Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043895.t1 | XP_003615193.2 | 74.7 | 324 | 58 | 2 | 1 | 324 | 1 | 300 | 2.00E-123 | 452.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043895.t1 | Q9C7T4 | 49.9 | 345 | 122 | 10 | 1 | 321 | 1 | 318 | 2.4e-56 | 220.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043895.t1 | G7KAJ7 | 74.7 | 324 | 58 | 2 | 1 | 324 | 1 | 300 | 1.5e-123 | 452.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene043895.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043895.t1 | MTR_5g064950 | 79.012 | 324 | 44 | 2 | 1 | 324 | 1 | 300 | 0.0 | 520 |
MS.gene043895.t1 | MTR_5g064950 | 79.452 | 292 | 37 | 1 | 1 | 292 | 1 | 269 | 2.87e-171 | 478 |
MS.gene043895.t1 | MTR_3g099620 | 53.097 | 339 | 119 | 13 | 1 | 321 | 1 | 317 | 7.88e-100 | 297 |
MS.gene043895.t1 | MTR_7g113830 | 44.512 | 328 | 145 | 12 | 1 | 321 | 14 | 311 | 5.24e-76 | 236 |
MS.gene043895.t1 | MTR_1g082480 | 40.469 | 341 | 160 | 9 | 1 | 319 | 14 | 333 | 6.47e-67 | 213 |
MS.gene043895.t1 | MTR_8g066770 | 52.336 | 214 | 93 | 5 | 113 | 324 | 104 | 310 | 2.89e-66 | 211 |
MS.gene043895.t1 | MTR_1g082480 | 40.323 | 310 | 151 | 7 | 1 | 292 | 14 | 307 | 7.81e-59 | 192 |
MS.gene043895.t1 | MTR_8g024210 | 44.660 | 206 | 91 | 3 | 112 | 312 | 170 | 357 | 2.98e-46 | 160 |
MS.gene043895.t1 | MTR_0194s0050 | 41.860 | 215 | 115 | 5 | 105 | 312 | 166 | 377 | 4.51e-44 | 155 |
MS.gene043895.t1 | MTR_2g022280 | 38.636 | 176 | 104 | 2 | 123 | 298 | 1 | 172 | 8.15e-34 | 123 |
MS.gene043895.t1 | MTR_3g090850 | 30.201 | 298 | 162 | 7 | 46 | 298 | 19 | 315 | 3.43e-31 | 120 |
MS.gene043895.t1 | MTR_1g028470 | 30.147 | 272 | 152 | 7 | 46 | 298 | 27 | 279 | 6.49e-26 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043895.t1 | AT1G72210 | 47.813 | 343 | 128 | 11 | 1 | 319 | 1 | 316 | 1.12e-86 | 263 |
MS.gene043895.t1 | AT1G72210 | 45.886 | 316 | 121 | 10 | 1 | 292 | 1 | 290 | 3.33e-74 | 231 |
MS.gene043895.t1 | AT1G22490 | 45.181 | 332 | 140 | 12 | 1 | 319 | 1 | 303 | 3.97e-72 | 226 |
MS.gene043895.t1 | AT1G22490 | 43.279 | 305 | 132 | 11 | 1 | 292 | 1 | 277 | 2.87e-59 | 193 |
MS.gene043895.t1 | AT4G01460 | 39.906 | 213 | 111 | 3 | 113 | 319 | 105 | 306 | 1.42e-42 | 149 |
MS.gene043895.t1 | AT4G01460 | 39.906 | 213 | 111 | 3 | 113 | 319 | 105 | 306 | 1.42e-42 | 149 |
MS.gene043895.t1 | AT5G46690 | 44.538 | 238 | 88 | 8 | 113 | 319 | 78 | 302 | 1.57e-42 | 150 |
MS.gene043895.t1 | AT5G65320 | 39.614 | 207 | 110 | 2 | 119 | 319 | 98 | 295 | 2.30e-42 | 148 |
MS.gene043895.t1 | AT3G24140 | 39.819 | 221 | 117 | 3 | 103 | 312 | 177 | 392 | 1.30e-40 | 146 |
MS.gene043895.t1 | AT3G24140 | 39.819 | 221 | 117 | 3 | 103 | 312 | 177 | 392 | 1.53e-40 | 147 |
MS.gene043895.t1 | AT2G46810 | 40.097 | 207 | 94 | 5 | 114 | 312 | 112 | 296 | 5.98e-40 | 142 |
MS.gene043895.t1 | AT2G46810 | 40.097 | 207 | 94 | 5 | 114 | 312 | 172 | 356 | 2.56e-39 | 142 |
MS.gene043895.t1 | AT2G46810 | 40.097 | 207 | 94 | 5 | 114 | 312 | 184 | 368 | 2.71e-39 | 142 |
MS.gene043895.t1 | AT3G61950 | 38.942 | 208 | 98 | 6 | 112 | 312 | 116 | 301 | 2.56e-38 | 138 |
MS.gene043895.t1 | AT3G61950 | 38.942 | 208 | 98 | 6 | 112 | 312 | 167 | 352 | 1.03e-37 | 138 |
MS.gene043895.t1 | AT3G61950 | 39.655 | 174 | 78 | 4 | 112 | 279 | 116 | 268 | 6.85e-36 | 131 |
MS.gene043895.t1 | AT5G46690 | 44.175 | 206 | 82 | 6 | 113 | 292 | 78 | 276 | 1.12e-35 | 130 |
MS.gene043895.t1 | AT5G65320 | 39.572 | 187 | 98 | 2 | 119 | 299 | 98 | 275 | 1.60e-35 | 130 |
MS.gene043895.t1 | AT2G46810 | 41.618 | 173 | 73 | 3 | 114 | 279 | 112 | 263 | 2.91e-35 | 130 |
MS.gene043895.t1 | AT3G61950 | 39.655 | 174 | 78 | 4 | 112 | 279 | 167 | 319 | 4.48e-35 | 130 |
MS.gene043895.t1 | AT3G06120 | 33.871 | 186 | 106 | 3 | 123 | 298 | 1 | 179 | 1.47e-28 | 109 |
