AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04389

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04389.t1 MTR_3g461490 99.077 325 3 0 1 325 1 325 0.0 683
MS.gene04389.t1 MTR_6g009430 56.000 175 72 1 1 175 1 170 1.49e-65 210
MS.gene04389.t1 MTR_4g091490 70.543 129 37 1 1 128 1 129 9.78e-65 208
MS.gene04389.t1 MTR_3g074520 52.459 183 75 1 1 171 1 183 2.12e-63 204
MS.gene04389.t1 MTR_2g011660 68.992 129 39 1 1 128 1 129 3.07e-63 204
MS.gene04389.t1 MTR_7g011170 68.750 128 40 0 1 128 1 128 6.36e-62 199
MS.gene04389.t1 MTR_6g012690 59.211 152 62 0 1 152 1 152 7.16e-62 201
MS.gene04389.t1 MTR_4g082290 68.750 128 40 0 1 128 1 128 1.53e-60 199
MS.gene04389.t1 MTR_2g089620 65.672 134 45 1 1 133 1 134 1.87e-60 196
MS.gene04389.t1 MTR_4g478180 61.111 144 53 1 1 141 2 145 1.97e-60 197
MS.gene04389.t1 MTR_5g029840 50.251 199 80 4 1 182 1 197 2.99e-60 196
MS.gene04389.t1 MTR_4g073420 57.432 148 59 1 1 148 1 144 1.64e-59 192
MS.gene04389.t1 MTR_4g082230 67.188 128 42 0 1 128 1 128 3.33e-59 195
MS.gene04389.t1 MTR_5g078140 48.768 203 84 1 1 203 1 183 1.80e-58 191
MS.gene04389.t1 MTR_3g097450 56.376 149 63 1 1 149 1 147 3.79e-58 189
MS.gene04389.t1 MTR_4g102380 63.846 130 47 0 1 130 1 130 4.31e-58 188
MS.gene04389.t1 MTR_7g110830 58.442 154 61 1 1 151 1 154 1.20e-57 190
MS.gene04389.t1 MTR_3g065440 61.871 139 53 0 1 139 1 139 2.39e-57 188
MS.gene04389.t1 MTR_1g085040 64.394 132 47 0 1 132 1 132 4.22e-57 189
MS.gene04389.t1 MTR_1g085640 64.394 132 47 0 1 132 1 132 1.68e-56 188
MS.gene04389.t1 MTR_7g076740 58.519 135 55 1 1 134 1 135 7.23e-56 184
MS.gene04389.t1 MTR_4g105130 63.077 130 48 0 1 130 1 130 1.97e-55 184
MS.gene04389.t1 MTR_3g077110 63.566 129 47 0 1 129 1 129 6.38e-55 182
MS.gene04389.t1 MTR_4g057635 64.062 128 45 1 1 127 1 128 1.87e-54 181
MS.gene04389.t1 MTR_8g095390 59.091 132 54 0 1 132 1 132 1.94e-54 180
MS.gene04389.t1 MTR_1g017140 68.067 119 37 1 1 118 1 119 5.32e-54 180
MS.gene04389.t1 MTR_1g100653 65.517 116 40 0 1 116 1 116 5.55e-54 179
MS.gene04389.t1 MTR_2g064160 62.400 125 47 0 6 130 5 129 5.97e-54 179
MS.gene04389.t1 MTR_5g007370 60.938 128 50 0 1 128 1 128 8.45e-54 178
MS.gene04389.t1 MTR_1g017000 57.718 149 57 3 1 147 1 145 1.06e-53 176
MS.gene04389.t1 MTR_7g111290 65.385 130 45 0 1 130 1 130 2.08e-53 179
MS.gene04389.t1 MTR_7g102110 65.000 120 41 1 1 119 1 120 3.39e-53 176
MS.gene04389.t1 MTR_5g079670 60.800 125 49 0 3 127 2 126 3.42e-53 174
MS.gene04389.t1 MTR_1g112760 61.417 127 49 0 3 129 4 130 3.71e-53 174
MS.gene04389.t1 MTR_5g014990 66.387 119 39 1 1 118 1 119 4.37e-53 177
MS.gene04389.t1 MTR_3g103570 65.546 119 40 1 1 118 1 119 6.49e-53 177
MS.gene04389.t1 MTR_1g076150 66.379 116 39 0 1 116 1 116 1.11e-52 174
MS.gene04389.t1 MTR_1g043050 65.517 116 40 0 1 116 1 116 1.95e-52 173
MS.gene04389.t1 MTR_8g031360 55.152 165 62 6 1 153 1 165 2.62e-52 174
MS.gene04389.t1 MTR_1g043080 64.655 116 41 0 1 116 1 116 2.83e-52 173
MS.gene04389.t1 MTR_3g083540 61.600 125 48 0 5 129 34 158 6.96e-52 173
MS.gene04389.t1 MTR_0140s0030 64.655 116 41 0 1 116 2 117 4.71e-51 172
MS.gene04389.t1 MTR_0489s0020 64.655 116 41 0 1 116 2 117 4.71e-51 172
MS.gene04389.t1 MTR_4g121460 62.931 116 43 0 1 116 1 116 9.70e-51 171
MS.gene04389.t1 MTR_2g089450 61.207 116 45 0 1 116 1 116 1.04e-50 169
MS.gene04389.t1 MTR_2g095520 66.667 111 36 1 1 110 1 111 1.30e-50 171
MS.gene04389.t1 MTR_4g125520 61.345 119 46 0 1 119 1 119 2.31e-50 169
MS.gene04389.t1 MTR_5g042030 60.504 119 47 0 12 130 7 125 2.52e-50 169
MS.gene04389.t1 MTR_2g034790 62.069 116 44 0 1 116 1 116 2.95e-50 170
MS.gene04389.t1 MTR_7g010210 62.069 116 44 0 1 116 1 116 6.44e-50 167
MS.gene04389.t1 MTR_4g097570 68.182 110 34 1 1 109 1 110 6.74e-50 168
MS.gene04389.t1 MTR_7g010210 62.069 116 44 0 1 116 1 116 7.47e-50 169
MS.gene04389.t1 MTR_3g045430 58.088 136 56 1 1 135 1 136 1.17e-49 167
MS.gene04389.t1 MTR_7g117730 61.207 116 45 0 1 116 1 116 4.92e-49 164
MS.gene04389.t1 MTR_7g087130 60.000 125 48 1 1 123 1 125 4.95e-49 167
MS.gene04389.t1 MTR_3g039990 62.931 116 43 0 1 116 2 117 5.66e-49 166
MS.gene04389.t1 MTR_7g115650 62.069 116 44 0 1 116 1 116 1.03e-48 162
MS.gene04389.t1 MTR_8g017440 54.110 146 61 1 1 140 1 146 1.13e-48 166
MS.gene04389.t1 MTR_7g096930 62.069 116 44 0 1 116 1 116 2.04e-48 164
MS.gene04389.t1 MTR_4g097570 67.568 111 34 2 1 109 1 111 2.61e-48 164
MS.gene04389.t1 MTR_2g067420 64.220 109 39 0 2 110 4 112 5.07e-48 164
MS.gene04389.t1 MTR_2g099740 57.576 132 56 0 1 132 1 132 8.91e-48 165
MS.gene04389.t1 MTR_6g090405 64.655 116 40 1 1 115 1 116 9.78e-48 161
MS.gene04389.t1 MTR_6g012180 62.727 110 41 0 1 110 1 110 1.38e-47 162
MS.gene04389.t1 MTR_8g098860 60.345 116 46 0 1 116 1 116 1.79e-47 162
MS.gene04389.t1 MTR_0008s0390 59.483 116 46 1 1 115 1 116 3.55e-47 160
MS.gene04389.t1 MTR_8g027345 58.621 116 48 0 1 116 1 116 7.79e-47 160
MS.gene04389.t1 MTR_0251s0050 58.120 117 48 1 1 116 1 117 1.04e-46 159
MS.gene04389.t1 MTR_8g017540 60.976 123 48 0 1 123 47 169 1.62e-46 162
MS.gene04389.t1 MTR_0008s0470 57.759 116 48 1 1 115 1 116 2.36e-46 159
MS.gene04389.t1 MTR_4g485530 58.400 125 51 1 3 126 2 126 3.52e-46 155
MS.gene04389.t1 MTR_4g128670 63.063 111 40 1 1 110 1 111 3.63e-46 160
MS.gene04389.t1 MTR_8g017500 58.537 123 51 0 1 123 1 123 2.50e-45 157
MS.gene04389.t1 MTR_0063s0090 58.407 113 47 0 1 113 1 113 3.36e-45 154
MS.gene04389.t1 MTR_7g109320 62.069 116 44 0 1 116 1 116 4.94e-45 157
MS.gene04389.t1 MTR_2g089420 56.897 116 49 1 1 116 1 115 5.46e-45 159
MS.gene04389.t1 MTR_5g010020 60.000 110 44 0 1 110 1 110 1.43e-44 155
