 | 60.465 | 215 | 48 | 5 | 1 | 180 | 54 | 266 | 7.55e-74 | 229 |
| MS.gene043876.t1 | MTR_3g467120 | 41.818 | 110 | 30 | 4 | 171 | 248 | 78 | 185 | 3.97e-15 | 74.3 |
| MS.gene043876.t1 | MTR_3g094020 | 61.905 | 147 | 49 | 1 | 25 | 171 | 47 | 186 | 1.32e-50 | 168 |
| MS.gene043876.t1 | MTR_2g099050 | 48.705 | 193 | 55 | 4 | 23 | 171 | 107 | 299 | 4.33e-42 | 149 |
| MS.gene043876.t1 | MTR_6g034945 | 59.231 | 130 | 50 | 3 | 45 | 172 | 102 | 230 | 7.65e-37 | 132 |
| MS.gene043876.t1 | MTR_4g072090 | 68.367 | 98 | 31 | 0 | 78 | 175 | 345 | 442 | 3.50e-34 | 128 |
| MS.gene043876.t1 | MTR_4g072090 | 70.213 | 94 | 28 | 0 | 78 | 171 | 345 | 438 | 8.49e-34 | 127 |
| MS.gene043876.t1 | MTR_1g023690 | 56.897 | 116 | 50 | 0 | 78 | 193 | 372 | 487 | 1.14e-20 | 90.9 |
| MS.gene043876.t1 | MTR_1g099030 | 38.017 | 121 | 70 | 3 | 37 | 157 | 73 | 188 | 1.71e-13 | 68.9 |
| MS.gene043876.t1 | MTR_2g090900 | 46.250 | 80 | 43 | 0 | 92 | 171 | 190 | 269 | 8.44e-13 | 67.4 |
| MS.gene043876.t1 | MTR_2g090900 | 46.250 | 80 | 43 | 0 | 92 | 171 | 190 | 269 | 9.24e-13 | 67.4 |
| MS.gene043876.t1 | MTR_4g079500 | 45.946 | 74 | 40 | 0 | 92 | 165 | 193 | 266 | 1.76e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043876.t1 | AT2G40620 | 60.215 | 186 | 51 | 4 | 2 | 171 | 48 | 226 | 2.81e-60 | 194 |
| MS.gene043876.t1 | AT2G40620 | 42.268 | 97 | 33 | 3 | 171 | 248 | 64 | 156 | 2.08e-12 | 66.6 |
| MS.gene043876.t1 | AT1G06850 | 55.696 | 158 | 55 | 3 | 28 | 171 | 70 | 226 | 2.69e-48 | 162 |
| MS.gene043876.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 23 | 172 | 94 | 280 | 8.85e-43 | 149 |
| MS.gene043876.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 23 | 172 | 94 | 280 | 1.38e-42 | 149 |
| MS.gene043876.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 23 | 172 | 94 | 280 | 1.38e-42 | 149 |
| MS.gene043876.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 23 | 172 | 94 | 280 | 1.38e-42 | 149 |
| MS.gene043876.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 23 | 172 | 94 | 280 | 1.38e-42 | 149 |
| MS.gene043876.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 23 | 172 | 94 | 280 | 1.38e-42 | 149 |
| MS.gene043876.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 23 | 172 | 94 | 280 | 1.38e-42 | 149 |
| MS.gene043876.t1 | AT1G06070 | 47.514 | 181 | 63 | 3 | 23 | 171 | 108 | 288 | 6.99e-40 | 142 |
| MS.gene043876.t1 | AT1G06850 | 51.111 | 135 | 51 | 3 | 28 | 148 | 70 | 203 | 1.13e-35 | 127 |
| MS.gene043876.t1 | AT4G38900 | 71.277 | 94 | 27 | 0 | 78 | 171 | 379 | 472 | 1.75e-33 | 127 |
| MS.gene043876.t1 | AT4G38900 | 71.277 | 94 | 27 | 0 | 78 | 171 | 379 | 472 | 1.75e-33 | 127 |
| MS.gene043876.t1 | AT1G43700 | 68.041 | 97 | 29 | 1 | 77 | 171 | 176 | 272 | 6.23e-33 | 122 |
