Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04403.t1 | XP_003590850.2 | 80.8 | 390 | 58 | 3 | 1 | 382 | 72 | 452 | 5.60E-173 | 617.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04403.t1 | Q9LUZ4 | 54.5 | 391 | 157 | 9 | 1 | 376 | 54 | 438 | 1.1e-108 | 394.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04403.t1 | G7I4W5 | 80.8 | 390 | 58 | 3 | 1 | 382 | 72 | 452 | 4.0e-173 | 617.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04403.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04403.t1 | MTR_1g075890 | 79.487 | 390 | 63 | 2 | 1 | 382 | 72 | 452 | 0.0 | 591 |
| MS.gene04403.t1 | MTR_3g464260 | 72.468 | 385 | 57 | 5 | 1 | 382 | 64 | 402 | 0.0 | 519 |
| MS.gene04403.t1 | MTR_5g071070 | 60.190 | 422 | 125 | 9 | 1 | 382 | 74 | 492 | 1.30e-157 | 460 |
| MS.gene04403.t1 | MTR_5g071070 | 59.806 | 413 | 123 | 9 | 10 | 382 | 1 | 410 | 2.02e-153 | 446 |
| MS.gene04403.t1 | MTR_3g464280 | 62.304 | 382 | 83 | 3 | 1 | 382 | 56 | 376 | 1.95e-146 | 424 |
| MS.gene04403.t1 | MTR_5g082830 | 53.808 | 407 | 150 | 9 | 1 | 381 | 69 | 463 | 2.38e-137 | 407 |
| MS.gene04403.t1 | MTR_7g092070 | 47.796 | 431 | 169 | 10 | 1 | 381 | 86 | 510 | 7.88e-119 | 361 |
| MS.gene04403.t1 | MTR_3g029590 | 51.233 | 365 | 131 | 8 | 1 | 327 | 84 | 439 | 5.25e-112 | 343 |
| MS.gene04403.t1 | MTR_3g070880 | 50.610 | 328 | 104 | 6 | 1 | 326 | 49 | 320 | 2.28e-106 | 322 |
| MS.gene04403.t1 | MTR_1g050438 | 46.809 | 329 | 141 | 6 | 1 | 305 | 55 | 373 | 1.87e-90 | 284 |
| MS.gene04403.t1 | MTR_0728s0020 | 46.809 | 329 | 141 | 6 | 1 | 305 | 71 | 389 | 3.92e-90 | 284 |
| MS.gene04403.t1 | MTR_3g435590 | 47.649 | 319 | 148 | 4 | 1 | 301 | 71 | 388 | 4.08e-90 | 279 |
| MS.gene04403.t1 | MTR_3g464270 | 55.319 | 235 | 95 | 3 | 149 | 382 | 8 | 233 | 4.36e-78 | 244 |
| MS.gene04403.t1 | MTR_3g464290 | 54.965 | 282 | 91 | 6 | 104 | 382 | 54 | 302 | 6.30e-76 | 243 |
| MS.gene04403.t1 | MTR_3g435680 | 44.326 | 282 | 124 | 8 | 47 | 301 | 26 | 301 | 1.18e-69 | 224 |
| MS.gene04403.t1 | MTR_8g102100 | 53.049 | 164 | 71 | 1 | 146 | 303 | 77 | 240 | 1.62e-55 | 187 |
| MS.gene04403.t1 | MTR_6g090380 | 55.484 | 155 | 57 | 2 | 121 | 272 | 83 | 228 | 1.46e-54 | 184 |
| MS.gene04403.t1 | MTR_3g103960 | 59.701 | 134 | 52 | 2 | 140 | 271 | 43 | 176 | 1.23e-52 | 176 |
| MS.gene04403.t1 | MTR_2g090605 | 60.360 | 111 | 44 | 0 | 150 | 260 | 77 | 187 | 1.13e-48 | 170 |
| MS.gene04403.t1 | MTR_4g078660 | 57.009 | 107 | 46 | 0 | 146 | 252 | 56 | 162 | 2.87e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04403.t1 | AT5G58620 | 58.309 | 343 | 133 | 4 | 1 | 336 | 54 | 393 | 3.95e-137 | 404 |
