AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043895


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043895.t1 MTR_5g064950 79.012 324 44 2 1 324 1 300 0.0 520
MS.gene043895.t1 MTR_5g064950 79.452 292 37 1 1 292 1 269 2.87e-171 478
MS.gene043895.t1 MTR_3g099620 53.097 339 119 13 1 321 1 317 7.88e-100 297
MS.gene043895.t1 MTR_7g113830 44.512 328 145 12 1 321 14 311 5.24e-76 236
MS.gene043895.t1 MTR_1g082480 40.469 341 160 9 1 319 14 333 6.47e-67 213
MS.gene043895.t1 MTR_8g066770 52.336 214 93 5 113 324 104 310 2.89e-66 211
MS.gene043895.t1 MTR_1g082480 40.323 310 151 7 1 292 14 307 7.81e-59 192
MS.gene043895.t1 MTR_8g024210 44.660 206 91 3 112 312 170 357 2.98e-46 160
MS.gene043895.t1 MTR_0194s0050 41.860 215 115 5 105 312 166 377 4.51e-44 155
MS.gene043895.t1 MTR_2g022280 38.636 176 104 2 123 298 1 172 8.15e-34 123
MS.gene043895.t1 MTR_3g090850 30.201 298 162 7 46 298 19 315 3.43e-31 120
MS.gene043895.t1 MTR_1g028470 30.147 272 152 7 46 298 27 279 6.49e-26 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043895.t1 AT1G72210 47.813 343 128 11 1 319 1 316 1.12e-86 263
MS.gene043895.t1 AT1G72210 45.886 316 121 10 1 292 1 290 3.33e-74 231
MS.gene043895.t1 AT1G22490 45.181 332 140 12 1 319 1 303 3.97e-72 226
MS.gene043895.t1 AT1G22490 43.279 305 132 11 1 292 1 277 2.87e-59 193
MS.gene043895.t1 AT4G01460 39.906 213 111 3 113 319 105 306 1.42e-42 149
MS.gene043895.t1 AT4G01460 39.906 213 111 3 113 319 105 306 1.42e-42 149
MS.gene043895.t1 AT5G46690 44.538 238 88 8 113 319 78 302 1.57e-42 150
MS.gene043895.t1 AT5G65320 39.614 207 110 2 119 319 98 295 2.30e-42 148
MS.gene043895.t1 AT3G24140 39.819 221 117 3 103 312 177 392 1.30e-40 146
MS.gene043895.t1 AT3G24140 39.819 221 117 3 103 312 177 392 1.53e-40 147
MS.gene043895.t1 AT2G46810 40.097 207 94 5 114 312 112 296 5.98e-40 142
MS.gene043895.t1 AT2G46810 40.097 207 94 5 114 312 172 356 2.56e-39 142
MS.gene043895.t1 AT2G46810 40.097 207 94 5 114 312 184 368 2.71e-39 142
MS.gene043895.t1 AT3G61950 38.942 208 98 6 112 312 116 301 2.56e-38 138
MS.gene043895.t1 AT3G61950 38.942 208 98 6 112 312 167 352 1.03e-37 138
MS.gene043895.t1 AT3G61950 39.655 174 78 4 112 279 116 268 6.85e-36 131
MS.gene043895.t1 AT5G46690 44.175 206 82 6 113 292 78 276 1.12e-35 130
MS.gene043895.t1 AT5G65320 39.572 187 98 2 119 299 98 275 1.60e-35 130
MS.gene043895.t1 AT2G46810 41.618 173 73 3 114 279 112 263 2.91e-35 130
MS.gene043895.t1 AT3G61950 39.655 174 78 4 112 279 167 319 4.48e-35 130
MS.gene043895.t1 AT3G06120 33.871 186 106 3 123 298 1 179 1.47e-28 109
MS.gene043895.t1 AT5G53210 58.730 63 26 0 121 183 100 162 2.97e-19 87.8
MS.gene043895.t1 AT5G53210 58.730 63 26 0 121 183 100 162 3.36e-19 87.4
MS.gene043895.t1 AT3G61950 65.116 43 15 0 112 154 167 209 1.22e-12 66.6
MS.gene043895.t1 AT3G61950 65.116 43 15 0 112 154 167 209 1.22e-12 66.6

Find 64 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACAATATCCTTTCAAAT+TGG 0.190211 5.3:-51190369 MS.gene043895:CDS
GGAGGAAGAGTGGAAGTTTC+AGG 0.205757 5.3:+51190295 None:intergenic
TGCCTCCTTCTTATGCAAAA+AGG 0.226402 5.3:-51190099 MS.gene043895:CDS
CATGTTTCCTCAATACTCTA+TGG 0.258942 5.3:-51189605 MS.gene043895:CDS
CATCGACACTTGAAACATTA+AGG 0.276141 5.3:+51189404 None:intergenic
TCACAATATCCTTTCAAATT+GGG 0.367011 5.3:-51190368 MS.gene043895:CDS
AGGTCAAATAATGGCCTTAG+AGG 0.371011 5.3:-51190548 None:intergenic
TGAGATATCACGTAGAATTC+AGG 0.378692 5.3:-51187206 MS.gene043895:CDS
CATTGGTCTTTAACATTTGA+AGG 0.384395 5.3:+51190334 None:intergenic
GTTGTTGGGATTCAAAATCT+TGG 0.395613 5.3:-51189442 MS.gene043895:CDS
ACTTGGAGTGGTTTCAACTA+AGG 0.406246 5.3:+51190471 None:intergenic
ATGTTTCCTCAATACTCTAT+GGG 0.408818 5.3:-51189604 MS.gene043895:CDS