MS.gene043895.t1 | AT5G53210 | 58.730 | 63 | 26 | 0 | 121 | 183 | 100 | 162 | 2.97e-19 | 87.8 |
MS.gene043895.t1 | AT5G53210 | 58.730 | 63 | 26 | 0 | 121 | 183 | 100 | 162 | 3.36e-19 | 87.4 |
MS.gene043895.t1 | AT3G61950 | 65.116 | 43 | 15 | 0 | 112 | 154 | 167 | 209 | 1.22e-12 | 66.6 |
MS.gene043895.t1 | AT3G61950 | 65.116 | 43 | 15 | 0 | 112 | 154 | 167 | 209 | 1.22e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCACAATATCCTTTCAAAT+TGG | 0.190211 | 5.3:-51190369 | MS.gene043895:CDS |
GGAGGAAGAGTGGAAGTTTC+AGG | 0.205757 | 5.3:+51190295 | None:intergenic |
TGCCTCCTTCTTATGCAAAA+AGG | 0.226402 | 5.3:-51190099 | MS.gene043895:CDS |
CATGTTTCCTCAATACTCTA+TGG | 0.258942 | 5.3:-51189605 | MS.gene043895:CDS |
CATCGACACTTGAAACATTA+AGG | 0.276141 | 5.3:+51189404 | None:intergenic |
TCACAATATCCTTTCAAATT+GGG | 0.367011 | 5.3:-51190368 | MS.gene043895:CDS |
AGGTCAAATAATGGCCTTAG+AGG | 0.371011 | 5.3:-51190548 | None:intergenic |
TGAGATATCACGTAGAATTC+AGG | 0.378692 | 5.3:-51187206 | MS.gene043895:CDS |
CATTGGTCTTTAACATTTGA+AGG | 0.384395 | 5.3:+51190334 | None:intergenic |
GTTGTTGGGATTCAAAATCT+TGG | 0.395613 | 5.3:-51189442 | MS.gene043895:CDS |
ACTTGGAGTGGTTTCAACTA+AGG | 0.406246 | 5.3:+51190471 | None:intergenic |
ATGTTTCCTCAATACTCTAT+GGG | 0.408818 | 5.3:-51189604 | MS.gene043895:CDS |
CGGTGCAATTAACTTCTTGA+AGG | 0.418841 | 5.3:-51189740 | MS.gene043895:CDS |
AGGGGCTATGGTTGTTGTGG+TGG | 0.426444 | 5.3:+51190258 | None:intergenic |
CCACTCCAAGTGAAGGATCT+TGG | 0.429067 | 5.3:-51190459 | MS.gene043895:CDS |
CAGGTTATGAAGATGGTTGT+TGG | 0.441455 | 5.3:-51189457 | MS.gene043895:CDS |
AGGTTATGAAGATGGTTGTT+GGG | 0.442208 | 5.3:-51189456 | MS.gene043895:CDS |
CCAAGATCCTTCACTTGGAG+TGG | 0.454095 | 5.3:+51190459 | None:intergenic |
CTGTAAATCAATGGATCTTG+TGG | 0.471914 | 5.3:+51190514 | None:intergenic |
GGCAGATATAGAAGTGACTT+TGG | 0.474900 | 5.3:-51189527 | MS.gene043895:CDS |
TGGCTCCAAGATCCTTCACT+TGG | 0.493996 | 5.3:+51190454 | None:intergenic |
TGTTGTGGTGGATGCAAAAG+TGG | 0.496117 | 5.3:+51190270 | None:intergenic |
AATTAATAATAGGTAGAAGA+AGG | 0.501607 | 5.3:-51187274 | MS.gene043895:intron |
TTTGCTCCGAGGAGGGGCTA+TGG | 0.508521 | 5.3:+51190246 | None:intergenic |
GCCACGTGACTGATTATTGT+TGG | 0.510765 | 5.3:+51189552 | None:intergenic |
GTCGTCGTTTGCTCCGAGGA+GGG | 0.510974 | 5.3:+51190239 | None:intergenic |
CTGCAATGTGAGTCATCCTC+TGG | 0.511278 | 5.3:+51190179 | None:intergenic |
TGCATAAGAAGGAGGCATCA+AGG | 0.514555 | 5.3:+51190105 | None:intergenic |
TCTTTGCAACTGTAAATCAA+TGG | 0.515148 | 5.3:+51190505 | None:intergenic |
GGTGATCAAGCGTCAATAGT+TGG | 0.522208 | 5.3:-51189763 | MS.gene043895:CDS |
CCTTGTCTCGGTTAGTGCTA+AGG | 0.528899 | 5.3:-51189374 | MS.gene043895:intron |
AAGGAGGCATCAAGGATTTG+AGG | 0.530586 | 5.3:+51190113 | None:intergenic |
AAAAGTGGAAGGAGGAAGAG+TGG | 0.533377 | 5.3:+51190285 | None:intergenic |
ACATAATCTACAACTCATGA+AGG | 0.534004 | 5.3:-51189710 | MS.gene043895:CDS |
CTTCAAATGTTAAAGACCAA+TGG | 0.535334 | 5.3:-51190333 | MS.gene043895:CDS |
TTGTTTGGCAACCGTAGTTG+TGG | 0.536558 | 5.3:+51190434 | None:intergenic |
ATTAATAATAGGTAGAAGAA+GGG | 0.541316 | 5.3:-51187273 | MS.gene043895:intron |
GTGAAGAGTGTGAATTCCAT+TGG | 0.541764 | 5.3:+51190317 | None:intergenic |
CAACTACTGAACACAGTGGA+TGG | 0.542124 | 5.3:-51187247 | MS.gene043895:CDS |
GTGACTGATTATTGTTGGTA+GGG | 0.542663 | 5.3:+51189557 | None:intergenic |
AAGAAGAATCCCAATTTGAA+AGG | 0.545406 | 5.3:+51190359 | None:intergenic |
CGTGACTGATTATTGTTGGT+AGG | 0.554504 | 5.3:+51189556 | None:intergenic |
CGATGATAATGTCCTTGTCT+CGG | 0.558306 | 5.3:-51189386 | MS.gene043895:CDS |
CAATAATCAGTCACGTGGCA+TGG | 0.563392 | 5.3:-51189548 | MS.gene043895:CDS |
ACAAGGACAGGTTATGAAGA+TGG | 0.569307 | 5.3:-51189464 | MS.gene043895:CDS |
CAACAACCATAGCCCCTCCT+CGG | 0.583230 | 5.3:-51190252 | MS.gene043895:CDS |