| MS.gene043876.t1 | AT4G38900 | 67.000 | 100 | 27 | 1 | 78 | 171 | 379 | 478 | 3.96e-31 | 120 |
| MS.gene043876.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 78 | 171 | 355 | 448 | 1.97e-30 | 118 |
| MS.gene043876.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 78 | 171 | 355 | 448 | 4.19e-30 | 117 |
| MS.gene043876.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 78 | 171 | 355 | 448 | 4.19e-30 | 117 |
| MS.gene043876.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 78 | 171 | 355 | 448 | 5.22e-30 | 117 |
| MS.gene043876.t1 | AT3G58120 | 42.857 | 84 | 48 | 0 | 93 | 176 | 202 | 285 | 3.76e-13 | 68.2 |
| MS.gene043876.t1 | AT2G42380 | 45.000 | 80 | 44 | 0 | 92 | 171 | 185 | 264 | 4.79e-13 | 67.4 |
| MS.gene043876.t1 | AT2G42380 | 47.297 | 74 | 39 | 0 | 92 | 165 | 185 | 258 | 1.33e-12 | 66.6 |
| MS.gene043876.t1 | AT3G58120 | 47.945 | 73 | 38 | 0 | 93 | 165 | 202 | 274 | 1.55e-12 | 66.6 |
| MS.gene043876.t1 | AT2G12900 | 35.000 | 100 | 64 | 1 | 85 | 184 | 109 | 207 | 6.28e-12 | 64.3 |
| MS.gene043876.t1 | AT2G12940 | 35.227 | 88 | 56 | 1 | 84 | 171 | 140 | 226 | 1.55e-11 | 63.5 |
Find 0 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGGTAAAATAAATTAATA+AGG | - | 37287:6739-6758 | MS.gene043876:intron | 10.0% |
| !! | TTATACAAAAAGATTCTTAA+TGG | + | 37287:7862-7881 | MS.gene043876:intergenic | 15.0% |
| !!! | ATTAGTTAATTTTTCAATGA+TGG | - | 37287:6625-6644 | MS.gene043876:CDS | 15.0% |
| !!! | TCATATTTTTTAGCTATAAA+TGG | + | 37287:8555-8574 | MS.gene043876:intergenic | 15.0% |
| !!! | TCTAGAACATTTTATATAAA+AGG | + | 37287:8616-8635 | MS.gene043876:intergenic | 15.0% |
| !!! | TGATTTTCTTTTATTAGTTT+AGG | - | 37287:6696-6715 | MS.gene043876:intron | 15.0% |
| !!! | TTAGTTAATTTTTCAATGAT+GGG | - | 37287:6626-6645 | MS.gene043876:CDS | 15.0% |
| !!! | TTGAAATTTTTGAATAGTTT+GGG | - | 37287:7511-7530 | MS.gene043876:intron | 15.0% |
| !!! | TTTTTTTTTATATAGTGATG+AGG | - | 37287:7773-7792 | MS.gene043876:intron | 15.0% |
| !! | AATTTATGATTAGAGATTAG+AGG | - | 37287:7836-7855 | MS.gene043876:intron | 20.0% |
| !! | ATCTTTAACATATTGTAAGA+AGG | + | 37287:8904-8923 | MS.gene043876:intergenic | 20.0% |
| !! | TCTTTAACATATTGTAAGAA+GGG | + | 37287:8903-8922 | MS.gene043876:intergenic | 20.0% |
| !!! | AACCAAGAAAAAACATTTTT+AGG | - | 37287:7306-7325 | MS.gene043876:intron | 20.0% |
| !!! | AAGAAAAAACATTTTTAGGT+AGG | - | 37287:7310-7329 | MS.gene043876:intron | 20.0% |
| !!! | AGAAAAAACATTTTTAGGTA+GGG | - | 37287:7311-7330 | MS.gene043876:intron | 20.0% |
| !!! | CTTCTTAGATTTAAACTTTT+GGG | - | 37287:8112-8131 | MS.gene043876:intron | 20.0% |
| !!! | GTTGAAATTTTTGAATAGTT+TGG | - | 37287:7510-7529 | MS.gene043876:intron | 20.0% |
