AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043970.t1 MTR_1g021360 96.373 193 7 0 1 193 197 389 1.09e-134 385
MS.gene043970.t1 MTR_1g021360 79.279 111 23 0 1 111 40 150 2.01e-57 187
MS.gene043970.t1 MTR_1g021440 61.728 243 42 5 1 193 37 278 2.18e-94 276
MS.gene043970.t1 MTR_1g021440 61.728 243 42 5 1 193 37 278 4.11e-93 276
MS.gene043970.t1 MTR_1g021400 65.066 229 42 6 1 193 45 271 1.14e-91 272
MS.gene043970.t1 MTR_1g021440 57.471 261 42 6 1 193 37 296 4.24e-90 266
MS.gene043970.t1 MTR_1g021410 64.474 228 46 4 1 193 37 264 1.23e-89 267
MS.gene043970.t1 MTR_1g021440 57.471 261 42 6 1 193 37 296 5.43e-89 266
MS.gene043970.t1 MTR_1g021435 61.572 229 51 5 1 193 37 264 6.96e-86 258
MS.gene043970.t1 MTR_1g021330 58.159 239 54 7 1 193 41 279 4.94e-83 251
MS.gene043970.t1 MTR_1g021380 58.636 220 63 5 1 193 36 254 3.27e-77 235
MS.gene043970.t1 MTR_1g021350 58.065 186 42 4 1 150 36 221 2.17e-63 199
MS.gene043970.t1 MTR_1g021290 69.853 136 30 1 1 125 170 305 3.86e-61 194
MS.gene043970.t1 MTR_1g021290 76.238 101 24 0 1 101 42 142 4.86e-52 170
MS.gene043970.t1 MTR_1g021320 80.180 111 22 0 1 111 40 150 2.76e-58 196
MS.gene043970.t1 MTR_1g021320 74.775 111 28 0 1 111 197 307 1.04e-54 186
MS.gene043970.t1 MTR_1g021320 47.748 111 19 4 120 193 413 521 3.81e-17 79.0
MS.gene043970.t1 MTR_1g021500 39.189 222 51 8 1 157 41 243 1.47e-32 121
MS.gene043970.t1 MTR_1g021500 39.189 222 51 8 1 157 41 243 2.60e-32 121
MS.gene043970.t1 MTR_1g021270 32.510 243 110 9 2 193 31 270 6.16e-26 104
MS.gene043970.t1 MTR_7g050640 38.462 78 48 0 2 79 29 106 1.50e-14 67.0
MS.gene043970.t1 MTR_3g098790 40.000 75 45 0 2 76 29 103 4.72e-14 69.3
MS.gene043970.t1 MTR_7g050710 37.838 74 46 0 2 75 29 102 1.99e-13 67.8
MS.gene043970.t1 MTR_7g050720 40.000 75 45 0 2 76 26 100 3.28e-13 67.0
MS.gene043970.t1 MTR_7g050580 38.667 75 46 0 2 76 29 103 4.32e-13 66.6
MS.gene043970.t1 MTR_7g050590 36.709 79 50 0 2 80 2 80 2.05e-12 64.7
MS.gene043970.t1 MTR_5g044670 28.906 128 86 2 2 129 32 154 1.11e-11 62.8
MS.gene043970.t1 MTR_1g034240 38.667 75 46 0 2 76 23 97 1.43e-11 62.8
MS.gene043970.t1 MTR_4g068320 39.189 74 45 0 2 75 22 95 2.73e-11 62.0
MS.gene043970.t1 MTR_3g005495 37.179 78 49 0 2 79 259 336 3.12e-11 61.6
MS.gene043970.t1 MTR_3g061310 25.263 190 114 5 2 182 26 196 6.55e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043970.t1 AT4G33280 45.255 137 74 1 1 136 38 174 1.19e-35 126
MS.gene043970.t1 AT4G33280 45.255 137 74 1 1 136 38 174 1.83e-34 125
MS.gene043970.t1 AT4G33280 46.281 121 64 1 1 120 38 158 5.36e-33 120
MS.gene043970.t1 AT4G34400 37.647 85 53 0 1 85 30 114 1.63e-18 82.4
MS.gene043970.t1 AT4G34400 37.647 85 53 0 1 85 30 114 1.63e-18 82.4
MS.gene043970.t1 AT5G60130 42.045 88 46 2 1 83 28 115 1.22e-14 70.1
MS.gene043970.t1 AT5G60130 42.045 88 46 2 1 83 2 89 1.76e-14 70.5
MS.gene043970.t1 AT5G60130 42.045 88 46 2 1 83 28 115 2.15e-14 70.1
MS.gene043970.t1 AT5G60130 42.045 88 46 2 1 83 25 112 2.77e-14 70.1