CGTCGTCGTTTGCTCCGAGG+AGG | 0.588542 | 5.3:+51190238 | None:intergenic |
TCGTCGTTTGCTCCGAGGAG+GGG | 0.595510 | 5.3:+51190240 | None:intergenic |
GTTGAAACCACTCCAAGTGA+AGG | 0.604132 | 5.3:-51190466 | MS.gene043895:CDS |
GGGTAGCACGTGATGTTCTG+AGG | 0.605537 | 5.3:+51189577 | None:intergenic |
AGGAGGGGCTATGGTTGTTG+TGG | 0.609496 | 5.3:+51190255 | None:intergenic |
CCTTAGCACTAACCGAGACA+AGG | 0.614421 | 5.3:+51189374 | None:intergenic |
GGTGCACCCATAGAGTATTG+AGG | 0.621516 | 5.3:+51189598 | None:intergenic |
GGATCTTGGAGCCACAACTA+CGG | 0.621648 | 5.3:-51190445 | MS.gene043895:CDS |
GTGGTGGATGCAAAAGTGGA+AGG | 0.632533 | 5.3:+51190274 | None:intergenic |
AGGAGGAAATCGAGAGCCAG+AGG | 0.636953 | 5.3:-51190195 | MS.gene043895:CDS |
CATAATCTACAACTCATGAA+GGG | 0.646610 | 5.3:-51189709 | MS.gene043895:CDS |
GATATCACGTAGAATTCAGG+TGG | 0.646782 | 5.3:-51187203 | MS.gene043895:CDS |
GATCAAGCGTCAATAGTTGG+CGG | 0.662112 | 5.3:-51189760 | MS.gene043895:CDS |
GCGCGTCGTCGTTTGCTCCG+AGG | 0.664657 | 5.3:+51190235 | None:intergenic |
GTGGATGCAAAAGTGGAAGG+AGG | 0.667144 | 5.3:+51190277 | None:intergenic |
ACCAACAATAATCAGTCACG+TGG | 0.703433 | 5.3:-51189553 | MS.gene043895:CDS |
TCAAGGATTTGAGGACATCG+AGG | 0.738437 | 5.3:+51190122 | None:intergenic |
GTGTCAACTACTGAACACAG+TGG | 0.768612 | 5.3:-51187251 | MS.gene043895:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTATTTTTTAAATTTTA+GGG | + | chr5.3:51190204-51190223 | None:intergenic | 0.0% |
!!! | TTATTTATTTTTTAAATTTT+AGG | + | chr5.3:51190205-51190224 | None:intergenic | 0.0% |
!! | TATAATTTAAACAAGTAATA+TGG | + | chr5.3:51190345-51190364 | None:intergenic | 10.0% |
!! | TATATATTGGAATTAATAAT+AGG | - | chr5.3:51190437-51190456 | MS.gene043895:CDS | 10.0% |
!!! | TGAAAATTTTGATTTTTTTT+TGG | + | chr5.3:51187907-51187926 | None:intergenic | 10.0% |
!!! | TTATATTTTTTTTTGACAAA+AGG | - | chr5.3:51190405-51190424 | MS.gene043895:CDS | 10.0% |
!!! | TTTTTATCTTCTTAATAATT+TGG | + | chr5.3:51189785-51189804 | None:intergenic | 10.0% |
!! | AAGGTTACTAATTTATATAT+TGG | - | chr5.3:51190424-51190443 | MS.gene043895:CDS | 15.0% |
!! | TAAGAATAAGAAATAAAAAG+TGG | + | chr5.3:51189137-51189156 | None:intergenic | 15.0% |
!! | TATTAAGAAGATAAAAATTC+AGG | - | chr5.3:51189788-51189807 | MS.gene043895:intron | 15.0% |
!! | AACTTCATAAATATAGTATG+TGG | - | chr5.3:51188605-51188624 | MS.gene043895:intron | 20.0% |
!! | AATAAGAAATAAAAAGTGGT+GGG | + | chr5.3:51189133-51189152 | None:intergenic | 20.0% |
!! | AATTAATAATAGGTAGAAGA+AGG | - | chr5.3:51190447-51190466 | MS.gene043895:CDS | 20.0% |
!! | ATGTGTTATAAAATTGTTGT+TGG | + | chr5.3:51187852-51187871 | None:intergenic | 20.0% |
!! | ATTAATAATAGGTAGAAGAA+GGG | - | chr5.3:51190448-51190467 | MS.gene043895:CDS | 20.0% |
!! | TATAAGCTAAATAAACATGT+CGG | + | chr5.3:51188959-51188978 | None:intergenic | 20.0% |
!!! | ATATCACTTTGCTATTTTTT+GGG | - | chr5.3:51190164-51190183 | MS.gene043895:CDS | 20.0% |
!!! | ATTTTTGTTGAGAAAATTGT+TGG | + | chr5.3:51188561-51188580 | None:intergenic | 20.0% |
!!! | GAAAAAAAAATCACGAATTT+TGG | - | chr5.3:51189710-51189729 | MS.gene043895:CDS | 20.0% |
!!! | GAAAATAGTGAAAAACATTT+TGG | - | chr5.3:51190367-51190386 | MS.gene043895:CDS | 20.0% |
!!! | TATATCACTTTGCTATTTTT+TGG | - | chr5.3:51190163-51190182 | MS.gene043895:CDS | 20.0% |
!!! | TATTGAATAATTTTTGCCAT+TGG | + | chr5.3:51189000-51189019 | None:intergenic | 20.0% |
!!! | TATTTATGAAGTTTTCACTA+CGG | + | chr5.3:51188598-51188617 | None:intergenic | 20.0% |
!!! | TGTGTTATAAAATTGTTGTT+GGG | + | chr5.3:51187851-51187870 | None:intergenic | 20.0% |
!!! | TTAGTCTTTGATTAGTAAAA+TGG | + | chr5.3:51189595-51189614 | None:intergenic | 20.0% |
! | AAATTCAATACTATGCCATT+TGG | - | chr5.3:51188662-51188681 | MS.gene043895:intron | 25.0% |