| !!! | GTTTTGTTTATTGGATTTAT+CGG | - | 37287:8464-8483 | MS.gene043876:intron | 20.0% |
| !!! | TACCTAAAAATGTTTTTTCT+TGG | + | 37287:7311-7330 | MS.gene043876:intergenic | 20.0% |
| !!! | TAGCTAAAAAATATGACTTT+TGG | - | 37287:8559-8578 | MS.gene043876:intron | 20.0% |
| !!! | TATGTTGAGTTTTTGTTAAT+TGG | - | 37287:6657-6676 | MS.gene043876:intron | 20.0% |
| !!! | TTCTTAGATTTAAACTTTTG+GGG | - | 37287:8113-8132 | MS.gene043876:intron | 20.0% |
| !!! | TTGTTTTGATAATTTTTGTG+TGG | - | 37287:7603-7622 | MS.gene043876:intron | 20.0% |
| ! | AATAACTGATAAGCTTATAG+CGG | - | 37287:6762-6781 | MS.gene043876:intron | 25.0% |
| ! | ATAAATGGAACAAGGATATA+TGG | + | 37287:8540-8559 | MS.gene043876:intergenic | 25.0% |
| ! | CGATTCCAATTATAAACAAA+AGG | - | 37287:7267-7286 | MS.gene043876:intron | 25.0% |
| ! | CGTTAAAAAATTCAGCAATT+GGG | + | 37287:7438-7457 | MS.gene043876:intergenic | 25.0% |
| ! | CTTTAACATATTGTAAGAAG+GGG | + | 37287:8902-8921 | MS.gene043876:intergenic | 25.0% |
| ! | TACTGTACATTTAATCACTT+TGG | - | 37287:8640-8659 | MS.gene043876:intron | 25.0% |
| ! | TCGTTAAAAAATTCAGCAAT+TGG | + | 37287:7439-7458 | MS.gene043876:intergenic | 25.0% |
| ! | TGCTAGATTTAAACAAATGA+GGG | + | 37287:7188-7207 | MS.gene043876:intergenic | 25.0% |
| ! | TGTTTATAATTGGAATCGAT+TGG | + | 37287:7265-7284 | MS.gene043876:intergenic | 25.0% |
| ! | TGTTTGTGAATAATTCATCA+TGG | - | 37287:8699-8718 | MS.gene043876:intron | 25.0% |
| ! | TTGCTAGATTTAAACAAATG+AGG | + | 37287:7189-7208 | MS.gene043876:intergenic | 25.0% |
| !! | ACTAGCTTATAGATATGATA+TGG | - | 37287:6866-6885 | MS.gene043876:intron | 25.0% |
| !! | AGTTTAGGCAATTTAAAACA+AGG | - | 37287:6711-6730 | MS.gene043876:intron | 25.0% |
| !! | ATTTAATCACTTTGGTGATT+TGG | - | 37287:8648-8667 | MS.gene043876:intron | 25.0% |
| !! | ATTTCCAAGACCAATTTTAA+AGG | + | 37287:7236-7255 | MS.gene043876:intergenic | 25.0% |
| !! | GCTTCTTAGATTTAAACTTT+TGG | - | 37287:8111-8130 | MS.gene043876:intron | 25.0% |
| !! | TCTTAGATTTAAACTTTTGG+GGG | - | 37287:8114-8133 | MS.gene043876:intron | 25.0% |
| !! | TTTAATCACTTTGGTGATTT+GGG | - | 37287:8649-8668 | MS.gene043876:intron | 25.0% |
| !! | TTTCCAAGACCAATTTTAAA+GGG | + | 37287:7235-7254 | MS.gene043876:intergenic | 25.0% |
| !!! | AAGCTCCTTTTGTTTATAAT+TGG | + | 37287:7275-7294 | MS.gene043876:intergenic | 25.0% |
| !!! | AGTAACTCTGTTTTGTTTAT+TGG | - | 37287:8455-8474 | MS.gene043876:intron | 25.0% |
| !!! | TTTTAGCTATAAATGGAACA+AGG | + | 37287:8548-8567 | MS.gene043876:intergenic | 25.0% |
| AAGCTCAAATACGTCAAATA+TGG | - | 37287:7924-7943 | MS.gene043876:intron | 30.0% | |
| AAGTTTAAATCTAAGAAGCC+CGG | + | 37287:8110-8129 | MS.gene043876:intergenic | 30.0% | |
