AlfalfaGEDB | MS.gene043895

M. sativa cultivar XinJiangDaYe / MS.gene043895

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043895.t1	XP_003615193.2	74.7	324	58	2	1	324	1	300	2.00E-123	452.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043895.t1	Q9C7T4	49.9	345	122	10	1	321	1	318	2.4e-56	220.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043895.t1	G7KAJ7	74.7	324	58	2	1	324	1	300	1.5e-123	452.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene043895.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043895.t1	MTR_5g064950	79.012	324	44	2	1	324	1	300	0.0	520
MS.gene043895.t1	MTR_5g064950	79.452	292	37	1	1	292	1	269	2.87e-171	478
MS.gene043895.t1	MTR_3g099620	53.097	339	119	13	1	321	1	317	7.88e-100	297
MS.gene043895.t1	MTR_7g113830	44.512	328	145	12	1	321	14	311	5.24e-76	236
MS.gene043895.t1	MTR_1g082480	40.469	341	160	9	1	319	14	333	6.47e-67	213
MS.gene043895.t1	MTR_8g066770	52.336	214	93	5	113	324	104	310	2.89e-66	211
MS.gene043895.t1	MTR_1g082480	40.323	310	151	7	1	292	14	307	7.81e-59	192
MS.gene043895.t1	MTR_8g024210	44.660	206	91	3	112	312	170	357	2.98e-46	160
MS.gene043895.t1	MTR_0194s0050	41.860	215	115	5	105	312	166	377	4.51e-44	155
MS.gene043895.t1	MTR_2g022280	38.636	176	104	2	123	298	1	172	8.15e-34	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043895.t1	AT1G72210	47.813	343	128	11	1	319	1	316	1.12e-86	263
MS.gene043895.t1	AT1G72210	45.886	316	121	10	1	292	1	290	3.33e-74	231
MS.gene043895.t1	AT1G22490	45.181	332	140	12	1	319	1	303	3.97e-72	226
MS.gene043895.t1	AT1G22490	43.279	305	132	11	1	292	1	277	2.87e-59	193
MS.gene043895.t1	AT4G01460	39.906	213	111	3	113	319	105	306	1.42e-42	149
MS.gene043895.t1	AT4G01460	39.906	213	111	3	113	319	105	306	1.42e-42	149
MS.gene043895.t1	AT5G46690	44.538	238	88	8	113	319	78	302	1.57e-42	150
MS.gene043895.t1	AT5G65320	39.614	207	110	2	119	319	98	295	2.30e-42	148
MS.gene043895.t1	AT3G24140	39.819	221	117	3	103	312	177	392	1.30e-40	146
MS.gene043895.t1	AT3G24140	39.819	221	117	3	103	312	177	392	1.53e-40	147

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Find 64 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGAAGGAGGAAGAG+TGG	0.533377	5.3:+51190285	None:intergenic
AAGAAGAATCCCAATTTGAA+AGG	0.545406	5.3:+51190359	None:intergenic
AAGGAGGCATCAAGGATTTG+AGG	0.530586	5.3:+51190113	None:intergenic
AATTAATAATAGGTAGAAGA+AGG	0.501607	5.3:-51187274	MS.gene043895:intron
ACAAGGACAGGTTATGAAGA+TGG	0.569307	5.3:-51189464	MS.gene043895:CDS
ACATAATCTACAACTCATGA+AGG	0.534004	5.3:-51189710	MS.gene043895:CDS
ACCAACAATAATCAGTCACG+TGG	0.703433	5.3:-51189553	MS.gene043895:CDS
ACTTGGAGTGGTTTCAACTA+AGG	0.406246	5.3:+51190471	None:intergenic
AGGAGGAAATCGAGAGCCAG+AGG	0.636953	5.3:-51190195	MS.gene043895:CDS
AGGAGGGGCTATGGTTGTTG+TGG	0.609496	5.3:+51190255	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAATCCCAATTTGAA+AGG	+	chr5.3:51187365-51187384	None:intergenic	30.0%
ACATAATCTACAACTCATGA+AGG	-	chr5.3:51188011-51188030	MS.gene043895:intron	30.0%
AGAGAAATATTCGATTGAGA+GGG	-	chr5.3:51188519-51188538	MS.gene043895:intron	30.0%
ATGAAAAACTCAGTAAAAGG+TGG	+	chr5.3:51188099-51188118	None:intergenic	30.0%
ATGTTTCCTCAATACTCTAT+GGG	-	chr5.3:51188117-51188136	MS.gene043895:intron	30.0%
ATTGAAAAAGTGGATGTTGA+AGG	+	chr5.3:51189024-51189043	None:intergenic	30.0%
ATTTCTGTTATGCAACAACA+TGG	+	chr5.3:51190098-51190117	None:intergenic	30.0%
CATAATCTACAACTCATGAA+GGG	-	chr5.3:51188012-51188031	MS.gene043895:intron	30.0%
CTCGTGTAATATTTACCAAA+TGG	+	chr5.3:51188680-51188699	None:intergenic	30.0%
CTCGTTAAATAAATGATGAG+TGG	-	chr5.3:51188476-51188495	MS.gene043895:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	51187183	51190560	51187183	ID=MS.gene043895
chr5.3	mRNA	51187183	51190560	51187183	ID=MS.gene043895.t1;Parent=MS.gene043895
chr5.3	exon	51190099	51190560	51190099	ID=MS.gene043895.t1.exon1;Parent=MS.gene043895.t1
chr5.3	CDS	51190099	51190560	51190099	ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1
chr5.3	exon	51189375	51189785	51189375	ID=MS.gene043895.t1.exon2;Parent=MS.gene043895.t1
chr5.3	CDS	51189375	51189785	51189375	ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1
chr5.3	exon	51187183	51187284	51187183	ID=MS.gene043895.t1.exon3;Parent=MS.gene043895.t1
chr5.3	CDS	51187183	51187284	51187183	ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1