! | AACATGAAAAACTCAGTAAA+AGG | + | chr5.3:51188102-51188121 | None:intergenic | 25.0% |
! | AATAAAAACATTTACCTGCA+AGG | - | chr5.3:51190228-51190247 | MS.gene043895:CDS | 25.0% |
! | AATCAAGTGATAAAAAGACT+TGG | - | chr5.3:51188452-51188471 | MS.gene043895:intron | 25.0% |
! | ATAAAATTCACTGTCAACAA+GGG | - | chr5.3:51188426-51188445 | MS.gene043895:intron | 25.0% |
! | ATAAGAAATAAAAAGTGGTG+GGG | + | chr5.3:51189132-51189151 | None:intergenic | 25.0% |
! | ATAATGTTGAAAAAACGACA+AGG | - | chr5.3:51188240-51188259 | MS.gene043895:intron | 25.0% |
! | ATATGGTTTAAAAATTGACG+TGG | + | chr5.3:51190328-51190347 | None:intergenic | 25.0% |
! | ATCACAATATCCTTTCAAAT+TGG | - | chr5.3:51187352-51187371 | MS.gene043895:intron | 25.0% |
! | GAATAAGAAATAAAAAGTGG+TGG | + | chr5.3:51189134-51189153 | None:intergenic | 25.0% |
! | TATAAAATTCACTGTCAACA+AGG | - | chr5.3:51188425-51188444 | MS.gene043895:intron | 25.0% |
! | TCACAATATCCTTTCAAATT+GGG | - | chr5.3:51187353-51187372 | MS.gene043895:intron | 25.0% |
! | TGTTTCATAAACACAATTGT+TGG | - | chr5.3:51187702-51187721 | MS.gene043895:intron | 25.0% |
! | TTTCTCTATAAATAGAGACT+TGG | + | chr5.3:51189694-51189713 | None:intergenic | 25.0% |
!! | ATGGGTAATTAGAAGAATTT+TGG | - | chr5.3:51189544-51189563 | MS.gene043895:CDS | 25.0% |
!! | ATTTAGAGTTGTTGAATGAT+TGG | + | chr5.3:51190026-51190045 | None:intergenic | 25.0% |
!! | CACGTAATTTATCTAGAATA+TGG | - | chr5.3:51189360-51189379 | MS.gene043895:intron | 25.0% |
!! | GTGTTATAAAATTGTTGTTG+GGG | + | chr5.3:51187850-51187869 | None:intergenic | 25.0% |
!! | GTGTTGAATTGATTGTTATT+GGG | - | chr5.3:51189567-51189586 | MS.gene043895:CDS | 25.0% |
!! | TGGGTAATTAGAAGAATTTT+GGG | - | chr5.3:51189545-51189564 | MS.gene043895:CDS | 25.0% |
!!! | ATCTACTTTAAAATCACAGA+TGG | + | chr5.3:51188818-51188837 | None:intergenic | 25.0% |
!!! | TATCACTTTGCTATTTTTTG+GGG | - | chr5.3:51190165-51190184 | MS.gene043895:CDS | 25.0% |
AAGAAGAATCCCAATTTGAA+AGG | + | chr5.3:51187365-51187384 | None:intergenic | 30.0% | |
ACATAATCTACAACTCATGA+AGG | - | chr5.3:51188011-51188030 | MS.gene043895:intron | 30.0% | |
AGAGAAATATTCGATTGAGA+GGG | - | chr5.3:51188519-51188538 | MS.gene043895:intron | 30.0% | |
ATGAAAAACTCAGTAAAAGG+TGG | + | chr5.3:51188099-51188118 | None:intergenic | 30.0% | |
ATGTTTCCTCAATACTCTAT+GGG | - | chr5.3:51188117-51188136 | MS.gene043895:intron | 30.0% | |
ATTGAAAAAGTGGATGTTGA+AGG | + | chr5.3:51189024-51189043 | None:intergenic | 30.0% | |
ATTTCTGTTATGCAACAACA+TGG | + | chr5.3:51190098-51190117 | None:intergenic | 30.0% | |
CATAATCTACAACTCATGAA+GGG | - | chr5.3:51188012-51188031 | MS.gene043895:intron | 30.0% | |
CTCGTGTAATATTTACCAAA+TGG | + | chr5.3:51188680-51188699 | None:intergenic | 30.0% | |
CTCGTTAAATAAATGATGAG+TGG | - | chr5.3:51188476-51188495 | MS.gene043895:intron | 30.0% | |
CTTCAAATGTTAAAGACCAA+TGG | - | chr5.3:51187388-51187407 | MS.gene043895:intron | 30.0% | |
GAATATGGATGAAAGTTGTT+TGG | - | chr5.3:51189375-51189394 | MS.gene043895:CDS | 30.0% | |
TAGAGAAATATTCGATTGAG+AGG | - | chr5.3:51188518-51188537 | MS.gene043895:intron | 30.0% | |
TCTTTGCAACTGTAAATCAA+TGG | + | chr5.3:51187219-51187238 | None:intergenic | 30.0% | |
TGAACCACATGTAGAATTTA+GGG | + | chr5.3:51187931-51187950 | None:intergenic | 30.0% | |
TTAAGAGAGAGAAAATGATG+TGG | + | chr5.3:51189057-51189076 | None:intergenic | 30.0% | |
TTGAACCACATGTAGAATTT+AGG | + | chr5.3:51187932-51187951 | None:intergenic | 30.0% | |
TTGAATGAAAACTATTGGAG+TGG | + | chr5.3:51189102-51189121 | None:intergenic | 30.0% | |
! | ACTTTGATGTCTTATGGTTT+TGG | - | chr5.3:51187773-51187792 | MS.gene043895:intron | 30.0% |
! | ATAATTTTTGCCATTGGACA+TGG | + | chr5.3:51188994-51189013 | None:intergenic | 30.0% |
! | ATTACCCTTTTTGCATAAGA+AGG | + | chr5.3:51187630-51187649 | None:intergenic | 30.0% |