| ACTCATCTCAATTATTTGAC+TGG | - | 37287:7643-7662 | MS.gene043876:intron | 30.0% | |
| CACTCTCATACTTAAATTTG+TGG | - | 37287:8736-8755 | MS.gene043876:intron | 30.0% | |
| CGTCAAATATGGAAAAACAT+TGG | - | 37287:7935-7954 | MS.gene043876:intron | 30.0% | |
| CTAATTGAATTCGTAGTGTT+TGG | - | 37287:6827-6846 | MS.gene043876:intron | 30.0% | |
| CTCATCTCAATTATTTGACT+GGG | - | 37287:7644-7663 | MS.gene043876:intron | 30.0% | |
| GGCATAATAATTTGGTCATT+GGG | - | 37287:6459-6478 | MS.gene043876:CDS | 30.0% | |
| GTAAGTTCTATGAGTAATTG+CGG | - | 37287:7716-7735 | MS.gene043876:intron | 30.0% | |
| TCCATATTGTTCTATGTATC+CGG | - | 37287:8088-8107 | MS.gene043876:intron | 30.0% | |
| ! | AAAAACATTGGTGTTTGACA+TGG | - | 37287:7947-7966 | MS.gene043876:intron | 30.0% |
| ! | ACAATCTAGAATCACATAAG+AGG | + | 37287:7698-7717 | MS.gene043876:intergenic | 30.0% |
| ! | ATTTAAAACAAGGCTCTGTT+TGG | - | 37287:6721-6740 | MS.gene043876:intron | 30.0% |
| ! | CAATCTAGAATCACATAAGA+GGG | + | 37287:7697-7716 | MS.gene043876:intergenic | 30.0% |
| ! | CTAATTGATTTAGCACAACT+CGG | + | 37287:7072-7091 | MS.gene043876:intergenic | 30.0% |
| !! | AATTTTAAAGGGGTGATATG+AGG | + | 37287:7224-7243 | MS.gene043876:intergenic | 30.0% |
| !! | ATTTTAAAGGGGTGATATGA+GGG | + | 37287:7223-7242 | MS.gene043876:intergenic | 30.0% |
| !! | TCATATCACCCCTTTAAAAT+TGG | - | 37287:7223-7242 | MS.gene043876:intron | 30.0% |
| !! | TTCCAAGACCAATTTTAAAG+GGG | + | 37287:7234-7253 | MS.gene043876:intergenic | 30.0% |
| !!! | GGTCTTTTTTAAGTCAAATG+AGG | - | 37287:6955-6974 | MS.gene043876:intron | 30.0% |
| !!! | TTATTTTAGAGAGACACAAC+AGG | - | 37287:8794-8813 | MS.gene043876:intron | 30.0% |
| ATTATTTGACTGGGATGAGT+TGG | - | 37287:7653-7672 | MS.gene043876:intron | 35.0% | |
| CAACAAACACATCTTCATGA+TGG | - | 37287:8866-8885 | MS.gene043876:intron | 35.0% | |
| CCATATTGTTCTATGTATCC+GGG | - | 37287:8089-8108 | MS.gene043876:intron | 35.0% | |
| CGGCATAATAATTTGGTCAT+TGG | - | 37287:6458-6477 | MS.gene043876:CDS | 35.0% | |
| CGTCAAAAACAAGTCATCTT+CGG | + | 37287:6351-6370 | MS.gene043876:intergenic | 35.0% | |
| GAGACATCGGCATAATAATT+TGG | - | 37287:6451-6470 | MS.gene043876:CDS | 35.0% | |
| GATAAATGTCAACACAAACC+TGG | + | 37287:8397-8416 | MS.gene043876:intergenic | 35.0% | |
| TGACTTAAAAAAGACCCGTT+TGG | + | 37287:6951-6970 | MS.gene043876:intergenic | 35.0% | |
| TGCTCATTCAAAAGAGAGAA+AGG | - | 37287:8289-8308 | MS.gene043876:intron | 35.0% | |
| TTGATCCTAAATGTGCGAAA+AGG | - | 37287:6555-6574 | MS.gene043876:intron | 35.0% | |
| TTGTTGTGTGTTCAATCTGT+CGG | - | 37287:7037-7056 | MS.gene043876:intron | 35.0% | |
| ! | ACAAACCTTTTCGCACATTT+AGG | + | 37287:9147-9166 | MS.gene043876:intergenic | 35.0% |
| ! | ACACATTTGTTAGCGTATCT+TGG | - | 37287:8014-8033 | MS.gene043876:intron | 35.0% |