MS.gene04389.t1 MTR_8g017390 62.393 117 43 1 1 116 1 117 2.96e-44 157
MS.gene04389.t1 MTR_8g017340 58.462 130 52 2 1 129 1 129 6.64e-44 157
MS.gene04389.t1 MTR_4g065017 59.459 111 45 0 12 122 17 127 1.62e-43 152
MS.gene04389.t1 MTR_4g100720 56.522 115 50 0 9 123 10 124 3.50e-43 147
MS.gene04389.t1 MTR_2g097910 58.333 108 45 0 12 119 20 127 6.00e-43 150
MS.gene04389.t1 MTR_8g017350 57.692 130 53 2 1 129 1 129 8.64e-43 156
MS.gene04389.t1 MTR_3g028740 62.037 108 41 0 9 116 19 126 2.65e-42 149
MS.gene04389.t1 MTR_0008s0280 55.263 114 51 0 1 114 1 114 3.24e-42 146
MS.gene04389.t1 MTR_6g055910 59.633 109 44 0 7 115 9 117 9.55e-42 146
MS.gene04389.t1 MTR_8g020490 59.048 105 43 0 12 116 8 112 2.08e-41 145
MS.gene04389.t1 MTR_1g100667 50.365 137 67 1 13 149 14 149 2.22e-41 145
MS.gene04389.t1 MTR_3g052450 56.481 108 47 0 8 115 36 143 3.63e-39 145
MS.gene04389.t1 MTR_3g052430 58.095 105 44 0 11 115 40 144 5.91e-39 144
MS.gene04389.t1 MTR_1g110460 52.174 115 55 0 8 122 22 136 1.14e-38 139
MS.gene04389.t1 MTR_0247s0040 58.824 102 42 0 12 113 7 108 1.73e-38 135
MS.gene04389.t1 MTR_0197s0010 58.491 106 44 0 17 122 6 111 3.56e-38 135
MS.gene04389.t1 MTR_5g079120 55.556 108 48 0 9 116 58 165 3.73e-38 137
MS.gene04389.t1 MTR_0193s0090 56.190 105 46 0 12 116 7 111 3.22e-37 132
MS.gene04389.t1 MTR_1g073170 54.545 110 50 0 6 115 14 123 4.74e-37 133
MS.gene04389.t1 MTR_5g079220 53.636 110 51 0 7 116 16 125 4.86e-37 134
MS.gene04389.t1 MTR_7g017260 57.944 107 43 1 12 116 25 131 6.37e-37 134
MS.gene04389.t1 MTR_5g078930 56.757 111 47 1 6 115 2 112 6.75e-37 132
MS.gene04389.t1 MTR_5g088080 50.877 114 54 2 11 123 11 123 9.13e-37 133
MS.gene04389.t1 MTR_5g088150 50.877 114 54 2 11 123 11 123 9.13e-37 133
MS.gene04389.t1 MTR_5g488210 50.877 114 54 2 11 123 11 123 9.13e-37 133
MS.gene04389.t1 MTR_3g011610 53.982 113 51 1 12 123 37 149 1.00e-36 138
MS.gene04389.t1 MTR_5g488170 50.877 114 54 2 11 123 11 123 1.05e-36 132
MS.gene04389.t1 MTR_5g079290 55.238 105 47 0 12 116 17 121 1.16e-36 132
MS.gene04389.t1 MTR_5g088640 50.435 115 55 2 11 124 11 124 1.37e-36 132
MS.gene04389.t1 MTR_5g078800 57.143 105 45 0 12 116 7 111 1.52e-36 132
MS.gene04389.t1 MTR_1g062940 54.717 106 48 0 11 116 5 110 1.90e-36 130
MS.gene04389.t1 MTR_7g035075 53.774 106 49 0 11 116 13 118 2.16e-36 130
MS.gene04389.t1 MTR_7g111290 72.414 87 24 0 44 130 2 88 2.66e-36 134
MS.gene04389.t1 MTR_5g062790 51.304 115 54 2 11 124 8 121 3.73e-36 132
MS.gene04389.t1 MTR_2g088170 56.731 104 45 0 12 115 29 132 8.24e-36 135
MS.gene04389.t1 MTR_4g063100 54.369 103 47 0 13 115 8 110 8.39e-36 130
MS.gene04389.t1 MTR_6g006030 50.847 118 56 1 1 116 1 118 1.87e-35 128
MS.gene04389.t1 MTR_1g086510 48.800 125 63 1 12 136 21 144 3.00e-35 129
MS.gene04389.t1 MTR_8g042410 53.846 104 48 0 12 115 37 140 3.05e-35 134
MS.gene04389.t1 MTR_5g078950 55.882 102 45 0 12 113 7 108 3.58e-35 129
MS.gene04389.t1 MTR_1g045610 52.727 110 52 0 6 115 15 124 4.65e-35 128
MS.gene04389.t1 MTR_2g096380 52.336 107 51 0 9 115 3 109 4.69e-35 127
MS.gene04389.t1 MTR_5g078860 54.286 105 48 0 12 116 7 111 5.00e-35 129
MS.gene04389.t1 MTR_8g060940 55.446 101 45 0 12 112 7 107 5.07e-35 128
MS.gene04389.t1 MTR_1g086530 50.450 111 55 0 12 122 33 143 5.09e-35 129
MS.gene04389.t1 MTR_5g078910 54.286 105 48 0 12 116 7 111 9.11e-35 129
MS.gene04389.t1 MTR_0001s0360 54.286 105 48 0 12 116 7 111 1.76e-34 126
MS.gene04389.t1 MTR_5g016510 50.459 109 53 1 14 122 5 112 5.67e-33 124
MS.gene04389.t1 MTR_2g033170 49.593 123 61 1 11 133 23 144 1.35e-32 123
MS.gene04389.t1 MTR_1g021230 51.923 104 50 0 12 115 57 160 1.57e-32 125
MS.gene04389.t1 MTR_5g088610 49.565 115 56 2 11 124 8 121 7.88e-32 122
MS.gene04389.t1 MTR_4g019370 42.254 142 77 2 14 155 38 174 1.53e-31 121
MS.gene04389.t1 MTR_3g101290 44.444 144 59 4 14 143 37 173 1.75e-31 118
MS.gene04389.t1 MTR_4g094982 50.962 104 50 1 14 117 5 107 1.18e-30 117
MS.gene04389.t1 MTR_4g123040 46.825 126 66 1 11 136 23 147 1.60e-30 117
MS.gene04389.t1 MTR_8g006470 48.148 108 55 1 8 114 6 113 2.41e-30 116
MS.gene04389.t1 MTR_1g083630 46.281 121 64 1 12 131 12 132 4.96e-30 120
MS.gene04389.t1 MTR_5g007300 56.818 88 38 0 1 88 53 140 7.22e-30 111
MS.gene04389.t1 MTR_3g461510 62.637 91 34 0 216 306 1 91 9.36e-30 109
MS.gene04389.t1 MTR_4g029540 48.148 108 55 1 8 114 6 113 5.50e-29 113
MS.gene04389.t1 MTR_6g015455 47.748 111 57 1 14 124 5 114 9.14e-29 117
MS.gene04389.t1 MTR_6g055910 66.197 71 24 0 45 115 18 88 2.83e-27 107
MS.gene04389.t1 MTR_4g082040 48.039 102 52 1 14 115 105 205 3.45e-27 110
MS.gene04389.t1 MTR_5g049190 33.696 184 92 4 9 163 14 196 3.54e-27 107
MS.gene04389.t1 MTR_3g463400 42.222 135 74 3 14 145 133 266 1.10e-26 109
MS.gene04389.t1 MTR_4g128190 46.364 110 42 3 12 117 11 107 3.43e-26 104
MS.gene04389.t1 MTR_4g063100 61.111 72 28 0 44 115 10 81 5.37e-26 103
MS.gene04389.t1 MTR_5g041570 46.078 102 54 1 14 115 134 234 5.95e-26 107
MS.gene04389.t1 MTR_5g070020 47.115 104 54 1 14 117 122 224 6.44e-26 106
MS.gene04389.t1 MTR_1g085880 51.429 105 49 2 12 114 11 115 9.50e-26 102
MS.gene04389.t1 MTR_3g077650 44.545 110 60 1 8 117 175 283 9.65e-26 107
MS.gene04389.t1 MTR_7g061330 48.544 103 52 1 14 116 113 214 1.22e-25 107
MS.gene04389.t1 MTR_7g461410 48.544 103 52 1 14 116 113 214 1.22e-25 107
MS.gene04389.t1 MTR_4g105660 45.794 107 55 2 12 117 178 282 1.78e-25 105
MS.gene04389.t1 MTR_7g061330 48.544 103 52 1 14 116 77 178 1.90e-25 106
MS.gene04389.t1 MTR_6g074860 45.545 101 54 1 14 114 4 103 2.02e-25 102
MS.gene04389.t1 MTR_5g082910 47.573 103 52 2 10 112 16 116 2.96e-25 103