! | CTTTGATGTCTTATGGTTTT+GGG | - | chr5.3:51187774-51187793 | MS.gene043895:intron | 30.0% |
! | GGTGTTGAATTGATTGTTAT+TGG | - | chr5.3:51189566-51189585 | MS.gene043895:CDS | 30.0% |
! | TGGGATTTTTGTAGCTAAAT+GGG | - | chr5.3:51189526-51189545 | MS.gene043895:CDS | 30.0% |
! | TTGGGATTTTTGTAGCTAAA+TGG | - | chr5.3:51189525-51189544 | MS.gene043895:CDS | 30.0% |
! | TTTGAGGCATAACCAAAATT+AGG | - | chr5.3:51189420-51189439 | MS.gene043895:CDS | 30.0% |
! | TTTGGTTGGGAAATTGATTT+GGG | - | chr5.3:51189457-51189476 | MS.gene043895:CDS | 30.0% |
!! | ATTTGGGTGTTGATAATTGT+TGG | - | chr5.3:51189506-51189525 | MS.gene043895:CDS | 30.0% |
!! | CATTGGTCTTTAACATTTGA+AGG | + | chr5.3:51187390-51187409 | None:intergenic | 30.0% |
!! | TTTGGGTGTTGATAATTGTT+GGG | - | chr5.3:51189507-51189526 | MS.gene043895:CDS | 30.0% |
!! | TTTTGGTTGGGAAATTGATT+TGG | - | chr5.3:51189456-51189475 | MS.gene043895:CDS | 30.0% |
!!! | ATGTTTTGAGGATTTTGGTT+GGG | - | chr5.3:51189444-51189463 | MS.gene043895:CDS | 30.0% |
AAAATTGTTGGAGACATGGT+AGG | + | chr5.3:51188549-51188568 | None:intergenic | 35.0% | |
AACAGAGAATAAGGTGAACT+AGG | - | chr5.3:51190278-51190297 | MS.gene043895:CDS | 35.0% | |
ACAGAGAATAAGGTGAACTA+GGG | - | chr5.3:51190279-51190298 | MS.gene043895:CDS | 35.0% | |
AGGTTATGAAGATGGTTGTT+GGG | - | chr5.3:51188265-51188284 | MS.gene043895:intron | 35.0% | |
AGTAATAAGACCATGTCCAA+TGG | - | chr5.3:51188981-51189000 | MS.gene043895:intron | 35.0% | |
ATTTGACGTTTGCATCATGA+CGG | - | chr5.3:51188926-51188945 | MS.gene043895:intron | 35.0% | |
CAAGTGTATAGTGATATACC+AGG | + | chr5.3:51190142-51190161 | None:intergenic | 35.0% | |
CATCGACACTTGAAACATTA+AGG | + | chr5.3:51188320-51188339 | None:intergenic | 35.0% | |
CATGTTTCCTCAATACTCTA+TGG | - | chr5.3:51188116-51188135 | MS.gene043895:intron | 35.0% | |
CTACATGTGGTTCAAAAACA+GGG | - | chr5.3:51187937-51187956 | MS.gene043895:intron | 35.0% | |
CTGGTATATCACTATACACT+TGG | - | chr5.3:51190140-51190159 | MS.gene043895:CDS | 35.0% | |
CTGTAAATCAATGGATCTTG+TGG | + | chr5.3:51187210-51187229 | None:intergenic | 35.0% | |
GAGAAATATTCGATTGAGAG+GGG | - | chr5.3:51188520-51188539 | MS.gene043895:intron | 35.0% | |
GAGACTTGGATCATTTGATT+TGG | + | chr5.3:51189680-51189699 | None:intergenic | 35.0% | |
GAGGAAACTTTGATGTCTTA+TGG | - | chr5.3:51187767-51187786 | MS.gene043895:intron | 35.0% | |
GTAGGCTTCAACTTATTGAA+TGG | - | chr5.3:51189956-51189975 | MS.gene043895:intron | 35.0% | |
GTGACTGATTATTGTTGGTA+GGG | + | chr5.3:51188167-51188186 | None:intergenic | 35.0% | |
GTTGTTGCATAACAGAAATC+TGG | - | chr5.3:51190099-51190118 | MS.gene043895:CDS | 35.0% | |
GTTGTTGGGATTCAAAATCT+TGG | - | chr5.3:51188279-51188298 | MS.gene043895:intron | 35.0% | |
TCAACCCTAAATTCTACATG+TGG | - | chr5.3:51187924-51187943 | MS.gene043895:intron | 35.0% | |
TCTACATGTGGTTCAAAAAC+AGG | - | chr5.3:51187936-51187955 | MS.gene043895:intron | 35.0% | |
TGAGAAAATTGTTGGAGACA+TGG | + | chr5.3:51188553-51188572 | None:intergenic | 35.0% | |
TGAGATATCACGTAGAATTC+AGG | - | chr5.3:51190515-51190534 | MS.gene043895:CDS | 35.0% | |
TGGAAAAACTATAGCCTCTA+AGG | + | chr5.3:51187190-51187209 | None:intergenic | 35.0% | |
TGGTTTAAAAATTGACGTGG+AGG | + | chr5.3:51190325-51190344 | None:intergenic | 35.0% | |
TGTTGAATGATTGGAGAAGA+GGG | + | chr5.3:51190017-51190036 | None:intergenic | 35.0% | |
TTGCATAACAGAAATCTGGA+GGG | - | chr5.3:51190103-51190122 | MS.gene043895:CDS | 35.0% | |
TTGTTGAATGATTGGAGAAG+AGG | + | chr5.3:51190018-51190037 | None:intergenic | 35.0% | |
! | AAAAATTGACGTGGAGGTTT+TGG | + | chr5.3:51190319-51190338 | None:intergenic | 35.0% |
! | AAATAAAAAGTGGTGGGGTA+GGG | + | chr5.3:51189127-51189146 | None:intergenic | 35.0% |
! | AGAAAATGATGTGGAGTGTT+GGG | + | chr5.3:51189048-51189067 | None:intergenic | 35.0% |