CGGTGCAATTAACTTCTTGA+AGG 0.418841 5.3:-51189740 MS.gene043895:CDS
AGGGGCTATGGTTGTTGTGG+TGG 0.426444 5.3:+51190258 None:intergenic
CCACTCCAAGTGAAGGATCT+TGG 0.429067 5.3:-51190459 MS.gene043895:CDS
CAGGTTATGAAGATGGTTGT+TGG 0.441455 5.3:-51189457 MS.gene043895:CDS
AGGTTATGAAGATGGTTGTT+GGG 0.442208 5.3:-51189456 MS.gene043895:CDS
CCAAGATCCTTCACTTGGAG+TGG 0.454095 5.3:+51190459 None:intergenic
CTGTAAATCAATGGATCTTG+TGG 0.471914 5.3:+51190514 None:intergenic
GGCAGATATAGAAGTGACTT+TGG 0.474900 5.3:-51189527 MS.gene043895:CDS
TGGCTCCAAGATCCTTCACT+TGG 0.493996 5.3:+51190454 None:intergenic
TGTTGTGGTGGATGCAAAAG+TGG 0.496117 5.3:+51190270 None:intergenic
AATTAATAATAGGTAGAAGA+AGG 0.501607 5.3:-51187274 MS.gene043895:intron
TTTGCTCCGAGGAGGGGCTA+TGG 0.508521 5.3:+51190246 None:intergenic
GCCACGTGACTGATTATTGT+TGG 0.510765 5.3:+51189552 None:intergenic
GTCGTCGTTTGCTCCGAGGA+GGG 0.510974 5.3:+51190239 None:intergenic
CTGCAATGTGAGTCATCCTC+TGG 0.511278 5.3:+51190179 None:intergenic
TGCATAAGAAGGAGGCATCA+AGG 0.514555 5.3:+51190105 None:intergenic
TCTTTGCAACTGTAAATCAA+TGG 0.515148 5.3:+51190505 None:intergenic
GGTGATCAAGCGTCAATAGT+TGG 0.522208 5.3:-51189763 MS.gene043895:CDS
CCTTGTCTCGGTTAGTGCTA+AGG 0.528899 5.3:-51189374 MS.gene043895:intron
AAGGAGGCATCAAGGATTTG+AGG 0.530586 5.3:+51190113 None:intergenic
AAAAGTGGAAGGAGGAAGAG+TGG 0.533377 5.3:+51190285 None:intergenic
ACATAATCTACAACTCATGA+AGG 0.534004 5.3:-51189710 MS.gene043895:CDS
CTTCAAATGTTAAAGACCAA+TGG 0.535334 5.3:-51190333 MS.gene043895:CDS
TTGTTTGGCAACCGTAGTTG+TGG 0.536558 5.3:+51190434 None:intergenic
ATTAATAATAGGTAGAAGAA+GGG 0.541316 5.3:-51187273 MS.gene043895:intron
GTGAAGAGTGTGAATTCCAT+TGG 0.541764 5.3:+51190317 None:intergenic
CAACTACTGAACACAGTGGA+TGG 0.542124 5.3:-51187247 MS.gene043895:CDS
GTGACTGATTATTGTTGGTA+GGG 0.542663 5.3:+51189557 None:intergenic
AAGAAGAATCCCAATTTGAA+AGG 0.545406 5.3:+51190359 None:intergenic
CGTGACTGATTATTGTTGGT+AGG 0.554504 5.3:+51189556 None:intergenic
CGATGATAATGTCCTTGTCT+CGG 0.558306 5.3:-51189386 MS.gene043895:CDS
CAATAATCAGTCACGTGGCA+TGG 0.563392 5.3:-51189548 MS.gene043895:CDS
ACAAGGACAGGTTATGAAGA+TGG 0.569307 5.3:-51189464 MS.gene043895:CDS
CAACAACCATAGCCCCTCCT+CGG 0.583230 5.3:-51190252 MS.gene043895:CDS
CGTCGTCGTTTGCTCCGAGG+AGG 0.588542 5.3:+51190238 None:intergenic
TCGTCGTTTGCTCCGAGGAG+GGG 0.595510 5.3:+51190240 None:intergenic
GTTGAAACCACTCCAAGTGA+AGG 0.604132 5.3:-51190466 MS.gene043895:CDS
GGGTAGCACGTGATGTTCTG+AGG 0.605537 5.3:+51189577 None:intergenic
AGGAGGGGCTATGGTTGTTG+TGG 0.609496 5.3:+51190255 None:intergenic
CCTTAGCACTAACCGAGACA+AGG 0.614421 5.3:+51189374 None:intergenic
GGTGCACCCATAGAGTATTG+AGG 0.621516 5.3:+51189598 None:intergenic
GGATCTTGGAGCCACAACTA+CGG 0.621648 5.3:-51190445 MS.gene043895:CDS
GTGGTGGATGCAAAAGTGGA+AGG 0.632533 5.3:+51190274 None:intergenic
AGGAGGAAATCGAGAGCCAG+AGG 0.636953 5.3:-51190195 MS.gene043895:CDS
CATAATCTACAACTCATGAA+GGG 0.646610 5.3:-51189709 MS.gene043895:CDS
GATATCACGTAGAATTCAGG+TGG 0.646782 5.3:-51187203 MS.gene043895:CDS
GATCAAGCGTCAATAGTTGG+CGG 0.662112 5.3:-51189760 MS.gene043895:CDS
GCGCGTCGTCGTTTGCTCCG+AGG 0.664657 5.3:+51190235 None:intergenic
GTGGATGCAAAAGTGGAAGG+AGG 0.667144 5.3:+51190277 None:intergenic
ACCAACAATAATCAGTCACG+TGG 0.703433 5.3:-51189553 MS.gene043895:CDS
TCAAGGATTTGAGGACATCG+AGG 0.738437 5.3:+51190122 None:intergenic
GTGTCAACTACTGAACACAG+TGG 0.768612 5.3:-51187251 MS.gene043895:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTTTTAAATTTTA+GGG + chr5.3:51190204-51190223 None:intergenic 0.0%
!!! TTATTTATTTTTTAAATTTT+AGG + chr5.3:51190205-51190224 None:intergenic 0.0%
!! TATAATTTAAACAAGTAATA+TGG + chr5.3:51190345-51190364 None:intergenic 10.0%