| ! | GTTTTTGACGTACATTGACA+TGG | - | 37287:6361-6380 | MS.gene043876:CDS | 35.0% |
| ! | TTTCGCACATTTAGGATCAA+CGG | + | 37287:6555-6574 | MS.gene043876:intergenic | 35.0% |
| !! | AAGTTTGTTGTGTGTGATTG+TGG | - | 37287:7561-7580 | MS.gene043876:intron | 35.0% |
| !! | TAGATTTAAACTTTTGGGGG+TGG | - | 37287:8117-8136 | MS.gene043876:intron | 35.0% |
| !!! | ACATTTTTAGGTAGGGAACT+AGG | - | 37287:7318-7337 | MS.gene043876:intron | 35.0% |
| AAACCTGGTATAGTGTCAGT+TGG | + | 37287:8382-8401 | None:intergenic | 40.0% | |
| AACCTGGTATAGTGTCAGTT+GGG | + | 37287:8381-8400 | None:intergenic | 40.0% | |
| AGAACGTCACAGTTACCAAA+CGG | - | 37287:6933-6952 | MS.gene043876:intron | 40.0% | |
| AGCCAGATACACGACAAAAT+AGG | + | 37287:7391-7410 | MS.gene043876:intergenic | 40.0% | |
| AGCTATGTCTCCTGATAAGT+TGG | - | 37287:6517-6536 | MS.gene043876:intron | 40.0% | |
| AGTTGTAGCATCAGTCTGTA+GGG | + | 37287:8351-8370 | MS.gene043876:intergenic | 40.0% | |
| CCAGATACACGACAAAATAG+GGG | + | 37287:7389-7408 | MS.gene043876:intergenic | 40.0% | |
| CCCGGATACATAGAACAATA+TGG | + | 37287:8092-8111 | MS.gene043876:intergenic | 40.0% | |
| CTAGAATCACATAAGAGGGT+TGG | + | 37287:7693-7712 | MS.gene043876:intergenic | 40.0% | |
| GAACAAGGATATATGGCTCA+AGG | + | 37287:8533-8552 | MS.gene043876:intergenic | 40.0% | |
| GAGACATCGGCACAATAATT+TGG | - | 37287:9035-9054 | MS.gene043876:CDS | 40.0% | |
| GCCAGATACACGACAAAATA+GGG | + | 37287:7390-7409 | MS.gene043876:intergenic | 40.0% | |
| GGCAACTAGTTCAAGATGAA+GGG | + | 37287:7368-7387 | MS.gene043876:intergenic | 40.0% | |
| GGCACAATAATTTGGTCGTT+GGG | - | 37287:9043-9062 | MS.gene043876:CDS | 40.0% | |
| GTATCTGGCTATGTGTTCAA+TGG | - | 37287:7401-7420 | MS.gene043876:intron | 40.0% | |
| GTTTACTCACACTGCAGAAA+CGG | + | 37287:7159-7178 | MS.gene043876:intergenic | 40.0% | |
| TACATTGACATGGACAGACT+TGG | - | 37287:6371-6390 | MS.gene043876:CDS | 40.0% | |
| TGTTTGGGGAGACTATAGAT+GGG | - | 37287:6489-6508 | MS.gene043876:CDS | 40.0% | |
| TTGTTTGGGGAGACTATAGA+TGG | - | 37287:6488-6507 | MS.gene043876:CDS | 40.0% | |
| ! | AACTCCACTAACAGCCATTT+TGG | - | 37287:7128-7147 | MS.gene043876:CDS | 40.0% |
| ! | ACGAACCTTTTCGCACATTT+AGG | + | 37287:6563-6582 | MS.gene043876:intergenic | 40.0% |
| ! | TCATTGGGTCGAGTTTGTTT+GGG | - | 37287:6474-6493 | MS.gene043876:CDS | 40.0% |
| !! | ATTTAAACTTTTGGGGGTGG+AGG | - | 37287:8120-8139 | MS.gene043876:intron | 40.0% |
| !! | CACCCCTTTAAAATTGGTCT+TGG | - | 37287:7229-7248 | MS.gene043876:intron | 40.0% |
| AGCTATGCCTCCTGATAAGT+TGG | - | 37287:9101-9120 | MS.gene043876:CDS | 45.0% | |
| CAAAGCTCAGCCAACTTATC+AGG | + | 37287:6530-6549 | MS.gene043876:intergenic | 45.0% | |