! | AGTGTTGGGAATTGAAAAAG+TGG | + | chr5.3:51189034-51189053 | None:intergenic | 35.0% |
! | ATGAAAGTTGTTTGGAACAG+AGG | - | chr5.3:51189383-51189402 | MS.gene043895:CDS | 35.0% |
! | CCAAAATTAGGCATGTTTTG+AGG | - | chr5.3:51189432-51189451 | MS.gene043895:CDS | 35.0% |
! | CCTCAAAACATGCCTAATTT+TGG | + | chr5.3:51189435-51189454 | None:intergenic | 35.0% |
! | GATCTTCTTCGTCTTTTGTT+TGG | + | chr5.3:51187305-51187324 | None:intergenic | 35.0% |
! | GTTGGTTGGGAAATTGATTT+GGG | - | chr5.3:51189490-51189509 | MS.gene043895:CDS | 35.0% |
! | TGTTGGTTGGGAAATTGATT+TGG | - | chr5.3:51189489-51189508 | MS.gene043895:CDS | 35.0% |
!! | GGGTGTTGAATGAAAACTAT+TGG | + | chr5.3:51189107-51189126 | None:intergenic | 35.0% |
!!! | CATGTTTTGAGGATTTTGGT+TGG | - | chr5.3:51189443-51189462 | MS.gene043895:CDS | 35.0% |
!!! | CCTCAATTTTTAGTCGATCT+GGG | + | chr5.3:51187751-51187770 | None:intergenic | 35.0% |
!!! | GGAAATTGATTTGGGTTTTG+AGG | - | chr5.3:51189465-51189484 | MS.gene043895:CDS | 35.0% |
!!! | TAGGCATGTTTTGAGGATTT+TGG | - | chr5.3:51189439-51189458 | MS.gene043895:CDS | 35.0% |
!!! | TCCTCAATTTTTAGTCGATC+TGG | + | chr5.3:51187752-51187771 | None:intergenic | 35.0% |
ACAAGGACAGGTTATGAAGA+TGG | - | chr5.3:51188257-51188276 | MS.gene043895:intron | 40.0% | |
ACCAACAATAATCAGTCACG+TGG | - | chr5.3:51188168-51188187 | MS.gene043895:intron | 40.0% | |
ACCTTATTCTCTGTTCGAAC+CGG | + | chr5.3:51190273-51190292 | None:intergenic | 40.0% | |
ACTTGGAGTGGTTTCAACTA+AGG | + | chr5.3:51187253-51187272 | None:intergenic | 40.0% | |
ATAACAGAAATCTGGAGGGA+AGG | - | chr5.3:51190107-51190126 | MS.gene043895:CDS | 40.0% | |
ATTGAAGATGAGATGGAGGA+GGG | + | chr5.3:51189993-51190012 | None:intergenic | 40.0% | |
CAGGTTATGAAGATGGTTGT+TGG | - | chr5.3:51188264-51188283 | MS.gene043895:intron | 40.0% | |
CCCAGATCGACTAAAAATTG+AGG | - | chr5.3:51187748-51187767 | MS.gene043895:intron | 40.0% | |
CGGTGCAATTAACTTCTTGA+AGG | - | chr5.3:51187981-51188000 | MS.gene043895:intron | 40.0% | |
CGGTTAGTGCTAAGGTAAAT+TGG | - | chr5.3:51188355-51188374 | MS.gene043895:intron | 40.0% | |
CGTGACTGATTATTGTTGGT+AGG | + | chr5.3:51188168-51188187 | None:intergenic | 40.0% | |
GAGAAAATGATGTGGAGTGT+TGG | + | chr5.3:51189049-51189068 | None:intergenic | 40.0% | |
GATATCACGTAGAATTCAGG+TGG | - | chr5.3:51190518-51190537 | MS.gene043895:CDS | 40.0% | |
GCCTCCTTCTTATGCAAAAA+GGG | - | chr5.3:51187623-51187642 | MS.gene043895:intron | 40.0% | |
GGATGGGTGATTGAAATTTG+AGG | - | chr5.3:51189404-51189423 | MS.gene043895:CDS | 40.0% | |
GGCAGATATAGAAGTGACTT+TGG | - | chr5.3:51188194-51188213 | MS.gene043895:intron | 40.0% | |
GTTGAAAAAACGACAAGGAC+AGG | - | chr5.3:51188245-51188264 | MS.gene043895:intron | 40.0% | |
GTTGCATAACAGAAATCTGG+AGG | - | chr5.3:51190102-51190121 | MS.gene043895:CDS | 40.0% | |
TATTGAAGATGAGATGGAGG+AGG | + | chr5.3:51189994-51190013 | None:intergenic | 40.0% | |
TGCCTCCTTCTTATGCAAAA+AGG | - | chr5.3:51187622-51187641 | MS.gene043895:intron | 40.0% | |
TGTGAATGCAAAAAACGAGG+AGG | - | chr5.3:51187509-51187528 | MS.gene043895:intron | 40.0% | |
TTGAATAAAGCTGTGACACG+TGG | + | chr5.3:51189831-51189850 | None:intergenic | 40.0% | |
! | AAGTTGTTTGGAACAGAGGA+TGG | - | chr5.3:51189387-51189406 | MS.gene043895:CDS | 40.0% |
! | ACCCTTTTTGCATAAGAAGG+AGG | + | chr5.3:51187627-51187646 | None:intergenic | 40.0% |
! | AGTTGTTTGGAACAGAGGAT+GGG | - | chr5.3:51189388-51189407 | MS.gene043895:CDS | 40.0% |
! | CAATAAGTTGAAGCCTACAC+CGG | + | chr5.3:51189954-51189973 | None:intergenic | 40.0% |
! | CGATGATAATGTCCTTGTCT+CGG | - | chr5.3:51188335-51188354 | MS.gene043895:intron | 40.0% |
! | GAAATAAAAAGTGGTGGGGT+AGG | + | chr5.3:51189128-51189147 | None:intergenic | 40.0% |
! | GTGAAGAGTGTGAATTCCAT+TGG | + | chr5.3:51187407-51187426 | None:intergenic | 40.0% |
!! | AGAGGGTATTGAAGATGAGA+TGG | + | chr5.3:51190000-51190019 | None:intergenic | 40.0% |
!!! | GATTTGGGTTTTGAGGATGT+TGG | - | chr5.3:51189472-51189491 | MS.gene043895:CDS | 40.0% |
AAAAGTGGAAGGAGGAAGAG+TGG | + | chr5.3:51187439-51187458 | None:intergenic | 45.0% | |
ACACCTTAGACCAAGTCCAA+TGG | + | chr5.3:51190064-51190083 | None:intergenic | 45.0% | |
ACCTTAGACCAAGTCCAATG+GGG | + | chr5.3:51190062-51190081 | None:intergenic | 45.0% | |
CAACTACTGAACACAGTGGA+TGG | - | chr5.3:51190474-51190493 | MS.gene043895:CDS | 45.0% | |
CAATAATCAGTCACGTGGCA+TGG | - | chr5.3:51188173-51188192 | MS.gene043895:intron | 45.0% | |
CACCTACTCAGAAAACCTAC+CGG | - | chr5.3:51190251-51190270 | MS.gene043895:CDS | 45.0% | |
CACCTTAGACCAAGTCCAAT+GGG | + | chr5.3:51190063-51190082 | None:intergenic | 45.0% | |
CGCTGTGAATGCAAAAAACG+AGG | - | chr5.3:51187506-51187525 | MS.gene043895:intron | 45.0% | |
GATCAAGCGTCAATAGTTGG+CGG | - | chr5.3:51187961-51187980 | MS.gene043895:intron | 45.0% | |
GCCACGTGACTGATTATTGT+TGG | + | chr5.3:51188172-51188191 | None:intergenic | 45.0% | |
GGTGATCAAGCGTCAATAGT+TGG | - | chr5.3:51187958-51187977 | MS.gene043895:intron | 45.0% | |
GTGTCAACTACTGAACACAG+TGG | - | chr5.3:51190470-51190489 | MS.gene043895:CDS | 45.0% | |
GTTGAAACCACTCCAAGTGA+AGG | - | chr5.3:51187255-51187274 | MS.gene043895:CDS | 45.0% | |
TACCCTTTCAATACCCCCAT+TGG | - | chr5.3:51190045-51190064 | MS.gene043895:intron | 45.0% | |
TATTCTCTGTTCGAACCGGT+AGG | + | chr5.3:51190269-51190288 | None:intergenic | 45.0% | |
TCAAGGATTTGAGGACATCG+AGG | + | chr5.3:51187602-51187621 | None:intergenic | 45.0% | |
TCCTAGACGTTTAACGCATC+CGG | - | chr5.3:51187812-51187831 | MS.gene043895:intron | 45.0% | |
TTCAATACCCCCATTGGACT+TGG | - | chr5.3:51190051-51190070 | MS.gene043895:intron | 45.0% | |
TTGTTTGGCAACCGTAGTTG+TGG | + | chr5.3:51187290-51187309 | None:intergenic | 45.0% | |
! | AACCGGTAGGTTTTCTGAGT+AGG | + | chr5.3:51190256-51190275 | None:intergenic | 45.0% |
! | AATTGTTGTTGGGGAGTCTG+AGG | + | chr5.3:51187841-51187860 | None:intergenic | 45.0% |
!! | AAGGAGGCATCAAGGATTTG+AGG | + | chr5.3:51187611-51187630 | None:intergenic | 45.0% |
!! | ACCGGTTCGAACAGAGAATA+AGG | - | chr5.3:51190269-51190288 | MS.gene043895:CDS | 45.0% |
!! | AGTCCAATGGGGGTATTGAA+AGG | + | chr5.3:51190051-51190070 | None:intergenic | 45.0% |
!! | GGGTATTGAAGATGAGATGG+AGG | + | chr5.3:51189997-51190016 | None:intergenic | 45.0% |
!! | GTCCAATGGGGGTATTGAAA+GGG | + | chr5.3:51190050-51190069 | None:intergenic | 45.0% |
!! | TGCATAAGAAGGAGGCATCA+AGG | + | chr5.3:51187619-51187638 | None:intergenic | 45.0% |
!! | TGTTGTGGTGGATGCAAAAG+TGG | + | chr5.3:51187454-51187473 | None:intergenic | 45.0% |
!!! | GGGTTTTGAGGATGTTGGTT+GGG | - | chr5.3:51189477-51189496 | MS.gene043895:CDS | 45.0% |
!!! | TATGGTTTTGGGTACGAGTG+TGG | - | chr5.3:51187785-51187804 | MS.gene043895:intron | 45.0% |
!!! | TGGGTTTTGAGGATGTTGGT+TGG | - | chr5.3:51189476-51189495 | MS.gene043895:CDS | 45.0% |
CCAAGATCCTTCACTTGGAG+TGG | + | chr5.3:51187265-51187284 | None:intergenic | 50.0% | |
CCACTCCAAGTGAAGGATCT+TGG | - | chr5.3:51187262-51187281 | MS.gene043895:CDS | 50.0% | |
CCTAGACGTTTAACGCATCC+GGG | - | chr5.3:51187813-51187832 | MS.gene043895:intron | 50.0% | |
CCTTAGACCAAGTCCAATGG+GGG | + | chr5.3:51190061-51190080 | None:intergenic | 50.0% | |
CCTTAGCACTAACCGAGACA+AGG | + | chr5.3:51188350-51188369 | None:intergenic | 50.0% | |
CCTTGTCTCGGTTAGTGCTA+AGG | - | chr5.3:51188347-51188366 | MS.gene043895:intron | 50.0% | |
CTGCAATGTGAGTCATCCTC+TGG | + | chr5.3:51187545-51187564 | None:intergenic | 50.0% | |
GGAGGAAGAGTGGAAGTTTC+AGG | + | chr5.3:51187429-51187448 | None:intergenic | 50.0% | |
GGATCTTGGAGCCACAACTA+CGG | - | chr5.3:51187276-51187295 | MS.gene043895:intron | 50.0% | |
GTGGATGCAAAAGTGGAAGG+AGG | + | chr5.3:51187447-51187466 | None:intergenic | 50.0% | |
TGGCTCCAAGATCCTTCACT+TGG | + | chr5.3:51187270-51187289 | None:intergenic | 50.0% | |
TTTCTGAGTAGGTGCCTTGC+AGG | + | chr5.3:51190245-51190264 | None:intergenic | 50.0% | |
! | GAGGGAAGGTGTATATCACC+TGG | - | chr5.3:51190121-51190140 | MS.gene043895:CDS | 50.0% |
!! | CTGTGACACGTGGTGTTATC+TGG | + | chr5.3:51189821-51189840 | None:intergenic | 50.0% |
!! | GACACGTGGTGTTATCTGGT+TGG | + | chr5.3:51189817-51189836 | None:intergenic | 50.0% |
!! | GGTGCACCCATAGAGTATTG+AGG | + | chr5.3:51188126-51188145 | None:intergenic | 50.0% |
!! | GTGGTGGATGCAAAAGTGGA+AGG | + | chr5.3:51187450-51187469 | None:intergenic | 50.0% |
AGGAGGAAATCGAGAGCCAG+AGG | - | chr5.3:51187526-51187545 | MS.gene043895:intron | 55.0% | |
AGGAGGGGCTATGGTTGTTG+TGG | + | chr5.3:51187469-51187488 | None:intergenic | 55.0% | |
AGGGGCTATGGTTGTTGTGG+TGG | + | chr5.3:51187466-51187485 | None:intergenic | 55.0% | |
CAACAACCATAGCCCCTCCT+CGG | - | chr5.3:51187469-51187488 | MS.gene043895:intron | 55.0% | |
CCCGGATGCGTTAAACGTCT+AGG | + | chr5.3:51187816-51187835 | None:intergenic | 55.0% | |
GGGTAGCACGTGATGTTCTG+AGG | + | chr5.3:51188147-51188166 | None:intergenic | 55.0% | |
! | CCCCCATTGGACTTGGTCTA+AGG | - | chr5.3:51190058-51190077 | MS.gene043895:intron | 55.0% |
GTCGTCGTTTGCTCCGAGGA+GGG | + | chr5.3:51187485-51187504 | None:intergenic | 60.0% | |
TCGTCGTTTGCTCCGAGGAG+GGG | + | chr5.3:51187484-51187503 | None:intergenic | 60.0% | |
TTTGCTCCGAGGAGGGGCTA+TGG | + | chr5.3:51187478-51187497 | None:intergenic | 60.0% | |
! | GTGTACCACACGCACCGACA+GGG | + | chr5.3:51189892-51189911 | None:intergenic | 60.0% |
AAACGCGCCGCGTGGCAATC+CGG | - | chr5.3:51189932-51189951 | MS.gene043895:intron | 65.0% | |
ACGAACAGAAACGCGCCGCG+TGG | - | chr5.3:51189924-51189943 | MS.gene043895:intron | 65.0% | |
CGCGTGGGACTCTGCAAACG+CGG | + | chr5.3:51189869-51189888 | None:intergenic | 65.0% | |
CGGCGCGTTTCTGTTCGTCC+AGG | + | chr5.3:51189922-51189941 | None:intergenic | 65.0% | |
CGTCGTCGTTTGCTCCGAGG+AGG | + | chr5.3:51187486-51187505 | None:intergenic | 65.0% | |
GCCTACACCGGATTGCCACG+CGG | + | chr5.3:51189942-51189961 | None:intergenic | 65.0% | |
GTGTGGTACACGCGCTTGCC+TGG | - | chr5.3:51189901-51189920 | MS.gene043895:intron | 65.0% | |
GTTGGGGAGTCTGAGGAGCC+CGG | + | chr5.3:51187834-51187853 | None:intergenic | 65.0% | |
! | CGTGTACCACACGCACCGAC+AGG | + | chr5.3:51189893-51189912 | None:intergenic | 65.0% |
CAGAGTCCCACGCGCCCTGT+CGG | - | chr5.3:51189875-51189894 | MS.gene043895:intron | 70.0% | |
GCCGCGTGGCAATCCGGTGT+AGG | - | chr5.3:51189938-51189957 | MS.gene043895:intron | 70.0% | |
GCGCGTCGTCGTTTGCTCCG+AGG | + | chr5.3:51187489-51187508 | None:intergenic | 70.0% | |
ACGCGCCCTGTCGGTGCGTG+TGG | - | chr5.3:51189884-51189903 | MS.gene043895:intron | 75.0% | |
! | ACACGCACCGACAGGGCGCG+TGG | + | chr5.3:51189885-51189904 | None:intergenic | 75.0% |
! | CACGCACCGACAGGGCGCGT+GGG | + | chr5.3:51189884-51189903 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 51187183 | 51190560 | 51187183 | ID=MS.gene043895 |
chr5.3 | mRNA | 51187183 | 51190560 | 51187183 | ID=MS.gene043895.t1;Parent=MS.gene043895 |
chr5.3 | exon | 51190099 | 51190560 | 51190099 | ID=MS.gene043895.t1.exon1;Parent=MS.gene043895.t1 |
chr5.3 | CDS | 51190099 | 51190560 | 51190099 | ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1 |
chr5.3 | exon | 51189375 | 51189785 | 51189375 | ID=MS.gene043895.t1.exon2;Parent=MS.gene043895.t1 |
chr5.3 | CDS | 51189375 | 51189785 | 51189375 | ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1 |
chr5.3 | exon | 51187183 | 51187284 | 51187183 | ID=MS.gene043895.t1.exon3;Parent=MS.gene043895.t1 |
chr5.3 | CDS | 51187183 | 51187284 | 51187183 | ID=cds.MS.gene043895.t1;Parent=MS.gene043895.t1 |
Gene Sequence |
Protein sequence |