!! TATATATTGGAATTAATAAT+AGG - chr5.3:51190437-51190456 MS.gene043895:CDS 10.0%
!!! TGAAAATTTTGATTTTTTTT+TGG + chr5.3:51187907-51187926 None:intergenic 10.0%
!!! TTATATTTTTTTTTGACAAA+AGG - chr5.3:51190405-51190424 MS.gene043895:CDS 10.0%
!!! TTTTTATCTTCTTAATAATT+TGG + chr5.3:51189785-51189804 None:intergenic 10.0%
!! AAGGTTACTAATTTATATAT+TGG - chr5.3:51190424-51190443 MS.gene043895:CDS 15.0%
!! TAAGAATAAGAAATAAAAAG+TGG + chr5.3:51189137-51189156 None:intergenic 15.0%
!! TATTAAGAAGATAAAAATTC+AGG - chr5.3:51189788-51189807 MS.gene043895:intron 15.0%
!! AACTTCATAAATATAGTATG+TGG - chr5.3:51188605-51188624 MS.gene043895:intron 20.0%
!! AATAAGAAATAAAAAGTGGT+GGG + chr5.3:51189133-51189152 None:intergenic 20.0%
!! AATTAATAATAGGTAGAAGA+AGG - chr5.3:51190447-51190466 MS.gene043895:CDS 20.0%
!! ATGTGTTATAAAATTGTTGT+TGG + chr5.3:51187852-51187871 None:intergenic 20.0%
!! ATTAATAATAGGTAGAAGAA+GGG - chr5.3:51190448-51190467 MS.gene043895:CDS 20.0%
!! TATAAGCTAAATAAACATGT+CGG + chr5.3:51188959-51188978 None:intergenic 20.0%
!!! ATATCACTTTGCTATTTTTT+GGG - chr5.3:51190164-51190183 MS.gene043895:CDS 20.0%
!!! ATTTTTGTTGAGAAAATTGT+TGG + chr5.3:51188561-51188580 None:intergenic 20.0%
!!! GAAAAAAAAATCACGAATTT+TGG - chr5.3:51189710-51189729 MS.gene043895:CDS 20.0%
!!! GAAAATAGTGAAAAACATTT+TGG - chr5.3:51190367-51190386 MS.gene043895:CDS 20.0%
!!! TATATCACTTTGCTATTTTT+TGG - chr5.3:51190163-51190182 MS.gene043895:CDS 20.0%
!!! TATTGAATAATTTTTGCCAT+TGG + chr5.3:51189000-51189019 None:intergenic 20.0%
!!! TATTTATGAAGTTTTCACTA+CGG + chr5.3:51188598-51188617 None:intergenic 20.0%
!!! TGTGTTATAAAATTGTTGTT+GGG + chr5.3:51187851-51187870 None:intergenic 20.0%
!!! TTAGTCTTTGATTAGTAAAA+TGG + chr5.3:51189595-51189614 None:intergenic 20.0%
! AAATTCAATACTATGCCATT+TGG - chr5.3:51188662-51188681 MS.gene043895:intron 25.0%
! AACATGAAAAACTCAGTAAA+AGG + chr5.3:51188102-51188121 None:intergenic 25.0%
! AATAAAAACATTTACCTGCA+AGG - chr5.3:51190228-51190247 MS.gene043895:CDS 25.0%
! AATCAAGTGATAAAAAGACT+TGG - chr5.3:51188452-51188471 MS.gene043895:intron 25.0%
! ATAAAATTCACTGTCAACAA+GGG - chr5.3:51188426-51188445 MS.gene043895:intron 25.0%
! ATAAGAAATAAAAAGTGGTG+GGG + chr5.3:51189132-51189151 None:intergenic 25.0%
! ATAATGTTGAAAAAACGACA+AGG - chr5.3:51188240-51188259 MS.gene043895:intron 25.0%
! ATATGGTTTAAAAATTGACG+TGG + chr5.3:51190328-51190347 None:intergenic 25.0%
! ATCACAATATCCTTTCAAAT+TGG - chr5.3:51187352-51187371 MS.gene043895:intron 25.0%
! GAATAAGAAATAAAAAGTGG+TGG + chr5.3:51189134-51189153 None:intergenic 25.0%
! TATAAAATTCACTGTCAACA+AGG - chr5.3:51188425-51188444 MS.gene043895:intron 25.0%
! TCACAATATCCTTTCAAATT+GGG - chr5.3:51187353-51187372 MS.gene043895:intron 25.0%
! TGTTTCATAAACACAATTGT+TGG - chr5.3:51187702-51187721 MS.gene043895:intron 25.0%
! TTTCTCTATAAATAGAGACT+TGG + chr5.3:51189694-51189713 None:intergenic 25.0%
!! ATGGGTAATTAGAAGAATTT+TGG - chr5.3:51189544-51189563 MS.gene043895:CDS 25.0%
!! ATTTAGAGTTGTTGAATGAT+TGG + chr5.3:51190026-51190045 None:intergenic 25.0%
!! CACGTAATTTATCTAGAATA+TGG - chr5.3:51189360-51189379 MS.gene043895:intron 25.0%
!! GTGTTATAAAATTGTTGTTG+GGG + chr5.3:51187850-51187869 None:intergenic 25.0%
!! GTGTTGAATTGATTGTTATT+GGG - chr5.3:51189567-51189586 MS.gene043895:CDS 25.0%
!! TGGGTAATTAGAAGAATTTT+GGG - chr5.3:51189545-51189564 MS.gene043895:CDS 25.0%
!!! ATCTACTTTAAAATCACAGA+TGG + chr5.3:51188818-51188837 None:intergenic 25.0%
!!! TATCACTTTGCTATTTTTTG+GGG - chr5.3:51190165-51190184 MS.gene043895:CDS 25.0%
AAGAAGAATCCCAATTTGAA+AGG + chr5.3:51187365-51187384 None:intergenic 30.0%
ACATAATCTACAACTCATGA+AGG - chr5.3:51188011-51188030 MS.gene043895:intron 30.0%