MS.gene04389.t1 MTR_1g085770 51.429 105 49 2 12 114 11 115 4.10e-25 103
MS.gene04389.t1 MTR_2g096380 58.333 72 30 0 44 115 19 90 3.38e-24 98.6
MS.gene04389.t1 MTR_7g037260 44.248 113 57 2 11 118 142 253 5.44e-24 100
MS.gene04389.t1 MTR_7g086960 46.078 102 54 1 14 115 89 189 5.58e-24 100
MS.gene04389.t1 MTR_7g451170 41.905 105 60 1 11 115 188 291 1.69e-23 100
MS.gene04389.t1 MTR_3g089045 47.573 103 51 2 14 115 16 116 3.21e-23 97.8
MS.gene04389.t1 MTR_6g027340 44.898 98 51 2 14 110 16 111 1.17e-22 94.0
MS.gene04389.t1 MTR_7g061550 35.252 139 82 3 10 140 3 141 1.24e-22 97.1
MS.gene04389.t1 MTR_4g088015 40.385 104 61 1 11 114 218 320 2.18e-22 97.4
MS.gene04389.t1 MTR_6g027360 43.000 100 54 2 12 110 76 173 1.12e-21 93.6
MS.gene04389.t1 MTR_3g110028 39.806 103 61 1 14 116 85 186 1.68e-21 95.9
MS.gene04389.t1 MTR_7g037130 42.478 113 59 2 11 118 142 253 2.09e-21 93.6
MS.gene04389.t1 MTR_1g057980 29.442 197 119 5 11 189 77 271 2.16e-21 92.8
MS.gene04389.t1 MTR_1g026870 32.680 153 83 3 14 159 85 224 4.23e-21 94.7
MS.gene04389.t1 MTR_6g027370 31.683 202 108 5 14 208 99 277 5.37e-21 92.4
MS.gene04389.t1 MTR_0023s0210 49.351 77 39 0 12 88 7 83 2.34e-20 84.3
MS.gene04389.t1 MTR_5g010650 44.000 100 54 2 10 109 107 204 3.43e-20 91.3
MS.gene04389.t1 MTR_7g035350 41.000 100 58 1 11 110 222 320 5.57e-20 90.5
MS.gene04389.t1 MTR_7g450950 37.615 109 64 2 11 116 154 261 8.22e-20 89.0
MS.gene04389.t1 MTR_8g468380 32.778 180 110 4 17 187 25 202 1.15e-18 86.7
MS.gene04389.t1 MTR_5g038910 42.424 99 56 1 17 115 29 126 4.35e-18 85.1
MS.gene04389.t1 MTR_5g038910 42.424 99 56 1 17 115 29 126 5.24e-18 84.3
MS.gene04389.t1 MTR_8g017480 57.692 52 22 0 1 52 1 52 1.96e-13 64.3
MS.gene04389.t1 MTR_6g055910 58.696 46 19 0 70 115 2 47 8.21e-12 64.3
MS.gene04389.t1 MTR_4g063100 59.524 42 17 0 74 115 5 46 1.57e-11 62.8
MS.gene04389.t1 MTR_2g096380 57.143 42 18 0 74 115 5 46 9.04e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04389.t1 AT5G56110 55.589 331 130 4 1 325 1 320 1.26e-117 342
MS.gene04389.t1 AT4G21440 65.957 141 47 1 1 141 1 140 2.65e-64 207
MS.gene04389.t1 AT4G05100 70.543 129 37 1 1 128 1 129 5.07e-64 205
MS.gene04389.t1 AT4G28110 69.531 128 39 0 1 128 1 128 6.96e-64 204
MS.gene04389.t1 AT5G15310 47.945 219 99 3 1 204 1 219 2.66e-62 198
MS.gene04389.t1 AT3G28470 71.324 136 39 0 1 136 1 136 5.56e-62 200
MS.gene04389.t1 AT4G17785 63.504 137 49 1 1 136 1 137 2.68e-61 199
MS.gene04389.t1 AT5G15310 49.048 210 97 3 1 200 1 210 2.96e-61 198
MS.gene04389.t1 AT4G17785 63.504 137 49 1 1 136 1 137 3.24e-61 199
MS.gene04389.t1 AT5G15310 56.395 172 66 2 1 163 1 172 3.52e-61 198
MS.gene04389.t1 AT3G01140 54.651 172 69 1 1 163 1 172 5.10e-61 198
MS.gene04389.t1 AT1G35515 58.599 157 61 1 1 157 1 153 6.83e-61 194
MS.gene04389.t1 AT3G02940 65.625 128 44 0 1 128 1 128 7.88e-61 197
MS.gene04389.t1 AT5G16770 65.625 128 44 0 1 128 1 128 8.24e-61 197
MS.gene04389.t1 AT5G16770 65.625 128 44 0 1 128 1 128 8.24e-61 197
MS.gene04389.t1 AT1G34670 63.121 141 52 0 1 141 1 141 1.05e-60 198
MS.gene04389.t1 AT5G16770 65.625 128 44 0 1 128 1 128 1.46e-60 197
MS.gene04389.t1 AT5G16770 65.625 128 44 0 1 128 1 128 1.46e-60 197
MS.gene04389.t1 AT3G02940 65.625 128 44 0 1 128 1 128 1.55e-60 196
MS.gene04389.t1 AT3G02940 65.625 128 44 0 1 128 1 128 1.55e-60 196
MS.gene04389.t1 AT5G10280 59.574 141 57 0 1 141 1 141 1.98e-59 194
MS.gene04389.t1 AT4G34990 64.615 130 46 0 1 130 1 130 3.01e-59 191
MS.gene04389.t1 AT4G09460 58.333 144 60 0 1 144 1 144 4.00e-59 190
MS.gene04389.t1 AT1G66230 63.704 135 49 0 1 135 1 135 1.57e-58 190
MS.gene04389.t1 AT3G61250 56.954 151 62 2 1 150 1 149 1.74e-58 190
MS.gene04389.t1 AT3G01140 54.167 168 68 1 5 163 48 215 3.49e-58 192
MS.gene04389.t1 AT2G16720 63.780 127 46 0 1 127 1 127 3.52e-58 189
MS.gene04389.t1 AT4G12350 48.958 192 93 2 1 187 1 192 5.89e-58 189
MS.gene04389.t1 AT4G38620 61.240 129 50 0 1 129 1 129 2.15e-57 187
MS.gene04389.t1 AT5G14340 61.364 132 51 0 1 132 13 144 2.27e-57 187
MS.gene04389.t1 AT4G01680 63.768 138 46 1 1 138 1 134 4.66e-57 185
MS.gene04389.t1 AT5G65230 63.281 128 47 0 1 128 1 128 1.68e-56 186
MS.gene04389.t1 AT5G60890 59.690 129 52 0 1 129 1 129 2.02e-56 185
MS.gene04389.t1 AT5G54230 63.910 133 48 0 1 133 1 133 2.04e-56 186
MS.gene04389.t1 AT4G22680 59.441 143 58 0 1 143 1 143 2.46e-56 184
MS.gene04389.t1 AT1G22640 62.205 127 48 0 1 127 1 127 3.11e-56 183
MS.gene04389.t1 AT4G01680 63.768 138 46 1 1 138 1 134 3.43e-56 186
MS.gene04389.t1 AT1G57560 61.481 135 52 0 1 135 1 135 5.02e-56 184
MS.gene04389.t1 AT5G61420 62.308 130 49 0 1 130 1 130 9.45e-56 185
MS.gene04389.t1 AT5G16600 63.846 130 47 0 1 130 1 130 1.07e-55 184
MS.gene04389.t1 AT5G07690 61.832 131 50 0 1 131 1 131 1.12e-55 184
MS.gene04389.t1 AT1G57560 63.077 130 48 0 1 130 1 130 1.35e-55 182
MS.gene04389.t1 AT5G26660 63.566 129 47 0 1 129 1 129 4.10e-55 183
MS.gene04389.t1 AT1G09540 62.879 132 49 0 1 132 1 132 8.23e-55 183
MS.gene04389.t1 AT1G18570 59.542 131 52 1 1 130 1 131 4.24e-54 181
MS.gene04389.t1 AT5G07700 62.308 130 49 0 1 130 1 130 1.02e-53 179
MS.gene04389.t1 AT5G07700 62.308 130 49 0 1 130 1 130 1.02e-53 179
MS.gene04389.t1 AT2G31180 68.376 117 37 0 1 117 1 117 1.26e-53 176
MS.gene04389.t1 AT1G74080 58.140 129 54 0 1 129 1 129 2.78e-53 178
MS.gene04389.t1 AT2G47460 56.164 146 64 0 1 146 1 146 3.59e-53 179
MS.gene04389.t1 AT3G23250 65.517 116 40 0 1 116 1 116 3.60e-53 176
MS.gene04389.t1 AT4G01680 58.667 150 46 2 1 138 1 146 1.07e-52 177
MS.gene04389.t1 AT1G18710 57.364 129 55 0 1 129 1 129 1.54e-52 174
