AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04396


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04396.t1 MTR_3g061510 98.480 329 5 0 1 329 1 329 0.0 664
MS.gene04396.t1 MTR_3g061510 98.480 329 5 0 1 329 21 349 0.0 663
MS.gene04396.t1 MTR_8g037270 46.445 211 87 7 20 226 21 209 1.82e-46 159
MS.gene04396.t1 MTR_2g041090 60.577 104 36 3 128 226 30 133 1.54e-35 129
MS.gene04396.t1 MTR_2g030170 56.731 104 40 1 144 242 81 184 2.08e-32 120
MS.gene04396.t1 MTR_8g019540 54.717 106 44 2 124 226 116 220 4.01e-32 122
MS.gene04396.t1 MTR_2g099490 54.545 121 50 3 112 229 114 232 1.99e-31 120
MS.gene04396.t1 MTR_7g106450 42.105 190 87 8 104 285 106 280 9.11e-31 119
MS.gene04396.t1 MTR_2g030170 59.551 89 36 0 154 242 129 217 1.04e-30 116
MS.gene04396.t1 MTR_2g099490 48.889 135 52 3 112 229 114 248 3.06e-29 115
MS.gene04396.t1 MTR_1g056530 50.427 117 44 4 124 237 126 231 1.41e-27 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04396.t1 AT5G12840 55.469 256 106 6 16 268 17 267 3.63e-85 258
MS.gene04396.t1 AT5G12840 55.469 256 106 6 16 268 17 267 3.63e-85 258
MS.gene04396.t1 AT5G12840 55.253 257 106 7 16 268 17 268 2.44e-83 253
MS.gene04396.t1 AT5G12840 55.253 257 106 7 16 268 17 268 2.44e-83 253
MS.gene04396.t1 AT5G12840 55.253 257 106 7 16 268 17 268 2.44e-83 253
MS.gene04396.t1 AT3G20910 58.904 219 60 7 116 329 110 303 1.95e-73 229
MS.gene04396.t1 AT1G30500 59.091 110 40 3 124 231 52 158 4.01e-33 121
MS.gene04396.t1 AT1G30500 56.757 111 45 2 124 231 52 162 4.27e-32 119
MS.gene04396.t1 AT1G72830 57.143 98 39 2 132 226 137 234 4.21e-31 120
MS.gene04396.t1 AT2G34720 45.714 140 70 2 125 258 48 187 5.23e-31 116
MS.gene04396.t1 AT2G34720 47.015 134 65 2 131 258 19 152 4.56e-30 112
MS.gene04396.t1 AT2G34720 47.015 134 65 2 131 258 19 152 4.56e-30 112
MS.gene04396.t1 AT1G72830 56.566 99 39 3 132 226 137 235 2.06e-29 115
MS.gene04396.t1 AT1G17590 56.701 97 36 3 132 226 135 227 3.65e-29 114
MS.gene04396.t1 AT1G17590 56.701 97 36 3 132 226 135 227 3.65e-29 114
MS.gene04396.t1 AT1G17590 56.701 97 36 3 132 226 135 227 3.65e-29 114
MS.gene04396.t1 AT1G17590 56.701 97 36 3 132 226 135 227 3.65e-29 114
MS.gene04396.t1 AT1G54160 43.066 137 68 3 95 226 102 233 8.14e-29 113
MS.gene04396.t1 AT3G14020 54.167 96 39 3 135 226 132 226 7.43e-27 108
MS.gene04396.t1 AT3G14020 54.167 96 39 3 135 226 132 226 7.43e-27 108
MS.gene04396.t1 AT5G06510 31.776 214 110 8 27 235 13 195 3.96e-22 94.4
MS.gene04396.t1 AT5G06510 31.776 214 110 8 27 235 13 195 3.96e-22 94.4
MS.gene04396.t1 AT5G06510 31.776 214 110 8 27 235 13 195 3.96e-22 94.4
MS.gene04396.t1 AT5G06510 31.776 214 110 8 27 235 13 195 3.96e-22 94.4
MS.gene04396.t1 AT5G06510 45.872 109 43 4 130 235 5 100 5.54e-22 91.7
MS.gene04396.t1 AT5G06510 45.872 109 43 4 130 235 5 100 5.54e-22 91.7
MS.gene04396.t1 AT5G06510 45.872 109 43 4 130 235 51 146 2.35e-21 90.9
MS.gene04396.t1 AT3G05690 44.928 138 55 6 114 242 88 213 3.60e-21 92.0
MS.gene04396.t1 AT3G05690 34.468 235 110 11 22 242 46 250 6.56e-21 92.0
MS.gene04396.t1 AT1G72830 48.421 95 27 2 132 226 137 209 6.65e-19 86.3

Find 107 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATCAGGATCCATATTA+TGG 0.185298 3.4:-57340260 MS.gene04396:CDS
TTCCTCATTCATCTCGCTAT+TGG 0.264449 3.4:+57340837 None:intergenic
CCTCGGTTGATTTGCAGTTT+CGG 0.272870 3.4:+57341020 None:intergenic
TTGATTTGCAGTTTCGGACT+TGG 0.313960 3.4:+57341026 None:intergenic