AGAGAAATATTCGATTGAGA+GGG - chr5.3:51188519-51188538 MS.gene043895:intron 30.0%
ATGAAAAACTCAGTAAAAGG+TGG + chr5.3:51188099-51188118 None:intergenic 30.0%
ATGTTTCCTCAATACTCTAT+GGG - chr5.3:51188117-51188136 MS.gene043895:intron 30.0%
ATTGAAAAAGTGGATGTTGA+AGG + chr5.3:51189024-51189043 None:intergenic 30.0%
ATTTCTGTTATGCAACAACA+TGG + chr5.3:51190098-51190117 None:intergenic 30.0%
CATAATCTACAACTCATGAA+GGG - chr5.3:51188012-51188031 MS.gene043895:intron 30.0%
CTCGTGTAATATTTACCAAA+TGG + chr5.3:51188680-51188699 None:intergenic 30.0%
CTCGTTAAATAAATGATGAG+TGG - chr5.3:51188476-51188495 MS.gene043895:intron 30.0%
CTTCAAATGTTAAAGACCAA+TGG - chr5.3:51187388-51187407 MS.gene043895:intron 30.0%
GAATATGGATGAAAGTTGTT+TGG - chr5.3:51189375-51189394 MS.gene043895:CDS 30.0%
TAGAGAAATATTCGATTGAG+AGG - chr5.3:51188518-51188537 MS.gene043895:intron 30.0%
TCTTTGCAACTGTAAATCAA+TGG + chr5.3:51187219-51187238 None:intergenic 30.0%
TGAACCACATGTAGAATTTA+GGG + chr5.3:51187931-51187950 None:intergenic 30.0%
TTAAGAGAGAGAAAATGATG+TGG + chr5.3:51189057-51189076 None:intergenic 30.0%
TTGAACCACATGTAGAATTT+AGG + chr5.3:51187932-51187951 None:intergenic 30.0%
TTGAATGAAAACTATTGGAG+TGG + chr5.3:51189102-51189121 None:intergenic 30.0%
! ACTTTGATGTCTTATGGTTT+TGG - chr5.3:51187773-51187792 MS.gene043895:intron 30.0%
! ATAATTTTTGCCATTGGACA+TGG + chr5.3:51188994-51189013 None:intergenic 30.0%
! ATTACCCTTTTTGCATAAGA+AGG + chr5.3:51187630-51187649 None:intergenic 30.0%
! CTTTGATGTCTTATGGTTTT+GGG - chr5.3:51187774-51187793 MS.gene043895:intron 30.0%
! GGTGTTGAATTGATTGTTAT+TGG - chr5.3:51189566-51189585 MS.gene043895:CDS 30.0%
! TGGGATTTTTGTAGCTAAAT+GGG - chr5.3:51189526-51189545 MS.gene043895:CDS 30.0%
! TTGGGATTTTTGTAGCTAAA+TGG - chr5.3:51189525-51189544 MS.gene043895:CDS 30.0%
! TTTGAGGCATAACCAAAATT+AGG - chr5.3:51189420-51189439 MS.gene043895:CDS 30.0%
! TTTGGTTGGGAAATTGATTT+GGG - chr5.3:51189457-51189476 MS.gene043895:CDS 30.0%
!! ATTTGGGTGTTGATAATTGT+TGG - chr5.3:51189506-51189525 MS.gene043895:CDS 30.0%
!! CATTGGTCTTTAACATTTGA+AGG + chr5.3:51187390-51187409 None:intergenic 30.0%
!! TTTGGGTGTTGATAATTGTT+GGG - chr5.3:51189507-51189526 MS.gene043895:CDS 30.0%
!! TTTTGGTTGGGAAATTGATT+TGG - chr5.3:51189456-51189475 MS.gene043895:CDS 30.0%
!!! ATGTTTTGAGGATTTTGGTT+GGG - chr5.3:51189444-51189463 MS.gene043895:CDS 30.0%
AAAATTGTTGGAGACATGGT+AGG + chr5.3:51188549-51188568 None:intergenic 35.0%
AACAGAGAATAAGGTGAACT+AGG - chr5.3:51190278-51190297 MS.gene043895:CDS 35.0%
ACAGAGAATAAGGTGAACTA+GGG - chr5.3:51190279-51190298 MS.gene043895:CDS 35.0%
AGGTTATGAAGATGGTTGTT+GGG - chr5.3:51188265-51188284 MS.gene043895:intron 35.0%
AGTAATAAGACCATGTCCAA+TGG - chr5.3:51188981-51189000 MS.gene043895:intron 35.0%
ATTTGACGTTTGCATCATGA+CGG - chr5.3:51188926-51188945 MS.gene043895:intron 35.0%
CAAGTGTATAGTGATATACC+AGG + chr5.3:51190142-51190161 None:intergenic 35.0%
CATCGACACTTGAAACATTA+AGG + chr5.3:51188320-51188339 None:intergenic 35.0%
CATGTTTCCTCAATACTCTA+TGG - chr5.3:51188116-51188135 MS.gene043895:intron 35.0%
CTACATGTGGTTCAAAAACA+GGG - chr5.3:51187937-51187956 MS.gene043895:intron 35.0%
CTGGTATATCACTATACACT+TGG - chr5.3:51190140-51190159 MS.gene043895:CDS 35.0%
CTGTAAATCAATGGATCTTG+TGG + chr5.3:51187210-51187229 None:intergenic 35.0%
GAGAAATATTCGATTGAGAG+GGG - chr5.3:51188520-51188539 MS.gene043895:intron 35.0%
GAGACTTGGATCATTTGATT+TGG + chr5.3:51189680-51189699 None:intergenic 35.0%
GAGGAAACTTTGATGTCTTA+TGG - chr5.3:51187767-51187786 MS.gene043895:intron 35.0%
GTAGGCTTCAACTTATTGAA+TGG - chr5.3:51189956-51189975 MS.gene043895:intron 35.0%
GTGACTGATTATTGTTGGTA+GGG + chr5.3:51188167-51188186 None:intergenic 35.0%
