AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044016

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044016.t1 MTR_7g116460 70.192 208 47 2 1 201 1 200 2.16e-97 285
MS.gene044016.t1 MTR_1g019820 68.037 219 33 3 98 285 5 217 1.80e-93 275
MS.gene044016.t1 MTR_1g045470 49.074 324 106 5 1 278 1 311 1.12e-90 272
MS.gene044016.t1 MTR_1g053575 44.675 338 98 9 1 278 1 309 5.02e-76 234
MS.gene044016.t1 MTR_7g100990 33.758 157 89 5 11 159 17 166 1.03e-17 82.0
MS.gene044016.t1 MTR_7g005280 31.481 162 99 4 11 170 21 172 1.67e-15 74.7
MS.gene044016.t1 MTR_8g099750 32.278 158 81 5 11 155 20 164 4.52e-13 67.4
MS.gene044016.t1 MTR_2g093810 28.151 238 129 9 11 214 20 249 1.25e-12 67.4
MS.gene044016.t1 MTR_3g109340 26.562 192 127 6 11 195 28 212 9.95e-12 65.1
MS.gene044016.t1 MTR_7g085220 30.233 172 98 7 11 167 14 178 1.14e-11 64.7
MS.gene044016.t1 MTR_4g089135 33.333 129 77 4 11 137 21 142 1.36e-11 64.3
MS.gene044016.t1 MTR_3g096140 31.875 160 96 8 11 165 13 164 2.96e-11 63.2
MS.gene044016.t1 MTR_3g096140 31.875 160 96 8 11 165 13 164 3.43e-11 63.5
MS.gene044016.t1 MTR_3g109340 26.943 193 126 7 11 195 28 213 4.30e-11 63.2
MS.gene044016.t1 MTR_5g040420 31.973 147 82 6 11 151 20 154 4.92e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044016.t1 AT5G13180 33.333 147 85 5 11 154 20 156 5.12e-13 67.8
MS.gene044016.t1 AT5G62380 32.237 152 94 6 11 159 13 158 1.34e-12 67.4
MS.gene044016.t1 AT5G62380 32.237 152 94 6 11 159 13 158 1.34e-12 67.4
MS.gene044016.t1 AT2G24430 30.000 150 95 4 11 157 22 164 2.37e-12 66.6
MS.gene044016.t1 AT2G24430 30.000 150 95 4 11 157 22 164 2.37e-12 66.6
MS.gene044016.t1 AT3G10480 34.416 154 87 8 11 158 33 178 2.74e-12 67.0
MS.gene044016.t1 AT3G15510 27.660 188 107 7 11 182 23 197 9.66e-12 65.1
MS.gene044016.t1 AT2G33480 32.192 146 85 5 11 154 21 154 1.09e-11 64.3
MS.gene044016.t1 AT2G46770 31.429 175 81 9 11 159 22 183 4.37e-11 63.2
MS.gene044016.t1 AT5G63790 34.194 155 79 8 11 154 56 198 5.75e-11 62.4
MS.gene044016.t1 AT5G63790 34.194 155 79 8 11 154 66 208 6.18e-11 62.4

Find 48 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTTGATTTCTTGAATT+TGG 0.087662 1.2:+3842094 None:intergenic
AGTGGCAGATTTCTTCTTTA+AGG 0.196237 1.2:+3845196 None:intergenic
TAAAGAATCCTTGGGAGATT+TGG 0.224375 1.2:-3845274 MS.gene044016:CDS
AATCTCCCAAGGATTCTTTA+TGG 0.228130 1.2:+3845277 None:intergenic
TAGCAATGTTTGCCAGGATT+TGG 0.273310 1.2:+3841881 None:intergenic
AAACGTTTGATTCGTACTAT+TGG 0.295360 1.2:-3845170 MS.gene044016:CDS
AAAGAATCCTTGGGAGATTT+GGG 0.315347 1.2:-3845273 MS.gene044016:CDS
TGGAAATATCAAGATTGATT+TGG 0.320688 1.2:-3842068 MS.gene044016:CDS
TTGATTCGTACTATTGGAAT+TGG 0.345874 1.2:-3845164 MS.gene044016:CDS
TTCAAGAACATTGATATAGT+TGG 0.354618 1.2:+3845316 None:intergenic
TCATCAAGTGAGAATTTGAT+TGG 0.398760 1.2:+3844649 None:intergenic
TTGATACCATAAAGAATCCT+TGG 0.401306 1.2:-3845283 MS.gene044016:CDS