MS.gene043970.t1 AT5G60130 42.045 88 46 2 1 83 28 115 2.82e-14 70.1
MS.gene043970.t1 AT3G06220 26.429 140 99 1 2 141 25 160 4.50e-14 67.4
MS.gene043970.t1 AT3G18990 37.333 75 47 0 2 76 22 96 5.88e-13 66.6
MS.gene043970.t1 AT3G18990 37.333 75 47 0 2 76 22 96 6.16e-13 66.6
MS.gene043970.t1 AT3G06160 26.772 127 84 3 1 126 24 142 8.97e-13 65.9
MS.gene043970.t1 AT3G06160 26.772 127 84 3 1 126 24 142 8.97e-13 65.9
MS.gene043970.t1 AT3G06160 26.772 127 84 3 1 126 24 142 8.97e-13 65.9
MS.gene043970.t1 AT3G06160 26.772 127 84 3 1 126 39 157 9.77e-13 65.9
MS.gene043970.t1 AT3G06160 26.772 127 84 3 1 126 83 201 1.01e-12 65.9
MS.gene043970.t1 AT5G66980 31.206 141 88 3 1 137 24 159 5.12e-12 63.9
MS.gene043970.t1 AT5G60140 33.721 86 54 1 1 83 29 114 4.08e-11 61.2
MS.gene043970.t1 AT3G53310 36.000 75 48 0 2 76 26 100 5.05e-11 60.8

Find 40 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTAAGGGTCACACTTTC+TGG 0.078351 1.2:-3279718 None:intergenic
CAACTCCACTAGGACCTTTA+AGG 0.178570 1.2:-3279732 None:intergenic
CCAGAAAGTGTGACCCTTAA+AGG 0.272751 1.2:+3279718 MS.gene043970:CDS
TCACAAGAGTTACCTGCTTT+TGG 0.287075 1.2:-3280120 None:intergenic
AGTGGAGTTGTGTGGAATAT+AGG 0.300231 1.2:+3279745 MS.gene043970:CDS
TGTCGATGGTCCACGTATTC+TGG 0.310730 1.2:+3282240 MS.gene043970:CDS
TGTTTCCCCTGAGCAGTTCA+TGG 0.340150 1.2:+3280005 MS.gene043970:CDS
GTCGTCTTCCTCGCTTAGTC+TGG 0.342526 1.2:-3280098 None:intergenic
GTGGAGTTGTGTGGAATATA+GGG 0.421556 1.2:+3279746 MS.gene043970:CDS
ACAGGCGTAACTTCATTAAC+AGG 0.421710 1.2:-3280075 None:intergenic
TTTAACAAAATAAGGAAAAG+AGG 0.464646 1.2:-3282200 None:intergenic
GCATCAGCCATGAACTGCTC+AGG 0.467203 1.2:-3280012 None:intergenic
CCTCCCAAACAAACGGCAAA+AGG 0.468139 1.2:+3280040 MS.gene043970:CDS
AAAAGAGGAGGTAAATGATT+CGG 0.471467 1.2:-3282185 None:intergenic
AACTCCACTAGGACCTTTAA+GGG 0.479312 1.2:-3279731 None:intergenic
CAACGGTAAATCACTCTTTG+AGG 0.482140 1.2:+3279867 MS.gene043970:CDS
GGCACTTCCTAAAACATTCT+CGG 0.491082 1.2:+3279675 None:intergenic
CTTCCTCGCTTAGTCTGGAC+AGG 0.500517 1.2:-3280093 None:intergenic
CTGTTTACTTCGTGGACGGT+TGG 0.503491 1.2:+3279788 MS.gene043970:CDS
AGATGATACTGTTTACTTCG+TGG 0.529756 1.2:+3279780 MS.gene043970:CDS
GCGGTTCCCTCCCAAACAAA+CGG 0.536582 1.2:+3280033 MS.gene043970:CDS
GGGAATGCTCAAACCGAACA+AGG 0.539691 1.2:+3279952 MS.gene043970:CDS
TGGAGATAGTTTCTGTGAGA+AGG 0.547709 1.2:+3279903 MS.gene043970:CDS
TTCCTTGTCTTTAAGTACAA+CGG 0.560047 1.2:+3279850 MS.gene043970:CDS
ATCAAAACGTTCAATGTCGA+TGG 0.563766 1.2:+3282226 MS.gene043970:CDS
CGAGGAAGACGACCAAAAGC+AGG 0.564365 1.2:+3280108 MS.gene043970:CDS
CATCAGCCATGAACTGCTCA+GGG 0.564547 1.2:-3280011 None:intergenic
TACCGTTGTACTTAAAGACA+AGG 0.571756 1.2:-3279852 None:intergenic
ATATTCCACACAACTCCACT+AGG 0.578077 1.2:-3279742 None:intergenic
GATACTGTTTACTTCGTGGA+CGG 0.601093 1.2:+3279784 MS.gene043970:CDS
AACAAAATAAGGAAAAGAGG+AGG 0.617290 1.2:-3282197 None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG 0.624686 1.2:+3279737 MS.gene043970:CDS
GGAATGCTCAAACCGAACAA+GGG 0.628948 1.2:+3279953 MS.gene043970:CDS
TGAGCAGTTCATGGCTGATG+CGG 0.629723 1.2:+3280014 MS.gene043970:CDS
GTGACCCTTAAAGGTCCTAG+TGG 0.642671 1.2:+3279727 MS.gene043970:CDS
ACGGCAAAAGGATCAAGAAG+AGG 0.646902 1.2:+3280052 MS.gene043970:CDS
GAATGCTCAAACCGAACAAG+GGG 0.647827 1.2:+3279954 MS.gene043970:CDS
ACGCCTGTCCAGACTAAGCG+AGG 0.652299 1.2:+3280090 MS.gene043970:CDS
ATCAGCCATGAACTGCTCAG+GGG 0.743763 1.2:-3280010 None:intergenic
AATGCTCAAACCGAACAAGG+GGG 0.785077 1.2:+3279955 MS.gene043970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATAGTAAAAGTTAA+TGG - chr1.2:3280209-3280228 None:intergenic 10.0%
!! TTAAATAAAATAATAAGCTT+TGG - chr1.2:3282085-3282104 None:intergenic 10.0%
!!! TTGATCATTTTAACAAAATA+AGG - chr1.2:3282211-3282230 None:intergenic 15.0%
!! ATACAAATTTGACAAAAAAG+TGG - chr1.2:3280523-3280542 None:intergenic 20.0%
!! CAAATTTCATTTGTAATTCT+AGG + chr1.2:3280852-3280871 MS.gene043970:intron 20.0%
!! GAAGTTCATATATAATGTAT+CGG + chr1.2:3280598-3280617 MS.gene043970:intron 20.0%
!! TTTAACAAAATAAGGAAAAG+AGG - chr1.2:3282203-3282222 None:intergenic 20.0%
!! TTTCCATTAATAAATGTGAT+AGG + chr1.2:3281173-3281192 MS.gene043970:intron 20.0%
!!! AATTGCCTTTGATTTTATTT+TGG + chr1.2:3281963-3281982 MS.gene043970:intron 20.0%
!!! ATTGCCTTTGATTTTATTTT+GGG + chr1.2:3281964-3281983 MS.gene043970:intron 20.0%
!!! TCACATGTTTTTACTTAAAA+AGG + chr1.2:3280638-3280657 MS.gene043970:intron 20.0%
!!! TCTATTTTACAATTTCTACT+GGG - chr1.2:3281747-3281766 None:intergenic 20.0%
!!! TTCTATTTTACAATTTCTAC+TGG - chr1.2:3281748-3281767 None:intergenic 20.0%
!!! TTCTTTTGTCATTTGATATA+TGG + chr1.2:3280555-3280574 MS.gene043970:intron 20.0%
!!! TTTGAGGTTTTAATATTTGA+TGG + chr1.2:3279883-3279902 MS.gene043970:CDS 20.0%
! AAAAATAAAGCTTGAGATGA+AGG - chr1.2:3281156-3281175 None:intergenic 25.0%
! AAATTTGACAAAAAAGTGGT+TGG - chr1.2:3280519-3280538 None:intergenic 25.0%
! AAGGGAATAAATTCAAAGTA+TGG + chr1.2:3280714-3280733 MS.gene043970:intron 25.0%
! AATTGCAATATTGTTCAAGA+AGG + chr1.2:3281800-3281819 MS.gene043970:intron 25.0%
! AGACACACATTATTATCAAT+TGG - chr1.2:3280432-3280451 None:intergenic 25.0%
! ATCAAATGACAAAAGAAAAG+TGG - chr1.2:3280552-3280571 None:intergenic 25.0%
! CTTAGGAACATTATAAAAAG+GGG - chr1.2:3280347-3280366 None:intergenic 25.0%
! GACACACATTATTATCAATT+GGG - chr1.2:3280431-3280450 None:intergenic 25.0%
! GATAATAATGTGTGTCTATT+TGG + chr1.2:3280435-3280454 MS.gene043970:intron 25.0%
! GCTTAGGAACATTATAAAAA+GGG - chr1.2:3280348-3280367 None:intergenic 25.0%
! TAGACCCAAAATAAAATCAA+AGG - chr1.2:3281971-3281990 None:intergenic 25.0%
!! GTGATTTTATGTAAGAATCA+TGG + chr1.2:3280736-3280755 MS.gene043970:intron 25.0%
!! TAAGCTTTGGCATAAATATA+AGG - chr1.2:3282072-3282091 None:intergenic 25.0%
!!! CTTATTTTGTTGGAAAATGT+GGG + chr1.2:3279932-3279951 MS.gene043970:CDS 25.0%
!!! TCTTATTTTGTTGGAAAATG+TGG + chr1.2:3279931-3279950 MS.gene043970:CDS 25.0%
AAAAGAGGAGGTAAATGATT+CGG - chr1.2:3282188-3282207 None:intergenic 30.0%
AACAAAATAAGGAAAAGAGG+AGG - chr1.2:3282200-3282219 None:intergenic 30.0%
AAGACATATTGATCTCTCAA+AGG - chr1.2:3281082-3281101 None:intergenic 30.0%
AATGACAAAAGAAAAGTGGT+TGG - chr1.2:3280548-3280567 None:intergenic 30.0%
ACAGACAACTGAAGATAAAA+AGG + chr1.2:3281769-3281788 MS.gene043970:intron 30.0%
ATTGCCATGATTAGAAGATT+AGG - chr1.2:3281410-3281429 None:intergenic 30.0%
CAAGCATTTCTTGAAAATTG+AGG - chr1.2:3281120-3281139 None:intergenic 30.0%
CGCTTAGGAACATTATAAAA+AGG - chr1.2:3280349-3280368 None:intergenic 30.0%
GGTCCTATCACATTTATTAA+TGG - chr1.2:3281179-3281198 None:intergenic 30.0%
TAATCTTCTAATCATGGCAA+TGG + chr1.2:3281409-3281428 MS.gene043970:intron 30.0%
TCACAAGAAAAGTTATGACA+AGG - chr1.2:3280985-3281004 None:intergenic 30.0%
TGCAAGGTTTGCAATAAATT+TGG + chr1.2:3280953-3280972 MS.gene043970:intron 30.0%
TGTTCCTAATCTTCTAATCA+TGG + chr1.2:3281403-3281422 MS.gene043970:intron 30.0%
TTAACTTTAGCAGATGACTT+GGG + chr1.2:3280680-3280699 MS.gene043970:intron 30.0%
TTAGAAGATAAGCAAAGTCA+AGG - chr1.2:3281937-3281956 None:intergenic 30.0%
TTCCTTGTCTTTAAGTACAA+CGG + chr1.2:3279850-3279869 MS.gene043970:CDS 30.0%
! AAATTGTCCGAGAATGTTTT+AGG - chr1.2:3279685-3279704 None:intergenic 30.0%
! TTCTTGTGATTTTGCTCAAT+GGG + chr1.2:3280996-3281015 MS.gene043970:intron 30.0%
! TTTCTTGTGATTTTGCTCAA+TGG + chr1.2:3280995-3281014 MS.gene043970:intron 30.0%
! TTTTATAATGTTCCTAAGCG+TGG + chr1.2:3280349-3280368 MS.gene043970:intron 30.0%
!! GGAAGAATCATTGTTTTGTT+TGG + chr1.2:3280757-3280776 MS.gene043970:intron 30.0%
!! TTTCTTGCTTCTGTTATTTC+TGG + chr1.2:3280886-3280905 MS.gene043970:intron 30.0%
!!! GTTTTTGAGTCTCTATCAAT+TGG - chr1.2:3281613-3281632 None:intergenic 30.0%
AAATGTGATAGGACCCATTA+AGG + chr1.2:3281184-3281203 MS.gene043970:intron 35.0%
AACAAATTAGTCCAACCTTC+CGG + chr1.2:3280914-3280933 MS.gene043970:intron 35.0%
AATGTGATAGGACCCATTAA+GGG + chr1.2:3281185-3281204 MS.gene043970:intron 35.0%
AGAGAAATACACATGGAAGA+GGG + chr1.2:3281262-3281281 MS.gene043970:intron 35.0%
AGATGATACTGTTTACTTCG+TGG + chr1.2:3279780-3279799 MS.gene043970:CDS 35.0%
AGCATTGCTTTGTGTAGTTA+GGG + chr1.2:3280809-3280828 MS.gene043970:intron 35.0%
AGGATCTTTAACGTGAAATC+CGG + chr1.2:3281518-3281537 MS.gene043970:intron 35.0%
ATCAAAACGTTCAATGTCGA+TGG + chr1.2:3282226-3282245 MS.gene043970:CDS 35.0%
ATTAGTGGAAAGGAATTGCA+AGG + chr1.2:3280937-3280956 MS.gene043970:intron 35.0%
ATTTGGACCTTTCCCTTAAT+GGG - chr1.2:3281200-3281219 None:intergenic 35.0%
CAAGTCATCTGCTAAAGTTA+AGG - chr1.2:3280681-3280700 None:intergenic 35.0%
CTTAACTTTAGCAGATGACT+TGG + chr1.2:3280679-3280698 MS.gene043970:intron 35.0%
CTTGTAATAAGGAACACTCT+GGG + chr1.2:3280163-3280182 MS.gene043970:intron 35.0%
GATTAGAAGATTAGGAACAC+AGG - chr1.2:3281402-3281421 None:intergenic 35.0%
GCATTTCTTGAAAATTGAGG+TGG - chr1.2:3281117-3281136 None:intergenic 35.0%
TACCGTTGTACTTAAAGACA+AGG - chr1.2:3279855-3279874 None:intergenic 35.0%
TAGCAAACTGATACTTGTCT+AGG + chr1.2:3282024-3282043 MS.gene043970:intron 35.0%
TCAATTCGATACACATGCTT+CGG + chr1.2:3280261-3280280 MS.gene043970:intron 35.0%
TGTCAACTTAGTTAGAGAGA+GGG + chr1.2:3281239-3281258 MS.gene043970:intron 35.0%
TTGTCAACTTAGTTAGAGAG+AGG + chr1.2:3281238-3281257 MS.gene043970:intron 35.0%
TTTCACGTTAAAGATCCTGT+TGG - chr1.2:3281516-3281535 None:intergenic 35.0%
TTTGGACATGTATCTCATCT+TGG + chr1.2:3280453-3280472 MS.gene043970:intron 35.0%
! AGAAATGCTTGAGTTTTCTG+AGG + chr1.2:3281129-3281148 MS.gene043970:intron 35.0%
! AGCTTTGCTCTATGGATTAT+AGG - chr1.2:3281694-3281713 None:intergenic 35.0%
! CAATATGTCTTGCTTTGAGT+AGG + chr1.2:3281091-3281110 MS.gene043970:intron 35.0%
! CTTTTCTTCAAGCATTCACA+AGG - chr1.2:3281904-3281923 None:intergenic 35.0%
! TAGACAAGTATCAGTTTGCT+AGG - chr1.2:3282025-3282044 None:intergenic 35.0%
! TTTGCTCTATGGATTATAGG+AGG - chr1.2:3281691-3281710 None:intergenic 35.0%
!! AGACAAGTATCAGTTTGCTA+GGG - chr1.2:3282024-3282043 None:intergenic 35.0%
!! TGATTTGGTGGCTTGTAATA+AGG + chr1.2:3280152-3280171 MS.gene043970:intron 35.0%
!!! AAGGCAGCTTCTTATTTTGT+TGG + chr1.2:3279922-3279941 MS.gene043970:CDS 35.0%
AACTCCACTAGGACCTTTAA+GGG - chr1.2:3279734-3279753 None:intergenic 40.0%
AACTGTTCAATTCCACACAG+AGG + chr1.2:3282117-3282136 MS.gene043970:intron 40.0%
ACAGGCGTAACTTCATTAAC+AGG - chr1.2:3280078-3280097 None:intergenic 40.0%
ACGTTAAAGATCCTGTTGGA+TGG - chr1.2:3281512-3281531 None:intergenic 40.0%
AGAAGATTAGGAACACAGGT+GGG - chr1.2:3281398-3281417 None:intergenic 40.0%
AGTGGAGTTGTGTGGAATAT+AGG + chr1.2:3279745-3279764 MS.gene043970:CDS 40.0%
ATACGTGTTTGACCTTTAGC+AGG - chr1.2:3281057-3281076 None:intergenic 40.0%
ATAGAGCAAAGCTCTTTCAG+AGG + chr1.2:3281701-3281720 MS.gene043970:intron 40.0%
ATATTCCACACAACTCCACT+AGG - chr1.2:3279745-3279764 None:intergenic 40.0%
CAACGGTAAATCACTCTTTG+AGG + chr1.2:3279867-3279886 MS.gene043970:CDS 40.0%
CATTAAGGGAAAGGTCCAAA+TGG + chr1.2:3281199-3281218 MS.gene043970:intron 40.0%
CATTTGGACCTTTCCCTTAA+TGG - chr1.2:3281201-3281220 None:intergenic 40.0%
CGTTAAAGATCCTGTTGGAT+GGG - chr1.2:3281511-3281530 None:intergenic 40.0%
GAAGAGGGGAATATATAGAG+AGG + chr1.2:3281277-3281296 MS.gene043970:intron 40.0%
GAGAAATACACATGGAAGAG+GGG + chr1.2:3281263-3281282 MS.gene043970:intron 40.0%
GAGAGAAATACACATGGAAG+AGG + chr1.2:3281261-3281280 MS.gene043970:intron 40.0%
GATACTCATAAACCACGCTT+AGG - chr1.2:3280364-3280383 None:intergenic 40.0%
GATACTGTTTACTTCGTGGA+CGG + chr1.2:3279784-3279803 MS.gene043970:CDS 40.0%
GCAATTCCTTTCCACTAATC+CGG - chr1.2:3280936-3280955 None:intergenic 40.0%
GCTTGTAATAAGGAACACTC+TGG + chr1.2:3280162-3280181 MS.gene043970:intron 40.0%
GTGGAGTTGTGTGGAATATA+GGG + chr1.2:3279746-3279765 MS.gene043970:CDS 40.0%
TACAATTTCTACTGGGCAGA+GGG - chr1.2:3281740-3281759 None:intergenic 40.0%
TAGAAGATTAGGAACACAGG+TGG - chr1.2:3281399-3281418 None:intergenic 40.0%
TCTGAAAGAGCTTTGCTCTA+TGG - chr1.2:3281702-3281721 None:intergenic 40.0%
TGGAGATAGTTTCTGTGAGA+AGG + chr1.2:3279903-3279922 MS.gene043970:CDS 40.0%
TTACAATTTCTACTGGGCAG+AGG - chr1.2:3281741-3281760 None:intergenic 40.0%
TTCTTCAAGCATTCACAAGG+AGG - chr1.2:3281901-3281920 None:intergenic 40.0%
TTGTGAGAGAGCTCATGATT+TGG + chr1.2:3280137-3280156 MS.gene043970:intron 40.0%
TTTGACCTTTAGCAGGAAAC+AGG - chr1.2:3281050-3281069 None:intergenic 40.0%
! ACTGGTTTCCCTCTTATATC+CGG + chr1.2:3281578-3281597 MS.gene043970:intron 40.0%
! GAGCATTGCTTTGTGTAGTT+AGG + chr1.2:3280808-3280827 MS.gene043970:intron 40.0%
! TCACAAGAGTTACCTGCTTT+TGG - chr1.2:3280123-3280142 None:intergenic 40.0%
!! ATGGGTTGAAAGAGCATCAA+GGG - chr1.2:3281493-3281512 None:intergenic 40.0%
!! GATCCTTTTGCCGTTTGTTT+GGG - chr1.2:3280046-3280065 None:intergenic 40.0%
!! TGATCCTTTTGCCGTTTGTT+TGG - chr1.2:3280047-3280066 None:intergenic 40.0%
!!! GGTGAAGCTGGTCTTATTTT+TGG - chr1.2:3281472-3281491 None:intergenic 40.0%
AATGCTCAAACCGAACAAGG+GGG + chr1.2:3279955-3279974 MS.gene043970:CDS 45.0%
ACGGCAAAAGGATCAAGAAG+AGG + chr1.2:3280052-3280071 MS.gene043970:CDS 45.0%
ACTTGGGCTTGAGTCACAAA+GGG + chr1.2:3280696-3280715 MS.gene043970:intron 45.0%
AGTGACGATGGACAACATGT+GGG - chr1.2:3281561-3281580 None:intergenic 45.0%
CAACTCCACTAGGACCTTTA+AGG - chr1.2:3279735-3279754 None:intergenic 45.0%
CTCAGTTGAACAGCTAATGC+TGG - chr1.2:3281373-3281392 None:intergenic 45.0%
GAATGCTCAAACCGAACAAG+GGG + chr1.2:3279954-3279973 MS.gene043970:CDS 45.0%
GAGAGGGAGAGAAATACACA+TGG + chr1.2:3281255-3281274 MS.gene043970:intron 45.0%
GATAGGACCCATTAAGGGAA+AGG + chr1.2:3281190-3281209 MS.gene043970:intron 45.0%
GCTTACCTGTTTCCTGCTAA+AGG + chr1.2:3281042-3281061 MS.gene043970:intron 45.0%
GGAATGCTCAAACCGAACAA+GGG + chr1.2:3279953-3279972 MS.gene043970:CDS 45.0%
TATAGAGAGGCAGTGTCATG+AGG + chr1.2:3281290-3281309 MS.gene043970:intron 45.0%
TTCCTTTCCACTAATCCGGA+AGG - chr1.2:3280932-3280951 None:intergenic 45.0%
TTTCCACTAATCCGGAAGGT+TGG - chr1.2:3280928-3280947 None:intergenic 45.0%
! CCAGAAAGTGTGACCCTTAA+AGG + chr1.2:3279718-3279737 MS.gene043970:CDS 45.0%
! CCTTTAAGGGTCACACTTTC+TGG - chr1.2:3279721-3279740 None:intergenic 45.0%
! TATCAATTGGTCTGACCTGC+CGG - chr1.2:3281600-3281619 None:intergenic 45.0%
! TGAGAGAGCTCATGATTTGG+TGG + chr1.2:3280140-3280159 MS.gene043970:intron 45.0%
! TGGTTGGCTACTCTAAGTTC+AGG - chr1.2:3280503-3280522 None:intergenic 45.0%
!! AACCTTCCGGATTAGTGGAA+AGG + chr1.2:3280927-3280946 MS.gene043970:intron 45.0%
!! CTTTTGCCGTTTGTTTGGGA+GGG - chr1.2:3280042-3280061 None:intergenic 45.0%
!! GATGGGTTGAAAGAGCATCA+AGG - chr1.2:3281494-3281513 None:intergenic 45.0%
AACCGAACAAGGGGGTAGAA+AGG + chr1.2:3279963-3279982 MS.gene043970:CDS 50.0%
AAGAGGGAAACCAGTGACGA+TGG - chr1.2:3281573-3281592 None:intergenic 50.0%
AAGGTCCTAGTGGAGTTGTG+TGG + chr1.2:3279737-3279756 MS.gene043970:CDS 50.0%
AGGGAAAGGTCCAAATGGAG+AGG + chr1.2:3281204-3281223 MS.gene043970:intron 50.0%
ATCAGCCATGAACTGCTCAG+GGG - chr1.2:3280013-3280032 None:intergenic 50.0%
CAAGCACTCTCCTCTCCATT+TGG - chr1.2:3281217-3281236 None:intergenic 50.0%
CACATGTTGTCCATCGTCAC+TGG + chr1.2:3281560-3281579 MS.gene043970:intron 50.0%
CAGTGACGATGGACAACATG+TGG - chr1.2:3281562-3281581 None:intergenic 50.0%
CATCAGCCATGAACTGCTCA+GGG - chr1.2:3280014-3280033 None:intergenic 50.0%
CCTCCCAAACAAACGGCAAA+AGG + chr1.2:3280040-3280059 MS.gene043970:CDS 50.0%
CTGACCTGCCGGATATAAGA+GGG - chr1.2:3281589-3281608 None:intergenic 50.0%
CTGTTTACTTCGTGGACGGT+TGG + chr1.2:3279788-3279807 MS.gene043970:CDS 50.0%
GACTTGGGCTTGAGTCACAA+AGG + chr1.2:3280695-3280714 MS.gene043970:intron 50.0%
GCTCTTTCAACCCATCCAAC+AGG + chr1.2:3281498-3281517 MS.gene043970:intron 50.0%
GGGAATGCTCAAACCGAACA+AGG + chr1.2:3279952-3279971 MS.gene043970:CDS 50.0%
GTGACCCTTAAAGGTCCTAG+TGG + chr1.2:3279727-3279746 MS.gene043970:CDS 50.0%
GTTTCCCTCTTATATCCGGC+AGG + chr1.2:3281582-3281601 MS.gene043970:intron 50.0%
TCTGACCTGCCGGATATAAG+AGG - chr1.2:3281590-3281609 None:intergenic 50.0%
TGAGCAGTTCATGGCTGATG+CGG + chr1.2:3280014-3280033 MS.gene043970:CDS 50.0%
TGCCTTTCTACCCCCTTGTT+CGG - chr1.2:3279968-3279987 None:intergenic 50.0%
TGTCGATGGTCCACGTATTC+TGG + chr1.2:3282240-3282259 MS.gene043970:CDS 50.0%
TGTTTCCCCTGAGCAGTTCA+TGG + chr1.2:3280005-3280024 MS.gene043970:CDS 50.0%
! AGTCCAACCTTCCGGATTAG+TGG + chr1.2:3280922-3280941 MS.gene043970:intron 50.0%
! TTCTACTGGGCAGAGGGTAT+TGG - chr1.2:3281734-3281753 None:intergenic 50.0%
!! AAGAGCATCAAGGGTGAAGC+TGG - chr1.2:3281484-3281503 None:intergenic 50.0%
!! CAAATGGAGAGGAGAGTGCT+TGG + chr1.2:3281215-3281234 MS.gene043970:intron 50.0%
!! CCTTTTGCCGTTTGTTTGGG+AGG - chr1.2:3280043-3280062 None:intergenic 50.0%
AGAGAGGCAGTGTCATGAGG+AGG + chr1.2:3281293-3281312 MS.gene043970:intron 55.0%
CGAGGAAGACGACCAAAAGC+AGG + chr1.2:3280108-3280127 MS.gene043970:CDS 55.0%
CTTCCTCGCTTAGTCTGGAC+AGG - chr1.2:3280096-3280115 None:intergenic 55.0%
GCATCAGCCATGAACTGCTC+AGG - chr1.2:3280015-3280034 None:intergenic 55.0%
GCGGTTCCCTCCCAAACAAA+CGG + chr1.2:3280033-3280052 MS.gene043970:CDS 55.0%
GGCTACGATGGTAGAGTCAC+CGG - chr1.2:3281540-3281559 None:intergenic 55.0%
GTCGTCTTCCTCGCTTAGTC+TGG - chr1.2:3280101-3280120 None:intergenic 55.0%
TTGACAGTGCTGCCTCTGTG+TGG - chr1.2:3282132-3282151 None:intergenic 55.0%
! GGACAACATGTGGGCTACGA+TGG - chr1.2:3281552-3281571 None:intergenic 55.0%
ACGCCTGTCCAGACTAAGCG+AGG + chr1.2:3280090-3280109 MS.gene043970:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3279676 3282261 3279676 ID=MS.gene043970
chr1.2 mRNA 3279676 3282261 3279676 ID=MS.gene043970.t1;Parent=MS.gene043970
chr1.2 exon 3279676 3280129 3279676 ID=MS.gene043970.t1.exon1;Parent=MS.gene043970.t1
chr1.2 CDS 3279676 3280129 3279676 ID=cds.MS.gene043970.t1;Parent=MS.gene043970.t1
chr1.2 exon 3282137 3282261 3282137 ID=MS.gene043970.t1.exon2;Parent=MS.gene043970.t1
chr1.2 CDS 3282137 3282261 3282137 ID=cds.MS.gene043970.t1;Parent=MS.gene043970.t1
Gene Sequence

>MS.gene043970

GCACTTCCTAAAACATTCTCGGACAATTTAAAGAAGAAGTTGCCAGAAAGTGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAGAGATGATACTGTTTACTTCGTGGACGGTTGGAAACGATTCATTAAAGATCACTCTTTGAAACAGAATGATTTCCTTGTCTTTAAGTACAACGGTAAATCACTCTTTGAGGTTTTAATATTTGATGGAGATAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGGAATGCTCAAACCGAACAAGGGGGTAGAAAGGCAAAAGACACAAATAAGACTGTTTCCCCTGAGCAGTTCATGGCTGATGCGGTTCCCTCCCAAACAAACGGCAAAAGGATCAAGAAGAGGCCTGTTAATGAAGTTACGCCTGTCCAGACTAAGCGAGGAAGACGACCAAAAGCAGGTAACTCTTGTGAGAGAGCTCATGATTTGGTGGCTTGTAATAAGGAACACTCTGGGTTAAAATGTTTCTTTCTTATCCATTAACTTTTACTATTTAATACTTAACTATTTAGTAAATAAAACTTTCTGATGTCAATTCGATACACATGCTTCGGTATGATGTTTGCAAAAGCTTAAGAAGATAACTTCATGTTCATTGTGCAAACTAGTTTTTTCCCCTTTTTATAATGTTCCTAAGCGTGGTTTATGAGTATCTTACGATAGACACGAGTTGTATATCAATTTGATACTAAACTGAACCCAATTGATAATAATGTGTGTCTATTTGGACATGTATCTCATCTTGGACATGCAACTCTAATGAATCAGTACCTGAACTTAGAGTAGCCAACCACTTTTTTGTCAAATTTGTATAACCAACCACTTTTCTTTTGTCATTTGATATATGGCTTCAATAAAGAATCATTTTGAAGTTCATATATAATGTATCGGCATATATTTCTGTTATGTCACATGTTTTTACTTAAAAAGGACATACTTTCTGTAGTGCCTTAACTTTAGCAGATGACTTGGGCTTGAGTCACAAAGGGAATAAATTCAAAGTATGGTGATTTTATGTAAGAATCATGGAAGAATCATTGTTTTGTTTGGTCAGATAATTGTGTGTTTTCTCTGTGTAGAGCATTGCTTTGTGTAGTTAGGGATTTATCATCAATAAACACTCAAATTTCATTTGTAATTCTAGGATTCTCTTTAATTTCTTGCTTCTGTTATTTCTGGTTTGCAACAAATTAGTCCAACCTTCCGGATTAGTGGAAAGGAATTGCAAGGTTTGCAATAAATTTGGCACTTTCCTTGTCATAACTTTTCTTGTGATTTTGCTCAATGGGAGCACTCGCAAGTTTGCATTCAAGCTTACCTGTTTCCTGCTAAAGGTCAAACACGTATTTCCTTTGAGAGATCAATATGTCTTGCTTTGAGTAGGCCACCTCAATTTTCAAGAAATGCTTGAGTTTTCTGAGGTCCTTCATCTCAAGCTTTATTTTTCCATTAATAAATGTGATAGGACCCATTAAGGGAAAGGTCCAAATGGAGAGGAGAGTGCTTGGTTGTCAACTTAGTTAGAGAGAGGGAGAGAAATACACATGGAAGAGGGGAATATATAGAGAGGCAGTGTCATGAGGAGGTCATGATAATTGTTTCTATTCTGTTTTACAGTTTTAGTTCTGATTCTTGATTTTCCAGCATTAGCTGTTCAACTGAGTTCCCACCTGTGTTCCTAATCTTCTAATCATGGCAATGGAAAATGATTCTCAGTCAACATTTGAGTTCTCTGCACACCAAAAATAAGACCAGCTTCACCCTTGATGCTCTTTCAACCCATCCAACAGGATCTTTAACGTGAAATCCGGTGACTCTACCATCGTAGCCCACATGTTGTCCATCGTCACTGGTTTCCCTCTTATATCCGGCAGGTCAGACCAATTGATAGAGACTCAAAAACGTAATAGTATAGAATGAGTGTGTTATTTGCTAACATAAAATGATTACATGAGTTTCCTCCTATAATCCATAGAGCAAAGCTCTTTCAGAGGATGAATACCAATACCCTCTGCCCAGTAGAAATTGTAAAATAGAATACAGACAACTGAAGATAAAAAGGAAAGTTAAAATTGCAATATTGTTCAAGAAGGAAATATTAAACTGTCTCTGAAGTTATCTTCTGTAATCATAATATCATCAACATACACAAAAGTACAATTAGTTTTCCTCCTTGTGAATGCTTGAAGAAAAGATTGTGATTTCCTTGACTTTGCTTATCTTCTAAACACGCAATTGCCTTTGATTTTATTTTGGGTCTAAAAAATATGTATTAAAACTCATCTGATCTTCCCTAGCAAACTGATACTTGTCTAGGAAAGAGTATTTTGCATTCAAATCCTTATATTTATGCCAAAGCTTATTATTTTATTTAAAACTCATGATTGAACTGTTCAATTCCACACAGAGGCAGCACTGTCAAAGTTATCATCATCGCATGCTGAGAAAAAGATAGCCGAATCATTTACCTCCTCTTTTCCTTATTTTGTTAAAATGATCAAAACGTTCAATGTCGATGGTCCACGTATTCTG
Protein sequence

>MS.gene043970.t1

ALPKTFSDNLKKKLPESVTLKGPSGVVWNIGLTTRDDTVYFVDGWKRFIKDHSLKQNDFLVFKYNGKSLFEVLIFDGDSFCEKAASYFVGKCGNAQTEQGGRKAKDTNKTVSPEQFMADAVPSQTNGKRIKKRPVNEVTPVQTKRGRRPKAEAALSKLSSSHAEKKIAESFTSSFPYFVKMIKTFNVDGPRIL