| MS.gene04403.t1 | AT2G40140 | 52.162 | 370 | 152 | 5 | 1 | 367 | 73 | 420 | 7.07e-124 | 370 |
| MS.gene04403.t1 | AT2G40140 | 52.162 | 370 | 152 | 5 | 1 | 367 | 73 | 420 | 7.07e-124 | 370 |
| MS.gene04403.t1 | AT2G41900 | 47.608 | 418 | 167 | 9 | 1 | 381 | 87 | 489 | 1.45e-117 | 357 |
| MS.gene04403.t1 | AT5G12850 | 46.495 | 428 | 171 | 11 | 1 | 381 | 80 | 496 | 3.04e-117 | 356 |
| MS.gene04403.t1 | AT3G55980 | 54.103 | 329 | 133 | 6 | 1 | 326 | 69 | 382 | 7.89e-116 | 349 |
| MS.gene04403.t1 | AT3G55980 | 54.103 | 329 | 133 | 6 | 1 | 326 | 136 | 449 | 3.83e-115 | 349 |
| MS.gene04403.t1 | AT4G29190 | 50.000 | 178 | 67 | 3 | 139 | 309 | 68 | 230 | 3.84e-56 | 188 |
| MS.gene04403.t1 | AT5G07500 | 61.983 | 121 | 46 | 0 | 132 | 252 | 34 | 154 | 6.35e-55 | 181 |
| MS.gene04403.t1 | AT2G19810 | 62.295 | 122 | 44 | 1 | 135 | 254 | 61 | 182 | 2.86e-53 | 181 |
| MS.gene04403.t1 | AT2G25900 | 64.286 | 112 | 40 | 0 | 143 | 254 | 83 | 194 | 4.11e-53 | 179 |
| MS.gene04403.t1 | AT2G25900 | 64.286 | 112 | 40 | 0 | 143 | 254 | 83 | 194 | 4.11e-53 | 179 |
| MS.gene04403.t1 | AT1G03790 | 52.229 | 157 | 67 | 3 | 115 | 267 | 51 | 203 | 9.92e-51 | 175 |
| MS.gene04403.t1 | AT5G44260 | 57.812 | 128 | 49 | 2 | 128 | 254 | 42 | 165 | 1.22e-47 | 166 |
Find 85 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCATTGTGCTGTTTC+TGG | 0.098846 | 3.4:-57412040 | MS.gene04403:CDS |
| CTTATGGTTGCTGCCTTATT+TGG | 0.182687 | 3.4:-57412142 | MS.gene04403:CDS |
| TACTAACCTTAAAACACTTT+TGG | 0.208919 | 3.4:-57411045 | MS.gene04403:CDS |
| GGTGTGTTGTCTTATATTCT+TGG | 0.275343 | 3.4:-57412112 | MS.gene04403:CDS |
| CACACCCTTGCTTCCAAATA+AGG | 0.291991 | 3.4:+57412129 | None:intergenic |
| TTCTCGGCATTTGAAGGGTT+GGG | 0.308891 | 3.4:+57411204 | None:intergenic |
| TATATAGTACAGATGAATTT+AGG | 0.309340 | 3.4:-57411733 | MS.gene04403:CDS |
| CAAGGGCTTATTCTCATGAT+TGG | 0.318225 | 3.4:-57411682 | MS.gene04403:CDS |
| ACTCCTGCAAGCTTATTTGA+TGG | 0.329612 | 3.4:+57411074 | None:intergenic |
| CGAGTGTCCATTTGTTCACC+TGG | 0.330093 | 3.4:-57411657 | MS.gene04403:CDS |
| CTTGTTGCTGCTCCACCGTT+TGG | 0.345377 | 3.4:+57411828 | None:intergenic |
| GTGTACCTTGCCCCGAGTTT+CGG | 0.361454 | 3.4:-57411589 | MS.gene04403:CDS |
| TCTCCATCAAATAAGCTTGC+AGG | 0.370221 | 3.4:-57411077 | MS.gene04403:CDS |
| ATCTGTTTCTCGGCATTTGA+AGG | 0.372092 | 3.4:+57411198 | None:intergenic |