CTCAAGGGGCAAAGGCATTC+TGG 0.314340 3.4:+57340047 None:intergenic
GTGGAAGAAGGGGACTGTTC+AGG 0.315135 3.4:-57338831 MS.gene04396:CDS
GCATGAGGCACTCCTATAAA+AGG 0.333358 3.4:+57340069 None:intergenic
TATGCAATCTTCAAGGTATC+AGG 0.338770 3.4:-57338862 MS.gene04396:CDS
TTCTAAAGCACCTGATTGAT+TGG 0.345684 3.4:+57340777 None:intergenic
CCAGACATTGTTTGCGCTAC+AGG 0.346287 3.4:+57340928 None:intergenic
TGTTTAGCGTTCACATAAAC+AGG 0.347626 3.4:+57340012 None:intergenic
TTCTTCTTGATAGGAAATTA+CGG 0.354225 3.4:-57340619 MS.gene04396:intron
CAAAGACTGGCCTTCCTCAT+TGG 0.355087 3.4:+57340861 None:intergenic
TCGCATGTTGGGAGAATTCC+AGG 0.360834 3.4:+57338944 None:intergenic
GCAAGAGGATCAAACGAAAA+TGG 0.361215 3.4:-57338915 MS.gene04396:CDS
GCATACCATTGTTGTTGTTA+TGG 0.371144 3.4:+57338880 None:intergenic
ATGTGCTACAAATCCTTATC+AGG 0.378434 3.4:-57340273 MS.gene04396:CDS
GAAAACTGATGGCGAGGCCT+CGG 0.385763 3.4:-57339054 MS.gene04396:CDS
CTTGCATCTTGTCGCATGTT+GGG 0.394811 3.4:+57338933 None:intergenic
CTTATCAGGATCCATATTAT+GGG 0.407754 3.4:-57340259 MS.gene04396:CDS
TCGCAATCAATTAGTTCATC+TGG 0.408092 3.4:-57338999 MS.gene04396:CDS
GAGGCCTCGGGAAAGGATAA+TGG 0.413220 3.4:-57339041 MS.gene04396:CDS
CCTGTAGCGCAAACAATGTC+TGG 0.435636 3.4:-57340928 MS.gene04396:CDS
ACAATCAAGAGAGGATGAAT+TGG 0.445592 3.4:+57340903 None:intergenic
TCCTCTCTTGATTGTCCCAA+TGG 0.445841 3.4:-57340895 MS.gene04396:CDS
TGTCTAGATTCATGAAGATA+TGG 0.448950 3.4:+57339125 None:intergenic
CCATAATATGGATCCTGATA+AGG 0.451848 3.4:+57340260 None:intergenic
CTTCAGACTCTGCGGAAACC+TGG 0.454407 3.4:-57338962 MS.gene04396:CDS
TCTAAAGCACCTGATTGATT+GGG 0.457401 3.4:+57340778 None:intergenic
CCTCTGCGATGCCTCGTTCG+AGG 0.460703 3.4:+57338788 None:intergenic
TCTTGCATCTTGTCGCATGT+TGG 0.462937 3.4:+57338932 None:intergenic
TGATTTGCAGTTTCGGACTT+GGG 0.466356 3.4:+57341027 None:intergenic
TGGAAGAAGGGGACTGTTCA+GGG 0.467131 3.4:-57338830 MS.gene04396:CDS
TTGAGAAGGGCAAGAGGCAC+CGG 0.467176 3.4:-57339092 MS.gene04396:CDS
CCTGCTGCTCCCAATCAATC+AGG 0.469165 3.4:-57340787 MS.gene04396:intron
CCTGATTGATTGGGAGCAGC+AGG 0.471231 3.4:+57340787 None:intergenic
AATGCCTTTGCCCCTTGAGA+TGG 0.476507 3.4:-57340043 MS.gene04396:CDS
GTCTTCGCCTCAGAATTCCT+TGG 0.480874 3.4:+57339986 None:intergenic
ATTGATTGCGACGACAAGAC+TGG 0.480972 3.4:+57339011 None:intergenic
AAAACTGATGGCGAGGCCTC+GGG 0.486871 3.4:-57339053 MS.gene04396:CDS
ACTCCTCAGCTGGAACTTGT+TGG 0.498120 3.4:-57340532 MS.gene04396:CDS
TCGGGAAAGGATAATGGCTC+TGG 0.498937 3.4:-57339035 MS.gene04396:CDS
ATTGGATTCTGAATCACCAT+TGG 0.502864 3.4:+57340879 None:intergenic
CAGGGTGAAAGAGTGGAAGA+AGG 0.503255 3.4:-57338843 MS.gene04396:CDS
TTGGATTCTGAATCACCATT+GGG 0.505994 3.4:+57340880 None:intergenic
TTTCTTTGCAAATCGTCCTC+CGG 0.509061 3.4:+57339073 None:intergenic
GAACCTTGGTGGCGTGGTGT+TGG 0.516801 3.4:-57340958 MS.gene04396:CDS
CCTCACACAGACTCCTCAGC+TGG 0.517659 3.4:-57340542 MS.gene04396:CDS
GAAGCTCATAAAATCTAGAA+AGG 0.519482 3.4:-57339935 MS.gene04396:intron
GTGCTAAAGCAGAGCTTGAA+AGG 0.520912 3.4:-57339957 MS.gene04396:CDS
ACCATTGTTGTTGTTATGGT+AGG 0.521132 3.4:+57338884 None:intergenic
AGGGTGAAAGAGTGGAAGAA+GGG 0.525419 3.4:-57338842 MS.gene04396:CDS
ACAATGGTATGCAATCTTCA+AGG 0.528717 3.4:-57338869 MS.gene04396:CDS
AGCTTATCCTCACCAGCCGT+TGG 0.530288 3.4:-57340225 MS.gene04396:intron
TGATGGCGAGGCCTCGGGAA+AGG 0.533639 3.4:-57339048 MS.gene04396:CDS
GTGGTGTTTATTCTGAACCT+TGG 0.535143 3.4:-57340972 MS.gene04396:CDS