MS.gene04389.t1 AT1G74430 58.594 128 53 0 1 128 1 128 1.90e-52 174
MS.gene04389.t1 AT1G79180 62.205 127 45 1 2 125 4 130 2.70e-52 174
MS.gene04389.t1 AT5G57620 65.546 119 40 1 1 118 1 119 3.45e-52 175
MS.gene04389.t1 AT3G49690 66.667 117 38 1 1 116 1 117 7.90e-52 174
MS.gene04389.t1 AT3G13540 60.800 125 49 0 5 129 16 140 2.95e-51 170
MS.gene04389.t1 AT5G62470 65.517 116 40 0 1 116 1 116 4.36e-51 173
MS.gene04389.t1 AT3G12720 61.983 121 46 0 6 126 16 136 5.55e-51 171
MS.gene04389.t1 AT1G16490 65.517 116 40 0 2 117 4 119 5.68e-51 170
MS.gene04389.t1 AT1G74650 64.706 119 42 0 1 119 1 119 7.27e-51 172
MS.gene04389.t1 AT5G65790 64.957 117 40 1 1 116 1 117 1.10e-50 172
MS.gene04389.t1 AT5G62320 56.204 137 53 1 2 131 3 139 1.77e-50 168
MS.gene04389.t1 AT2G36890 54.248 153 49 2 1 152 1 133 2.10e-50 169
MS.gene04389.t1 AT1G06180 64.655 116 41 0 1 116 1 116 2.66e-50 167
MS.gene04389.t1 AT2G36890 54.248 153 49 2 1 152 42 174 3.53e-50 170
MS.gene04389.t1 AT5G49330 63.793 116 42 0 1 116 1 116 5.23e-50 170
MS.gene04389.t1 AT5G23000 64.103 117 41 1 1 116 1 117 5.54e-50 169
MS.gene04389.t1 AT3G47600 62.185 119 45 0 1 119 1 119 8.52e-50 169
MS.gene04389.t1 AT3G62610 62.712 118 44 0 1 118 1 118 1.08e-49 169
MS.gene04389.t1 AT4G37780 63.248 117 42 1 1 116 1 117 2.05e-49 167
MS.gene04389.t1 AT5G62470 65.517 116 39 1 1 116 1 115 3.15e-49 168
MS.gene04389.t1 AT3G28910 60.656 122 48 0 1 122 1 122 7.65e-49 166
MS.gene04389.t1 AT1G56160 62.069 116 44 0 2 117 4 119 1.39e-48 165
MS.gene04389.t1 AT1G08810 61.538 117 45 0 1 117 1 117 3.72e-48 163
MS.gene04389.t1 AT3G13890 63.793 116 42 0 1 116 1 116 6.52e-48 165
MS.gene04389.t1 AT3G12820 61.404 114 44 0 3 116 5 118 8.42e-47 158
MS.gene04389.t1 AT1G63910 60.345 116 46 0 1 116 1 116 1.83e-46 161
MS.gene04389.t1 AT1G79180 50.000 160 44 2 2 125 4 163 3.65e-46 159
MS.gene04389.t1 AT3G13890 59.200 125 42 1 1 116 1 125 6.50e-45 157
MS.gene04389.t1 AT5G12870 62.037 108 41 0 12 119 18 125 5.67e-44 152
MS.gene04389.t1 AT5G35550 57.407 108 46 0 9 116 11 118 3.46e-42 147
MS.gene04389.t1 AT3G27920 58.407 113 45 1 8 118 8 120 4.30e-42 145
MS.gene04389.t1 AT5G52600 54.264 129 50 1 9 128 9 137 3.39e-41 142
MS.gene04389.t1 AT5G40330 59.259 108 43 1 13 120 13 119 4.81e-41 143
MS.gene04389.t1 AT5G14750 59.615 104 42 0 13 116 17 120 9.58e-41 141
MS.gene04389.t1 AT3G08500 60.185 108 43 0 9 116 27 134 8.71e-40 143
MS.gene04389.t1 AT3G27810 42.614 176 91 4 12 187 20 185 3.66e-39 138
MS.gene04389.t1 AT5G55020 53.982 113 51 1 12 123 26 138 2.49e-38 142
MS.gene04389.t1 AT1G25340 51.304 115 56 0 13 127 19 133 3.89e-38 137
MS.gene04389.t1 AT2G32460 53.704 108 50 0 8 115 14 121 6.09e-38 141
MS.gene04389.t1 AT2G26960 52.212 113 53 1 9 121 17 128 6.76e-38 140
MS.gene04389.t1 AT5G26660 67.778 90 29 0 40 129 9 98 7.67e-38 137
MS.gene04389.t1 AT2G32460 54.808 104 47 0 12 115 6 109 7.93e-38 140
MS.gene04389.t1 AT5G40350 50.000 128 64 0 12 139 17 144 2.94e-37 133
MS.gene04389.t1 AT1G48000 47.552 143 69 3 12 149 32 173 4.03e-37 133
MS.gene04389.t1 AT5G06100 53.097 113 52 1 12 123 32 144 5.20e-37 138
MS.gene04389.t1 AT4G26930 48.760 121 61 1 12 131 19 139 1.07e-36 136
MS.gene04389.t1 AT5G52260 58.879 107 44 0 9 115 9 115 1.12e-36 133
MS.gene04389.t1 AT5G06100 55.769 104 46 0 12 115 32 135 1.85e-36 137
MS.gene04389.t1 AT5G06100 55.769 104 46 0 12 115 32 135 1.85e-36 137
MS.gene04389.t1 AT5G06100 55.769 104 46 0 12 115 32 135 1.85e-36 137
MS.gene04389.t1 AT5G06100 55.769 104 46 0 12 115 32 135 1.85e-36 137
MS.gene04389.t1 AT4G25560 58.252 103 43 0 13 115 11 113 2.91e-36 132
MS.gene04389.t1 AT3G48920 53.211 109 51 0 9 117 15 123 3.09e-36 131
MS.gene04389.t1 AT3G11440 53.846 104 48 0 12 115 41 144 5.99e-36 135
MS.gene04389.t1 AT2G47190 46.512 129 68 1 8 136 16 143 6.17e-36 131
MS.gene04389.t1 AT3G01530 51.376 109 53 0 8 116 21 129 1.09e-35 128
MS.gene04389.t1 AT1G68320 48.333 120 62 0 10 129 17 136 1.52e-35 130
MS.gene04389.t1 AT3G11440 53.846 104 48 0 12 115 41 144 1.60e-35 135
MS.gene04389.t1 AT3G11440 53.846 104 48 0 12 115 41 144 1.60e-35 135
MS.gene04389.t1 AT3G11440 53.846 104 48 0 12 115 41 144 1.60e-35 135
MS.gene04389.t1 AT4G13480 57.282 103 44 0 13 115 7 109 2.62e-35 129
MS.gene04389.t1 AT3G24310 56.311 103 45 0 13 115 19 121 5.72e-35 128
MS.gene04389.t1 AT3G30210 55.882 102 45 0 13 114 28 129 1.83e-34 127
MS.gene04389.t1 AT1G18960 51.261 119 55 2 17 135 13 128 3.09e-34 127
MS.gene04389.t1 AT1G66370 52.885 104 49 0 12 115 8 111 2.10e-33 124
MS.gene04389.t1 AT1G25340 48.696 115 54 1 13 127 19 128 2.54e-33 124
MS.gene04389.t1 AT3G06490 50.000 126 62 1 11 136 18 142 3.49e-33 125
MS.gene04389.t1 AT1G25340 48.696 115 54 1 13 127 19 128 3.84e-33 124
MS.gene04389.t1 AT1G66380 46.970 132 60 1 12 143 8 129 5.31e-33 119
MS.gene04389.t1 AT3G60460 51.376 109 52 1 7 114 6 114 7.62e-33 124
MS.gene04389.t1 AT5G59780 48.598 107 55 0 9 115 5 111 1.95e-32 120
MS.gene04389.t1 AT2G26950 46.018 113 60 1 9 121 13 124 1.95e-32 124
MS.gene04389.t1 AT5G49620 43.537 147 79 2 8 154 22 164 3.66e-32 122
MS.gene04389.t1 AT3G46130 51.456 103 50 0 13 115 10 112 4.10e-32 120
MS.gene04389.t1 AT3G53200 50.467 107 53 0 9 115 6 112 5.12e-32 120
MS.gene04389.t1 AT2G23290 52.727 110 50 2 8 117 8 115 3.26e-31 119
MS.gene04389.t1 AT5G35550 66.667 72 24 0 45 116 50 121 4.02e-31 118
MS.gene04389.t1 AT4G37260 51.923 104 49 1 14 117 13 115 4.31e-31 119
MS.gene04389.t1 AT1G66390 54.808 104 47 0 12 115 8 111 5.02e-31 117
MS.gene04389.t1 AT1G56650 54.808 104 47 0 12 115 8 111 7.69e-31 117
MS.gene04389.t1 AT5G67300 51.429 105 50 1 14 118 6 109 2.00e-30 117