GTTGTTGCATAACAGAAATC+TGG - chr5.3:51190099-51190118 MS.gene043895:CDS 35.0%
GTTGTTGGGATTCAAAATCT+TGG - chr5.3:51188279-51188298 MS.gene043895:intron 35.0%
TCAACCCTAAATTCTACATG+TGG - chr5.3:51187924-51187943 MS.gene043895:intron 35.0%
TCTACATGTGGTTCAAAAAC+AGG - chr5.3:51187936-51187955 MS.gene043895:intron 35.0%
TGAGAAAATTGTTGGAGACA+TGG + chr5.3:51188553-51188572 None:intergenic 35.0%
TGAGATATCACGTAGAATTC+AGG - chr5.3:51190515-51190534 MS.gene043895:CDS 35.0%
TGGAAAAACTATAGCCTCTA+AGG + chr5.3:51187190-51187209 None:intergenic 35.0%
TGGTTTAAAAATTGACGTGG+AGG + chr5.3:51190325-51190344 None:intergenic 35.0%
TGTTGAATGATTGGAGAAGA+GGG + chr5.3:51190017-51190036 None:intergenic 35.0%
TTGCATAACAGAAATCTGGA+GGG - chr5.3:51190103-51190122 MS.gene043895:CDS 35.0%
TTGTTGAATGATTGGAGAAG+AGG + chr5.3:51190018-51190037 None:intergenic 35.0%
! AAAAATTGACGTGGAGGTTT+TGG + chr5.3:51190319-51190338 None:intergenic 35.0%
! AAATAAAAAGTGGTGGGGTA+GGG + chr5.3:51189127-51189146 None:intergenic 35.0%
! AGAAAATGATGTGGAGTGTT+GGG + chr5.3:51189048-51189067 None:intergenic 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG + chr5.3:51189034-51189053 None:intergenic 35.0%
! ATGAAAGTTGTTTGGAACAG+AGG - chr5.3:51189383-51189402 MS.gene043895:CDS 35.0%
! CCAAAATTAGGCATGTTTTG+AGG - chr5.3:51189432-51189451 MS.gene043895:CDS 35.0%
! CCTCAAAACATGCCTAATTT+TGG + chr5.3:51189435-51189454 None:intergenic 35.0%
! GATCTTCTTCGTCTTTTGTT+TGG + chr5.3:51187305-51187324 None:intergenic 35.0%
! GTTGGTTGGGAAATTGATTT+GGG - chr5.3:51189490-51189509 MS.gene043895:CDS 35.0%
! TGTTGGTTGGGAAATTGATT+TGG - chr5.3:51189489-51189508 MS.gene043895:CDS 35.0%
!! GGGTGTTGAATGAAAACTAT+TGG + chr5.3:51189107-51189126 None:intergenic 35.0%
!!! CATGTTTTGAGGATTTTGGT+TGG - chr5.3:51189443-51189462 MS.gene043895:CDS 35.0%
!!! CCTCAATTTTTAGTCGATCT+GGG + chr5.3:51187751-51187770 None:intergenic 35.0%
!!! GGAAATTGATTTGGGTTTTG+AGG - chr5.3:51189465-51189484 MS.gene043895:CDS 35.0%
!!! TAGGCATGTTTTGAGGATTT+TGG - chr5.3:51189439-51189458 MS.gene043895:CDS 35.0%
!!! TCCTCAATTTTTAGTCGATC+TGG + chr5.3:51187752-51187771 None:intergenic 35.0%
ACAAGGACAGGTTATGAAGA+TGG - chr5.3:51188257-51188276 MS.gene043895:intron 40.0%
ACCAACAATAATCAGTCACG+TGG - chr5.3:51188168-51188187 MS.gene043895:intron 40.0%
ACCTTATTCTCTGTTCGAAC+CGG + chr5.3:51190273-51190292 None:intergenic 40.0%
ACTTGGAGTGGTTTCAACTA+AGG + chr5.3:51187253-51187272 None:intergenic 40.0%
ATAACAGAAATCTGGAGGGA+AGG - chr5.3:51190107-51190126 MS.gene043895:CDS 40.0%
ATTGAAGATGAGATGGAGGA+GGG + chr5.3:51189993-51190012 None:intergenic 40.0%
CAGGTTATGAAGATGGTTGT+TGG - chr5.3:51188264-51188283 MS.gene043895:intron 40.0%
CCCAGATCGACTAAAAATTG+AGG - chr5.3:51187748-51187767 MS.gene043895:intron 40.0%
CGGTGCAATTAACTTCTTGA+AGG - chr5.3:51187981-51188000 MS.gene043895:intron 40.0%
CGGTTAGTGCTAAGGTAAAT+TGG - chr5.3:51188355-51188374 MS.gene043895:intron 40.0%
CGTGACTGATTATTGTTGGT+AGG + chr5.3:51188168-51188187 None:intergenic 40.0%
GAGAAAATGATGTGGAGTGT+TGG + chr5.3:51189049-51189068 None:intergenic 40.0%
GATATCACGTAGAATTCAGG+TGG - chr5.3:51190518-51190537 MS.gene043895:CDS 40.0%
GCCTCCTTCTTATGCAAAAA+GGG - chr5.3:51187623-51187642 MS.gene043895:intron 40.0%
GGATGGGTGATTGAAATTTG+AGG - chr5.3:51189404-51189423 MS.gene043895:CDS 40.0%
GGCAGATATAGAAGTGACTT+TGG - chr5.3:51188194-51188213 MS.gene043895:intron 40.0%
GTTGAAAAAACGACAAGGAC+AGG - chr5.3:51188245-51188264 MS.gene043895:intron 40.0%
GTTGCATAACAGAAATCTGG+AGG - chr5.3:51190102-51190121 MS.gene043895:CDS 40.0%
TATTGAAGATGAGATGGAGG+AGG + chr5.3:51189994-51190013 None:intergenic 40.0%
TGCCTCCTTCTTATGCAAAA+AGG - chr5.3:51187622-51187641 MS.gene043895:intron 40.0%