| CGGCACAATAATTTGGTCGT+TGG | - | 37287:9042-9061 | MS.gene043876:CDS | 45.0% | |
| GAACGTCACAGTTACCAAAC+GGG | - | 37287:6934-6953 | MS.gene043876:intron | 45.0% | |
| GAGTTGTAGCATCAGTCTGT+AGG | + | 37287:8352-8371 | MS.gene043876:intergenic | 45.0% | |
| GGGCAACTAGTTCAAGATGA+AGG | + | 37287:7369-7388 | MS.gene043876:intergenic | 45.0% | |
| GTGGAGGATAAAGTGAGAGA+GGG | - | 37287:8136-8155 | MS.gene043876:intron | 45.0% | |
| TGGAGGATAAAGTGAGAGAG+GGG | - | 37287:8137-8156 | MS.gene043876:intron | 45.0% | |
| TTTAGCACAACTCGGAGAGA+AGG | + | 37287:7064-7083 | MS.gene043876:intergenic | 45.0% | |
| ! | CATTGGGTCGAGTTTGTTTG+GGG | - | 37287:6475-6494 | MS.gene043876:CDS | 45.0% |
| ! | CCCCTATTTTGTCGTGTATC+TGG | - | 37287:7386-7405 | MS.gene043876:intron | 45.0% |
| ! | CTGATAAGTTGGCTGAGCTT+TGG | - | 37287:6528-6547 | MS.gene043876:intron | 45.0% |
| ! | GTCATTGGGTCGAGTTTGTT+TGG | - | 37287:6473-6492 | MS.gene043876:CDS | 45.0% |
| ! | GTTTGTTGCTCCATTGCTTG+CGG | + | 37287:8854-8873 | MS.gene043876:intergenic | 45.0% |
| !! | TCGTTGGGTTGAGTTCGTTT+GGG | - | 37287:9058-9077 | MS.gene043876:CDS | 45.0% |
| AGCTCAGCCAACTTATCAGG+AGG | + | 37287:6527-6546 | MS.gene043876:intergenic | 50.0% | |
| ATCAGGTGAGGTCGAGACAT+CGG | - | 37287:6438-6457 | MS.gene043876:CDS | 50.0% | |
| ATCCGGTGAGGTTGAGACAT+CGG | - | 37287:9022-9041 | MS.gene043876:CDS | 50.0% | |
| ATGGACAGACTTGGAGATGC+TGG | - | 37287:6380-6399 | MS.gene043876:CDS | 50.0% | |
| CAGAAACGGAGTGGCCAAAA+TGG | + | 37287:7145-7164 | MS.gene043876:intergenic | 50.0% | |
| CGAAGAGGCAGAGAAGAATC+CGG | - | 37287:9005-9024 | MS.gene043876:CDS | 50.0% | |
| CGTTTGGGGAGACTATGGAT+GGG | - | 37287:9073-9092 | MS.gene043876:CDS | 50.0% | |
| GAGTTCGTTTGGGGAGACTA+TGG | - | 37287:9068-9087 | MS.gene043876:CDS | 50.0% | |
| GGTGGAGGATAAAGTGAGAG+AGG | - | 37287:8135-8154 | MS.gene043876:intron | 50.0% | |
| GTGGCCAAAATGGCTGTTAG+TGG | + | 37287:7135-7154 | MS.gene043876:intergenic | 50.0% | |
| TCGTTTGGGGAGACTATGGA+TGG | - | 37287:9072-9091 | MS.gene043876:CDS | 50.0% | |
| TGATCTGCCGGTGAATGGAT+CGG | + | 37287:6300-6319 | MS.gene043876:intergenic | 50.0% | |
| TGCCCAACTGACACTATACC+AGG | - | 37287:8376-8395 | MS.gene043876:intron | 50.0% | |
| ! | ACTGCTAGCCTCGATGAGAT+CGG | - | 37287:6323-6342 | MS.gene043876:CDS | 50.0% |
| !! | CGTTGGGTTGAGTTCGTTTG+GGG | - | 37287:9059-9078 | MS.gene043876:CDS | 50.0% |
| !! | GCTAGCAGTTGATGATCTGC+CGG | + | 37287:6312-6331 | MS.gene043876:intergenic | 50.0% |
| !! | GTCGTTGGGTTGAGTTCGTT+TGG | - | 37287:9057-9076 | MS.gene043876:CDS | 50.0% |
| !! | GTTGATGATCTGCCGGTGAA+TGG | + | 37287:6305-6324 | MS.gene043876:intergenic | 50.0% |
| AGATCCGGGAGGAAACGAAG+GGG | - | 37287:6406-6425 | MS.gene043876:CDS | 55.0% | |