MS.gene04389.t1 AT3G50060 52.294 109 50 2 10 118 3 109 2.59e-29 114
MS.gene04389.t1 AT5G14750 66.667 69 23 0 48 116 18 86 5.93e-29 109
MS.gene04389.t1 AT3G47600 64.000 75 27 0 45 119 39 113 1.38e-28 112
MS.gene04389.t1 AT2G39880 43.262 141 70 3 14 152 50 182 1.44e-28 113
MS.gene04389.t1 AT3G27810 40.580 138 76 2 45 182 4 135 1.55e-28 108
MS.gene04389.t1 AT5G49620 39.752 161 79 3 8 154 22 178 1.61e-28 112
MS.gene04389.t1 AT3G09230 47.222 108 55 2 9 116 51 156 1.62e-28 114
MS.gene04389.t1 AT1G69560 46.789 109 55 2 9 116 102 208 9.16e-28 110
MS.gene04389.t1 AT1G69560 46.789 109 55 2 9 116 118 224 9.23e-28 111
MS.gene04389.t1 AT1G71030 58.025 81 34 0 51 131 5 85 1.18e-27 106
MS.gene04389.t1 AT3G12820 66.667 69 23 0 48 116 2 70 1.25e-27 107
MS.gene04389.t1 AT1G71030 55.682 88 38 1 44 131 13 99 1.54e-27 107
MS.gene04389.t1 AT3G55730 48.113 106 54 1 14 119 56 160 3.50e-27 110
MS.gene04389.t1 AT5G40350 50.515 97 48 0 43 139 3 99 3.53e-27 105
MS.gene04389.t1 AT1G22640 62.319 69 26 0 59 127 2 70 1.13e-26 104
MS.gene04389.t1 AT5G40360 44.643 112 60 2 8 119 152 261 1.13e-26 108
MS.gene04389.t1 AT5G58850 46.729 107 56 1 11 117 102 207 1.29e-26 109
MS.gene04389.t1 AT3G27785 46.847 111 56 2 8 117 183 291 1.63e-26 108
MS.gene04389.t1 AT5G11050 44.860 107 58 1 11 117 102 207 6.02e-26 107
MS.gene04389.t1 AT5G17800 48.039 102 52 1 14 115 93 193 1.15e-25 105
MS.gene04389.t1 AT1G26780 46.602 103 52 2 14 115 98 198 1.91e-25 103
MS.gene04389.t1 AT1G26780 46.602 103 52 2 14 115 98 198 3.28e-25 104
MS.gene04389.t1 AT5G59780 52.809 89 37 1 27 115 7 90 3.32e-25 101
MS.gene04389.t1 AT1G17950 46.078 102 54 1 14 115 5 105 7.09e-25 101
MS.gene04389.t1 AT4G18770 41.818 110 63 1 8 117 211 319 1.31e-24 103
MS.gene04389.t1 AT3G53200 60.563 71 28 0 45 115 9 79 1.33e-24 99.4
MS.gene04389.t1 AT4G33450 42.593 108 61 1 8 115 13 119 2.40e-24 99.8
MS.gene04389.t1 AT3G46130 58.333 72 30 0 44 115 9 80 2.73e-24 99.0
MS.gene04389.t1 AT1G66380 64.789 71 25 0 45 115 8 78 3.37e-24 95.1
MS.gene04389.t1 AT3G46130 59.155 71 29 0 45 115 20 90 4.85e-24 98.6
MS.gene04389.t1 AT5G02320 44.660 103 56 1 14 116 127 228 7.44e-24 102
MS.gene04389.t1 AT5G02320 44.660 103 56 1 14 116 127 228 7.44e-24 102
MS.gene04389.t1 AT5G02320 44.660 103 56 1 14 116 67 168 1.12e-23 101
MS.gene04389.t1 AT1G73410 47.573 103 51 2 14 115 6 106 2.33e-23 95.9
MS.gene04389.t1 AT1G73410 47.573 103 51 2 14 115 6 106 3.06e-23 96.7
MS.gene04389.t1 AT3G29020 42.718 103 58 1 14 116 65 166 4.99e-23 95.9
MS.gene04389.t1 AT3G29020 42.718 103 58 1 14 116 67 168 1.13e-22 96.3
MS.gene04389.t1 AT4G32730 39.806 103 61 1 14 116 87 188 2.65e-22 98.2
MS.gene04389.t1 AT4G32730 39.806 103 61 1 14 116 87 188 2.65e-22 98.2
MS.gene04389.t1 AT4G32730 39.806 103 61 1 14 116 87 188 2.65e-22 98.2
MS.gene04389.t1 AT4G32730 39.806 103 61 1 14 116 87 188 2.65e-22 98.2
MS.gene04389.t1 AT4G32730 39.806 103 61 1 14 116 87 188 3.49e-22 97.8
MS.gene04389.t1 AT3G09370 44.118 102 56 1 14 115 135 235 3.74e-22 97.1
MS.gene04389.t1 AT3G09370 44.118 102 56 1 14 115 130 230 3.93e-22 97.1
MS.gene04389.t1 AT3G09370 44.118 102 56 1 14 115 143 243 4.27e-22 97.1
MS.gene04389.t1 AT2G25230 38.333 120 71 2 7 124 19 137 5.95e-22 92.8
MS.gene04389.t1 AT5G11510 39.252 107 56 2 14 116 81 182 8.93e-21 93.6
MS.gene04389.t1 AT5G11510 39.252 107 56 2 14 116 81 182 8.93e-21 93.6
MS.gene04389.t1 AT5G11510 39.252 107 56 2 14 116 81 182 8.93e-21 93.6
MS.gene04389.t1 AT5G11510 39.806 103 61 1 14 116 81 182 9.33e-21 93.6
MS.gene04389.t1 AT5G11510 39.806 103 61 1 14 116 81 182 9.64e-21 93.6
MS.gene04389.t1 AT2G37630 32.353 136 85 2 13 141 3 138 1.34e-20 91.7
MS.gene04389.t1 AT3G23250 62.069 58 22 0 59 116 2 59 4.01e-20 87.8
MS.gene04389.t1 AT5G14750 62.069 58 22 0 59 116 2 59 5.41e-20 85.1
MS.gene04389.t1 AT5G14750 62.069 58 22 0 59 116 2 59 5.41e-20 85.1
MS.gene04389.t1 AT5G39700 40.000 100 59 1 15 114 57 155 1.02e-18 83.2
MS.gene04389.t1 AT5G40430 33.835 133 84 3 7 137 47 177 1.18e-18 84.3
MS.gene04389.t1 AT1G66380 45.783 83 45 0 12 94 8 90 2.68e-18 79.7
MS.gene04389.t1 AT2G02820 41.414 99 57 1 17 115 33 130 6.42e-18 83.6
MS.gene04389.t1 AT2G02820 41.414 99 57 1 17 115 33 130 1.09e-17 84.0
MS.gene04389.t1 AT2G02820 41.414 99 57 1 17 115 33 130 1.18e-17 84.0
MS.gene04389.t1 AT1G14350 42.424 99 56 1 17 115 28 125 2.25e-17 82.8
MS.gene04389.t1 AT1G14350 42.424 99 56 1 17 115 28 125 2.25e-17 82.8
MS.gene04389.t1 AT4G00540 38.532 109 63 2 11 116 100 207 4.32e-16 79.0
MS.gene04389.t1 AT4G00540 38.532 109 63 2 11 116 98 205 6.48e-16 78.6
MS.gene04389.t1 AT5G61420 64.000 50 18 0 81 130 2 51 1.31e-15 76.3
MS.gene04389.t1 AT4G28110 70.732 41 12 0 88 128 4 44 9.86e-15 72.0
MS.gene04389.t1 AT5G15310 68.889 45 14 0 84 128 5 49 1.59e-14 72.4
MS.gene04389.t1 AT5G14340 54.717 53 23 1 81 132 2 54 5.30e-14 69.7
MS.gene04389.t1 AT1G74430 55.769 52 23 0 77 128 8 59 2.63e-13 68.2
MS.gene04389.t1 AT1G22640 65.000 40 14 0 88 127 16 55 2.53e-12 65.1
MS.gene04389.t1 AT5G59780 57.143 42 18 0 74 115 5 46 3.26e-11 61.6
MS.gene04389.t1 AT4G25560 61.905 42 16 0 74 115 6 47 3.53e-11 62.4
MS.gene04389.t1 AT3G28910 60.000 45 18 0 78 122 2 46 5.26e-11 62.4
MS.gene04389.t1 AT3G46130 57.143 42 18 0 74 115 5 46 5.30e-11 61.6
MS.gene04389.t1 AT1G74650 61.905 42 16 0 78 119 2 43 9.70e-11 61.6

Find 91 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCTTACAGTTAAAGTAAT+TGG 0.210250 3.4:-57243575 None:intergenic
CAAGCCATTCTCCCATTTAA+TGG 0.217063 3.4:+57243399 MS.gene04389:CDS
TAGCAATTTCAGCCATTAAA+TGG 0.223128 3.4:-57243411 None:intergenic