TGTGAATGCAAAAAACGAGG+AGG - chr5.3:51187509-51187528 MS.gene043895:intron 40.0%
TTGAATAAAGCTGTGACACG+TGG + chr5.3:51189831-51189850 None:intergenic 40.0%
! AAGTTGTTTGGAACAGAGGA+TGG - chr5.3:51189387-51189406 MS.gene043895:CDS 40.0%
! ACCCTTTTTGCATAAGAAGG+AGG + chr5.3:51187627-51187646 None:intergenic 40.0%
! AGTTGTTTGGAACAGAGGAT+GGG - chr5.3:51189388-51189407 MS.gene043895:CDS 40.0%
! CAATAAGTTGAAGCCTACAC+CGG + chr5.3:51189954-51189973 None:intergenic 40.0%
! CGATGATAATGTCCTTGTCT+CGG - chr5.3:51188335-51188354 MS.gene043895:intron 40.0%
! GAAATAAAAAGTGGTGGGGT+AGG + chr5.3:51189128-51189147 None:intergenic 40.0%
! GTGAAGAGTGTGAATTCCAT+TGG + chr5.3:51187407-51187426 None:intergenic 40.0%
!! AGAGGGTATTGAAGATGAGA+TGG + chr5.3:51190000-51190019 None:intergenic 40.0%
!!! GATTTGGGTTTTGAGGATGT+TGG - chr5.3:51189472-51189491 MS.gene043895:CDS 40.0%
AAAAGTGGAAGGAGGAAGAG+TGG + chr5.3:51187439-51187458 None:intergenic 45.0%
ACACCTTAGACCAAGTCCAA+TGG + chr5.3:51190064-51190083 None:intergenic 45.0%
ACCTTAGACCAAGTCCAATG+GGG + chr5.3:51190062-51190081 None:intergenic 45.0%
CAACTACTGAACACAGTGGA+TGG - chr5.3:51190474-51190493 MS.gene043895:CDS 45.0%
CAATAATCAGTCACGTGGCA+TGG - chr5.3:51188173-51188192 MS.gene043895:intron 45.0%
CACCTACTCAGAAAACCTAC+CGG - chr5.3:51190251-51190270 MS.gene043895:CDS 45.0%
CACCTTAGACCAAGTCCAAT+GGG + chr5.3:51190063-51190082 None:intergenic 45.0%
CGCTGTGAATGCAAAAAACG+AGG - chr5.3:51187506-51187525 MS.gene043895:intron 45.0%
GATCAAGCGTCAATAGTTGG+CGG - chr5.3:51187961-51187980 MS.gene043895:intron 45.0%
GCCACGTGACTGATTATTGT+TGG + chr5.3:51188172-51188191 None:intergenic 45.0%
GGTGATCAAGCGTCAATAGT+TGG - chr5.3:51187958-51187977 MS.gene043895:intron 45.0%
GTGTCAACTACTGAACACAG+TGG - chr5.3:51190470-51190489 MS.gene043895:CDS 45.0%
GTTGAAACCACTCCAAGTGA+AGG - chr5.3:51187255-51187274 MS.gene043895:CDS 45.0%
TACCCTTTCAATACCCCCAT+TGG - chr5.3:51190045-51190064 MS.gene043895:intron 45.0%
TATTCTCTGTTCGAACCGGT+AGG + chr5.3:51190269-51190288 None:intergenic 45.0%
TCAAGGATTTGAGGACATCG+AGG + chr5.3:51187602-51187621 None:intergenic 45.0%
TCCTAGACGTTTAACGCATC+CGG - chr5.3:51187812-51187831 MS.gene043895:intron 45.0%
TTCAATACCCCCATTGGACT+TGG - chr5.3:51190051-51190070 MS.gene043895:intron 45.0%
TTGTTTGGCAACCGTAGTTG+TGG + chr5.3:51187290-51187309 None:intergenic 45.0%
! AACCGGTAGGTTTTCTGAGT+AGG + chr5.3:51190256-51190275 None:intergenic 45.0%
! AATTGTTGTTGGGGAGTCTG+AGG + chr5.3:51187841-51187860 None:intergenic 45.0%
!! AAGGAGGCATCAAGGATTTG+AGG + chr5.3:51187611-51187630 None:intergenic 45.0%
!! ACCGGTTCGAACAGAGAATA+AGG - chr5.3:51190269-51190288 MS.gene043895:CDS 45.0%
!! AGTCCAATGGGGGTATTGAA+AGG + chr5.3:51190051-51190070 None:intergenic 45.0%
!! GGGTATTGAAGATGAGATGG+AGG + chr5.3:51189997-51190016 None:intergenic 45.0%
!! GTCCAATGGGGGTATTGAAA+GGG + chr5.3:51190050-51190069 None:intergenic 45.0%
!! TGCATAAGAAGGAGGCATCA+AGG + chr5.3:51187619-51187638 None:intergenic 45.0%
!! TGTTGTGGTGGATGCAAAAG+TGG + chr5.3:51187454-51187473 None:intergenic 45.0%
!!! GGGTTTTGAGGATGTTGGTT+GGG - chr5.3:51189477-51189496 MS.gene043895:CDS 45.0%
!!! TATGGTTTTGGGTACGAGTG+TGG - chr5.3:51187785-51187804 MS.gene043895:intron 45.0%
!!! TGGGTTTTGAGGATGTTGGT+TGG - chr5.3:51189476-51189495 MS.gene043895:CDS 45.0%
CCAAGATCCTTCACTTGGAG+TGG + chr5.3:51187265-51187284 None:intergenic 50.0%
CCACTCCAAGTGAAGGATCT+TGG - chr5.3:51187262-51187281 MS.gene043895:CDS 50.0%
CCTAGACGTTTAACGCATCC+GGG - chr5.3:51187813-51187832 MS.gene043895:intron 50.0%
CCTTAGACCAAGTCCAATGG+GGG + chr5.3:51190061-51190080 None:intergenic 50.0%
CCTTAGCACTAACCGAGACA+AGG + chr5.3:51188350-51188369 None:intergenic 50.0%
CCTTGTCTCGGTTAGTGCTA+AGG - chr5.3:51188347-51188366 MS.gene043895:intron 50.0%