| AGGCAGAGAAGAATCCGGTG+AGG | - | 37287:9010-9029 | MS.gene043876:CDS | 55.0% | |
| CAGATCCGGGAGGAAACGAA+GGG | - | 37287:6405-6424 | MS.gene043876:CDS | 55.0% | |
| CGAAGGGGCAGAGAAGAATC+AGG | - | 37287:6421-6440 | MS.gene043876:CDS | 55.0% | |
| CTCACACTGCAGAAACGGAG+TGG | + | 37287:7154-7173 | MS.gene043876:intergenic | 55.0% | |
| CTTCGGATCCGATCTCATCG+AGG | + | 37287:6334-6353 | MS.gene043876:intergenic | 55.0% | |
| GGGCAGAGAAGAATCAGGTG+AGG | - | 37287:6426-6445 | MS.gene043876:CDS | 55.0% | |
| GTTGCTCCATTGCTTGCGGA+CGG | + | 37287:8850-8869 | MS.gene043876:intergenic | 55.0% | |
| TAAGCTCCGTCCGCAAGCAA+TGG | - | 37287:8841-8860 | MS.gene043876:intron | 55.0% | |
| TGCCGATGTCTCAACCTCAC+CGG | + | 37287:9027-9046 | MS.gene043876:intergenic | 55.0% | |
| TGGAGATGCTGGAGCAGATC+CGG | - | 37287:6391-6410 | MS.gene043876:CDS | 55.0% | |
| AGATCCGGGAGGAAGCGAAG+AGG | - | 37287:8990-9009 | MS.gene043876:CDS | 60.0% | |
| CTGCCGGTGAATGGATCGGA+CGG | + | 37287:6296-6315 | MS.gene043876:intergenic | 60.0% | |
| GCAGATCCGGGAGGAAACGA+AGG | - | 37287:6404-6423 | MS.gene043876:CDS | 60.0% | |
| GGAGATGCTGGAGCAGATCC+GGG | - | 37287:6392-6411 | MS.gene043876:CDS | 60.0% | |
| TCCCCGTCCGATCCATTCAC+CGG | - | 37287:6290-6309 | MS.gene043876:CDS | 60.0% | |
| TCTGCCCCTTCGTTTCCTCC+CGG | + | 37287:6413-6432 | MS.gene043876:intergenic | 60.0% | |
| TCTGCCTCTTCGCTTCCTCC+CGG | + | 37287:8997-9016 | MS.gene043876:intergenic | 60.0% | |
| TGAATGGATCGGACGGGGAG+AGG | + | 37287:6289-6308 | MS.gene043876:intergenic | 60.0% | |
| TGCCGGTGAATGGATCGGAC+GGG | + | 37287:6295-6314 | MS.gene043876:intergenic | 60.0% | |
| GATGCTGGAGCAGATCCGGG+AGG | - | 37287:6395-6414 | MS.gene043876:CDS | 65.0% | |
| GCCGGTGAATGGATCGGACG+GGG | + | 37287:6294-6313 | MS.gene043876:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 37287 | gene | 6281 | 9182 | 6281 | ID=MS.gene043876 |
| 37287 | mRNA | 6281 | 9182 | 6281 | ID=MS.gene043876.t1;Parent=MS.gene043876 |
| 37287 | exon | 8887 | 9182 | 8887 | ID=MS.gene043876.t1.exon1;Parent=MS.gene043876.t1 |
| 37287 | CDS | 8887 | 9182 | 8887 | ID=cds.MS.gene043876.t1;Parent=MS.gene043876.t1 |
| 37287 | exon | 7066 | 7198 | 7066 | ID=MS.gene043876.t1.exon2;Parent=MS.gene043876.t1 |
| 37287 | CDS | 7066 | 7198 | 7066 | ID=cds.MS.gene043876.t1;Parent=MS.gene043876.t1 |
| 37287 | exon | 6576 | 6660 | 6576 | ID=MS.gene043876.t1.exon3;Parent=MS.gene043876.t1 |
| 37287 | CDS | 6576 | 6660 | 6576 | ID=cds.MS.gene043876.t1;Parent=MS.gene043876.t1 |
| 37287 | exon | 6281 | 6525 | 6281 | ID=MS.gene043876.t1.exon4;Parent=MS.gene043876.t1 |
| 37287 | CDS | 6281 | 6525 | 6281 | ID=cds.MS.gene043876.t1;Parent=MS.gene043876.t1 |
| Gene Sequence |
| Protein sequence |