CATTTCTTGTTCTTGTTGTA+TGG 0.251023 3.4:-57243647 None:intergenic
ACAGCATCTTCTCTTTCTTC+TGG 0.260623 3.4:-57243595 None:intergenic
CAATTCAGCCCATCATGTTT+TGG 0.275499 3.4:+57243760 MS.gene04389:CDS
TGTTGGCCCTGGTAGTTAAT+TGG 0.282501 3.4:-57243523 None:intergenic
CTCAACATGGCACTCGCAAC+TGG 0.327158 3.4:+57242914 MS.gene04389:CDS
GAAGGACTAACCAGCATTCT+TGG 0.330007 3.4:-57242947 None:intergenic
CTGGTAGTTAATTGGCTTCC+TGG 0.331694 3.4:-57243515 None:intergenic
AATGTTTACCCTACAATGTC+TGG 0.342765 3.4:+57243733 MS.gene04389:CDS
ACAGTCTGAGTTGAATATAT+TGG 0.366444 3.4:-57243929 None:intergenic
GATTAAGTTTGACCTATCTA+AGG 0.367315 3.4:+57243624 MS.gene04389:CDS
GAGAATGGCTTGTGGGTGAC+AGG 0.403681 3.4:-57243388 None:intergenic
GCTCTTCTCCATCCGAGAAA+TGG 0.404593 3.4:-57243122 None:intergenic
CTTGTTGTATGGCCTTAGAT+AGG 0.418669 3.4:-57243636 None:intergenic
TATAATATTTCTTATACCAT+AGG 0.421907 3.4:-57243988 None:intergenic
CCAACATTCTAATGAAGCTC+TGG 0.425128 3.4:+57243540 MS.gene04389:CDS
GTGTCCCAAGGTTTATTTGT+GGG 0.425448 3.4:-57243673 None:intergenic
AAATGGCCATGTTTCAGATC+AGG 0.429618 3.4:-57243105 None:intergenic
CTGATAGCAGCGCAGCTGCC+AGG 0.436902 3.4:+57243292 MS.gene04389:CDS
TCAGCCATTAAATGGGAGAA+TGG 0.437379 3.4:-57243403 None:intergenic
TCTGAAACATGGCCATTTCT+CGG 0.444221 3.4:+57243110 MS.gene04389:CDS
CCTTTATTGCCAAAACATGA+TGG 0.447943 3.4:-57243769 None:intergenic
TGCTTCCAGTACATAAACTT+TGG 0.463807 3.4:-57243810 None:intergenic
ATTGTAGGGTAAACATTGTA+TGG 0.467777 3.4:-57243727 None:intergenic
GAGAGCTTGTTATCTTCCTC+AGG 0.467842 3.4:-57242880 None:intergenic
ATAATATTTCTTATACCATA+GGG 0.469555 3.4:-57243987 None:intergenic
ACATCATTGTCGGTGCGTCC+TGG 0.471385 3.4:-57243310 None:intergenic
CATACAACAAGAACAAGAAA+TGG 0.471573 3.4:+57243648 MS.gene04389:CDS
AGCAATTTCAGCCATTAAAT+GGG 0.472879 3.4:-57243410 None:intergenic
CCAGAGCTTCATTAGAATGT+TGG 0.479076 3.4:-57243540 None:intergenic
AAGGACTAACCAGCATTCTT+GGG 0.483633 3.4:-57242946 None:intergenic
AATTGAAACCCAGACATTGT+AGG 0.493777 3.4:-57243742 None:intergenic
CACCTAGCTGAAGCAGCCCT+TGG 0.495944 3.4:+57243460 MS.gene04389:CDS
TAATTGGCTTCCTGGTAAGA+AGG 0.496087 3.4:-57243507 None:intergenic
GTACATAAACTTTGGCTCCA+TGG 0.498108 3.4:-57243802 None:intergenic
CGCCTCATTCCCAAGAATGC+TGG 0.504148 3.4:+57242937 MS.gene04389:CDS
GCCATGTTGAGCAATGTAAG+AGG 0.506799 3.4:-57242902 None:intergenic
GGCTGAAATTGCTACAACAT+TGG 0.510087 3.4:+57243420 MS.gene04389:CDS
CGATGATTTAATGAACCCTA+TGG 0.511276 3.4:+57243972 MS.gene04389:CDS
GTGGAAAGAGCTGCAGGCTA+AGG 0.513697 3.4:+57243064 MS.gene04389:CDS
CAGGAAGCCAATTAACTACC+AGG 0.514872 3.4:+57243516 MS.gene04389:CDS
AGAGATGTGGAAAGAGCTGC+AGG 0.518445 3.4:+57243058 MS.gene04389:CDS
GAAAGAGCTGCAGGCTAAGG+TGG 0.518447 3.4:+57243067 MS.gene04389:CDS
AGGTGCTCCACCTTCTTACC+AGG 0.518602 3.4:+57243497 MS.gene04389:CDS
CCTTGGTTGTTTCAAAGATG+AGG 0.521377 3.4:+57243477 MS.gene04389:CDS
TGGAGCCAAAGTTTATGTAC+TGG 0.524375 3.4:+57243805 MS.gene04389:CDS
AGAATGGCTTGTGGGTGACA+GGG 0.524652 3.4:-57243387 None:intergenic
GGTACCCACAAATAAACCTT+GGG 0.525783 3.4:+57243669 MS.gene04389:CDS
ATGTTTACCCTACAATGTCT+GGG 0.526506 3.4:+57243734 MS.gene04389:CDS
GCTAGGTGAGCTGCCTGTGG+CGG 0.527045 3.4:-57243445 None:intergenic
ATTGAAACCCAGACATTGTA+GGG 0.535977 3.4:-57243741 None:intergenic
CATAGGGTTCATTAAATCAT+CGG 0.538774 3.4:-57243971 None:intergenic
CAACATTCTAATGAAGCTCT+GGG 0.540066 3.4:+57243541 MS.gene04389:CDS
AACCAGCATTCTTGGGAATG+AGG 0.548940 3.4:-57242939 None:intergenic
CTTTATTGCCAAAACATGAT+GGG 0.551853 3.4:-57243768 None:intergenic
GGGTTCATTAAATCATCGGC+TGG 0.556449 3.4:-57243967 None:intergenic
CTTCATTAGAATGTTGGCCC+TGG 0.558141 3.4:-57243534 None:intergenic
ACTTGCAGTTGTTGCTGCAG+TGG 0.558821 3.4:-57243695 None:intergenic
TCCTCTTACATTGCTCAACA+TGG 0.561657 3.4:+57242901 MS.gene04389:CDS
AAACATGGCCATTTCTCGGA+TGG 0.561724 3.4:+57243114 MS.gene04389:CDS
TAAATAGGTCTTCAGAGATG+TGG 0.563355 3.4:+57243045 MS.gene04389:intron
TACAACATTGGCACCGCCAC+AGG 0.565334 3.4:+57243432 MS.gene04389:CDS
AAACTGGCTTTGCTGATCCA+TGG 0.566371 3.4:-57243842 None:intergenic
TGGTACCCACAAATAAACCT+TGG 0.568184 3.4:+57243668 MS.gene04389:CDS
GGTGTCCCAAGGTTTATTTG+TGG 0.570222 3.4:-57243674 None:intergenic
GTTGCTGCAGTGGTGTCCCA+AGG 0.570689 3.4:-57243685 None:intergenic
AATGGCCATGTTTCAGATCA+GGG 0.575848 3.4:-57243104 None:intergenic
ACATTGTCCTTCTCACAGCA+TGG 0.579859 3.4:-57242838 None:intergenic
TAAATGGGAGAATGGCTTGT+GGG 0.580198 3.4:-57243395 None:intergenic
TGGAAGCACATGCACAGCCA+TGG 0.589208 3.4:+57243825 MS.gene04389:CDS
TCGTATTCCATGCTGTGAGA+AGG 0.593369 3.4:+57242831 MS.gene04389:CDS
TCAACTCAGACTGTGTCGTG+TGG 0.600659 3.4:+57243938 MS.gene04389:CDS
CTTCGCCCTGATCTGAAACA+TGG 0.601248 3.4:+57243099 MS.gene04389:CDS
CAACTCAGACTGTGTCGTGT+GGG 0.601754 3.4:+57243939 MS.gene04389:CDS
TTGGCTTCCTGGTAAGAAGG+TGG 0.602905 3.4:-57243504 None:intergenic
TCAGCTAGGTGAGCTGCCTG+TGG 0.608657 3.4:-57243448 None:intergenic
AACCAAGGGCTGCTTCAGCT+AGG 0.608754 3.4:-57243462 None:intergenic
AAAACTTGAAGAGGAAAATG+GGG 0.610613 3.4:+57243870 MS.gene04389:CDS
GGAAAATGGGGATGATTCTG+AGG 0.614466 3.4:+57243882 MS.gene04389:CDS
GAGAGGTCAGTGGACACCTG+AGG 0.624551 3.4:+57242864 MS.gene04389:CDS
CATGTTTCAGATCAGGGCGA+AGG 0.628322 3.4:-57243098 None:intergenic
CCTCATCTTTGAAACAACCA+AGG 0.643946 3.4:-57243477 None:intergenic
CTCATCTTTGAAACAACCAA+GGG 0.652070 3.4:-57243476 None:intergenic
GAGAAGGACAATGTGAAGAG+AGG 0.654708 3.4:+57242847 MS.gene04389:CDS
AGGAAGCCAATTAACTACCA+GGG 0.690655 3.4:+57243517 MS.gene04389:CDS
ATAAAGGGGATGCATCACCA+TGG 0.694152 3.4:+57243785 MS.gene04389:CDS