| TTCACCTAGCGTTTCTTCAA+TGG | 0.372342 | 3.4:-57411357 | MS.gene04403:CDS |
| AGCAAAGAAGCAAACCCTTC+TGG | 0.372700 | 3.4:+57411454 | None:intergenic |
| CTAATAGTATCTTCGGTTCA+AGG | 0.385082 | 3.4:-57411907 | MS.gene04403:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.399251 | 3.4:-57412158 | MS.gene04403:CDS |
| CTTCCTTGCAAAGCCTTGTT+CGG | 0.403908 | 3.4:+57411489 | None:intergenic |
| TTTCTCGGCATTTGAAGGGT+TGG | 0.421787 | 3.4:+57411203 | None:intergenic |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 3.4:-57411700 | MS.gene04403:CDS |
| TCGATTAACATCGACACAAC+CGG | 0.437571 | 3.4:+57412087 | None:intergenic |
| CCATCATTAGCTTACACATA+AGG | 0.444911 | 3.4:+57411120 | None:intergenic |
| TTGTCTTATATTCTTGGAAC+CGG | 0.445771 | 3.4:-57412106 | MS.gene04403:CDS |
| AAAACTGCACAAAATACTAT+AGG | 0.447954 | 3.4:-57411173 | MS.gene04403:CDS |
| GCAAACCCTTCTGGTGCATC+CGG | 0.454052 | 3.4:+57411463 | None:intergenic |
| CAGTTGATATGAACGGTAAC+CGG | 0.454347 | 3.4:-57411955 | MS.gene04403:CDS |
| GCACGACCCTTTCCGAAACT+CGG | 0.454722 | 3.4:+57411577 | None:intergenic |
| TAATCTTTCTTCTCAGTTCG+AGG | 0.455693 | 3.4:+57411794 | None:intergenic |
| TCGGCTTCTAATAGTATCTT+CGG | 0.460320 | 3.4:-57411914 | MS.gene04403:CDS |
| GCAGCATCATCGCATGCAGC+TGG | 0.462576 | 3.4:-57411266 | MS.gene04403:CDS |
| TGCTGCCTTATTTGGAAGCA+AGG | 0.473427 | 3.4:-57412134 | MS.gene04403:CDS |
| CACGACCCTTTCCGAAACTC+GGG | 0.473623 | 3.4:+57411578 | None:intergenic |
| AATAAGGCAGCAACCATAAG+AGG | 0.478339 | 3.4:+57412145 | None:intergenic |
| TACAACGGTCGAAGCTCCTC+TGG | 0.485266 | 3.4:+57411425 | None:intergenic |
| AGGCTTTGCAAGGAAGGAAC+CGG | 0.488722 | 3.4:-57411482 | MS.gene04403:CDS |
| CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | 3.4:-57411413 | MS.gene04403:CDS |
| AGCCTTGTTCGGTATTGAGC+AGG | 0.501073 | 3.4:+57411500 | None:intergenic |
| AGGTGAAGGCAAAGCAGAAC+CGG | 0.502979 | 3.4:+57411394 | None:intergenic |
| CGAACAAGGCTTTGCAAGGA+AGG | 0.512498 | 3.4:-57411488 | MS.gene04403:CDS |
| CCTTATGTGTAAGCTAATGA+TGG | 0.517096 | 3.4:-57411120 | MS.gene04403:CDS |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 3.4:-57411699 | MS.gene04403:CDS |
| TCGAGTGTGCGGCTCAGATA+AGG | 0.525383 | 3.4:-57412068 | MS.gene04403:CDS |
| TCAGGTAGGGATGGATCAAT+CGG | 0.525749 | 3.4:+57411770 | None:intergenic |
| GTATCTTCGGTTCAAGGAAG+AGG | 0.528667 | 3.4:-57411901 | MS.gene04403:CDS |
| CTTGCCCCGAGTTTCGGAAA+GGG | 0.535224 | 3.4:-57411583 | MS.gene04403:CDS |
| TCTGTTTCTCGGCATTTGAA+GGG | 0.538648 | 3.4:+57411199 | None:intergenic |