TCTCGCTATTGGACAAAGAC+TGG 0.535979 3.4:+57340848 None:intergenic
CAGGTTCTTGAGCCATCTCA+AGG 0.541180 3.4:+57340031 None:intergenic
GACATCAGCATGCTTTGAGA+AGG 0.559068 3.4:-57339106 MS.gene04396:CDS
TGAGCCATCTCAAGGGGCAA+AGG 0.560137 3.4:+57340039 None:intergenic
CAGGTTTCCGCAGAGTCTGA+AGG 0.567519 3.4:+57338963 None:intergenic
GATCCTCATTCCTTTCAGCC+CGG 0.568473 3.4:-57340994 MS.gene04396:CDS
ATAAACACCACCGGGCTGAA+AGG 0.570819 3.4:+57340984 None:intergenic
TCTGTGTGAGGCATTCTTCG+CGG 0.575950 3.4:+57340554 None:intergenic
TCACATACCAACGGCTGGTG+AGG 0.579630 3.4:+57340218 None:intergenic
AAGGTATCAGGGTGAAAGAG+TGG 0.579884 3.4:-57338850 MS.gene04396:CDS
GTGTTTATTCTGAACCTTGG+TGG 0.581264 3.4:-57340969 MS.gene04396:CDS
AGGTTCAGAATAAACACCAC+CGG 0.582494 3.4:+57340975 None:intergenic
GGAAGATGATGATGCTGCTA+AGG 0.583652 3.4:-57340818 MS.gene04396:CDS
TAATGTCACATACCAACGGC+TGG 0.588332 3.4:+57340213 None:intergenic
TATTCTGAACCTTGGTGGCG+TGG 0.589853 3.4:-57340964 MS.gene04396:CDS
GGATCAAACGAAAATGGTGG+TGG 0.592838 3.4:-57338909 MS.gene04396:CDS
ATGCAATCTTCAAGGTATCA+GGG 0.599536 3.4:-57338861 MS.gene04396:CDS
GGAAATTACGGACAAGAACA+AGG 0.600249 3.4:-57340607 MS.gene04396:CDS
TTATCAGGATCCATATTATG+GGG 0.600718 3.4:-57340258 MS.gene04396:CDS
GTCCAATAGCGAGATGAATG+AGG 0.601303 3.4:-57340839 MS.gene04396:CDS
TGCAAAGAAAACTGATGGCG+AGG 0.605058 3.4:-57339060 MS.gene04396:CDS
AGGTTCTTGAGCCATCTCAA+GGG 0.605218 3.4:+57340032 None:intergenic
CCTCATTCCTTTCAGCCCGG+TGG 0.605967 3.4:-57340991 MS.gene04396:CDS
CATGCTTTGAGAAGGGCAAG+AGG 0.607747 3.4:-57339098 MS.gene04396:CDS
GGTTCTTGAGCCATCTCAAG+GGG 0.609159 3.4:+57340033 None:intergenic
CGATTTGCAAAGAAAACTGA+TGG 0.615729 3.4:-57339065 MS.gene04396:CDS
GATTCAGAATCCAATGAGGA+AGG 0.616324 3.4:-57340871 MS.gene04396:CDS
ACATCAGCATGCTTTGAGAA+GGG 0.618856 3.4:-57339105 MS.gene04396:CDS
GACTGTTCAGGGCAGCTACG+TGG 0.623934 3.4:-57338819 MS.gene04396:CDS
TCCTACCATAACAACAACAA+TGG 0.624469 3.4:-57338885 MS.gene04396:CDS
CCACCGGGCTGAAAGGAATG+AGG 0.626610 3.4:+57340991 None:intergenic
GGCAAAGGCATTCTGGCATG+AGG 0.634023 3.4:+57340054 None:intergenic
AGAAGGGCAAGAGGCACCGG+AGG 0.637214 3.4:-57339089 MS.gene04396:CDS
GGGTGAAAGAGTGGAAGAAG+GGG 0.642943 3.4:-57338841 MS.gene04396:CDS
CCAGCTGAGGAGTCTGTGTG+AGG 0.649225 3.4:+57340542 None:intergenic
GGTTCAGAATAAACACCACC+GGG 0.650774 3.4:+57340976 None:intergenic
AACAATACCAAGGAATTCTG+AGG 0.651910 3.4:-57339993 MS.gene04396:CDS
AGAGCCATTATCCTTTCCCG+AGG 0.653284 3.4:+57339037 None:intergenic
ACCATTGGGACAATCAAGAG+AGG 0.663692 3.4:+57340894 None:intergenic
TGAGGCACTCCTATAAAAGG+AGG 0.667807 3.4:+57340072 None:intergenic
TGGAAGCATCTCCTCGAACG+AGG 0.669556 3.4:-57338799 MS.gene04396:CDS
AAGGAATGAGGATCTGACCT+CGG 0.671701 3.4:+57341003 None:intergenic
TGACCAACAAGTTCCAGCTG+AGG 0.675734 3.4:+57340529 None:intergenic
TATCAGGATCCATATTATGG+GGG 0.690554 3.4:-57340257 MS.gene04396:CDS
AGAGGATCAAACGAAAATGG+TGG 0.692972 3.4:-57338912 MS.gene04396:CDS
GTGAACGCTAAACAATACCA+AGG 0.697540 3.4:-57340003 MS.gene04396:CDS
AACATGCGACAAGATGCAAG+AGG 0.706089 3.4:-57338930 MS.gene04396:CDS
TATCCAACACCACGCCACCA+AGG 0.707510 3.4:+57340955 None:intergenic
TGGTGATTCAGAATCCAATG+AGG 0.715370 3.4:-57340875 MS.gene04396:CDS
CCTCGAACGAGGCATCGCAG+AGG 0.718093 3.4:-57338788 MS.gene04396:CDS
CCGAAACTGCAAATCAACCG+AGG 0.722272 3.4:-57341020 MS.gene04396:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTACTAACAATTAAATA+GGG - chr3.4:57339060-57339079 MS.gene04396:CDS 10.0%
!! TTATTTACTAACAATTAAAT+AGG - chr3.4:57339059-57339078 MS.gene04396:CDS 10.0%
!!! TATAAATGTTTCTAATATAT+AGG - chr3.4:57340106-57340125 MS.gene04396:intron 10.0%
!!! TTACATTTTTTTTTTTTTGA+AGG + chr3.4:57340255-57340274 None:intergenic 10.0%
!! ATTTACTAACAATTAAATAG+GGG - chr3.4:57339061-57339080 MS.gene04396:CDS 15.0%
!! ACTGCTTAAAAAAAAATCAA+AGG + chr3.4:57340146-57340165 None:intergenic 20.0%
!! ATCAAGAAAATAGAACAAAA+TGG + chr3.4:57339642-57339661 None:intergenic 20.0%
!! CATCTAATTTAATGTTTAGA+TGG - chr3.4:57340320-57340339 MS.gene04396:intron 20.0%
!! GAAAAAAAACAATAAAGCTT+AGG + chr3.4:57339318-57339337 None:intergenic 20.0%
!! TCTTGATTAATGGTAATATT+TGG - chr3.4:57339655-57339674 MS.gene04396:intron 20.0%
!! TTTACTAACAATTAAATAGG+GGG - chr3.4:57339062-57339081 MS.gene04396:CDS 20.0%
!!! GGATATTTGTCTTTTTTATA+TGG - chr3.4:57339941-57339960 MS.gene04396:CDS 20.0%
!!! TGTTCTATTTTCTTGATTAA+TGG - chr3.4:57339645-57339664 MS.gene04396:intron 20.0%
!!! TTACTACATAAACTTTTTGT+GGG - chr3.4:57340499-57340518 MS.gene04396:intron 20.0%
!!! TTTACTACATAAACTTTTTG+TGG - chr3.4:57340498-57340517 MS.gene04396:intron 20.0%
!!! TTTTTTTTCTTCTTCTTGAT+AGG - chr3.4:57339175-57339194 MS.gene04396:intron 20.0%
! AAAAAAAATCAAAGGCTCTA+TGG + chr3.4:57340138-57340157 None:intergenic 25.0%
! AAAAAAGACAAATATCCCAA+AGG + chr3.4:57339938-57339957 None:intergenic 25.0%
! AAAAGAATTGGAAGAATACT+AGG + chr3.4:57339501-57339520 None:intergenic 25.0%
! ATTCGTGCATATAATTTCAA+TGG - chr3.4:57339422-57339441 MS.gene04396:intron 25.0%
! TCAAATCAGTAACTTTATTC+TGG - chr3.4:57339382-57339401 MS.gene04396:intron 25.0%
! TCTAAATCAATAGTATTTGG+TGG + chr3.4:57339139-57339158 None:intergenic 25.0%
! TTAACAACTTGAAAGCAATT+GGG + chr3.4:57339341-57339360 None:intergenic 25.0%
! TTACTAACAATTAAATAGGG+GGG - chr3.4:57339063-57339082 MS.gene04396:CDS 25.0%
! TTCTTCTTGATAGGAAATTA+CGG - chr3.4:57339184-57339203 MS.gene04396:intron 25.0%
!! ATGATATTTTCCTTTCCTTT+GGG - chr3.4:57339920-57339939 MS.gene04396:intron 25.0%
!! TATGATATTTTCCTTTCCTT+TGG - chr3.4:57339919-57339938 MS.gene04396:intron 25.0%
!! TTTCTCATTTTACATGAATG+TGG + chr3.4:57340554-57340573 None:intergenic 25.0%
!!! ACCAAATACTATTGATTTAG+AGG - chr3.4:57339138-57339157 MS.gene04396:intron 25.0%
!!! TGTCTTTTTTATATGGAGAA+AGG - chr3.4:57339948-57339967 MS.gene04396:CDS 25.0%
AGATTAATGTCACATACCAA+CGG + chr3.4:57339597-57339616 None:intergenic 30.0%
CCATTAATATGCTGTATTGA+CGG - chr3.4:57340180-57340199 MS.gene04396:intron 30.0%
CTTAACAACTTGAAAGCAAT+TGG + chr3.4:57339342-57339361 None:intergenic 30.0%
CTTATCAGGATCCATATTAT+GGG - chr3.4:57339544-57339563 MS.gene04396:intron 30.0%
GAAGCTCATAAAATCTAGAA+AGG - chr3.4:57339868-57339887 MS.gene04396:intron 30.0%
GCCTCTAAATCAATAGTATT+TGG + chr3.4:57339142-57339161 None:intergenic 30.0%
GTCGTATGAAATTGTGAAAA+AGG + chr3.4:57339984-57340003 None:intergenic 30.0%
TAACAACTTGAAAGCAATTG+GGG + chr3.4:57339340-57339359 None:intergenic 30.0%
TCCATATAAAGACTAAGCAA+CGG + chr3.4:57340006-57340025 None:intergenic 30.0%
TGCACAAATGTCAAGAAAAA+TGG - chr3.4:57340448-57340467 MS.gene04396:intron 30.0%
TGTCTAGATTCATGAAGATA+TGG + chr3.4:57340681-57340700 None:intergenic 30.0%
TTATCAGGATCCATATTATG+GGG - chr3.4:57339545-57339564 MS.gene04396:intron 30.0%
! ATCAATAGTATTTGGTGGAA+TGG + chr3.4:57339134-57339153 None:intergenic 30.0%
! TTAATCTGTTACTTGCTTCA+AGG - chr3.4:57339610-57339629 MS.gene04396:intron 30.0%
! TTGTTGCTTGTTTCAAAAGT+GGG + chr3.4:57340300-57340319 None:intergenic 30.0%
AAAAATAAGCTCTCAGATGC+AGG - chr3.4:57340405-57340424 MS.gene04396:intron 35.0%
AACAATACCAAGGAATTCTG+AGG - chr3.4:57339810-57339829 MS.gene04396:intron 35.0%
ACAATCAAGAGAGGATGAAT+TGG + chr3.4:57338903-57338922 None:intergenic 35.0%
ACAATGGTATGCAATCTTCA+AGG - chr3.4:57340934-57340953 MS.gene04396:CDS 35.0%
AGACAAATATCCCAAAGGAA+AGG + chr3.4:57339933-57339952 None:intergenic 35.0%
ATGTGCTACAAATCCTTATC+AGG - chr3.4:57339530-57339549 MS.gene04396:intron 35.0%
ATTGGATTCTGAATCACCAT+TGG + chr3.4:57338927-57338946 None:intergenic 35.0%
CCATAATATGGATCCTGATA+AGG + chr3.4:57339546-57339565 None:intergenic 35.0%
CCGTCAATACAGCATATTAA+TGG + chr3.4:57340183-57340202 None:intergenic 35.0%
CCTTATCAGGATCCATATTA+TGG - chr3.4:57339543-57339562 MS.gene04396:intron 35.0%
CGATTTGCAAAGAAAACTGA+TGG - chr3.4:57340738-57340757 MS.gene04396:intron 35.0%
GGACTCATGCAAGTAAAAAA+TGG + chr3.4:57340606-57340625 None:intergenic 35.0%
GTCTCACTTGAAACATATTC+TGG + chr3.4:57340627-57340646 None:intergenic 35.0%
TATCAGGATCCATATTATGG+GGG - chr3.4:57339546-57339565 MS.gene04396:intron 35.0%
TATCCTTGTCTGCAAGAATT+AGG - chr3.4:57340377-57340396 MS.gene04396:intron 35.0%
TCCTACCATAACAACAACAA+TGG - chr3.4:57340918-57340937 MS.gene04396:CDS 35.0%
TCGCAATCAATTAGTTCATC+TGG - chr3.4:57340804-57340823 MS.gene04396:CDS 35.0%
TGTTTAGATGGATCTGCTAT+TGG - chr3.4:57340332-57340351 MS.gene04396:intron 35.0%
TGTTTAGCGTTCACATAAAC+AGG + chr3.4:57339794-57339813 None:intergenic 35.0%
TTGGATTCTGAATCACCATT+GGG + chr3.4:57338926-57338945 None:intergenic 35.0%
! ACCATTGTTGTTGTTATGGT+AGG + chr3.4:57340922-57340941 None:intergenic 35.0%
! ACCGTTGCTTAGTCTTTATA+TGG - chr3.4:57340002-57340021 MS.gene04396:CDS 35.0%
! ATGCAATCTTCAAGGTATCA+GGG - chr3.4:57340942-57340961 MS.gene04396:CDS 35.0%
! GCATACCATTGTTGTTGTTA+TGG + chr3.4:57340926-57340945 None:intergenic 35.0%
! GTTGTTGCTTGTTTCAAAAG+TGG + chr3.4:57340301-57340320 None:intergenic 35.0%
! TAGGGATATCCTCCTTTTAT+AGG - chr3.4:57339722-57339741 MS.gene04396:intron 35.0%
! TATGCAATCTTCAAGGTATC+AGG - chr3.4:57340941-57340960 MS.gene04396:CDS 35.0%
! TCTAAAGCACCTGATTGATT+GGG + chr3.4:57339028-57339047 None:intergenic 35.0%
! TCTTCCAATTCTTTTGATGC+AGG - chr3.4:57339506-57339525 MS.gene04396:intron 35.0%
!! TTCTAAAGCACCTGATTGAT+TGG + chr3.4:57339029-57339048 None:intergenic 35.0%
AGAGGATCAAACGAAAATGG+TGG - chr3.4:57340891-57340910 MS.gene04396:CDS 40.0%
AGCTTGTAGTTGCATGCATT+TGG - chr3.4:57339462-57339481 MS.gene04396:intron 40.0%
AGGTTCAGAATAAACACCAC+CGG + chr3.4:57338831-57338850 None:intergenic 40.0%
ATACACTGGCAAAATTGGAG+TGG + chr3.4:57340527-57340546 None:intergenic 40.0%
CATGCCTGCATCAAAAGAAT+TGG + chr3.4:57339513-57339532 None:intergenic 40.0%
GATTCAGAATCCAATGAGGA+AGG - chr3.4:57338932-57338951 MS.gene04396:CDS 40.0%
GCAAGAGGATCAAACGAAAA+TGG - chr3.4:57340888-57340907 MS.gene04396:CDS 40.0%
GGAAATTACGGACAAGAACA+AGG - chr3.4:57339196-57339215 MS.gene04396:intron 40.0%
GTGAACGCTAAACAATACCA+AGG - chr3.4:57339800-57339819 MS.gene04396:intron 40.0%
GTGGTGTTTATTCTGAACCT+TGG - chr3.4:57338831-57338850 MS.gene04396:CDS 40.0%
GTGTTTATTCTGAACCTTGG+TGG - chr3.4:57338834-57338853 MS.gene04396:CDS 40.0%
TATATGCGCTGTTGTCTGTA+AGG - chr3.4:57340077-57340096 MS.gene04396:CDS 40.0%
TGGTGATTCAGAATCCAATG+AGG - chr3.4:57338928-57338947 MS.gene04396:CDS 40.0%
TTAGATGGATCTGCTATTGG+AGG - chr3.4:57340335-57340354 MS.gene04396:intron 40.0%
TTCCTCATTCATCTCGCTAT+TGG + chr3.4:57338969-57338988 None:intergenic 40.0%
TTTCTTTGCAAATCGTCCTC+CGG + chr3.4:57340733-57340752 None:intergenic 40.0%
! TCCAATTTTGCCAGTGTATG+TGG - chr3.4:57340528-57340547 MS.gene04396:CDS 40.0%
! TGATTTGCAGTTTCGGACTT+GGG + chr3.4:57338779-57338798 None:intergenic 40.0%
!! ACATCAGCATGCTTTGAGAA+GGG - chr3.4:57340698-57340717 MS.gene04396:intron 40.0%
!! TTGATTTGCAGTTTCGGACT+TGG + chr3.4:57338780-57338799 None:intergenic 40.0%
AACATGCGACAAGATGCAAG+AGG - chr3.4:57340873-57340892 MS.gene04396:CDS 45.0%
AAGGAATGAGGATCTGACCT+CGG + chr3.4:57338803-57338822 None:intergenic 45.0%
ACCATTGGGACAATCAAGAG+AGG + chr3.4:57338912-57338931 None:intergenic 45.0%
AGGGTGAAAGAGTGGAAGAA+GGG - chr3.4:57340961-57340980 MS.gene04396:CDS 45.0%
AGGTTCTTGAGCCATCTCAA+GGG + chr3.4:57339774-57339793 None:intergenic 45.0%
ATGAATGTGGCCACATACAC+TGG + chr3.4:57340541-57340560 None:intergenic 45.0%
ATTGATTGCGACGACAAGAC+TGG + chr3.4:57340795-57340814 None:intergenic 45.0%
ATTGGAGGCTCAAGGAAGTT+AGG - chr3.4:57340350-57340369 MS.gene04396:intron 45.0%
CAGCCTAATTCTTGCAGACA+AGG + chr3.4:57340383-57340402 None:intergenic 45.0%
CTTGCATCTTGTCGCATGTT+GGG + chr3.4:57340873-57340892 None:intergenic 45.0%
GCAATCATGCCCCCATAATA+TGG + chr3.4:57339558-57339577 None:intergenic 45.0%
GCCACATACACTGGCAAAAT+TGG + chr3.4:57340532-57340551 None:intergenic 45.0%
GGATCAAACGAAAATGGTGG+TGG - chr3.4:57340894-57340913 MS.gene04396:CDS 45.0%
GGTTCAGAATAAACACCACC+GGG + chr3.4:57338830-57338849 None:intergenic 45.0%
GTAGTTGCATGCATTTGGAC+TGG - chr3.4:57339467-57339486 MS.gene04396:intron 45.0%
GTCCAATAGCGAGATGAATG+AGG - chr3.4:57338964-57338983 MS.gene04396:CDS 45.0%
GTGCTAAAGCAGAGCTTGAA+AGG - chr3.4:57339846-57339865 MS.gene04396:intron 45.0%
TAATGTCACATACCAACGGC+TGG + chr3.4:57339593-57339612 None:intergenic 45.0%
TCCTCTCTTGATTGTCCCAA+TGG - chr3.4:57338908-57338927 MS.gene04396:CDS 45.0%
TCTCGCTATTGGACAAAGAC+TGG + chr3.4:57338958-57338977 None:intergenic 45.0%
TCTTGCATCTTGTCGCATGT+TGG + chr3.4:57340874-57340893 None:intergenic 45.0%
! AAGGTATCAGGGTGAAAGAG+TGG - chr3.4:57340953-57340972 MS.gene04396:CDS 45.0%
! ACTTTTGCCTTCAGACTCTG+CGG - chr3.4:57340833-57340852 MS.gene04396:CDS 45.0%
! GCATGAGGCACTCCTATAAA+AGG + chr3.4:57339737-57339756 None:intergenic 45.0%
! GGAAGATGATGATGCTGCTA+AGG - chr3.4:57338985-57339004 MS.gene04396:CDS 45.0%
! TGAGGCACTCCTATAAAAGG+AGG + chr3.4:57339734-57339753 None:intergenic 45.0%
! TGCAAAGAAAACTGATGGCG+AGG - chr3.4:57340743-57340762 MS.gene04396:intron 45.0%
! TGCATGCATTTGGACTGGAT+GGG - chr3.4:57339472-57339491 MS.gene04396:intron 45.0%
! TTGCATGCATTTGGACTGGA+TGG - chr3.4:57339471-57339490 MS.gene04396:intron 45.0%
!! CCTCGGTTGATTTGCAGTTT+CGG + chr3.4:57338786-57338805 None:intergenic 45.0%
!! GACATCAGCATGCTTTGAGA+AGG - chr3.4:57340697-57340716 MS.gene04396:intron 45.0%
!! AGTAAAAAAATAAATAAATA+TGG + chr3.4:57339700-57339719 None:intergenic 5.0%
!!! TATTTATTTTTTTACTATTA+GGG - chr3.4:57339704-57339723 MS.gene04396:intron 5.0%
!!! TTATTTATTTTTTTACTATT+AGG - chr3.4:57339703-57339722 MS.gene04396:intron 5.0%
AAGCTCTCAGATGCAGGTAG+TGG - chr3.4:57340411-57340430 MS.gene04396:intron 50.0%
AATGCCTTTGCCCCTTGAGA+TGG - chr3.4:57339760-57339779 MS.gene04396:intron 50.0%
ACTCCTCAGCTGGAACTTGT+TGG - chr3.4:57339271-57339290 MS.gene04396:intron 50.0%
AGAGCCATTATCCTTTCCCG+AGG + chr3.4:57340769-57340788 None:intergenic 50.0%
ATAAACACCACCGGGCTGAA+AGG + chr3.4:57338822-57338841 None:intergenic 50.0%
CAGGGTGAAAGAGTGGAAGA+AGG - chr3.4:57340960-57340979 MS.gene04396:CDS 50.0%
CAGGTTCTTGAGCCATCTCA+AGG + chr3.4:57339775-57339794 None:intergenic 50.0%
CCAGACATTGTTTGCGCTAC+AGG + chr3.4:57338878-57338897 None:intergenic 50.0%
CCGAAACTGCAAATCAACCG+AGG - chr3.4:57338783-57338802 MS.gene04396:CDS 50.0%
CCTGTAGCGCAAACAATGTC+TGG - chr3.4:57338875-57338894 MS.gene04396:CDS 50.0%
GATCCTCATTCCTTTCAGCC+CGG - chr3.4:57338809-57338828 MS.gene04396:CDS 50.0%
GATCTGCTATTGGAGGCTCA+AGG - chr3.4:57340342-57340361 MS.gene04396:intron 50.0%
GGGTGAAAGAGTGGAAGAAG+GGG - chr3.4:57340962-57340981 MS.gene04396:CDS 50.0%
GGTTCTTGAGCCATCTCAAG+GGG + chr3.4:57339773-57339792 None:intergenic 50.0%
GTCTTCGCCTCAGAATTCCT+TGG + chr3.4:57339820-57339839 None:intergenic 50.0%
TCGCATGTTGGGAGAATTCC+AGG + chr3.4:57340862-57340881 None:intergenic 50.0%
TGACCAACAAGTTCCAGCTG+AGG + chr3.4:57339277-57339296 None:intergenic 50.0%
TGGAAGAAGGGGACTGTTCA+GGG - chr3.4:57340973-57340992 MS.gene04396:CDS 50.0%
! TCGGGAAAGGATAATGGCTC+TGG - chr3.4:57340768-57340787 MS.gene04396:intron 50.0%
! TCTGTGTGAGGCATTCTTCG+CGG + chr3.4:57339252-57339271 None:intergenic 50.0%
!! CAAAGACTGGCCTTCCTCAT+TGG + chr3.4:57338945-57338964 None:intergenic 50.0%
!! CATGCTTTGAGAAGGGCAAG+AGG - chr3.4:57340705-57340724 MS.gene04396:intron 50.0%
!! TATTCTGAACCTTGGTGGCG+TGG - chr3.4:57338839-57338858 MS.gene04396:CDS 50.0%
AGCTTATCCTCACCAGCCGT+TGG - chr3.4:57339578-57339597 MS.gene04396:intron 55.0%
CAGGTTTCCGCAGAGTCTGA+AGG + chr3.4:57340843-57340862 None:intergenic 55.0%
CCTGATTGATTGGGAGCAGC+AGG + chr3.4:57339019-57339038 None:intergenic 55.0%
CCTGCTGCTCCCAATCAATC+AGG - chr3.4:57339016-57339035 MS.gene04396:CDS 55.0%
CTTCAGACTCTGCGGAAACC+TGG - chr3.4:57340841-57340860 MS.gene04396:CDS 55.0%
GAGGCCTCGGGAAAGGATAA+TGG - chr3.4:57340762-57340781 MS.gene04396:intron 55.0%
GTGGAAGAAGGGGACTGTTC+AGG - chr3.4:57340972-57340991 MS.gene04396:CDS 55.0%
TATCCAACACCACGCCACCA+AGG + chr3.4:57338851-57338870 None:intergenic 55.0%
TCACATACCAACGGCTGGTG+AGG + chr3.4:57339588-57339607 None:intergenic 55.0%
TGAGCCATCTCAAGGGGCAA+AGG + chr3.4:57339767-57339786 None:intergenic 55.0%
! AAAACTGATGGCGAGGCCTC+GGG - chr3.4:57340750-57340769 MS.gene04396:intron 55.0%
! GAAAACTGATGGCGAGGCCT+CGG - chr3.4:57340749-57340768 MS.gene04396:intron 55.0%
! TTGAGAAGGGCAAGAGGCAC+CGG - chr3.4:57340711-57340730 MS.gene04396:intron 55.0%
!! CTCAAGGGGCAAAGGCATTC+TGG + chr3.4:57339759-57339778 None:intergenic 55.0%
!! GGCAAAGGCATTCTGGCATG+AGG + chr3.4:57339752-57339771 None:intergenic 55.0%
!! TGGAAGCATCTCCTCGAACG+AGG - chr3.4:57341004-57341023 MS.gene04396:CDS 55.0%
CCACCGGGCTGAAAGGAATG+AGG + chr3.4:57338815-57338834 None:intergenic 60.0%
CCAGCTGAGGAGTCTGTGTG+AGG + chr3.4:57339264-57339283 None:intergenic 60.0%
CCTCACACAGACTCCTCAGC+TGG - chr3.4:57339261-57339280 MS.gene04396:intron 60.0%
CCTCATTCCTTTCAGCCCGG+TGG - chr3.4:57338812-57338831 MS.gene04396:CDS 60.0%
GACTGTTCAGGGCAGCTACG+TGG - chr3.4:57340984-57341003 MS.gene04396:CDS 60.0%
!! GAACCTTGGTGGCGTGGTGT+TGG - chr3.4:57338845-57338864 MS.gene04396:CDS 60.0%
CCTCTGCGATGCCTCGTTCG+AGG + chr3.4:57341018-57341037 None:intergenic 65.0%
! TGATGGCGAGGCCTCGGGAA+AGG - chr3.4:57340755-57340774 MS.gene04396:intron 65.0%
!! AGAAGGGCAAGAGGCACCGG+AGG - chr3.4:57340714-57340733 MS.gene04396:intron 65.0%
!! CCTCGAACGAGGCATCGCAG+AGG - chr3.4:57341015-57341034 MS.gene04396:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 57338770 57341055 57338770 ID=MS.gene04396
chr3.4 mRNA 57338770 57341055 57338770 ID=MS.gene04396.t1;Parent=MS.gene04396
chr3.4 exon 57340788 57341055 57340788 ID=MS.gene04396.t1.exon1;Parent=MS.gene04396.t1
chr3.4 CDS 57340788 57341055 57340788 ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1
chr3.4 exon 57340522 57340628 57340522 ID=MS.gene04396.t1.exon2;Parent=MS.gene04396.t1
chr3.4 CDS 57340522 57340628 57340522 ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1
chr3.4 exon 57340226 57340297 57340226 ID=MS.gene04396.t1.exon3;Parent=MS.gene04396.t1
chr3.4 CDS 57340226 57340297 57340226 ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1
chr3.4 exon 57339936 57340100 57339936 ID=MS.gene04396.t1.exon4;Parent=MS.gene04396.t1
chr3.4 CDS 57339936 57340100 57339936 ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1
chr3.4 exon 57338770 57339147 57338770 ID=MS.gene04396.t1.exon5;Parent=MS.gene04396.t1
chr3.4 CDS 57338770 57339147 57338770 ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1
Gene Sequence

>MS.gene04396

ATGCAACCCAAGTCCGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGCGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGTGCTTTAGAATATCGTGTAATTATTTACTAACAATTAAATAGGGGGGAAATAAACAGATTTGCACTTTAAACTAACATTTGATGAAAATTTTCCATTCCACCAAATACTATTGATTTAGAGGCACTAAAATACAGTTTTTTTTTCTTCTTCTTGATAGGAAATTACGGACAAGAACAAGGAATGCAGAACACTGCATCATCTGCAGTTATCCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGTAAGTCTTTGCCTAAGCTTTATTGTTTTTTTTCCCCAATTGCTTTCAAGTTGTTAAGATAAACATTTTTTGCAAACATCAAATCAGTAACTTTATTCTGGAACACAAATCTTTGCTGATTCGTGCATATAATTTCAATGGAAAATATGTTATTATAGAGCTTGTAGTTGCATGCATTTGGACTGGATGGGACTCCTAGTATTCTTCCAATTCTTTTGATGCAGGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATTGCAGCTTATCCTCACCAGCCGTTGGTATGTGACATTAATCTGTTACTTGCTTCAAGGTTATTGCCATTTTGTTCTATTTTCTTGATTAATGGTAATATTTGGATAACATTGTGATATTTAACCATATTTATTTATTTTTTTACTATTAGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAACGCTAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGGTACGAATTCGTAAGAGCTAATGCTTCTTTATGATATTTTCCTTTCCTTTGGGATATTTGTCTTTTTTATATGGAGAAAGGCTTCTGTCTACCTTTTTCACAATTTCATACGACCGTTGCTTAGTCTTTATATGGAATATTTTAAAAATATATATCAGCGTGCATGTAGTAGCAAGTCTGTGTATGTTATATGCGCTGTTGTCTGTAAGGAGAAACTATAAATGTTTCTAATATATAGGACTCAACCATAGAGCCTTTGATTTTTTTTTAAGCAGTAATGTTTGTTGTATCCATTAATATGCTGTATTGACGGCGACAAAAGTCAGTTCTTGTTTACTTAATTAGAATTATGTAAAAACATTCCTTCAAAAAAAAAAAAATGTAAAAACATTTGTGAACAACAATCACCCACTTTTGAAACAAGCAACAACATCTAATTTAATGTTTAGATGGATCTGCTATTGGAGGCTCAAGGAAGTTAGGATTGTATCCTTGTCTGCAAGAATTAGGCTGTAAAAAATAAGCTCTCAGATGCAGGTAGTGGTAATTATATATTATTGCACAAATGTCAAGAAAAATGGTATTTGAAATTAGATTTCTAAAATGATTTTACTACATAAACTTTTTGTGGGTTCCACTCCAATTTTGCCAGTGTATGTGGCCACATTCATGTAAAATGAGAAAAGCAAATAGAGCTAAGTTGCTGATTTTCACCATTTTTTACTTGCATGAGTCCAGAATATGTTTCAAGTGAGACAGAACTTGATGCTAACATCTATTATTTTCAGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGCGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAACGAAAATGGTGGTGGCTCCTACCATAACAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG

Protein sequence

>MS.gene04396.t1

MQPKSETANQPRSDPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSAVIREECLTQTPQLELVGHSIACATNPYQDPYYGGMIAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNGMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