CTGCAATGTGAGTCATCCTC+TGG + chr5.3:51187545-51187564 None:intergenic 50.0%
GGAGGAAGAGTGGAAGTTTC+AGG + chr5.3:51187429-51187448 None:intergenic 50.0%
GGATCTTGGAGCCACAACTA+CGG - chr5.3:51187276-51187295 MS.gene043895:intron 50.0%
GTGGATGCAAAAGTGGAAGG+AGG + chr5.3:51187447-51187466 None:intergenic 50.0%
TGGCTCCAAGATCCTTCACT+TGG + chr5.3:51187270-51187289 None:intergenic 50.0%
TTTCTGAGTAGGTGCCTTGC+AGG + chr5.3:51190245-51190264 None:intergenic 50.0%
! GAGGGAAGGTGTATATCACC+TGG - chr5.3:51190121-51190140 MS.gene043895:CDS 50.0%
!! CTGTGACACGTGGTGTTATC+TGG + chr5.3:51189821-51189840 None:intergenic 50.0%
!! GACACGTGGTGTTATCTGGT+TGG + chr5.3:51189817-51189836 None:intergenic 50.0%
!! GGTGCACCCATAGAGTATTG+AGG + chr5.3:51188126-51188145 None:intergenic 50.0%
!! GTGGTGGATGCAAAAGTGGA+AGG + chr5.3:51187450-51187469 None:intergenic 50.0%
AGGAGGAAATCGAGAGCCAG+AGG - chr5.3:51187526-51187545 MS.gene043895:intron 55.0%
AGGAGGGGCTATGGTTGTTG+TGG + chr5.3:51187469-51187488 None:intergenic 55.0%
AGGGGCTATGGTTGTTGTGG+TGG + chr5.3:51187466-51187485 None:intergenic 55.0%
CAACAACCATAGCCCCTCCT+CGG - chr5.3:51187469-51187488 MS.gene043895:intron 55.0%
CCCGGATGCGTTAAACGTCT+AGG + chr5.3:51187816-51187835 None:intergenic 55.0%
GGGTAGCACGTGATGTTCTG+AGG + chr5.3:51188147-51188166 None:intergenic 55.0%
! CCCCCATTGGACTTGGTCTA+AGG - chr5.3:51190058-51190077 MS.gene043895:intron 55.0%
GTCGTCGTTTGCTCCGAGGA+GGG + chr5.3:51187485-51187504 None:intergenic 60.0%
TCGTCGTTTGCTCCGAGGAG+GGG + chr5.3:51187484-51187503 None:intergenic 60.0%
TTTGCTCCGAGGAGGGGCTA+TGG + chr5.3:51187478-51187497 None:intergenic 60.0%
! GTGTACCACACGCACCGACA+GGG + chr5.3:51189892-51189911 None:intergenic 60.0%
AAACGCGCCGCGTGGCAATC+CGG - chr5.3:51189932-51189951 MS.gene043895:intron 65.0%
ACGAACAGAAACGCGCCGCG+TGG - chr5.3:51189924-51189943 MS.gene043895:intron 65.0%
CGCGTGGGACTCTGCAAACG+CGG + chr5.3:51189869-51189888 None:intergenic 65.0%
CGGCGCGTTTCTGTTCGTCC+AGG + chr5.3:51189922-51189941 None:intergenic 65.0%
CGTCGTCGTTTGCTCCGAGG+AGG + chr5.3:51187486-51187505 None:intergenic 65.0%
GCCTACACCGGATTGCCACG+CGG + chr5.3:51189942-51189961 None:intergenic 65.0%
GTGTGGTACACGCGCTTGCC+TGG - chr5.3:51189901-51189920 MS.gene043895:intron 65.0%
GTTGGGGAGTCTGAGGAGCC+CGG + chr5.3:51187834-51187853 None:intergenic 65.0%
! CGTGTACCACACGCACCGAC+AGG + chr5.3:51189893-51189912 None:intergenic 65.0%
CAGAGTCCCACGCGCCCTGT+CGG - chr5.3:51189875-51189894 MS.gene043895:intron 70.0%
GCCGCGTGGCAATCCGGTGT+AGG - chr5.3:51189938-51189957 MS.gene043895:intron 70.0%
GCGCGTCGTCGTTTGCTCCG+AGG + chr5.3:51187489-51187508 None:intergenic 70.0%
ACGCGCCCTGTCGGTGCGTG+TGG - chr5.3:51189884-51189903 MS.gene043895:intron 75.0%
! ACACGCACCGACAGGGCGCG+TGG + chr5.3:51189885-51189904 None:intergenic 75.0%
! CACGCACCGACAGGGCGCGT+GGG + chr5.3:51189884-51189903 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 51187183 51190560 51187183 ID=MS.gene043895
chr5.3 mRNA 51187183 51190560 51187183 ID=MS.gene043895.t1;Parent=MS.gene043895
chr5.3 exon 51190099 51190560 51190099 ID=MS.gene043895.t1.exon1;Parent=MS.gene043895.t1
chr5.3 CDS 51190099 51190560 51190099 ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1
chr5.3 exon 51189375 51189785 51189375 ID=MS.gene043895.t1.exon2;Parent=MS.gene043895.t1
chr5.3 CDS 51189375 51189785 51189375 ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1
chr5.3 exon 51187183 51187284 51187183 ID=MS.gene043895.t1.exon3;Parent=MS.gene043895.t1
chr5.3 CDS 51187183 51187284 51187183 ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1
Gene Sequence

>MS.gene043895