| CCTTGCCCCGAGTTTCGGAA+AGG | 0.539238 | 3.4:-57411584 | MS.gene04403:CDS |
| GAAATTAGGTTTCCAAACGG+TGG | 0.540685 | 3.4:-57411840 | MS.gene04403:CDS |
| GCTGCCTTATTTGGAAGCAA+GGG | 0.541989 | 3.4:-57412133 | MS.gene04403:CDS |
| TAAGAAATTAGGTTTCCAAA+CGG | 0.542543 | 3.4:-57411843 | MS.gene04403:CDS |
| ATGCAAGGCGTCGTGATCCG+AGG | 0.550851 | 3.4:-57411628 | MS.gene04403:CDS |
| GATGGAGTCAAAGGTGGTGT+CGG | 0.552343 | 3.4:+57411290 | None:intergenic |
| GGTGAATTTGAATATGATGT+AGG | 0.568172 | 3.4:+57411374 | None:intergenic |
| TTGTTCTGCTGCTTCTTCTG+AGG | 0.570736 | 3.4:-57412017 | MS.gene04403:CDS |
| GAAGAGGATACTACTAGAAG+AGG | 0.573450 | 3.4:-57411885 | MS.gene04403:CDS |
| CATGTGTAATGATATTTCCT+CGG | 0.575514 | 3.4:+57411611 | None:intergenic |
| GAGTGTCCATTTGTTCACCT+GGG | 0.577241 | 3.4:-57411656 | MS.gene04403:CDS |
| ATCCTGCTCAATACCGAACA+AGG | 0.577844 | 3.4:-57411502 | MS.gene04403:CDS |
| CTTCTTTGCTCACAAACCAG+AGG | 0.579205 | 3.4:-57411441 | MS.gene04403:CDS |
| CCTTTCCGAAACTCGGGGCA+AGG | 0.585775 | 3.4:+57411584 | None:intergenic |
| CAGGTGAACAAATGGACACT+CGG | 0.589724 | 3.4:+57411658 | None:intergenic |
| GTTAGTTCAGTTGATATGAA+CGG | 0.593158 | 3.4:-57411962 | MS.gene04403:CDS |
| ATACCGAACAAGGCTTTGCA+AGG | 0.594223 | 3.4:-57411492 | MS.gene04403:CDS |
| GCATGCGATGATGCTGCAGA+TGG | 0.598498 | 3.4:+57411272 | None:intergenic |
| AGACAATCAAGTCGCTACAC+CGG | 0.604044 | 3.4:+57411936 | None:intergenic |
| GAATCCATTGAAGAAACGCT+AGG | 0.604702 | 3.4:+57411353 | None:intergenic |
| AAGGAACCGGATGCACCAGA+AGG | 0.605474 | 3.4:-57411469 | MS.gene04403:CDS |
| GTGGAGCAGCAACAAGATGT+AGG | 0.608133 | 3.4:-57411821 | MS.gene04403:CDS |
| GTGTAGCGACTTGATTGTCT+CGG | 0.619917 | 3.4:-57411933 | MS.gene04403:CDS |
| AGGAAATGGCATATGAAGAG+AGG | 0.622410 | 3.4:-57412171 | None:intergenic |
| AGTGTCCATTTGTTCACCTG+GGG | 0.622949 | 3.4:-57411655 | MS.gene04403:CDS |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | 3.4:+57411689 | None:intergenic |
| CTAATGATGGAAGAGAAGAC+AGG | 0.628766 | 3.4:-57411107 | MS.gene04403:CDS |
| CTGAATCTGAGTCTGCCACA+TGG | 0.636502 | 3.4:+57411241 | None:intergenic |
| TTTGAATATGATGTAGGTGA+AGG | 0.636602 | 3.4:+57411380 | None:intergenic |
| AGGAACCGGATGCACCAGAA+GGG | 0.647933 | 3.4:-57411468 | MS.gene04403:CDS |
| GATGCTGCAGATGGAGTCAA+AGG | 0.650089 | 3.4:+57411281 | None:intergenic |
| ACGACCCTTTCCGAAACTCG+GGG | 0.660326 | 3.4:+57411579 | None:intergenic |
| GTCGATGTTAATCGAGTGTG+CGG | 0.681504 | 3.4:-57412079 | MS.gene04403:CDS |
| GTGTCCATTTGTTCACCTGG+GGG | 0.681863 | 3.4:-57411654 | MS.gene04403:CDS |
| GCTGCAGATGGAGTCAAAGG+TGG | 0.704806 | 3.4:+57411284 | None:intergenic |
| CGCATGCAGCTGGAACCATG+TGG | 0.722861 | 3.4:-57411256 | MS.gene04403:CDS |
| GATGCTTGTGAATATGCACA+TGG | 0.753418 | 3.4:-57411545 | MS.gene04403:CDS |
| GAACCGGTAGAAGCATACAA+CGG | 0.780700 | 3.4:+57411410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGTACAGATGAATTT+AGG | - | chr3.4:57411470-57411489 | MS.gene04403:CDS | 20.0% |
| ! | AAAACTGCACAAAATACTAT+AGG | - | chr3.4:57412030-57412049 | MS.gene04403:CDS | 25.0% |
| ! | TAAGAAATTAGGTTTCCAAA+CGG | - | chr3.4:57411360-57411379 | MS.gene04403:CDS | 25.0% |
| !! | ACTAACCTTAAAACACTTTT+GGG | - | chr3.4:57412159-57412178 | MS.gene04403:CDS | 25.0% |
| !! | GACGATTTTCTTAAGAAATT+AGG | - | chr3.4:57411349-57411368 | MS.gene04403:CDS | 25.0% |
| !! | GCAGATTTTATCAAAAAAGA+CGG | + | chr3.4:57411892-57411911 | None:intergenic | 25.0% |
| !! | TACTAACCTTAAAACACTTT+TGG | - | chr3.4:57412158-57412177 | MS.gene04403:CDS | 25.0% |
| !!! | AAAAGTGTTTTAAGGTTAGT+AGG | + | chr3.4:57412159-57412178 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGTTCGATACATT+CGG | + | chr3.4:57412061-57412080 | None:intergenic | 25.0% |
| CATGTGTAATGATATTTCCT+CGG | + | chr3.4:57411595-57411614 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+AGG | + | chr3.4:57411832-57411851 | None:intergenic | 30.0% | |
| TTGTCTTATATTCTTGGAAC+CGG | - | chr3.4:57411097-57411116 | MS.gene04403:CDS | 30.0% | |
| TTTGAATATGATGTAGGTGA+AGG | + | chr3.4:57411826-57411845 | None:intergenic | 30.0% | |
| ! | GTTAGTTCAGTTGATATGAA+CGG | - | chr3.4:57411241-57411260 | MS.gene04403:CDS | 30.0% |
| ! | TATATCCCAGTTTTTATGTC+AGG | + | chr3.4:57411454-57411473 | None:intergenic | 30.0% |
| !! | CACATGGTATTTTTGAATGT+TGG | - | chr3.4:57411674-57411693 | MS.gene04403:CDS | 30.0% |
| !!! | AATGACCCAAAAGTGTTTTA+AGG | + | chr3.4:57412167-57412186 | None:intergenic | 30.0% |
| CCTTATGTGTAAGCTAATGA+TGG | - | chr3.4:57412083-57412102 | MS.gene04403:CDS | 35.0% | |
| CTAATAGTATCTTCGGTTCA+AGG | - | chr3.4:57411296-57411315 | MS.gene04403:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+TGG | - | chr3.4:57411091-57411110 | MS.gene04403:CDS | 35.0% | |
| TAATCTTTCTTCTCAGTTCG+AGG | + | chr3.4:57411412-57411431 | None:intergenic | 35.0% | |
| TCGGCTTCTAATAGTATCTT+CGG | - | chr3.4:57411289-57411308 | MS.gene04403:CDS | 35.0% | |
| ! | CCATCATTAGCTTACACATA+AGG | + | chr3.4:57412086-57412105 | None:intergenic | 35.0% |
| !! | GCAGTTTTCAATCTGTTTCT+CGG | + | chr3.4:57412018-57412037 | None:intergenic | 35.0% |
| AATAAGGCAGCAACCATAAG+AGG | + | chr3.4:57411061-57411080 | None:intergenic | 40.0% | |
| ACTCCTGCAAGCTTATTTGA+TGG | + | chr3.4:57412132-57412151 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | - | chr3.4:57411521-57411540 | MS.gene04403:CDS | 40.0% | |
| CCCTACCTGACATAAAAACT+GGG | - | chr3.4:57411446-57411465 | MS.gene04403:CDS | 40.0% | |
| GAAATTAGGTTTCCAAACGG+TGG | - | chr3.4:57411363-57411382 | MS.gene04403:CDS | 40.0% | |
| GAAGAGGATACTACTAGAAG+AGG | - | chr3.4:57411318-57411337 | MS.gene04403:CDS | 40.0% | |
| GAATCCATTGAAGAAACGCT+AGG | + | chr3.4:57411853-57411872 | None:intergenic | 40.0% | |
| GATGCTTGTGAATATGCACA+TGG | - | chr3.4:57411658-57411677 | MS.gene04403:CDS | 40.0% | |
| TCCCTACCTGACATAAAAAC+TGG | - | chr3.4:57411445-57411464 | MS.gene04403:CDS | 40.0% | |
| TCGATTAACATCGACACAAC+CGG | + | chr3.4:57411119-57411138 | None:intergenic | 40.0% | |
| TCTCCATCAAATAAGCTTGC+AGG | - | chr3.4:57412126-57412145 | MS.gene04403:CDS | 40.0% | |
| TGAGAATAAGCCCTTGAACA+AGG | + | chr3.4:57411517-57411536 | None:intergenic | 40.0% | |
| TTCACCTAGCGTTTCTTCAA+TGG | - | chr3.4:57411846-57411865 | MS.gene04403:CDS | 40.0% | |
| ! | ATCTGTTTCTCGGCATTTGA+AGG | + | chr3.4:57412008-57412027 | None:intergenic | 40.0% |
| ! | CAGTTGATATGAACGGTAAC+CGG | - | chr3.4:57411248-57411267 | MS.gene04403:CDS | 40.0% |
| ! | CCCAGTTTTTATGTCAGGTA+GGG | + | chr3.4:57411449-57411468 | None:intergenic | 40.0% |
| ! | CTAATGATGGAAGAGAAGAC+AGG | - | chr3.4:57412096-57412115 | MS.gene04403:CDS | 40.0% |
| ! | CTTATGGTTGCTGCCTTATT+TGG | - | chr3.4:57411061-57411080 | MS.gene04403:CDS | 40.0% |
| ! | GTTTTTATGTCAGGTAGGGA+TGG | + | chr3.4:57411445-57411464 | None:intergenic | 40.0% |
| ! | TCCCAGTTTTTATGTCAGGT+AGG | + | chr3.4:57411450-57411469 | None:intergenic | 40.0% |
| ! | TCTGTTTCTCGGCATTTGAA+GGG | + | chr3.4:57412007-57412026 | None:intergenic | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | - | chr3.4:57411504-57411523 | MS.gene04403:CDS | 40.0% |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | - | chr3.4:57411503-57411522 | MS.gene04403:CDS | 40.0% |
| AGACAATCAAGTCGCTACAC+CGG | + | chr3.4:57411270-57411289 | None:intergenic | 45.0% | |
| AGCAAAGAAGCAAACCCTTC+TGG | + | chr3.4:57411752-57411771 | None:intergenic | 45.0% | |
| AGTGTCCATTTGTTCACCTG+GGG | - | chr3.4:57411548-57411567 | MS.gene04403:CDS | 45.0% | |
| ATACCGAACAAGGCTTTGCA+AGG | - | chr3.4:57411711-57411730 | MS.gene04403:CDS | 45.0% | |
| ATCCTGCTCAATACCGAACA+AGG | - | chr3.4:57411701-57411720 | MS.gene04403:CDS | 45.0% | |
| CACACCCTTGCTTCCAAATA+AGG | + | chr3.4:57411077-57411096 | None:intergenic | 45.0% | |
| CAGGTGAACAAATGGACACT+CGG | + | chr3.4:57411548-57411567 | None:intergenic | 45.0% | |
| CTTCTTTGCTCACAAACCAG+AGG | - | chr3.4:57411762-57411781 | MS.gene04403:CDS | 45.0% | |
| GAGTGTCCATTTGTTCACCT+GGG | - | chr3.4:57411547-57411566 | MS.gene04403:CDS | 45.0% | |
| GTATCTTCGGTTCAAGGAAG+AGG | - | chr3.4:57411302-57411321 | MS.gene04403:CDS | 45.0% | |
| GTCGATGTTAATCGAGTGTG+CGG | - | chr3.4:57411124-57411143 | MS.gene04403:CDS | 45.0% | |
| GTGTAGCGACTTGATTGTCT+CGG | - | chr3.4:57411270-57411289 | MS.gene04403:CDS | 45.0% | |
| TCAGGTAGGGATGGATCAAT+CGG | + | chr3.4:57411436-57411455 | None:intergenic | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | - | chr3.4:57411045-57411064 | MS.gene04403:CDS | 45.0% | |
| TTCTCGGCATTTGAAGGGTT+GGG | + | chr3.4:57412002-57412021 | None:intergenic | 45.0% | |
| TTTCTCGGCATTTGAAGGGT+TGG | + | chr3.4:57412003-57412022 | None:intergenic | 45.0% | |
| ! | GAACCGGTAGAAGCATACAA+CGG | + | chr3.4:57411796-57411815 | None:intergenic | 45.0% |
| ! | TTGTTCTGCTGCTTCTTCTG+AGG | - | chr3.4:57411186-57411205 | MS.gene04403:CDS | 45.0% |
| ! | TTTTCCCCCAGGTGAACAAA+TGG | + | chr3.4:57411556-57411575 | None:intergenic | 45.0% |
| !! | CTTCCTTGCAAAGCCTTGTT+CGG | + | chr3.4:57411717-57411736 | None:intergenic | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | - | chr3.4:57411163-57411182 | MS.gene04403:CDS | 45.0% |
| !! | GCTGCCTTATTTGGAAGCAA+GGG | - | chr3.4:57411070-57411089 | MS.gene04403:CDS | 45.0% |
| !! | TGCTGCCTTATTTGGAAGCA+AGG | - | chr3.4:57411069-57411088 | MS.gene04403:CDS | 45.0% |
| AGGCTTTGCAAGGAAGGAAC+CGG | - | chr3.4:57411721-57411740 | MS.gene04403:CDS | 50.0% | |
| AGGTGAAGGCAAAGCAGAAC+CGG | + | chr3.4:57411812-57411831 | None:intergenic | 50.0% | |
| CGAACAAGGCTTTGCAAGGA+AGG | - | chr3.4:57411715-57411734 | MS.gene04403:CDS | 50.0% | |
| CGACCGTTGTATGCTTCTAC+CGG | - | chr3.4:57411790-57411809 | MS.gene04403:CDS | 50.0% | |
| CGAGTGTCCATTTGTTCACC+TGG | - | chr3.4:57411546-57411565 | MS.gene04403:CDS | 50.0% | |
| CTGAATCTGAGTCTGCCACA+TGG | + | chr3.4:57411965-57411984 | None:intergenic | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | + | chr3.4:57411925-57411944 | None:intergenic | 50.0% | |
| GATGGAGTCAAAGGTGGTGT+CGG | + | chr3.4:57411916-57411935 | None:intergenic | 50.0% | |
| GTGGAGCAGCAACAAGATGT+AGG | - | chr3.4:57411382-57411401 | MS.gene04403:CDS | 50.0% | |
| GTGTCCATTTGTTCACCTGG+GGG | - | chr3.4:57411549-57411568 | MS.gene04403:CDS | 50.0% | |
| TTCACCTGGGGGAAAATGCA+AGG | - | chr3.4:57411560-57411579 | MS.gene04403:CDS | 50.0% | |
| !! | AGCCTTGTTCGGTATTGAGC+AGG | + | chr3.4:57411706-57411725 | None:intergenic | 50.0% |
| AAGGAACCGGATGCACCAGA+AGG | - | chr3.4:57411734-57411753 | MS.gene04403:CDS | 55.0% | |
| ACGACCCTTTCCGAAACTCG+GGG | + | chr3.4:57411627-57411646 | None:intergenic | 55.0% | |
| AGGAACCGGATGCACCAGAA+GGG | - | chr3.4:57411735-57411754 | MS.gene04403:CDS | 55.0% | |
| CACGACCCTTTCCGAAACTC+GGG | + | chr3.4:57411628-57411647 | None:intergenic | 55.0% | |
| CTTGCCCCGAGTTTCGGAAA+GGG | - | chr3.4:57411620-57411639 | MS.gene04403:CDS | 55.0% | |
| CTTGTTGCTGCTCCACCGTT+TGG | + | chr3.4:57411378-57411397 | None:intergenic | 55.0% | |
| GCAAACCCTTCTGGTGCATC+CGG | + | chr3.4:57411743-57411762 | None:intergenic | 55.0% | |
| GCACGACCCTTTCCGAAACT+CGG | + | chr3.4:57411629-57411648 | None:intergenic | 55.0% | |
| GCATGCGATGATGCTGCAGA+TGG | + | chr3.4:57411934-57411953 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | + | chr3.4:57411922-57411941 | None:intergenic | 55.0% | |
| GTGTACCTTGCCCCGAGTTT+CGG | - | chr3.4:57411614-57411633 | MS.gene04403:CDS | 55.0% | |
| TACAACGGTCGAAGCTCCTC+TGG | + | chr3.4:57411781-57411800 | None:intergenic | 55.0% | |
| TCGAGTGTGCGGCTCAGATA+AGG | - | chr3.4:57411135-57411154 | MS.gene04403:CDS | 55.0% | |
| CCTTGCCCCGAGTTTCGGAA+AGG | - | chr3.4:57411619-57411638 | MS.gene04403:CDS | 60.0% | |
| CCTTTCCGAAACTCGGGGCA+AGG | + | chr3.4:57411622-57411641 | None:intergenic | 60.0% | |
| CGCATGCAGCTGGAACCATG+TGG | - | chr3.4:57411947-57411966 | MS.gene04403:CDS | 60.0% | |
| GCAGCATCATCGCATGCAGC+TGG | - | chr3.4:57411937-57411956 | MS.gene04403:CDS | 60.0% | |
| ! | GACGCCTTGCATTTTCCCCC+AGG | + | chr3.4:57411567-57411586 | None:intergenic | 60.0% |
| !! | ATGCAAGGCGTCGTGATCCG+AGG | - | chr3.4:57411575-57411594 | MS.gene04403:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 57411037 | 57412188 | 57411037 | ID=MS.gene04403 |
| chr3.4 | mRNA | 57411037 | 57412188 | 57411037 | ID=MS.gene04403.t1;Parent=MS.gene04403 |
| chr3.4 | exon | 57411037 | 57412188 | 57411037 | ID=MS.gene04403.t1.exon1;Parent=MS.gene04403.t1 |
| chr3.4 | CDS | 57411037 | 57412188 | 57411037 | ID=cds.MS.gene04403.t1;Parent=MS.gene04403.t1 |
| Gene Sequence |
| Protein sequence |