Gene Sequence

>MS.gene043895

ATGGCCTTAGAGGCTATAGTTTTTCCACAAGATCCATTGATTTACAGTTGCAAAGACTACTTGTACTCCTTAGTTGAAACCACTCCAAGTGAAGGATCTTGGAGCCACAACTACGGTTGCCAAACAAAAGACGAAGAAGATCTTTTTAAAATCATCAGTAATAGCTTAGATCACAATATCCTTTCAAATTGGGATTCTTCTTCTCCTTCAAATGTTAAAGACCAATGGAATTCACACTCTTCACCTGAAACTTCCACTCTTCCTCCTTCCACTTTTGCATCCACCACAACAACCATAGCCCCTCCTCGGAGCAAACGACGACGCGCTGTGAATGCAAAAAACGAGGAGGAAATCGAGAGCCAGAGGATGACTCACATTGCAGTTGAGCGCAATCGAAGAAAACAGATGAATGAGTACCTCGATGTCCTCAAATCCTTGATGCCTCCTTCTTATGCAAAAAGGGTAATTTTATACTTTGTTTATGTGTCAAAATGTTCATGTTTAATGTCTTTGTATCATTGTTTCATAAACACAATTGTTGGAAATCAAGTGCAAGTGATTATGTCCCAGATCGACTAAAAATTGAGGAAACTTTGATGTCTTATGGTTTTGGGTACGAGTGTGGTGTCTCCTAGACGTTTAACGCATCCGGGCTCCTCAGACTCCCCAACAACAATTTTATAACACATGATATCAATTTTGTACTTTGTAATAGTTAGAACCAAAAAAAAATCAAAATTTTCAACCCTAAATTCTACATGTGGTTCAAAAACAGGGTGATCAAGCGTCAATAGTTGGCGGTGCAATTAACTTCTTGAAGGAGCTAGAACATAATCTACAACTCATGAAGGGACAAAAGAAAATAAACAAAGAAGCTCATGAAAATAGTTTCATTACTTGTTCTTGTTCATCACCACCTTTTACTGAGTTTTTCATGTTTCCTCAATACTCTATGGGTGCACCTCAGAACATCACGTGCTACCCTACCAACAATAATCAGTCACGTGGCATGGCAGATATAGAAGTGACTTTGGTTGATAGTCATACAAATATAAATATAATGTTGAAAAAACGACAAGGACAGGTTATGAAGATGGTTGTTGGGATTCAAAATCTTGGCTTCAACATTCTACACCTTAATGTTTCAAGTGTCGATGATAATGTCCTTGTCTCGGTTAGTGCTAAGGTAAATTGGTTTACATTTTGTTTGATGCTAATTTATGTCTTATTCGCATTCTAAAATATAAAATTCACTGTCAACAAGGGTTAAATCAAGTGATAAAAAGACTTGGACTCGTTAAATAAATGATGAGTGGTTGTTTAAACTCATGTGCATAGAGAAATATTCGATTGAGAGGGGAAACCTACCATGTCTCCAACAATTTTCTCAACAAAAATTAATCACTATTAAACCGTAGTGAAAACTTCATAAATATAGTATGTGGTAAAAAAAAAAAAAAATACTACTATTACTATATAAAATTCAATACTATGCCATTTGGTAAATATTACACGAGTTAAATTCATGTTAACATCAATGTTGATATTTCAATATGATATTAAATAATGAGTTTAATTTTTGTACATTATTAATGTAAAAATATTTATTTACACTGAAGAGATCAAAACTATCCATCTGTGATTTTAAAGTAGATAAAAATATAAAAGTCAAATATTCTAAATGATTTTGCAGATAATTGATTGATAGTATAAAACTTTGATTAGTATTATTTGCAGCAAACGATTTGACGTTTGCATCATGACGGTCGCGTACCGACATGTTTATTTAGCTTATAAGAGTAATAAGACCATGTCCAATGGCAAAAATTATTCAATAACCTTCAACATCCACTTTTTCAATTCCCAACACTCCACATCATTTTCTCTCTCTTAATTCAACACTCATTCAATTTTTACCACTCCAATAGTTTTCATTCAACACCCTACCCCACCACTTTTTATTTCTTATTCTTATTTAATTTTTGTCTTTATAATTGCATAAAATTATAATTATCGATTATAATTAAATTAAAATAATAAAAATAATTTTTTTAAAAAAACAATATTTTTTTAAATAATTTATTTTTATTTTCTTAACTTAAAATGCAATACAACAAACTAAGCACGCGACACACGAATAGCTTAAAATGCAAGACAACAAACAAGCACACAACACACACGTAATTTATCTAGAATATGGATGAAAGTTGTTTGGAACAGAGGATGGGTGATTGAAATTTGAGGCATAACCAAAATTAGGCATGTTTTGAGGATTTTGGTTGGGAAATTGATTTGGGTTTTGAGGATGTTGGTTGGGAAATTGATTTGGGTGTTGATAATTGTTGGGATTTTTGTAGCTAAATGGGTAATTAGAAGAATTTTGGGTGTTGAATTGATTGTTATTGGGATCCATTTTACTAATCAAAGACTAAAACTTCAAAAGAAATGCTAATAATAAGATTAAGAGAGTGAAAAACTTGATTTTTTTCTGTGTCCAAATCAAATGATCCAAGTCTCTATTTATAGAGAAAAAAAAATCACGAATTTTGGTAAAAAAATAAAAAAAATAAAAAAATTATTTGCAGTGAAATAATTGAGTCCAAATTATTAAGAAGATAAAAATTCAGGCAGCCAACCAGATAACACCACGTGTCACAGCTTTATTCAAAAGCTTCTTCTCTCTCCGCGTTTGCAGAGTCCCACGCGCCCTGTCGGTGCGTGTGGTACACGCGCTTGCCTGGACGAACAGAAACGCGCCGCGTGGCAATCCGGTGTAGGCTTCAACTTATTGAATGGCTTCATCACTTCCCTCCTCCATCTCATCTTCAATACCCTCTTCTCCAATCATTCAACAACTCTAAATACCCTTTCAATACCCCCATTGGACTTGGTCTAAGGTGTGTGTCAAATTTCCATGTTGTTGCATAACAGAAATCTGGAGGGAAGGTGTATATCACCTGGTATATCACTATACACTTGGTATATCACTTTGCTATTTTTTGGGGATAAACAACATTTCCCTAAAATTTAAAAAATAAATAAATAAATAAAAACATTTACCTGCAAGGCACCTACTCAGAAAACCTACCGGTTCGAACAGAGAATAAGGTGAACTAGGGTGACTTTCAAAAAACCAAAACCTCCACGTCAATTTTTAAACCATATTACTTGTTTAAATTATATTGAAAATAGTGAAAAACATTTTGGTTACTAATTTTTTTTTTATATTTTTTTTTGACAAAAGGTTACTAATTTATATATTGGAATTAATAATAGGTAGAAGAAGGGTGTCAACTACTGAACACAGTGGATGGAATTGCAGCTGCAGTGAATGAGATATCACGTAGAATTCAGGTGGAAGATGCTGCTTTGACCTGA

Protein sequence

>MS.gene043895.t1

MALEAIVFPQDPLIYSCKDYLYSLVETTPSEGSWSHNYGCQTKDEEDLFKIISNSLDHNILSNWDSSSPSNVKDQWNSHSSPETSTLPPSTFASTTTTIAPPRSKRRRAVNAKNEEEIESQRMTHIAVERNRRKQMNEYLDVLKSLMPPSYAKRGDQASIVGGAINFLKELEHNLQLMKGQKKINKEAHENSFITCSCSSPPFTEFFMFPQYSMGAPQNITCYPTNNNQSRGMADIEVTLVDSHTNINIMLKKRQGQVMKMVVGIQNLGFNILHLNVSSVDDNVLVSVSAKVEEGCQLLNTVDGIAAAVNEISRRIQVEDAALT