TTAAATGGGAGAATGGCTTG+TGG 0.703670 3.4:-57243396 None:intergenic
ACAATGTGAAGAGAGGTCAG+TGG 0.730164 3.4:+57242854 MS.gene04389:CDS
AACATTCTAATGAAGCTCTG+GGG 0.732971 3.4:+57243542 MS.gene04389:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATATTTAGACGAATA+GGG - chr3.4:57242974-57242993 None:intergenic 15.0%
!!! TTTTGTGGATTAAATTAAAT+AGG + chr3.4:57243030-57243049 MS.gene04389:intron 15.0%
!! CAAATTATATTTAGACGAAT+AGG - chr3.4:57242975-57242994 None:intergenic 20.0%
!!! ACTTTAATACTTGATTTTTG+TGG + chr3.4:57243015-57243034 MS.gene04389:intron 20.0%
!!! TTGTTAATGATTTGCTTAAA+TGG + chr3.4:57243254-57243273 MS.gene04389:intron 20.0%
! AAAAACTTGAAGAGGAAAAT+GGG + chr3.4:57243869-57243888 MS.gene04389:CDS 25.0%
! ACAATGATGTCAAAAATCAT+TGG + chr3.4:57243323-57243342 MS.gene04389:CDS 25.0%
! CTAATGTTATCTATGCATTA+AGG + chr3.4:57243188-57243207 MS.gene04389:intron 25.0%
! TAATGCATAGATAACATTAG+TGG - chr3.4:57243188-57243207 None:intergenic 25.0%
!! ATGATTTTTGACATCATTGT+CGG - chr3.4:57243323-57243342 None:intergenic 25.0%
AAAACTTGAAGAGGAAAATG+GGG + chr3.4:57243870-57243889 MS.gene04389:CDS 30.0%
AGCAATTTCAGCCATTAAAT+GGG - chr3.4:57243413-57243432 None:intergenic 30.0%
ATTGTAGGGTAAACATTGTA+TGG - chr3.4:57243730-57243749 None:intergenic 30.0%
CATACAACAAGAACAAGAAA+TGG + chr3.4:57243648-57243667 MS.gene04389:CDS 30.0%
CATAGGGTTCATTAAATCAT+CGG - chr3.4:57243974-57243993 None:intergenic 30.0%
CTTTATTGCCAAAACATGAT+GGG - chr3.4:57243771-57243790 None:intergenic 30.0%
GAAAAACTTGAAGAGGAAAA+TGG + chr3.4:57243868-57243887 MS.gene04389:CDS 30.0%
GATTAAGTTTGACCTATCTA+AGG + chr3.4:57243624-57243643 MS.gene04389:CDS 30.0%
GTTTCATGAAAAACTTGAAG+AGG + chr3.4:57243861-57243880 MS.gene04389:CDS 30.0%
TAGCAATTTCAGCCATTAAA+TGG - chr3.4:57243414-57243433 None:intergenic 30.0%
TGGCTTACAGTTAAAGTAAT+TGG - chr3.4:57243578-57243597 None:intergenic 30.0%
! ACAGTCTGAGTTGAATATAT+TGG - chr3.4:57243932-57243951 None:intergenic 30.0%
! CATTTCTTGTTCTTGTTGTA+TGG - chr3.4:57243650-57243669 None:intergenic 30.0%
!! CTTCAAGTTTTTCATGAAAC+TGG - chr3.4:57243861-57243880 None:intergenic 30.0%
!!! ATCATGTTTTGGCAATAAAG+GGG + chr3.4:57243771-57243790 MS.gene04389:CDS 30.0%
!!! CATCATGTTTTGGCAATAAA+GGG + chr3.4:57243770-57243789 MS.gene04389:CDS 30.0%
!!! TTCATTCAGTTTTTGGTAAC+AGG + chr3.4:57243160-57243179 MS.gene04389:CDS 30.0%
AAAAAGAAACTGTCTGGCAT+GGG + chr3.4:57243358-57243377 MS.gene04389:CDS 35.0%
AACATTCTAATGAAGCTCTG+GGG + chr3.4:57243542-57243561 MS.gene04389:CDS 35.0%
AAGCTGAAAAAGAAACTGTC+TGG + chr3.4:57243352-57243371 MS.gene04389:CDS 35.0%
AATGTTTACCCTACAATGTC+TGG + chr3.4:57243733-57243752 MS.gene04389:CDS 35.0%
AATTGAAACCCAGACATTGT+AGG - chr3.4:57243745-57243764 None:intergenic 35.0%
ATGTTTACCCTACAATGTCT+GGG + chr3.4:57243734-57243753 MS.gene04389:CDS 35.0%
ATTGAAACCCAGACATTGTA+GGG - chr3.4:57243744-57243763 None:intergenic 35.0%
CAACATTCTAATGAAGCTCT+GGG + chr3.4:57243541-57243560 MS.gene04389:CDS 35.0%
CCTTTATTGCCAAAACATGA+TGG - chr3.4:57243772-57243791 None:intergenic 35.0%
CGATGATTTAATGAACCCTA+TGG + chr3.4:57243972-57243991 MS.gene04389:CDS 35.0%
TAAATAGGTCTTCAGAGATG+TGG + chr3.4:57243045-57243064 MS.gene04389:intron 35.0%
TATTTAGACGAATAGGGAGA+AGG - chr3.4:57242968-57242987 None:intergenic 35.0%
TGCTTAAATGGTTGTTCAGA+TGG + chr3.4:57243266-57243285 MS.gene04389:intron 35.0%
TGCTTCCAGTACATAAACTT+TGG - chr3.4:57243813-57243832 None:intergenic 35.0%
! GTGAAGCTTCATTCAGTTTT+TGG + chr3.4:57243153-57243172 MS.gene04389:CDS 35.0%
!! CTCATCTTTGAAACAACCAA+GGG - chr3.4:57243479-57243498 None:intergenic 35.0%
!!! AGACAGTTTCTTTTTCAGCT+TGG - chr3.4:57243353-57243372 None:intergenic 35.0%
!!! CCATCATGTTTTGGCAATAA+AGG + chr3.4:57243769-57243788 MS.gene04389:CDS 35.0%
AAATGGCCATGTTTCAGATC+AGG - chr3.4:57243108-57243127 None:intergenic 40.0%
AAGGACTAACCAGCATTCTT+GGG - chr3.4:57242949-57242968 None:intergenic 40.0%
AATGGCCATGTTTCAGATCA+GGG - chr3.4:57243107-57243126 None:intergenic 40.0%
ACAGCATCTTCTCTTTCTTC+TGG - chr3.4:57243598-57243617 None:intergenic 40.0%
AGGAAGCCAATTAACTACCA+GGG + chr3.4:57243517-57243536 MS.gene04389:CDS 40.0%
CAAGCCATTCTCCCATTTAA+TGG + chr3.4:57243399-57243418 MS.gene04389:CDS 40.0%
CCAACATTCTAATGAAGCTC+TGG + chr3.4:57243540-57243559 MS.gene04389:CDS 40.0%
CCAGAGCTTCATTAGAATGT+TGG - chr3.4:57243543-57243562 None:intergenic 40.0%
GAAAAAGAAACTGTCTGGCA+TGG + chr3.4:57243357-57243376 MS.gene04389:CDS 40.0%
GGCTGAAATTGCTACAACAT+TGG + chr3.4:57243420-57243439 MS.gene04389:CDS 40.0%
GGTACCCACAAATAAACCTT+GGG + chr3.4:57243669-57243688 MS.gene04389:CDS 40.0%
GTGTCCCAAGGTTTATTTGT+GGG - chr3.4:57243676-57243695 None:intergenic 40.0%
TCAGCCATTAAATGGGAGAA+TGG - chr3.4:57243406-57243425 None:intergenic 40.0%
TCCTCTTACATTGCTCAACA+TGG + chr3.4:57242901-57242920 MS.gene04389:CDS 40.0%
TGGAGCCAAAGTTTATGTAC+TGG + chr3.4:57243805-57243824 MS.gene04389:CDS 40.0%
TGGTACCCACAAATAAACCT+TGG + chr3.4:57243668-57243687 MS.gene04389:CDS 40.0%
TTAAATGGGAGAATGGCTTG+TGG - chr3.4:57243399-57243418 None:intergenic 40.0%
! CAATTCAGCCCATCATGTTT+TGG + chr3.4:57243760-57243779 MS.gene04389:CDS 40.0%
! CCTTGGTTGTTTCAAAGATG+AGG + chr3.4:57243477-57243496 MS.gene04389:CDS 40.0%
! CTTGTTGTATGGCCTTAGAT+AGG - chr3.4:57243639-57243658 None:intergenic 40.0%
! GTACATAAACTTTGGCTCCA+TGG - chr3.4:57243805-57243824 None:intergenic 40.0%
! TAAATGGGAGAATGGCTTGT+GGG - chr3.4:57243398-57243417 None:intergenic 40.0%
! TAATTGGCTTCCTGGTAAGA+AGG - chr3.4:57243510-57243529 None:intergenic 40.0%
! TCTGAAACATGGCCATTTCT+CGG + chr3.4:57243110-57243129 MS.gene04389:CDS 40.0%