ATGGCCTTAGAGGCTATAGTTTTTCCACAAGATCCATTGATTTACAGTTGCAAAGACTACTTGTACTCCTTAGTTGAAACCACTCCAAGTGAAGGATCTTGGAGCCACAACTACGGTTGCCAAACAAAAGACGAAGAAGATCTTTTTAAAATCATCAGTAATAGCTTAGATCACAATATCCTTTCAAATTGGGATTCTTCTTCTCCTTCAAATGTTAAAGACCAATGGAATTCACACTCTTCACCTGAAACTTCCACTCTTCCTCCTTCCACTTTTGCATCCACCACAACAACCATAGCCCCTCCTCGGAGCAAACGACGACGCGCTGTGAATGCAAAAAACGAGGAGGAAATCGAGAGCCAGAGGATGACTCACATTGCAGTTGAGCGCAATCGAAGAAAACAGATGAATGAGTACCTCGATGTCCTCAAATCCTTGATGCCTCCTTCTTATGCAAAAAGGGTAATTTTATACTTTGTTTATGTGTCAAAATGTTCATGTTTAATGTCTTTGTATCATTGTTTCATAAACACAATTGTTGGAAATCAAGTGCAAGTGATTATGTCCCAGATCGACTAAAAATTGAGGAAACTTTGATGTCTTATGGTTTTGGGTACGAGTGTGGTGTCTCCTAGACGTTTAACGCATCCGGGCTCCTCAGACTCCCCAACAACAATTTTATAACACATGATATCAATTTTGTACTTTGTAATAGTTAGAACCAAAAAAAAATCAAAATTTTCAACCCTAAATTCTACATGTGGTTCAAAAACAGGGTGATCAAGCGTCAATAGTTGGCGGTGCAATTAACTTCTTGAAGGAGCTAGAACATAATCTACAACTCATGAAGGGACAAAAGAAAATAAACAAAGAAGCTCATGAAAATAGTTTCATTACTTGTTCTTGTTCATCACCACCTTTTACTGAGTTTTTCATGTTTCCTCAATACTCTATGGGTGCACCTCAGAACATCACGTGCTACCCTACCAACAATAATCAGTCACGTGGCATGGCAGATATAGAAGTGACTTTGGTTGATAGTCATACAAATATAAATATAATGTTGAAAAAACGACAAGGACAGGTTATGAAGATGGTTGTTGGGATTCAAAATCTTGGCTTCAACATTCTACACCTTAATGTTTCAAGTGTCGATGATAATGTCCTTGTCTCGGTTAGTGCTAAGGTAAATTGGTTTACATTTTGTTTGATGCTAATTTATGTCTTATTCGCATTCTAAAATATAAAATTCACTGTCAACAAGGGTTAAATCAAGTGATAAAAAGACTTGGACTCGTTAAATAAATGATGAGTGGTTGTTTAAACTCATGTGCATAGAGAAATATTCGATTGAGAGGGGAAACCTACCATGTCTCCAACAATTTTCTCAACAAAAATTAATCACTATTAAACCGTAGTGAAAACTTCATAAATATAGTATGTGGTAAAAAAAAAAAAAAATACTACTATTACTATATAAAATTCAATACTATGCCATTTGGTAAATATTACACGAGTTAAATTCATGTTAACATCAATGTTGATATTTCAATATGATATTAAATAATGAGTTTAATTTTTGTACATTATTAATGTAAAAATATTTATTTACACTGAAGAGATCAAAACTATCCATCTGTGATTTTAAAGTAGATAAAAATATAAAAGTCAAATATTCTAAATGATTTTGCAGATAATTGATTGATAGTATAAAACTTTGATTAGTATTATTTGCAGCAAACGATTTGACGTTTGCATCATGACGGTCGCGTACCGACATGTTTATTTAGCTTATAAGAGTAATAAGACCATGTCCAATGGCAAAAATTATTCAATAACCTTCAACATCCACTTTTTCAATTCCCAACACTCCACATCATTTTCTCTCTCTTAATTCAACACTCATTCAATTTTTACCACTCCAATAGTTTTCATTCAACACCCTACCCCACCACTTTTTATTTCTTATTCTTATTTAATTTTTGTCTTTATAATTGCATAAAATTATAATTATCGATTATAATTAAATTAAAATAATAAAAATAATTTTTTTAAAAAAACAATATTTTTTTAAATAATTTATTTTTATTTTCTTAACTTAAAATGCAATACAACAAACTAAGCACGCGACACACGAATAGCTTAAAATGCAAGACAACAAACAAGCACACAACACACACGTAATTTATCTAGAATATGGATGAAAGTTGTTTGGAACAGAGGATGGGTGATTGAAATTTGAGGCATAACCAAAATTAGGCATGTTTTGAGGATTTTGGTTGGGAAATTGATTTGGGTTTTGAGGATGTTGGTTGGGAAATTGATTTGGGTGTTGATAATTGTTGGGATTTTTGTAGCTAAATGGGTAATTAGAAGAATTTTGGGTGTTGAATTGATTGTTATTGGGATCCATTTTACTAATCAAAGACTAAAACTTCAAAAGAAATGCTAATAATAAGATTAAGAGAGTGAAAAACTTGATTTTTTTCTGTGTCCAAATCAAATGATCCAAGTCTCTATTTATAGAGAAAAAAAAATCACGAATTTTGGTAAAAAAATAAAAAAAATAAAAAAATTATTTGCAGTGAAATAATTGAGTCCAAATTATTAAGAAGATAAAAATTCAGGCAGCCAACCAGATAACACCACGTGTCACAGCTTTATTCAAAAGCTTCTTCTCTCTCCGCGTTTGCAGAGTCCCACGCGCCCTGTCGGTGCGTGTGGTACACGCGCTTGCCTGGACGAACAGAAACGCGCCGCGTGGCAATCCGGTGTAGGCTTCAACTTATTGAATGGCTTCATCACTTCCCTCCTCCATCTCATCTTCAATACCCTCTTCTCCAATCATTCAACAACTCTAAATACCCTTTCAATACCCCCATTGGACTTGGTCTAAGGTGTGTGTCAAATTTCCATGTTGTTGCATAACAGAAATCTGGAGGGAAGGTGTATATCACCTGGTATATCACTATACACTTGGTATATCACTTTGCTATTTTTTGGGGATAAACAACATTTCCCTAAAATTTAAAAAATAAATAAATAAATAAAAACATTTACCTGCAAGGCACCTACTCAGAAAACCTACCGGTTCGAACAGAGAATAAGGTGAACTAGGGTGACTTTCAAAAAACCAAAACCTCCACGTCAATTTTTAAACCATATTACTTGTTTAAATTATATTGAAAATAGTGAAAAACATTTTGGTTACTAATTTTTTTTTTATATTTTTTTTTGACAAAAGGTTACTAATTTATATATTGGAATTAATAATAGGTAGAAGAAGGGTGTCAACTACTGAACACAGTGGATGGAATTGCAGCTGCAGTGAATGAGATATCACGTAGAATTCAGGTGGAAGATGCTGCTTTGACCTGA

Protein sequence

>MS.gene043895.t1

MALEAIVFPQDPLIYSCKDYLYSLVETTPSEGSWSHNYGCQTKDEEDLFKIISNSLDHNILSNWDSSSPSNVKDQWNSHSSPETSTLPPSTFASTTTTIAPPRSKRRRAVNAKNEEEIESQRMTHIAVERNRRKQMNEYLDVLKSLMPPSYAKRGDQASIVGGAINFLKELEHNLQLMKGQKKINKEAHENSFITCSCSSPPFTEFFMFPQYSMGAPQNITCYPTNNNQSRGMADIEVTLVDSHTNINIMLKKRQGQVMKMVVGIQNLGFNILHLNVSSVDDNVLVSVSAKVEEGCQLLNTVDGIAAAVNEISRRIQVEDAALT