ATCTTTGATTAACAATGCTT+CGG 0.415664 1.2:-3844997 MS.gene044016:intron
TCAAGAACATTGATATAGTT+GGG 0.434618 1.2:+3845317 None:intergenic
AGTATGGTAACTTACAGATA+TGG 0.443956 1.2:+3844569 None:intergenic
TCAAGAAATCAACTTGATAG+TGG 0.460070 1.2:-3842088 MS.gene044016:CDS
GCAAGTTCTCACTCATATCA+TGG 0.460346 1.2:-3845242 MS.gene044016:CDS
TAAACATAGCAATGTTTGCC+AGG 0.462499 1.2:+3841875 None:intergenic
CAAGGAAAGACAGTTGTTCC+CGG 0.469375 1.2:-3844606 MS.gene044016:CDS
TCTGCATAGAACATAATTGC+TGG 0.484592 1.2:+3844725 None:intergenic
ATTGAAATGATTCCAAATCC+TGG 0.485538 1.2:-3841893 MS.gene044016:CDS
ATGAAGATGGTGATATCTCT+TGG 0.494027 1.2:-3841979 MS.gene044016:CDS
TGATACCATAAAGAATCCTT+GGG 0.502233 1.2:-3845282 MS.gene044016:CDS
ATTATAAACAAAGATGAAGA+TGG 0.538976 1.2:-3841992 MS.gene044016:CDS
TCTCACTTGATGAATAGCAT+TGG 0.540753 1.2:-3844639 MS.gene044016:CDS
AGGAAGGTTAATCGAAGAGG+AGG 0.555973 1.2:-3841918 MS.gene044016:CDS
AAAGAGACCGGCCAAACCCT+AGG 0.557513 1.2:-3845101 MS.gene044016:CDS
TATCGTGAACTTTATTGTAG+AGG 0.559597 1.2:+3845348 None:intergenic
CGAAGAAGTTCACCATCTGT+AGG 0.564532 1.2:+3845377 None:intergenic
ACACTTCTCAAGATGGTGGA+TGG 0.567014 1.2:-3845046 MS.gene044016:CDS
AGTATAGTTGACAAAGAGAC+CGG 0.568733 1.2:-3845113 MS.gene044016:CDS
AAGAGTTACACTTCTCAAGA+TGG 0.569646 1.2:-3845053 MS.gene044016:CDS
GAACTCATAGAGGCGAATGA+AGG 0.573007 1.2:-3841938 MS.gene044016:CDS
AACTCTTCCCAAATCTCCCA+AGG 0.573940 1.2:+3845266 None:intergenic
TTCTCACTCATATCATGGAA+AGG 0.587566 1.2:-3845237 MS.gene044016:CDS
ACATTGATATAGTTGGGCAC+TGG 0.596165 1.2:+3845323 None:intergenic
GACAGTTGTTCCCGGACCTG+CGG 0.611545 1.2:-3844598 MS.gene044016:CDS
TGTTAATCAAAGATATGTGA+AGG 0.617441 1.2:+3845006 None:intergenic
TCATAGAGGCGAATGAAGGA+AGG 0.619859 1.2:-3841934 MS.gene044016:CDS
GTACTATTGGAATTGGTACG+TGG 0.623666 1.2:-3845157 MS.gene044016:CDS
AGTTACACTTCTCAAGATGG+TGG 0.626247 1.2:-3845050 MS.gene044016:CDS
AGCATTGGACAAGATAAGCA+AGG 0.636949 1.2:-3844624 MS.gene044016:CDS
AAGTGTAACTCTTCTCAAAG+CGG 0.648652 1.2:+3845063 None:intergenic
TACTATTGGAATTGGTACGT+GGG 0.648722 1.2:-3845156 MS.gene044016:CDS
TGAAGGAAGGTTAATCGAAG+AGG 0.648808 1.2:-3841921 MS.gene044016:CDS
ACGAATCAAACGTTTACTAG+TGG 0.651740 1.2:+3845178 None:intergenic
ACGTGGGAAGCTGAAGACAC+CGG 0.664319 1.2:-3845140 MS.gene044016:CDS
TAAAAGTGCCAATACGACAG+AGG 0.688062 1.2:-3842044 MS.gene044016:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAATTAATACTATTAATT+TGG + chr1.2:3844053-3844072 None:intergenic 10.0%
!! ATGTAAAAAAAAAAAAGATT+TGG + chr1.2:3844475-3844494 None:intergenic 10.0%
!!! AAAAAAAATAGAAATTTGTT+CGG + chr1.2:3843886-3843905 None:intergenic 10.0%
!!! AAATTGTTTAAAAGTATAAT+TGG - chr1.2:3843408-3843427 MS.gene044016:intron 10.0%
!!! AACAATATTTTTTATGAAAT+TGG - chr1.2:3842944-3842963 MS.gene044016:intron 10.0%
!!! AATTGTTTAAAAGTATAATT+GGG - chr1.2:3843409-3843428 MS.gene044016:intron 10.0%
!!! ATATTTTTTTGTTATATTGT+TGG + chr1.2:3843335-3843354 None:intergenic 10.0%
!!! GATATAGATATATATATTTT+TGG - chr1.2:3843687-3843706 MS.gene044016:intron 10.0%
!! AATTATCATTACATATAGAA+AGG + chr1.2:3844556-3844575 None:intergenic 15.0%
!! ATACTAAGTTTATACTAATT+AGG - chr1.2:3842443-3842462 MS.gene044016:intron 15.0%
!! ATATAATCAAATTCAAATCT+GGG + chr1.2:3844278-3844297 None:intergenic 15.0%
!! GTTAAAATAGATCAAATAAA+TGG + chr1.2:3844995-3845014 None:intergenic 15.0%
!! TACTAAGTTTATACTAATTA+GGG - chr1.2:3842444-3842463 MS.gene044016:intron 15.0%
!! TAGATTATTATTATTGTTGT+TGG - chr1.2:3843803-3843822 MS.gene044016:intron 15.0%
!!! ATTCTTTTTTCTGTATTTTT+TGG + chr1.2:3842612-3842631 None:intergenic 15.0%
!!! TAACAAAAAACAAATTTTGT+TGG - chr1.2:3844010-3844029 MS.gene044016:intron 15.0%
!! AAAAAATAATTCATGAGGTA+AGG + chr1.2:3842398-3842417 None:intergenic 20.0%
!! AAAAATAATTCATGAGGTAA+GGG + chr1.2:3842397-3842416 None:intergenic 20.0%
!! AAAATTGCTAGCAATAATAA+TGG + chr1.2:3843973-3843992 None:intergenic 20.0%
!! AACCAAAAAAATAATTCATG+AGG + chr1.2:3842403-3842422 None:intergenic 20.0%
!! AATCAAGCTAACATAAAAAA+AGG + chr1.2:3842896-3842915 None:intergenic 20.0%
!! ACAAATAATACATACAATGT+TGG + chr1.2:3844749-3844768 None:intergenic 20.0%
!! ATCAAGCTAACATAAAAAAA+GGG + chr1.2:3842895-3842914 None:intergenic 20.0%
!! ATTATAAACAAAGATGAAGA+TGG - chr1.2:3845295-3845314 MS.gene044016:CDS 20.0%
!! ATTGTTTGAATAATGTGTTT+GGG + chr1.2:3845070-3845089 None:intergenic 20.0%
!! CTAAATCTATATACTTGAAA+AGG - chr1.2:3844198-3844217 MS.gene044016:intron 20.0%
!! GATATAATCAAATTCAAATC+TGG + chr1.2:3844279-3844298 None:intergenic 20.0%
!! GATTTGAATTTGATTATATC+CGG - chr1.2:3844279-3844298 MS.gene044016:intron 20.0%
!! GGGTAAAAAAATTAAAAATC+CGG + chr1.2:3844258-3844277 None:intergenic 20.0%
!! TAAACTTAGTATTTAAACGT+TGG + chr1.2:3842435-3842454 None:intergenic 20.0%
!! TATATATATTAGCGAAAAGT+CGG - chr1.2:3843146-3843165 MS.gene044016:intron 20.0%
!! TCAACTAAAAAGAGAAAATT+TGG - chr1.2:3844373-3844392 MS.gene044016:intron 20.0%
!! TTACCATACTATAATTTGAT+TGG - chr1.2:3842731-3842750 MS.gene044016:intron 20.0%
!!! ATGTGTTATTTATTTGTTGA+AGG - chr1.2:3844783-3844802 MS.gene044016:intron 20.0%
!!! ATTATTATTATTGTTGTTGG+TGG - chr1.2:3843806-3843825 MS.gene044016:intron 20.0%
!!! GAAAGAAAAAAAAGATTTTG+AGG + chr1.2:3843105-3843124 None:intergenic 20.0%
!!! GAAATTGGTTTTGATTAAAA+AGG - chr1.2:3842959-3842978 MS.gene044016:intron 20.0%
!!! TACCTCATGAATTATTTTTT+TGG - chr1.2:3842398-3842417 MS.gene044016:intron 20.0%
!!! TTTTCTGTATTTTTTGGATT+GGG + chr1.2:3842606-3842625 None:intergenic 20.0%
!!! TTTTTCTGTATTTTTTGGAT+TGG + chr1.2:3842607-3842626 None:intergenic 20.0%
! AAAAATTTCAAACCTACAGA+TGG - chr1.2:3841898-3841917 MS.gene044016:CDS 25.0%
! AAGAGAAAAAACAAATACGA+CGG + chr1.2:3842872-3842891 None:intergenic 25.0%
! AATATATCAACAAAATCCCT+GGG + chr1.2:3844811-3844830 None:intergenic 25.0%
! ATCTTTGATTAACAATGCTT+CGG - chr1.2:3842290-3842309 MS.gene044016:intron 25.0%
! CAATAAAAAGAGTGGAAAAA+TGG + chr1.2:3843184-3843203 None:intergenic 25.0%
! CATTGTTTGAATAATGTGTT+TGG + chr1.2:3845071-3845090 None:intergenic 25.0%
! GAAAAATCTAACAAAGAAGA+TGG - chr1.2:3845265-3845284 MS.gene044016:CDS 25.0%
! GTCATTGAAATAGATAATCA+TGG + chr1.2:3843311-3843330 None:intergenic 25.0%
! TAACATTTGAACAAGATTAC+CGG + chr1.2:3844301-3844320 None:intergenic 25.0%
! TAATATATCAACAAAATCCC+TGG + chr1.2:3844812-3844831 None:intergenic 25.0%
! TAGCCAATCAAATTATAGTA+TGG + chr1.2:3842737-3842756 None:intergenic 25.0%
! TCAAGAACATTGATATAGTT+GGG + chr1.2:3841973-3841992 None:intergenic 25.0%
! TGGAAATATCAAGATTGATT+TGG - chr1.2:3845219-3845238 MS.gene044016:CDS 25.0%
! TGTTAATCAAAGATATGTGA+AGG + chr1.2:3842284-3842303 None:intergenic 25.0%
! TTCAAGAACATTGATATAGT+TGG + chr1.2:3841974-3841993 None:intergenic 25.0%
! TTCACAAATGATCATATGTA+AGG - chr1.2:3844842-3844861 MS.gene044016:intron 25.0%
! TTTCCTTTATCCCTTAAAAA+GGG + chr1.2:3843477-3843496 None:intergenic 25.0%
!! AATTTGGATCAATATTTTCC+TGG + chr1.2:3845180-3845199 None:intergenic 25.0%
!! CTTAAACAAGCTTGTTTAAA+AGG + chr1.2:3843058-3843077 None:intergenic 25.0%
!! CTTTTGCATTCTTGATTTTT+AGG - chr1.2:3844597-3844616 MS.gene044016:CDS 25.0%
!! TTTGGAACAAGAATGAAATT+TGG - chr1.2:3844391-3844410 MS.gene044016:intron 25.0%
!! TTTTCCTTTATCCCTTAAAA+AGG + chr1.2:3843478-3843497 None:intergenic 25.0%
!! TTTTTCCACTCTTTTTATTG+CGG - chr1.2:3843184-3843203 MS.gene044016:intron 25.0%
!!! AAAGTGATTTTTTTGTGTGT+GGG - chr1.2:3842792-3842811 MS.gene044016:intron 25.0%
!!! ACTAATTAGGGTTTATTTTC+TGG - chr1.2:3842456-3842475 MS.gene044016:intron 25.0%
!!! AGAAAAAAAAGATTTTGAGG+TGG + chr1.2:3843102-3843121 None:intergenic 25.0%
!!! GGACTATGATTTACTTTTTA+AGG + chr1.2:3844974-3844993 None:intergenic 25.0%
!!! GTTTCTTTGTGATTTTTTTG+TGG - chr1.2:3843846-3843865 MS.gene044016:intron 25.0%
!!! TAAAGTGATTTTTTTGTGTG+TGG - chr1.2:3842791-3842810 MS.gene044016:intron 25.0%
!!! TACTTTTTAAGGTGAATAAG+TGG + chr1.2:3844963-3844982 None:intergenic 25.0%
!!! TAGTTTGTTACCCTTTTTAA+GGG - chr1.2:3843464-3843483 MS.gene044016:intron 25.0%
!!! TCAAGTTGATTTCTTGAATT+TGG + chr1.2:3845196-3845215 None:intergenic 25.0%
!!! TTGGTTTTGATTAAAAAGGA+TGG - chr1.2:3842963-3842982 MS.gene044016:intron 25.0%
!!! TTTGTCAACTATACTTTTTC+CGG + chr1.2:3842169-3842188 None:intergenic 25.0%
AGAGAAAAAACAAATACGAC+GGG + chr1.2:3842871-3842890 None:intergenic 30.0%
AGTATGGTAACTTACAGATA+TGG + chr1.2:3842721-3842740 None:intergenic 30.0%
ATTGAAATGATTCCAAATCC+TGG - chr1.2:3845394-3845413 MS.gene044016:CDS 30.0%
GAACCAAAATGTCAATCAAA+TGG - chr1.2:3844652-3844671 MS.gene044016:CDS 30.0%
GCATTGTTATATGAAGATGT+CGG - chr1.2:3844919-3844938 MS.gene044016:intron 30.0%
GCTATTTGTATTGAAAGTTG+AGG - chr1.2:3843581-3843600 MS.gene044016:intron 30.0%
TATCGTGAACTTTATTGTAG+AGG + chr1.2:3841942-3841961 None:intergenic 30.0%
TCAAGAAATCAACTTGATAG+TGG - chr1.2:3845199-3845218 MS.gene044016:CDS 30.0%
TCATCAAGTGAGAATTTGAT+TGG + chr1.2:3842641-3842660 None:intergenic 30.0%
TGATACCATAAAGAATCCTT+GGG - chr1.2:3842005-3842024 MS.gene044016:CDS 30.0%
TTGATACCATAAAGAATCCT+TGG - chr1.2:3842004-3842023 MS.gene044016:CDS 30.0%
TTTATCATGTTCAACTTTGC+TGG + chr1.2:3844446-3844465 None:intergenic 30.0%
! AAACGTTTGATTCGTACTAT+TGG - chr1.2:3842117-3842136 MS.gene044016:intron 30.0%
! ATAACATGTTTTGCCTCTTT+TGG + chr1.2:3843634-3843653 None:intergenic 30.0%
! ATTATTATTGTTGTTGGTGG+TGG - chr1.2:3843809-3843828 MS.gene044016:intron 30.0%
! TAACATGTTTTGCCTCTTTT+GGG + chr1.2:3843633-3843652 None:intergenic 30.0%
! TCAAAGTGACAATTTTTCCT+TGG - chr1.2:3842495-3842514 MS.gene044016:intron 30.0%
! TTGATTCGTACTATTGGAAT+TGG - chr1.2:3842123-3842142 MS.gene044016:intron 30.0%
!! TTACCCTTTTTAAGGGATAA+AGG - chr1.2:3843471-3843490 MS.gene044016:intron 30.0%
!!! CTAGTTTGTTACCCTTTTTA+AGG - chr1.2:3843463-3843482 MS.gene044016:intron 30.0%
!!! GAAACGTTTTTTTAGACCTA+GGG + chr1.2:3842205-3842224 None:intergenic 30.0%
AAAGAATCCTTGGGAGATTT+GGG - chr1.2:3842014-3842033 MS.gene044016:CDS 35.0%
AAGAGTTACACTTCTCAAGA+TGG - chr1.2:3842234-3842253 MS.gene044016:intron 35.0%
AAGGGTGGTCACTATTTAAT+AGG + chr1.2:3842379-3842398 None:intergenic 35.0%
AAGTGTAACTCTTCTCAAAG+CGG + chr1.2:3842227-3842246 None:intergenic 35.0%
AATAATTCATGAGGTAAGGG+TGG + chr1.2:3842394-3842413 None:intergenic 35.0%
AATCTCCCAAGGATTCTTTA+TGG + chr1.2:3842013-3842032 None:intergenic 35.0%
ACGAATCAAACGTTTACTAG+TGG + chr1.2:3842112-3842131 None:intergenic 35.0%
AGTATAGTTGACAAAGAGAC+CGG - chr1.2:3842174-3842193 MS.gene044016:intron 35.0%
AGTGGCAGATTTCTTCTTTA+AGG + chr1.2:3842094-3842113 None:intergenic 35.0%
ATGAAGATGGTGATATCTCT+TGG - chr1.2:3845308-3845327 MS.gene044016:CDS 35.0%
CCAAAATGTCAATCAAATGG+TGG - chr1.2:3844655-3844674 MS.gene044016:CDS 35.0%
GAGAAAAAACAAATACGACG+GGG + chr1.2:3842870-3842889 None:intergenic 35.0%
TAAACATAGCAATGTTTGCC+AGG + chr1.2:3845415-3845434 None:intergenic 35.0%
TAAAGAATCCTTGGGAGATT+TGG - chr1.2:3842013-3842032 MS.gene044016:CDS 35.0%
TAAATGTGTGCACAATACCA+AGG + chr1.2:3842515-3842534 None:intergenic 35.0%
TACCAAGTGATATATGCACA+CGG + chr1.2:3844891-3844910 None:intergenic 35.0%
TACTATTGGAATTGGTACGT+GGG - chr1.2:3842131-3842150 MS.gene044016:intron 35.0%
TCTCACTTGATGAATAGCAT+TGG - chr1.2:3842648-3842667 MS.gene044016:intron 35.0%
TCTGCATAGAACATAATTGC+TGG + chr1.2:3842565-3842584 None:intergenic 35.0%
TTCTCACTCATATCATGGAA+AGG - chr1.2:3842050-3842069 MS.gene044016:CDS 35.0%
TTTGATTGCAAGAGTCTTTC+CGG - chr1.2:3844236-3844255 MS.gene044016:intron 35.0%
! AATGCAGGAGCACAATAATA+AGG + chr1.2:3845149-3845168 None:intergenic 35.0%
! AGATTTTTCCTCTGTCGTAT+TGG + chr1.2:3845254-3845273 None:intergenic 35.0%
! CCACCATTTGATTGACATTT+TGG + chr1.2:3844658-3844677 None:intergenic 35.0%
! TGCTGGTCAGCTAAAAATTT+TGG + chr1.2:3844429-3844448 None:intergenic 35.0%
! TTATTTGTTGAAGGAACCCA+GGG - chr1.2:3844792-3844811 MS.gene044016:intron 35.0%
! TTTAGGACATCATTGTTTCG+AGG - chr1.2:3844614-3844633 MS.gene044016:CDS 35.0%
! TTTATTTGTTGAAGGAACCC+AGG - chr1.2:3844791-3844810 MS.gene044016:intron 35.0%
!! AATCAAATGGTGGACACAAA+AGG - chr1.2:3844665-3844684 MS.gene044016:CDS 35.0%
!!! GGAAACGTTTTTTTAGACCT+AGG + chr1.2:3842206-3842225 None:intergenic 35.0%
!!! GTTTTTTTAGACCTAGGGTT+TGG + chr1.2:3842200-3842219 None:intergenic 35.0%
ACATTGATATAGTTGGGCAC+TGG + chr1.2:3841967-3841986 None:intergenic 40.0%
ACCAAGTGATATATGCACAC+GGG + chr1.2:3844890-3844909 None:intergenic 40.0%
AGAAAATGTCAGCCCAAAAG+AGG - chr1.2:3843618-3843637 MS.gene044016:intron 40.0%
AGTTACACTTCTCAAGATGG+TGG - chr1.2:3842237-3842256 MS.gene044016:intron 40.0%
CATCACCGCAATAAAAAGAG+TGG + chr1.2:3843192-3843211 None:intergenic 40.0%
GCAAGTTCTCACTCATATCA+TGG - chr1.2:3842045-3842064 MS.gene044016:CDS 40.0%
GTACTATTGGAATTGGTACG+TGG - chr1.2:3842130-3842149 MS.gene044016:intron 40.0%
TAGCAATGTTTGCCAGGATT+TGG + chr1.2:3845409-3845428 None:intergenic 40.0%
TGAAGGAAGGTTAATCGAAG+AGG - chr1.2:3845366-3845385 MS.gene044016:CDS 40.0%
TTCCTGGAAAATGAGAATGC+AGG + chr1.2:3845164-3845183 None:intergenic 40.0%
! AGCATTGGACAAGATAAGCA+AGG - chr1.2:3842663-3842682 MS.gene044016:intron 40.0%
! TTTTGCAAGGGAACTCATAG+AGG - chr1.2:3845339-3845358 MS.gene044016:CDS 40.0%
!! AGCTTTAAGTCCAAGAACCA+CGG + chr1.2:3844722-3844741 None:intergenic 40.0%
!! ATTATTGTTGTTGGTGGTGG+TGG - chr1.2:3843812-3843831 MS.gene044016:intron 40.0%
!! TAAAAGTGCCAATACGACAG+AGG - chr1.2:3845243-3845262 MS.gene044016:CDS 40.0%
!!! CTGCTTTTGCGTTTTTTTGC+AGG - chr1.2:3842539-3842558 MS.gene044016:intron 40.0%
AACTCTTCCCAAATCTCCCA+AGG + chr1.2:3842024-3842043 None:intergenic 45.0%
AGGAAGGTTAATCGAAGAGG+AGG - chr1.2:3845369-3845388 MS.gene044016:CDS 45.0%
AGTTCCCTTGCAAAAAGCTC+AGG + chr1.2:3845334-3845353 None:intergenic 45.0%
CAAGGAAAGACAGTTGTTCC+CGG - chr1.2:3842681-3842700 MS.gene044016:intron 45.0%
CCAAGTGATATATGCACACG+GGG + chr1.2:3844889-3844908 None:intergenic 45.0%
CGAAGAAGTTCACCATCTGT+AGG + chr1.2:3841913-3841932 None:intergenic 45.0%
GAACTCATAGAGGCGAATGA+AGG - chr1.2:3845349-3845368 MS.gene044016:CDS 45.0%
GGACACAAAAGGAGAAAGGT+GGG - chr1.2:3844676-3844695 MS.gene044016:CDS 45.0%
GGAGAAAGGTGGGAAATACT+TGG - chr1.2:3844686-3844705 MS.gene044016:CDS 45.0%
TCATAGAGGCGAATGAAGGA+AGG - chr1.2:3845353-3845372 MS.gene044016:CDS 45.0%
TGGACACAAAAGGAGAAAGG+TGG - chr1.2:3844675-3844694 MS.gene044016:CDS 45.0%
! CTCCTGCATTCTCATTTTCC+AGG - chr1.2:3845159-3845178 MS.gene044016:CDS 45.0%
! TGGTGGACACAAAAGGAGAA+AGG - chr1.2:3844672-3844691 MS.gene044016:CDS 45.0%
! TTGGCCTGAGCTTTTTGCAA+GGG - chr1.2:3845327-3845346 MS.gene044016:CDS 45.0%
! TTTTAGACCTAGGGTTTGGC+CGG + chr1.2:3842196-3842215 None:intergenic 45.0%
!! ACACTTCTCAAGATGGTGGA+TGG - chr1.2:3842241-3842260 MS.gene044016:intron 45.0%
!!! GTTTTATTTATTTATTTTTT+TGG - chr1.2:3844071-3844090 MS.gene044016:intron 5.0%
!!! TTTTATTTAAATACAAAATT+TGG - chr1.2:3844342-3844361 MS.gene044016:intron 5.0%
!!! TTTTGTATTTAAATAAAATT+TGG + chr1.2:3844340-3844359 None:intergenic 5.0%
CCAGAAAAGACCGTGGTTCT+TGG - chr1.2:3844709-3844728 MS.gene044016:CDS 50.0%
CCCCGTGTGCATATATCACT+TGG - chr1.2:3844886-3844905 MS.gene044016:intron 50.0%
TACTTGGCCAGAAAAGACCG+TGG - chr1.2:3844702-3844721 MS.gene044016:CDS 50.0%
! ACAGATATGGCGTTTTCCGC+AGG + chr1.2:3842708-3842727 None:intergenic 50.0%
! CCAAGAACCACGGTCTTTTC+TGG + chr1.2:3844712-3844731 None:intergenic 50.0%
! CTTGGCCTGAGCTTTTTGCA+AGG - chr1.2:3845326-3845345 MS.gene044016:CDS 50.0%
!! ATTGTTGTTGGTGGTGGTGG+TGG - chr1.2:3843815-3843834 MS.gene044016:intron 50.0%
AAAGAGACCGGCCAAACCCT+AGG - chr1.2:3842186-3842205 MS.gene044016:intron 55.0%
ACGTGGGAAGCTGAAGACAC+CGG - chr1.2:3842147-3842166 MS.gene044016:intron 55.0%
! TATGGCGTTTTCCGCAGGTC+CGG + chr1.2:3842703-3842722 None:intergenic 55.0%
GACAGTTGTTCCCGGACCTG+CGG - chr1.2:3842689-3842708 MS.gene044016:intron 60.0%
! ATGGCGTTTTCCGCAGGTCC+GGG + chr1.2:3842702-3842721 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3841874 3845435 3841874 ID=MS.gene044016
chr1.2 mRNA 3841874 3845435 3841874 ID=MS.gene044016.t1;Parent=MS.gene044016
chr1.2 exon 3844998 3845435 3844998 ID=MS.gene044016.t1.exon1;Parent=MS.gene044016.t1
chr1.2 CDS 3844998 3845435 3844998 ID=cds.MS.gene044016.t1;Parent=MS.gene044016.t1
chr1.2 exon 3844584 3844748 3844584 ID=MS.gene044016.t1.exon2;Parent=MS.gene044016.t1
chr1.2 CDS 3844584 3844748 3844584 ID=cds.MS.gene044016.t1;Parent=MS.gene044016.t1
chr1.2 exon 3841874 3842128 3841874 ID=MS.gene044016.t1.exon3;Parent=MS.gene044016.t1
chr1.2 CDS 3841874 3842128 3841874 ID=cds.MS.gene044016.t1;Parent=MS.gene044016.t1
Gene Sequence

>MS.gene044016

ATGGCTCACAATTCTCGATCAAGTAAAAATTTCAAACCTACAGATGGTGAACTTCTTCGATCATTCCTCTACAATAAAGTTCACGATATACCAGTGCCCAACTATATCAATGTTCTTGAATATGACTTATTTGATACCATAAAGAATCCTTGGGAGATTTGGGAAGAGTTTGCAAGTTCTCACTCATATCATGGAAAGGACTTATATTTCTTCACTACCTTAAAGAAGAAATCTGCCACTAGTAAACGTTTGATTCGTACTATTGGAATTGGTACGTGGGAAGCTGAAGACACCGGAAAAAGTATAGTTGACAAAGAGACCGGCCAAACCCTAGGTCTAAAAAAACGTTTCCGCTTTGAGAAGAGTTACACTTCTCAAGATGGTGGATGGATCTTGCATGAATATAGCCTTCACATATCTTTGATTAACAATGCTTCGGTAAGCAATATGATCATATATTTATATTTATATTTATATTTATATTATTAGTTAGTTAGTAGTACCTATTAAATAGTGACCACCCTTACCTCATGAATTATTTTTTTGGTTGAACTAAGACCAACGTTTAAATACTAAGTTTATACTAATTAGGGTTTATTTTCTGGTTTGTAGCACTGCATGTCAAAGTGACAATTTTTCCTTGGTATTGTGCACACATTTATAATCTGCTTTTGCGTTTTTTTGCAGGCCAGCAATTATGTTCTATGCAGATTCAGAAAGAATTTGAAACCCAATCCAAAAAATACAGAAAAAAGAATCGATGACCAATCAAATTCTCACTTGATGAATAGCATTGGACAAGATAAGCAAGGAAAGACAGTTGTTCCCGGACCTGCGGAAAACGCCATATCTGTAAGTTACCATACTATAATTTGATTGGCTACTAATATTATGTTAGCTTGATTAGTCGTTAATTATAAAGTGATTTTTTTGTGTGTGGGTGTCATAATTAGTGATTTTATGCATTCAAGATTGAGTTCTTCTCAACTTTGTCCCCGTCGTATTTGTTTTTTCTCTTCCCTTTTTTTATGTTAGCTTGATTTTATGCGTTCAAGATTTACTCTTTAATGAACAATATTTTTTATGAAATTGGTTTTGATTAAAAAGGATGGTATAAACATTTTTACTTTCAATTTGTAACGAACAATTCTTATCTTTTTCAATAAAACTAAATATAACATCCTTTTAAACAAGCTTGTTTAAGATTATAATTATAAGTGAAAAGCCACCTCAAAATCTTTTTTTTCTTTCTAAAAAATCATCTATTTTCTTTATATATATTAGCGAAAAGTCGGACACTCACGTATCCATTTTTCCACTCTTTTTATTGCGGTGATGTTTGAAAATTTACGAACGACGTTTTTTTTATGAAATTTTGATTAAAAGTAAAAATATAAATGATTTCTGCTTTCAAATTATAACAAATCAAACTAACCATGATTATCTATTTCAATGACACCAACAATATAACAAAAAAATATAATCTAAATTCTTATTTTTTTAATAACACTGATAACAATCTTTATTATAAAAAAAATTGTTTAAAAGTATAATTGGGATAATGAAAAAGTATGTATAGATATATTTTTCTAGTTTGTTACCCTTTTTAAGGGATAAAGGAAAAAAAATTGAACATATATAATCATATCGTGTTTGTTACACTTTTATTTTAATATTTGAATTTACTCTTATCTATTTGTTATGTGTGCTATTTGTATTGAAAGTTGAGGATAATTTTTGAAAAAGAAAATGTCAGCCCAAAAGAGGCAAAACATGTTATTTTCTTTATATATAGTATAGAAGTATAGATATAGATATAGATATATATATTTTTGGACAAAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAAGTATAGATATAGATTATTATTATTGTTGTTGGTGGTGGTGGTGGTTTTAGTTGTTTCTTTGTGATTTTTTTGTGGACAGTTGTTTCTTACCGAACAAATTTCTATTTTTTTTTATTTTACACTTGAAATTTTTAACAATGTTTATCTTGTTTATAAAATTTCAACTCTTCATGAAACCATTATTATTGCTAGCAATTTTTTTTTTTAATTTGCATATAACAAAAAACAAATTTTGTTGGAAAAAAACTTGAGTTTTCCAAATTAATAGTATTAATTAGTTTTATTTATTTATTTTTTTGGCTGAGTATTGATTAATGTTATTGAAAAAGAGTAAGTAAGAGTAATTGAAAAATGATATAATTGACAAACTGTACATTAACTATGAAAACGATTAAATCTGATCGCTAAATCTATATACTTGAAAAGGAACGAAGAAAATTGATTTGATTGCAAGAGTCTTTCCGGATTTTTAATTTTTTTACCCAGATTTGAATTTGATTATATCCGGTAATCTTGTTCAAATGTTATAGATTTTTTAGTTAACCAAATTTTATTTAAATACAAAATTTGGAATAAGAGTCAACTAAAAAGAGAAAATTTGGAACAAGAATGAAATTTGGAATATCGTCTCTCCAAAATTTTTAGCTGACCAGCAAAGTTGAACATGATAAAGTCTTTCCAAATCTTTTTTTTTTTTACATATTGAAATCAATTTTCTATTTTTACGATGTAATACTTTGTATATACAAATACAATCTTCCTTTCTATATGTAATGATAATTCAATTTTTTTTACTGAACACTCTTTTGCATTCTTGATTTTTAGGACATCATTGTTTCGAGGAAATTTGTTCATGAAGAACCAAAATGTCAATCAAATGGTGGACACAAAAGGAGAAAGGTGGGAAATACTTGGCCAGAAAAGACCGTGGTTCTTGGACTTAAAGCTATCACCAACATTGTATGTATTATTTGTGTGTTTCTGTATATATGTGTTATTTATTTGTTGAAGGAACCCAGGGATTTTGTTGATATATTAATATTAGTTATTCACAAATGATCATATGTAAGGTTTAATTTAAGAGAGTTTTGTCCCCGTGTGCATATATCACTTGGTATAGACAATGCATTGTTATATGAAGATGTCGGTGTTCGAATCTCGATACTCCACTTATTCACCTTAAAAAGTAAATCATAGTCCATTTATTTGATCTATTTTAACATTTTGAATTTTGTTAATTCATGTACTAACAAAAATTGTGTGTTTACTCTTACCCAAACACATTATTCAAACAATGAAAATTTAAATGAGAAACAAATATGAAATTCAAAAATTGTATTCATAAATTAACTCCTTATTATTGTGCTCCTGCATTCTCATTTTCCAGGAAAATATTGATCCAAATTCAAGAAATCAACTTGATAGTGGAAATATCAAGATTGATTTGGTTAAAAGTGCCAATACGACAGAGGAAAAATCTAACAAAGAAGATGGTGATCATATTATAAACAAAGATGAAGATGGTGATATCTCTTGGCCTGAGCTTTTTGCAAGGGAACTCATAGAGGCGAATGAAGGAAGGTTAATCGAAGAGGAGGATATTGAAATGATTCCAAATCCTGGCAAACATTGCTATGTTTAA
Protein sequence

>MS.gene044016.t1

MAHNSRSSKNFKPTDGELLRSFLYNKVHDIPVPNYINVLEYDLFDTIKNPWEIWEEFASSHSYHGKDLYFFTTLKKKSATSKRLIRTIGIGTWEAEDTGKSIVDKETGQTLGLKKRFRFEKSYTSQDGGWILHEYSLHISLINNASASNYVLCRFRKNLKPNPKNTEKRIDDQSNSHLMNSIGQDKQGKTVVPGPAENAISENIDPNSRNQLDSGNIKIDLVKSANTTEEKSNKEDGDHIINKDEDGDISWPELFARELIEANEGRLIEEEDIEMIPNPGKHCYV