!! CCTCATCTTTGAAACAACCA+AGG - chr3.4:57243480-57243499 None:intergenic 40.0%
AAACATGGCCATTTCTCGGA+TGG + chr3.4:57243114-57243133 MS.gene04389:CDS 45.0%
AACCAGCATTCTTGGGAATG+AGG - chr3.4:57242942-57242961 None:intergenic 45.0%
ACAATGTGAAGAGAGGTCAG+TGG + chr3.4:57242854-57242873 MS.gene04389:CDS 45.0%
ACATTGTCCTTCTCACAGCA+TGG - chr3.4:57242841-57242860 None:intergenic 45.0%
ATAAAGGGGATGCATCACCA+TGG + chr3.4:57243785-57243804 MS.gene04389:CDS 45.0%
CAGGAAGCCAATTAACTACC+AGG + chr3.4:57243516-57243535 MS.gene04389:CDS 45.0%
CTTCATTAGAATGTTGGCCC+TGG - chr3.4:57243537-57243556 None:intergenic 45.0%
GAAGGACTAACCAGCATTCT+TGG - chr3.4:57242950-57242969 None:intergenic 45.0%
GAGAAGGACAATGTGAAGAG+AGG + chr3.4:57242847-57242866 MS.gene04389:CDS 45.0%
GCCATGTTGAGCAATGTAAG+AGG - chr3.4:57242905-57242924 None:intergenic 45.0%
GGAAAATGGGGATGATTCTG+AGG + chr3.4:57243882-57243901 MS.gene04389:CDS 45.0%
GGGTTCATTAAATCATCGGC+TGG - chr3.4:57243970-57243989 None:intergenic 45.0%
GGTGTCCCAAGGTTTATTTG+TGG - chr3.4:57243677-57243696 None:intergenic 45.0%
TCGTATTCCATGCTGTGAGA+AGG + chr3.4:57242831-57242850 MS.gene04389:CDS 45.0%
TGTTGGCCCTGGTAGTTAAT+TGG - chr3.4:57243526-57243545 None:intergenic 45.0%
! CTGGTAGTTAATTGGCTTCC+TGG - chr3.4:57243518-57243537 None:intergenic 45.0%
!! AAACTGGCTTTGCTGATCCA+TGG - chr3.4:57243845-57243864 None:intergenic 45.0%
!! GAGAGCTTGTTATCTTCCTC+AGG - chr3.4:57242883-57242902 None:intergenic 45.0%
ACTTGCAGTTGTTGCTGCAG+TGG - chr3.4:57243698-57243717 None:intergenic 50.0%
AGAGATGTGGAAAGAGCTGC+AGG + chr3.4:57243058-57243077 MS.gene04389:CDS 50.0%
CAACTCAGACTGTGTCGTGT+GGG + chr3.4:57243939-57243958 MS.gene04389:CDS 50.0%
CATGTTTCAGATCAGGGCGA+AGG - chr3.4:57243101-57243120 None:intergenic 50.0%
GCTCTTCTCCATCCGAGAAA+TGG - chr3.4:57243125-57243144 None:intergenic 50.0%
TCAACTCAGACTGTGTCGTG+TGG + chr3.4:57243938-57243957 MS.gene04389:CDS 50.0%
TTGGCTTCCTGGTAAGAAGG+TGG - chr3.4:57243507-57243526 None:intergenic 50.0%
! AGAATGGCTTGTGGGTGACA+GGG - chr3.4:57243390-57243409 None:intergenic 50.0%
! CTTCGCCCTGATCTGAAACA+TGG + chr3.4:57243099-57243118 MS.gene04389:CDS 50.0%
AACCAAGGGCTGCTTCAGCT+AGG - chr3.4:57243465-57243484 None:intergenic 55.0%
ACATCATTGTCGGTGCGTCC+TGG - chr3.4:57243313-57243332 None:intergenic 55.0%
AGGTGCTCCACCTTCTTACC+AGG + chr3.4:57243497-57243516 MS.gene04389:CDS 55.0%
CGCCTCATTCCCAAGAATGC+TGG + chr3.4:57242937-57242956 MS.gene04389:CDS 55.0%
CTCAACATGGCACTCGCAAC+TGG + chr3.4:57242914-57242933 MS.gene04389:CDS 55.0%
GAAAGAGCTGCAGGCTAAGG+TGG + chr3.4:57243067-57243086 MS.gene04389:CDS 55.0%
GTGGAAAGAGCTGCAGGCTA+AGG + chr3.4:57243064-57243083 MS.gene04389:CDS 55.0%
TACAACATTGGCACCGCCAC+AGG + chr3.4:57243432-57243451 MS.gene04389:CDS 55.0%
! GAGAATGGCTTGTGGGTGAC+AGG - chr3.4:57243391-57243410 None:intergenic 55.0%
! TGGAAGCACATGCACAGCCA+TGG + chr3.4:57243825-57243844 MS.gene04389:CDS 55.0%
CACCTAGCTGAAGCAGCCCT+TGG + chr3.4:57243460-57243479 MS.gene04389:CDS 60.0%
GAGAGGTCAGTGGACACCTG+AGG + chr3.4:57242864-57242883 MS.gene04389:CDS 60.0%
GTTGCTGCAGTGGTGTCCCA+AGG - chr3.4:57243688-57243707 None:intergenic 60.0%
TCAGCTAGGTGAGCTGCCTG+TGG - chr3.4:57243451-57243470 None:intergenic 60.0%
CTGATAGCAGCGCAGCTGCC+AGG + chr3.4:57243292-57243311 MS.gene04389:CDS 65.0%
GCTAGGTGAGCTGCCTGTGG+CGG - chr3.4:57243448-57243467 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 57242826 57243999 57242826 ID=MS.gene04389
chr3.4 mRNA 57242826 57243999 57242826 ID=MS.gene04389.t1;Parent=MS.gene04389
chr3.4 exon 57242826 57242958 57242826 ID=MS.gene04389.t1.exon1;Parent=MS.gene04389.t1
chr3.4 CDS 57242826 57242958 57242826 ID=cds.MS.gene04389.t1;Parent=MS.gene04389.t1
chr3.4 exon 57243052 57243181 57243052 ID=MS.gene04389.t1.exon2;Parent=MS.gene04389.t1
chr3.4 CDS 57243052 57243181 57243052 ID=cds.MS.gene04389.t1;Parent=MS.gene04389.t1
chr3.4 exon 57243285 57243999 57243285 ID=MS.gene04389.t1.exon3;Parent=MS.gene04389.t1
chr3.4 CDS 57243285 57243999 57243285 ID=cds.MS.gene04389.t1;Parent=MS.gene04389.t1
Gene Sequence

>MS.gene04389

ATGGGTCGTATTCCATGCTGTGAGAAGGACAATGTGAAGAGAGGTCAGTGGACACCTGAGGAAGATAACAAGCTCTCCTCTTACATTGCTCAACATGGCACTCGCAACTGGCGCCTCATTCCCAAGAATGCTGGTTAGTCCTTCTCCCTATTCGTCTAAATATAATTTGAATCAATGTCAATAAAACTAACTTTAATACTTGATTTTTGTGGATTAAATTAAATAGGTCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGCCCTGATCTGAAACATGGCCATTTCTCGGATGGAGAAGAGCAAACAATTGTGAAGCTTCATTCAGTTTTTGGTAACAGGTACCACTAATGTTATCTATGCATTAAGGTTATGTTATGTTATTCGTAGTGTATGAGATTCTCTTTATCACATTGTTAATGATTTGCTTAAATGGTTGTTCAGATGGTCTCTGATAGCAGCGCAGCTGCCAGGACGCACCGACAATGATGTCAAAAATCATTGGAACACCAAGCTGAAAAAGAAACTGTCTGGCATGGGTATAGACCCTGTCACCCACAAGCCATTCTCCCATTTAATGGCTGAAATTGCTACAACATTGGCACCGCCACAGGCAGCTCACCTAGCTGAAGCAGCCCTTGGTTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAGGAAGCCAATTAACTACCAGGGCCAACATTCTAATGAAGCTCTGGGGAATAACATCACCAATTACTTTAACTGTAAGCCAGAAGAAAGAGAAGATGCTGTTGAGAAGATTAAGTTTGACCTATCTAAGGCCATACAACAAGAACAAGAAATGGTACCCACAAATAAACCTTGGGACACCACTGCAGCAACAACTGCAAGTTTTGCAATGCCATACAATGTTTACCCTACAATGTCTGGGTTTCAATTCAGCCCATCATGTTTTGGCAATAAAGGGGATGCATCACCATGGAGCCAAAGTTTATGTACTGGAAGCACATGCACAGCCATGGATCAGCAAAGCCAGTTTCATGAAAAACTTGAAGAGGAAAATGGGGATGATTCTGAGGCTACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGTGTCGTGTGGGATTTACCAGCCGATGATTTAATGAACCCTATGGTATAA
Protein sequence

>MS.gene04389.t1

MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGHFSDGEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNEALGNNITNYFNCKPEEREDAVEKIKFDLSKAIQQEQEMVPTNKPWDTTAATTASFAMPYNVYPTMSGFQFSPSCFGNKGDASPWSQSLCTGSTCTAMDQQSQFHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPADDLMNPMV