Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04396.t1 | AES70718.2 | 97 | 329 | 10 | 0 | 1 | 329 | 21 | 349 | 7.00E-164 | 586.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04396.t1 | Q9LXV5 | 53.5 | 273 | 117 | 8 | 1 | 268 | 1 | 268 | 1.4e-59 | 231.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04396.t1 | G7IYA5 | 97.0 | 329 | 10 | 0 | 1 | 329 | 1 | 329 | 5.0e-164 | 586.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene04396.t1 | TF | NF-YA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04396.t1 | MTR_3g061510 | 98.480 | 329 | 5 | 0 | 1 | 329 | 1 | 329 | 0.0 | 664 |
MS.gene04396.t1 | MTR_3g061510 | 98.480 | 329 | 5 | 0 | 1 | 329 | 21 | 349 | 0.0 | 663 |
MS.gene04396.t1 | MTR_8g037270 | 46.445 | 211 | 87 | 7 | 20 | 226 | 21 | 209 | 1.82e-46 | 159 |
MS.gene04396.t1 | MTR_2g041090 | 60.577 | 104 | 36 | 3 | 128 | 226 | 30 | 133 | 1.54e-35 | 129 |
MS.gene04396.t1 | MTR_2g030170 | 56.731 | 104 | 40 | 1 | 144 | 242 | 81 | 184 | 2.08e-32 | 120 |
MS.gene04396.t1 | MTR_8g019540 | 54.717 | 106 | 44 | 2 | 124 | 226 | 116 | 220 | 4.01e-32 | 122 |
MS.gene04396.t1 | MTR_2g099490 | 54.545 | 121 | 50 | 3 | 112 | 229 | 114 | 232 | 1.99e-31 | 120 |
MS.gene04396.t1 | MTR_7g106450 | 42.105 | 190 | 87 | 8 | 104 | 285 | 106 | 280 | 9.11e-31 | 119 |
MS.gene04396.t1 | MTR_2g030170 | 59.551 | 89 | 36 | 0 | 154 | 242 | 129 | 217 | 1.04e-30 | 116 |
MS.gene04396.t1 | MTR_2g099490 | 48.889 | 135 | 52 | 3 | 112 | 229 | 114 | 248 | 3.06e-29 | 115 |
MS.gene04396.t1 | MTR_1g056530 | 50.427 | 117 | 44 | 4 | 124 | 237 | 126 | 231 | 1.41e-27 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04396.t1 | AT5G12840 | 55.469 | 256 | 106 | 6 | 16 | 268 | 17 | 267 | 3.63e-85 | 258 |
MS.gene04396.t1 | AT5G12840 | 55.469 | 256 | 106 | 6 | 16 | 268 | 17 | 267 | 3.63e-85 | 258 |
MS.gene04396.t1 | AT5G12840 | 55.253 | 257 | 106 | 7 | 16 | 268 | 17 | 268 | 2.44e-83 | 253 |
MS.gene04396.t1 | AT5G12840 | 55.253 | 257 | 106 | 7 | 16 | 268 | 17 | 268 | 2.44e-83 | 253 |
MS.gene04396.t1 | AT5G12840 | 55.253 | 257 | 106 | 7 | 16 | 268 | 17 | 268 | 2.44e-83 | 253 |
MS.gene04396.t1 | AT3G20910 | 58.904 | 219 | 60 | 7 | 116 | 329 | 110 | 303 | 1.95e-73 | 229 |
MS.gene04396.t1 | AT1G30500 | 59.091 | 110 | 40 | 3 | 124 | 231 | 52 | 158 | 4.01e-33 | 121 |
MS.gene04396.t1 | AT1G30500 | 56.757 | 111 | 45 | 2 | 124 | 231 | 52 | 162 | 4.27e-32 | 119 |
MS.gene04396.t1 | AT1G72830 | 57.143 | 98 | 39 | 2 | 132 | 226 | 137 | 234 | 4.21e-31 | 120 |
MS.gene04396.t1 | AT2G34720 | 45.714 | 140 | 70 | 2 | 125 | 258 | 48 | 187 | 5.23e-31 | 116 |
MS.gene04396.t1 | AT2G34720 | 47.015 | 134 | 65 | 2 | 131 | 258 | 19 | 152 | 4.56e-30 | 112 |
MS.gene04396.t1 | AT2G34720 | 47.015 | 134 | 65 | 2 | 131 | 258 | 19 | 152 | 4.56e-30 | 112 |
MS.gene04396.t1 | AT1G72830 | 56.566 | 99 | 39 | 3 | 132 | 226 | 137 | 235 | 2.06e-29 | 115 |
MS.gene04396.t1 | AT1G17590 | 56.701 | 97 | 36 | 3 | 132 | 226 | 135 | 227 | 3.65e-29 | 114 |
MS.gene04396.t1 | AT1G17590 | 56.701 | 97 | 36 | 3 | 132 | 226 | 135 | 227 | 3.65e-29 | 114 |
MS.gene04396.t1 | AT1G17590 | 56.701 | 97 | 36 | 3 | 132 | 226 | 135 | 227 | 3.65e-29 | 114 |
MS.gene04396.t1 | AT1G17590 | 56.701 | 97 | 36 | 3 | 132 | 226 | 135 | 227 | 3.65e-29 | 114 |
MS.gene04396.t1 | AT1G54160 | 43.066 | 137 | 68 | 3 | 95 | 226 | 102 | 233 | 8.14e-29 | 113 |
MS.gene04396.t1 | AT3G14020 | 54.167 | 96 | 39 | 3 | 135 | 226 | 132 | 226 | 7.43e-27 | 108 |
MS.gene04396.t1 | AT3G14020 | 54.167 | 96 | 39 | 3 | 135 | 226 | 132 | 226 | 7.43e-27 | 108 |
MS.gene04396.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 3.96e-22 | 94.4 |
MS.gene04396.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 3.96e-22 | 94.4 |
MS.gene04396.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 3.96e-22 | 94.4 |
MS.gene04396.t1 | AT5G06510 | 31.776 | 214 | 110 | 8 | 27 | 235 | 13 | 195 | 3.96e-22 | 94.4 |
MS.gene04396.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 130 | 235 | 5 | 100 | 5.54e-22 | 91.7 |
MS.gene04396.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 130 | 235 | 5 | 100 | 5.54e-22 | 91.7 |
MS.gene04396.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 130 | 235 | 51 | 146 | 2.35e-21 | 90.9 |
MS.gene04396.t1 | AT3G05690 | 44.928 | 138 | 55 | 6 | 114 | 242 | 88 | 213 | 3.60e-21 | 92.0 |
MS.gene04396.t1 | AT3G05690 | 34.468 | 235 | 110 | 11 | 22 | 242 | 46 | 250 | 6.56e-21 | 92.0 |
MS.gene04396.t1 | AT1G72830 | 48.421 | 95 | 27 | 2 | 132 | 226 | 137 | 209 | 6.65e-19 | 86.3 |
Find 107 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTATCAGGATCCATATTA+TGG | 0.185298 | 3.4:-57340260 | MS.gene04396:CDS |
TTCCTCATTCATCTCGCTAT+TGG | 0.264449 | 3.4:+57340837 | None:intergenic |
CCTCGGTTGATTTGCAGTTT+CGG | 0.272870 | 3.4:+57341020 | None:intergenic |
TTGATTTGCAGTTTCGGACT+TGG | 0.313960 | 3.4:+57341026 | None:intergenic |
CTCAAGGGGCAAAGGCATTC+TGG | 0.314340 | 3.4:+57340047 | None:intergenic |
GTGGAAGAAGGGGACTGTTC+AGG | 0.315135 | 3.4:-57338831 | MS.gene04396:CDS |
GCATGAGGCACTCCTATAAA+AGG | 0.333358 | 3.4:+57340069 | None:intergenic |
TATGCAATCTTCAAGGTATC+AGG | 0.338770 | 3.4:-57338862 | MS.gene04396:CDS |
TTCTAAAGCACCTGATTGAT+TGG | 0.345684 | 3.4:+57340777 | None:intergenic |
CCAGACATTGTTTGCGCTAC+AGG | 0.346287 | 3.4:+57340928 | None:intergenic |
TGTTTAGCGTTCACATAAAC+AGG | 0.347626 | 3.4:+57340012 | None:intergenic |
TTCTTCTTGATAGGAAATTA+CGG | 0.354225 | 3.4:-57340619 | MS.gene04396:intron |
CAAAGACTGGCCTTCCTCAT+TGG | 0.355087 | 3.4:+57340861 | None:intergenic |
TCGCATGTTGGGAGAATTCC+AGG | 0.360834 | 3.4:+57338944 | None:intergenic |
GCAAGAGGATCAAACGAAAA+TGG | 0.361215 | 3.4:-57338915 | MS.gene04396:CDS |
GCATACCATTGTTGTTGTTA+TGG | 0.371144 | 3.4:+57338880 | None:intergenic |
ATGTGCTACAAATCCTTATC+AGG | 0.378434 | 3.4:-57340273 | MS.gene04396:CDS |
GAAAACTGATGGCGAGGCCT+CGG | 0.385763 | 3.4:-57339054 | MS.gene04396:CDS |
CTTGCATCTTGTCGCATGTT+GGG | 0.394811 | 3.4:+57338933 | None:intergenic |
CTTATCAGGATCCATATTAT+GGG | 0.407754 | 3.4:-57340259 | MS.gene04396:CDS |
TCGCAATCAATTAGTTCATC+TGG | 0.408092 | 3.4:-57338999 | MS.gene04396:CDS |
GAGGCCTCGGGAAAGGATAA+TGG | 0.413220 | 3.4:-57339041 | MS.gene04396:CDS |
CCTGTAGCGCAAACAATGTC+TGG | 0.435636 | 3.4:-57340928 | MS.gene04396:CDS |
ACAATCAAGAGAGGATGAAT+TGG | 0.445592 | 3.4:+57340903 | None:intergenic |
TCCTCTCTTGATTGTCCCAA+TGG | 0.445841 | 3.4:-57340895 | MS.gene04396:CDS |
TGTCTAGATTCATGAAGATA+TGG | 0.448950 | 3.4:+57339125 | None:intergenic |
CCATAATATGGATCCTGATA+AGG | 0.451848 | 3.4:+57340260 | None:intergenic |
CTTCAGACTCTGCGGAAACC+TGG | 0.454407 | 3.4:-57338962 | MS.gene04396:CDS |
TCTAAAGCACCTGATTGATT+GGG | 0.457401 | 3.4:+57340778 | None:intergenic |
CCTCTGCGATGCCTCGTTCG+AGG | 0.460703 | 3.4:+57338788 | None:intergenic |
TCTTGCATCTTGTCGCATGT+TGG | 0.462937 | 3.4:+57338932 | None:intergenic |
TGATTTGCAGTTTCGGACTT+GGG | 0.466356 | 3.4:+57341027 | None:intergenic |
TGGAAGAAGGGGACTGTTCA+GGG | 0.467131 | 3.4:-57338830 | MS.gene04396:CDS |
TTGAGAAGGGCAAGAGGCAC+CGG | 0.467176 | 3.4:-57339092 | MS.gene04396:CDS |
CCTGCTGCTCCCAATCAATC+AGG | 0.469165 | 3.4:-57340787 | MS.gene04396:intron |
CCTGATTGATTGGGAGCAGC+AGG | 0.471231 | 3.4:+57340787 | None:intergenic |
AATGCCTTTGCCCCTTGAGA+TGG | 0.476507 | 3.4:-57340043 | MS.gene04396:CDS |
GTCTTCGCCTCAGAATTCCT+TGG | 0.480874 | 3.4:+57339986 | None:intergenic |
ATTGATTGCGACGACAAGAC+TGG | 0.480972 | 3.4:+57339011 | None:intergenic |
AAAACTGATGGCGAGGCCTC+GGG | 0.486871 | 3.4:-57339053 | MS.gene04396:CDS |
ACTCCTCAGCTGGAACTTGT+TGG | 0.498120 | 3.4:-57340532 | MS.gene04396:CDS |
TCGGGAAAGGATAATGGCTC+TGG | 0.498937 | 3.4:-57339035 | MS.gene04396:CDS |
ATTGGATTCTGAATCACCAT+TGG | 0.502864 | 3.4:+57340879 | None:intergenic |
CAGGGTGAAAGAGTGGAAGA+AGG | 0.503255 | 3.4:-57338843 | MS.gene04396:CDS |
TTGGATTCTGAATCACCATT+GGG | 0.505994 | 3.4:+57340880 | None:intergenic |
TTTCTTTGCAAATCGTCCTC+CGG | 0.509061 | 3.4:+57339073 | None:intergenic |
GAACCTTGGTGGCGTGGTGT+TGG | 0.516801 | 3.4:-57340958 | MS.gene04396:CDS |
CCTCACACAGACTCCTCAGC+TGG | 0.517659 | 3.4:-57340542 | MS.gene04396:CDS |
GAAGCTCATAAAATCTAGAA+AGG | 0.519482 | 3.4:-57339935 | MS.gene04396:intron |
GTGCTAAAGCAGAGCTTGAA+AGG | 0.520912 | 3.4:-57339957 | MS.gene04396:CDS |
ACCATTGTTGTTGTTATGGT+AGG | 0.521132 | 3.4:+57338884 | None:intergenic |
AGGGTGAAAGAGTGGAAGAA+GGG | 0.525419 | 3.4:-57338842 | MS.gene04396:CDS |
ACAATGGTATGCAATCTTCA+AGG | 0.528717 | 3.4:-57338869 | MS.gene04396:CDS |
AGCTTATCCTCACCAGCCGT+TGG | 0.530288 | 3.4:-57340225 | MS.gene04396:intron |
TGATGGCGAGGCCTCGGGAA+AGG | 0.533639 | 3.4:-57339048 | MS.gene04396:CDS |
GTGGTGTTTATTCTGAACCT+TGG | 0.535143 | 3.4:-57340972 | MS.gene04396:CDS |
TCTCGCTATTGGACAAAGAC+TGG | 0.535979 | 3.4:+57340848 | None:intergenic |
CAGGTTCTTGAGCCATCTCA+AGG | 0.541180 | 3.4:+57340031 | None:intergenic |
GACATCAGCATGCTTTGAGA+AGG | 0.559068 | 3.4:-57339106 | MS.gene04396:CDS |
TGAGCCATCTCAAGGGGCAA+AGG | 0.560137 | 3.4:+57340039 | None:intergenic |
CAGGTTTCCGCAGAGTCTGA+AGG | 0.567519 | 3.4:+57338963 | None:intergenic |
GATCCTCATTCCTTTCAGCC+CGG | 0.568473 | 3.4:-57340994 | MS.gene04396:CDS |
ATAAACACCACCGGGCTGAA+AGG | 0.570819 | 3.4:+57340984 | None:intergenic |
TCTGTGTGAGGCATTCTTCG+CGG | 0.575950 | 3.4:+57340554 | None:intergenic |
TCACATACCAACGGCTGGTG+AGG | 0.579630 | 3.4:+57340218 | None:intergenic |
AAGGTATCAGGGTGAAAGAG+TGG | 0.579884 | 3.4:-57338850 | MS.gene04396:CDS |
GTGTTTATTCTGAACCTTGG+TGG | 0.581264 | 3.4:-57340969 | MS.gene04396:CDS |
AGGTTCAGAATAAACACCAC+CGG | 0.582494 | 3.4:+57340975 | None:intergenic |
GGAAGATGATGATGCTGCTA+AGG | 0.583652 | 3.4:-57340818 | MS.gene04396:CDS |
TAATGTCACATACCAACGGC+TGG | 0.588332 | 3.4:+57340213 | None:intergenic |
TATTCTGAACCTTGGTGGCG+TGG | 0.589853 | 3.4:-57340964 | MS.gene04396:CDS |
GGATCAAACGAAAATGGTGG+TGG | 0.592838 | 3.4:-57338909 | MS.gene04396:CDS |
ATGCAATCTTCAAGGTATCA+GGG | 0.599536 | 3.4:-57338861 | MS.gene04396:CDS |
GGAAATTACGGACAAGAACA+AGG | 0.600249 | 3.4:-57340607 | MS.gene04396:CDS |
TTATCAGGATCCATATTATG+GGG | 0.600718 | 3.4:-57340258 | MS.gene04396:CDS |
GTCCAATAGCGAGATGAATG+AGG | 0.601303 | 3.4:-57340839 | MS.gene04396:CDS |
TGCAAAGAAAACTGATGGCG+AGG | 0.605058 | 3.4:-57339060 | MS.gene04396:CDS |
AGGTTCTTGAGCCATCTCAA+GGG | 0.605218 | 3.4:+57340032 | None:intergenic |
CCTCATTCCTTTCAGCCCGG+TGG | 0.605967 | 3.4:-57340991 | MS.gene04396:CDS |
CATGCTTTGAGAAGGGCAAG+AGG | 0.607747 | 3.4:-57339098 | MS.gene04396:CDS |
GGTTCTTGAGCCATCTCAAG+GGG | 0.609159 | 3.4:+57340033 | None:intergenic |
CGATTTGCAAAGAAAACTGA+TGG | 0.615729 | 3.4:-57339065 | MS.gene04396:CDS |
GATTCAGAATCCAATGAGGA+AGG | 0.616324 | 3.4:-57340871 | MS.gene04396:CDS |
ACATCAGCATGCTTTGAGAA+GGG | 0.618856 | 3.4:-57339105 | MS.gene04396:CDS |
GACTGTTCAGGGCAGCTACG+TGG | 0.623934 | 3.4:-57338819 | MS.gene04396:CDS |
TCCTACCATAACAACAACAA+TGG | 0.624469 | 3.4:-57338885 | MS.gene04396:CDS |
CCACCGGGCTGAAAGGAATG+AGG | 0.626610 | 3.4:+57340991 | None:intergenic |
GGCAAAGGCATTCTGGCATG+AGG | 0.634023 | 3.4:+57340054 | None:intergenic |
AGAAGGGCAAGAGGCACCGG+AGG | 0.637214 | 3.4:-57339089 | MS.gene04396:CDS |
GGGTGAAAGAGTGGAAGAAG+GGG | 0.642943 | 3.4:-57338841 | MS.gene04396:CDS |
CCAGCTGAGGAGTCTGTGTG+AGG | 0.649225 | 3.4:+57340542 | None:intergenic |
GGTTCAGAATAAACACCACC+GGG | 0.650774 | 3.4:+57340976 | None:intergenic |
AACAATACCAAGGAATTCTG+AGG | 0.651910 | 3.4:-57339993 | MS.gene04396:CDS |
AGAGCCATTATCCTTTCCCG+AGG | 0.653284 | 3.4:+57339037 | None:intergenic |
ACCATTGGGACAATCAAGAG+AGG | 0.663692 | 3.4:+57340894 | None:intergenic |
TGAGGCACTCCTATAAAAGG+AGG | 0.667807 | 3.4:+57340072 | None:intergenic |
TGGAAGCATCTCCTCGAACG+AGG | 0.669556 | 3.4:-57338799 | MS.gene04396:CDS |
AAGGAATGAGGATCTGACCT+CGG | 0.671701 | 3.4:+57341003 | None:intergenic |
TGACCAACAAGTTCCAGCTG+AGG | 0.675734 | 3.4:+57340529 | None:intergenic |
TATCAGGATCCATATTATGG+GGG | 0.690554 | 3.4:-57340257 | MS.gene04396:CDS |
AGAGGATCAAACGAAAATGG+TGG | 0.692972 | 3.4:-57338912 | MS.gene04396:CDS |
GTGAACGCTAAACAATACCA+AGG | 0.697540 | 3.4:-57340003 | MS.gene04396:CDS |
AACATGCGACAAGATGCAAG+AGG | 0.706089 | 3.4:-57338930 | MS.gene04396:CDS |
TATCCAACACCACGCCACCA+AGG | 0.707510 | 3.4:+57340955 | None:intergenic |
TGGTGATTCAGAATCCAATG+AGG | 0.715370 | 3.4:-57340875 | MS.gene04396:CDS |
CCTCGAACGAGGCATCGCAG+AGG | 0.718093 | 3.4:-57338788 | MS.gene04396:CDS |
CCGAAACTGCAAATCAACCG+AGG | 0.722272 | 3.4:-57341020 | MS.gene04396:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTACTAACAATTAAATA+GGG | - | chr3.4:57339060-57339079 | MS.gene04396:CDS | 10.0% |
!! | TTATTTACTAACAATTAAAT+AGG | - | chr3.4:57339059-57339078 | MS.gene04396:CDS | 10.0% |
!!! | TATAAATGTTTCTAATATAT+AGG | - | chr3.4:57340106-57340125 | MS.gene04396:intron | 10.0% |
!!! | TTACATTTTTTTTTTTTTGA+AGG | + | chr3.4:57340255-57340274 | None:intergenic | 10.0% |
!! | ATTTACTAACAATTAAATAG+GGG | - | chr3.4:57339061-57339080 | MS.gene04396:CDS | 15.0% |
!! | ACTGCTTAAAAAAAAATCAA+AGG | + | chr3.4:57340146-57340165 | None:intergenic | 20.0% |
!! | ATCAAGAAAATAGAACAAAA+TGG | + | chr3.4:57339642-57339661 | None:intergenic | 20.0% |
!! | CATCTAATTTAATGTTTAGA+TGG | - | chr3.4:57340320-57340339 | MS.gene04396:intron | 20.0% |
!! | GAAAAAAAACAATAAAGCTT+AGG | + | chr3.4:57339318-57339337 | None:intergenic | 20.0% |
!! | TCTTGATTAATGGTAATATT+TGG | - | chr3.4:57339655-57339674 | MS.gene04396:intron | 20.0% |
!! | TTTACTAACAATTAAATAGG+GGG | - | chr3.4:57339062-57339081 | MS.gene04396:CDS | 20.0% |
!!! | GGATATTTGTCTTTTTTATA+TGG | - | chr3.4:57339941-57339960 | MS.gene04396:CDS | 20.0% |
!!! | TGTTCTATTTTCTTGATTAA+TGG | - | chr3.4:57339645-57339664 | MS.gene04396:intron | 20.0% |
!!! | TTACTACATAAACTTTTTGT+GGG | - | chr3.4:57340499-57340518 | MS.gene04396:intron | 20.0% |
!!! | TTTACTACATAAACTTTTTG+TGG | - | chr3.4:57340498-57340517 | MS.gene04396:intron | 20.0% |
!!! | TTTTTTTTCTTCTTCTTGAT+AGG | - | chr3.4:57339175-57339194 | MS.gene04396:intron | 20.0% |
! | AAAAAAAATCAAAGGCTCTA+TGG | + | chr3.4:57340138-57340157 | None:intergenic | 25.0% |
! | AAAAAAGACAAATATCCCAA+AGG | + | chr3.4:57339938-57339957 | None:intergenic | 25.0% |
! | AAAAGAATTGGAAGAATACT+AGG | + | chr3.4:57339501-57339520 | None:intergenic | 25.0% |
! | ATTCGTGCATATAATTTCAA+TGG | - | chr3.4:57339422-57339441 | MS.gene04396:intron | 25.0% |
! | TCAAATCAGTAACTTTATTC+TGG | - | chr3.4:57339382-57339401 | MS.gene04396:intron | 25.0% |
! | TCTAAATCAATAGTATTTGG+TGG | + | chr3.4:57339139-57339158 | None:intergenic | 25.0% |
! | TTAACAACTTGAAAGCAATT+GGG | + | chr3.4:57339341-57339360 | None:intergenic | 25.0% |
! | TTACTAACAATTAAATAGGG+GGG | - | chr3.4:57339063-57339082 | MS.gene04396:CDS | 25.0% |
! | TTCTTCTTGATAGGAAATTA+CGG | - | chr3.4:57339184-57339203 | MS.gene04396:intron | 25.0% |
!! | ATGATATTTTCCTTTCCTTT+GGG | - | chr3.4:57339920-57339939 | MS.gene04396:intron | 25.0% |
!! | TATGATATTTTCCTTTCCTT+TGG | - | chr3.4:57339919-57339938 | MS.gene04396:intron | 25.0% |
!! | TTTCTCATTTTACATGAATG+TGG | + | chr3.4:57340554-57340573 | None:intergenic | 25.0% |
!!! | ACCAAATACTATTGATTTAG+AGG | - | chr3.4:57339138-57339157 | MS.gene04396:intron | 25.0% |
!!! | TGTCTTTTTTATATGGAGAA+AGG | - | chr3.4:57339948-57339967 | MS.gene04396:CDS | 25.0% |
AGATTAATGTCACATACCAA+CGG | + | chr3.4:57339597-57339616 | None:intergenic | 30.0% | |
CCATTAATATGCTGTATTGA+CGG | - | chr3.4:57340180-57340199 | MS.gene04396:intron | 30.0% | |
CTTAACAACTTGAAAGCAAT+TGG | + | chr3.4:57339342-57339361 | None:intergenic | 30.0% | |
CTTATCAGGATCCATATTAT+GGG | - | chr3.4:57339544-57339563 | MS.gene04396:intron | 30.0% | |
GAAGCTCATAAAATCTAGAA+AGG | - | chr3.4:57339868-57339887 | MS.gene04396:intron | 30.0% | |
GCCTCTAAATCAATAGTATT+TGG | + | chr3.4:57339142-57339161 | None:intergenic | 30.0% | |
GTCGTATGAAATTGTGAAAA+AGG | + | chr3.4:57339984-57340003 | None:intergenic | 30.0% | |
TAACAACTTGAAAGCAATTG+GGG | + | chr3.4:57339340-57339359 | None:intergenic | 30.0% | |
TCCATATAAAGACTAAGCAA+CGG | + | chr3.4:57340006-57340025 | None:intergenic | 30.0% | |
TGCACAAATGTCAAGAAAAA+TGG | - | chr3.4:57340448-57340467 | MS.gene04396:intron | 30.0% | |
TGTCTAGATTCATGAAGATA+TGG | + | chr3.4:57340681-57340700 | None:intergenic | 30.0% | |
TTATCAGGATCCATATTATG+GGG | - | chr3.4:57339545-57339564 | MS.gene04396:intron | 30.0% | |
! | ATCAATAGTATTTGGTGGAA+TGG | + | chr3.4:57339134-57339153 | None:intergenic | 30.0% |
! | TTAATCTGTTACTTGCTTCA+AGG | - | chr3.4:57339610-57339629 | MS.gene04396:intron | 30.0% |
! | TTGTTGCTTGTTTCAAAAGT+GGG | + | chr3.4:57340300-57340319 | None:intergenic | 30.0% |
AAAAATAAGCTCTCAGATGC+AGG | - | chr3.4:57340405-57340424 | MS.gene04396:intron | 35.0% | |
AACAATACCAAGGAATTCTG+AGG | - | chr3.4:57339810-57339829 | MS.gene04396:intron | 35.0% | |
ACAATCAAGAGAGGATGAAT+TGG | + | chr3.4:57338903-57338922 | None:intergenic | 35.0% | |
ACAATGGTATGCAATCTTCA+AGG | - | chr3.4:57340934-57340953 | MS.gene04396:CDS | 35.0% | |
AGACAAATATCCCAAAGGAA+AGG | + | chr3.4:57339933-57339952 | None:intergenic | 35.0% | |
ATGTGCTACAAATCCTTATC+AGG | - | chr3.4:57339530-57339549 | MS.gene04396:intron | 35.0% | |
ATTGGATTCTGAATCACCAT+TGG | + | chr3.4:57338927-57338946 | None:intergenic | 35.0% | |
CCATAATATGGATCCTGATA+AGG | + | chr3.4:57339546-57339565 | None:intergenic | 35.0% | |
CCGTCAATACAGCATATTAA+TGG | + | chr3.4:57340183-57340202 | None:intergenic | 35.0% | |
CCTTATCAGGATCCATATTA+TGG | - | chr3.4:57339543-57339562 | MS.gene04396:intron | 35.0% | |
CGATTTGCAAAGAAAACTGA+TGG | - | chr3.4:57340738-57340757 | MS.gene04396:intron | 35.0% | |
GGACTCATGCAAGTAAAAAA+TGG | + | chr3.4:57340606-57340625 | None:intergenic | 35.0% | |
GTCTCACTTGAAACATATTC+TGG | + | chr3.4:57340627-57340646 | None:intergenic | 35.0% | |
TATCAGGATCCATATTATGG+GGG | - | chr3.4:57339546-57339565 | MS.gene04396:intron | 35.0% | |
TATCCTTGTCTGCAAGAATT+AGG | - | chr3.4:57340377-57340396 | MS.gene04396:intron | 35.0% | |
TCCTACCATAACAACAACAA+TGG | - | chr3.4:57340918-57340937 | MS.gene04396:CDS | 35.0% | |
TCGCAATCAATTAGTTCATC+TGG | - | chr3.4:57340804-57340823 | MS.gene04396:CDS | 35.0% | |
TGTTTAGATGGATCTGCTAT+TGG | - | chr3.4:57340332-57340351 | MS.gene04396:intron | 35.0% | |
TGTTTAGCGTTCACATAAAC+AGG | + | chr3.4:57339794-57339813 | None:intergenic | 35.0% | |
TTGGATTCTGAATCACCATT+GGG | + | chr3.4:57338926-57338945 | None:intergenic | 35.0% | |
! | ACCATTGTTGTTGTTATGGT+AGG | + | chr3.4:57340922-57340941 | None:intergenic | 35.0% |
! | ACCGTTGCTTAGTCTTTATA+TGG | - | chr3.4:57340002-57340021 | MS.gene04396:CDS | 35.0% |
! | ATGCAATCTTCAAGGTATCA+GGG | - | chr3.4:57340942-57340961 | MS.gene04396:CDS | 35.0% |
! | GCATACCATTGTTGTTGTTA+TGG | + | chr3.4:57340926-57340945 | None:intergenic | 35.0% |
! | GTTGTTGCTTGTTTCAAAAG+TGG | + | chr3.4:57340301-57340320 | None:intergenic | 35.0% |
! | TAGGGATATCCTCCTTTTAT+AGG | - | chr3.4:57339722-57339741 | MS.gene04396:intron | 35.0% |
! | TATGCAATCTTCAAGGTATC+AGG | - | chr3.4:57340941-57340960 | MS.gene04396:CDS | 35.0% |
! | TCTAAAGCACCTGATTGATT+GGG | + | chr3.4:57339028-57339047 | None:intergenic | 35.0% |
! | TCTTCCAATTCTTTTGATGC+AGG | - | chr3.4:57339506-57339525 | MS.gene04396:intron | 35.0% |
!! | TTCTAAAGCACCTGATTGAT+TGG | + | chr3.4:57339029-57339048 | None:intergenic | 35.0% |
AGAGGATCAAACGAAAATGG+TGG | - | chr3.4:57340891-57340910 | MS.gene04396:CDS | 40.0% | |
AGCTTGTAGTTGCATGCATT+TGG | - | chr3.4:57339462-57339481 | MS.gene04396:intron | 40.0% | |
AGGTTCAGAATAAACACCAC+CGG | + | chr3.4:57338831-57338850 | None:intergenic | 40.0% | |
ATACACTGGCAAAATTGGAG+TGG | + | chr3.4:57340527-57340546 | None:intergenic | 40.0% | |
CATGCCTGCATCAAAAGAAT+TGG | + | chr3.4:57339513-57339532 | None:intergenic | 40.0% | |
GATTCAGAATCCAATGAGGA+AGG | - | chr3.4:57338932-57338951 | MS.gene04396:CDS | 40.0% | |
GCAAGAGGATCAAACGAAAA+TGG | - | chr3.4:57340888-57340907 | MS.gene04396:CDS | 40.0% | |
GGAAATTACGGACAAGAACA+AGG | - | chr3.4:57339196-57339215 | MS.gene04396:intron | 40.0% | |
GTGAACGCTAAACAATACCA+AGG | - | chr3.4:57339800-57339819 | MS.gene04396:intron | 40.0% | |
GTGGTGTTTATTCTGAACCT+TGG | - | chr3.4:57338831-57338850 | MS.gene04396:CDS | 40.0% | |
GTGTTTATTCTGAACCTTGG+TGG | - | chr3.4:57338834-57338853 | MS.gene04396:CDS | 40.0% | |
TATATGCGCTGTTGTCTGTA+AGG | - | chr3.4:57340077-57340096 | MS.gene04396:CDS | 40.0% | |
TGGTGATTCAGAATCCAATG+AGG | - | chr3.4:57338928-57338947 | MS.gene04396:CDS | 40.0% | |
TTAGATGGATCTGCTATTGG+AGG | - | chr3.4:57340335-57340354 | MS.gene04396:intron | 40.0% | |
TTCCTCATTCATCTCGCTAT+TGG | + | chr3.4:57338969-57338988 | None:intergenic | 40.0% | |
TTTCTTTGCAAATCGTCCTC+CGG | + | chr3.4:57340733-57340752 | None:intergenic | 40.0% | |
! | TCCAATTTTGCCAGTGTATG+TGG | - | chr3.4:57340528-57340547 | MS.gene04396:CDS | 40.0% |
! | TGATTTGCAGTTTCGGACTT+GGG | + | chr3.4:57338779-57338798 | None:intergenic | 40.0% |
!! | ACATCAGCATGCTTTGAGAA+GGG | - | chr3.4:57340698-57340717 | MS.gene04396:intron | 40.0% |
!! | TTGATTTGCAGTTTCGGACT+TGG | + | chr3.4:57338780-57338799 | None:intergenic | 40.0% |
AACATGCGACAAGATGCAAG+AGG | - | chr3.4:57340873-57340892 | MS.gene04396:CDS | 45.0% | |
AAGGAATGAGGATCTGACCT+CGG | + | chr3.4:57338803-57338822 | None:intergenic | 45.0% | |
ACCATTGGGACAATCAAGAG+AGG | + | chr3.4:57338912-57338931 | None:intergenic | 45.0% | |
AGGGTGAAAGAGTGGAAGAA+GGG | - | chr3.4:57340961-57340980 | MS.gene04396:CDS | 45.0% | |
AGGTTCTTGAGCCATCTCAA+GGG | + | chr3.4:57339774-57339793 | None:intergenic | 45.0% | |
ATGAATGTGGCCACATACAC+TGG | + | chr3.4:57340541-57340560 | None:intergenic | 45.0% | |
ATTGATTGCGACGACAAGAC+TGG | + | chr3.4:57340795-57340814 | None:intergenic | 45.0% | |
ATTGGAGGCTCAAGGAAGTT+AGG | - | chr3.4:57340350-57340369 | MS.gene04396:intron | 45.0% | |
CAGCCTAATTCTTGCAGACA+AGG | + | chr3.4:57340383-57340402 | None:intergenic | 45.0% | |
CTTGCATCTTGTCGCATGTT+GGG | + | chr3.4:57340873-57340892 | None:intergenic | 45.0% | |
GCAATCATGCCCCCATAATA+TGG | + | chr3.4:57339558-57339577 | None:intergenic | 45.0% | |
GCCACATACACTGGCAAAAT+TGG | + | chr3.4:57340532-57340551 | None:intergenic | 45.0% | |
GGATCAAACGAAAATGGTGG+TGG | - | chr3.4:57340894-57340913 | MS.gene04396:CDS | 45.0% | |
GGTTCAGAATAAACACCACC+GGG | + | chr3.4:57338830-57338849 | None:intergenic | 45.0% | |
GTAGTTGCATGCATTTGGAC+TGG | - | chr3.4:57339467-57339486 | MS.gene04396:intron | 45.0% | |
GTCCAATAGCGAGATGAATG+AGG | - | chr3.4:57338964-57338983 | MS.gene04396:CDS | 45.0% | |
GTGCTAAAGCAGAGCTTGAA+AGG | - | chr3.4:57339846-57339865 | MS.gene04396:intron | 45.0% | |
TAATGTCACATACCAACGGC+TGG | + | chr3.4:57339593-57339612 | None:intergenic | 45.0% | |
TCCTCTCTTGATTGTCCCAA+TGG | - | chr3.4:57338908-57338927 | MS.gene04396:CDS | 45.0% | |
TCTCGCTATTGGACAAAGAC+TGG | + | chr3.4:57338958-57338977 | None:intergenic | 45.0% | |
TCTTGCATCTTGTCGCATGT+TGG | + | chr3.4:57340874-57340893 | None:intergenic | 45.0% | |
! | AAGGTATCAGGGTGAAAGAG+TGG | - | chr3.4:57340953-57340972 | MS.gene04396:CDS | 45.0% |
! | ACTTTTGCCTTCAGACTCTG+CGG | - | chr3.4:57340833-57340852 | MS.gene04396:CDS | 45.0% |
! | GCATGAGGCACTCCTATAAA+AGG | + | chr3.4:57339737-57339756 | None:intergenic | 45.0% |
! | GGAAGATGATGATGCTGCTA+AGG | - | chr3.4:57338985-57339004 | MS.gene04396:CDS | 45.0% |
! | TGAGGCACTCCTATAAAAGG+AGG | + | chr3.4:57339734-57339753 | None:intergenic | 45.0% |
! | TGCAAAGAAAACTGATGGCG+AGG | - | chr3.4:57340743-57340762 | MS.gene04396:intron | 45.0% |
! | TGCATGCATTTGGACTGGAT+GGG | - | chr3.4:57339472-57339491 | MS.gene04396:intron | 45.0% |
! | TTGCATGCATTTGGACTGGA+TGG | - | chr3.4:57339471-57339490 | MS.gene04396:intron | 45.0% |
!! | CCTCGGTTGATTTGCAGTTT+CGG | + | chr3.4:57338786-57338805 | None:intergenic | 45.0% |
!! | GACATCAGCATGCTTTGAGA+AGG | - | chr3.4:57340697-57340716 | MS.gene04396:intron | 45.0% |
!! | AGTAAAAAAATAAATAAATA+TGG | + | chr3.4:57339700-57339719 | None:intergenic | 5.0% |
!!! | TATTTATTTTTTTACTATTA+GGG | - | chr3.4:57339704-57339723 | MS.gene04396:intron | 5.0% |
!!! | TTATTTATTTTTTTACTATT+AGG | - | chr3.4:57339703-57339722 | MS.gene04396:intron | 5.0% |
AAGCTCTCAGATGCAGGTAG+TGG | - | chr3.4:57340411-57340430 | MS.gene04396:intron | 50.0% | |
AATGCCTTTGCCCCTTGAGA+TGG | - | chr3.4:57339760-57339779 | MS.gene04396:intron | 50.0% | |
ACTCCTCAGCTGGAACTTGT+TGG | - | chr3.4:57339271-57339290 | MS.gene04396:intron | 50.0% | |
AGAGCCATTATCCTTTCCCG+AGG | + | chr3.4:57340769-57340788 | None:intergenic | 50.0% | |
ATAAACACCACCGGGCTGAA+AGG | + | chr3.4:57338822-57338841 | None:intergenic | 50.0% | |
CAGGGTGAAAGAGTGGAAGA+AGG | - | chr3.4:57340960-57340979 | MS.gene04396:CDS | 50.0% | |
CAGGTTCTTGAGCCATCTCA+AGG | + | chr3.4:57339775-57339794 | None:intergenic | 50.0% | |
CCAGACATTGTTTGCGCTAC+AGG | + | chr3.4:57338878-57338897 | None:intergenic | 50.0% | |
CCGAAACTGCAAATCAACCG+AGG | - | chr3.4:57338783-57338802 | MS.gene04396:CDS | 50.0% | |
CCTGTAGCGCAAACAATGTC+TGG | - | chr3.4:57338875-57338894 | MS.gene04396:CDS | 50.0% | |
GATCCTCATTCCTTTCAGCC+CGG | - | chr3.4:57338809-57338828 | MS.gene04396:CDS | 50.0% | |
GATCTGCTATTGGAGGCTCA+AGG | - | chr3.4:57340342-57340361 | MS.gene04396:intron | 50.0% | |
GGGTGAAAGAGTGGAAGAAG+GGG | - | chr3.4:57340962-57340981 | MS.gene04396:CDS | 50.0% | |
GGTTCTTGAGCCATCTCAAG+GGG | + | chr3.4:57339773-57339792 | None:intergenic | 50.0% | |
GTCTTCGCCTCAGAATTCCT+TGG | + | chr3.4:57339820-57339839 | None:intergenic | 50.0% | |
TCGCATGTTGGGAGAATTCC+AGG | + | chr3.4:57340862-57340881 | None:intergenic | 50.0% | |
TGACCAACAAGTTCCAGCTG+AGG | + | chr3.4:57339277-57339296 | None:intergenic | 50.0% | |
TGGAAGAAGGGGACTGTTCA+GGG | - | chr3.4:57340973-57340992 | MS.gene04396:CDS | 50.0% | |
! | TCGGGAAAGGATAATGGCTC+TGG | - | chr3.4:57340768-57340787 | MS.gene04396:intron | 50.0% |
! | TCTGTGTGAGGCATTCTTCG+CGG | + | chr3.4:57339252-57339271 | None:intergenic | 50.0% |
!! | CAAAGACTGGCCTTCCTCAT+TGG | + | chr3.4:57338945-57338964 | None:intergenic | 50.0% |
!! | CATGCTTTGAGAAGGGCAAG+AGG | - | chr3.4:57340705-57340724 | MS.gene04396:intron | 50.0% |
!! | TATTCTGAACCTTGGTGGCG+TGG | - | chr3.4:57338839-57338858 | MS.gene04396:CDS | 50.0% |
AGCTTATCCTCACCAGCCGT+TGG | - | chr3.4:57339578-57339597 | MS.gene04396:intron | 55.0% | |
CAGGTTTCCGCAGAGTCTGA+AGG | + | chr3.4:57340843-57340862 | None:intergenic | 55.0% | |
CCTGATTGATTGGGAGCAGC+AGG | + | chr3.4:57339019-57339038 | None:intergenic | 55.0% | |
CCTGCTGCTCCCAATCAATC+AGG | - | chr3.4:57339016-57339035 | MS.gene04396:CDS | 55.0% | |
CTTCAGACTCTGCGGAAACC+TGG | - | chr3.4:57340841-57340860 | MS.gene04396:CDS | 55.0% | |
GAGGCCTCGGGAAAGGATAA+TGG | - | chr3.4:57340762-57340781 | MS.gene04396:intron | 55.0% | |
GTGGAAGAAGGGGACTGTTC+AGG | - | chr3.4:57340972-57340991 | MS.gene04396:CDS | 55.0% | |
TATCCAACACCACGCCACCA+AGG | + | chr3.4:57338851-57338870 | None:intergenic | 55.0% | |
TCACATACCAACGGCTGGTG+AGG | + | chr3.4:57339588-57339607 | None:intergenic | 55.0% | |
TGAGCCATCTCAAGGGGCAA+AGG | + | chr3.4:57339767-57339786 | None:intergenic | 55.0% | |
! | AAAACTGATGGCGAGGCCTC+GGG | - | chr3.4:57340750-57340769 | MS.gene04396:intron | 55.0% |
! | GAAAACTGATGGCGAGGCCT+CGG | - | chr3.4:57340749-57340768 | MS.gene04396:intron | 55.0% |
! | TTGAGAAGGGCAAGAGGCAC+CGG | - | chr3.4:57340711-57340730 | MS.gene04396:intron | 55.0% |
!! | CTCAAGGGGCAAAGGCATTC+TGG | + | chr3.4:57339759-57339778 | None:intergenic | 55.0% |
!! | GGCAAAGGCATTCTGGCATG+AGG | + | chr3.4:57339752-57339771 | None:intergenic | 55.0% |
!! | TGGAAGCATCTCCTCGAACG+AGG | - | chr3.4:57341004-57341023 | MS.gene04396:CDS | 55.0% |
CCACCGGGCTGAAAGGAATG+AGG | + | chr3.4:57338815-57338834 | None:intergenic | 60.0% | |
CCAGCTGAGGAGTCTGTGTG+AGG | + | chr3.4:57339264-57339283 | None:intergenic | 60.0% | |
CCTCACACAGACTCCTCAGC+TGG | - | chr3.4:57339261-57339280 | MS.gene04396:intron | 60.0% | |
CCTCATTCCTTTCAGCCCGG+TGG | - | chr3.4:57338812-57338831 | MS.gene04396:CDS | 60.0% | |
GACTGTTCAGGGCAGCTACG+TGG | - | chr3.4:57340984-57341003 | MS.gene04396:CDS | 60.0% | |
!! | GAACCTTGGTGGCGTGGTGT+TGG | - | chr3.4:57338845-57338864 | MS.gene04396:CDS | 60.0% |
CCTCTGCGATGCCTCGTTCG+AGG | + | chr3.4:57341018-57341037 | None:intergenic | 65.0% | |
! | TGATGGCGAGGCCTCGGGAA+AGG | - | chr3.4:57340755-57340774 | MS.gene04396:intron | 65.0% |
!! | AGAAGGGCAAGAGGCACCGG+AGG | - | chr3.4:57340714-57340733 | MS.gene04396:intron | 65.0% |
!! | CCTCGAACGAGGCATCGCAG+AGG | - | chr3.4:57341015-57341034 | MS.gene04396:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 57338770 | 57341055 | 57338770 | ID=MS.gene04396 |
chr3.4 | mRNA | 57338770 | 57341055 | 57338770 | ID=MS.gene04396.t1;Parent=MS.gene04396 |
chr3.4 | exon | 57340788 | 57341055 | 57340788 | ID=MS.gene04396.t1.exon1;Parent=MS.gene04396.t1 |
chr3.4 | CDS | 57340788 | 57341055 | 57340788 | ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1 |
chr3.4 | exon | 57340522 | 57340628 | 57340522 | ID=MS.gene04396.t1.exon2;Parent=MS.gene04396.t1 |
chr3.4 | CDS | 57340522 | 57340628 | 57340522 | ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1 |
chr3.4 | exon | 57340226 | 57340297 | 57340226 | ID=MS.gene04396.t1.exon3;Parent=MS.gene04396.t1 |
chr3.4 | CDS | 57340226 | 57340297 | 57340226 | ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1 |
chr3.4 | exon | 57339936 | 57340100 | 57339936 | ID=MS.gene04396.t1.exon4;Parent=MS.gene04396.t1 |
chr3.4 | CDS | 57339936 | 57340100 | 57339936 | ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1 |
chr3.4 | exon | 57338770 | 57339147 | 57338770 | ID=MS.gene04396.t1.exon5;Parent=MS.gene04396.t1 |
chr3.4 | CDS | 57338770 | 57339147 | 57338770 | ID=cds.MS.gene04396.t1;Parent=MS.gene04396.t1 |
Gene Sequence |
Protein sequence |