AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044057

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044057.t1 MTR_1g019240 94.059 202 10 2 11 211 67 267 6.62e-135 379
MS.gene044057.t1 MTR_1g019890 86.207 116 14 2 90 204 1 115 2.24e-65 198
MS.gene044057.t1 MTR_5g017040 75.556 90 17 2 38 125 114 200 1.78e-34 125
MS.gene044057.t1 MTR_7g099540 63.736 91 22 1 29 119 252 331 3.64e-29 113
MS.gene044057.t1 MTR_7g099540 62.637 91 29 1 29 119 252 337 4.42e-29 113
MS.gene044057.t1 MTR_1g084980 61.538 91 35 0 29 119 462 552 2.00e-28 112
MS.gene044057.t1 MTR_1g069155 62.637 91 23 1 29 119 317 396 2.39e-28 111
MS.gene044057.t1 MTR_3g449770 66.234 77 24 1 30 106 310 384 3.56e-26 105
MS.gene044057.t1 MTR_7g111320 56.667 90 35 1 29 114 432 521 2.20e-22 94.7
MS.gene044057.t1 MTR_7g110810 67.213 61 19 1 32 91 204 264 1.42e-19 85.9
MS.gene044057.t1 MTR_4g131160 50.602 83 38 2 17 96 182 264 1.05e-18 83.6
MS.gene044057.t1 MTR_4g131160 50.602 83 38 2 17 96 185 267 1.14e-18 83.6
MS.gene044057.t1 MTR_1g080890 46.835 79 36 1 19 91 177 255 3.39e-17 79.0
MS.gene044057.t1 MTR_5g005110 40.449 89 53 0 18 106 213 301 1.05e-15 74.7
MS.gene044057.t1 MTR_3g103030 41.892 74 43 0 33 106 233 306 4.90e-14 69.7
MS.gene044057.t1 MTR_1g106470 36.709 79 50 0 28 106 195 273 1.69e-13 68.2
MS.gene044057.t1 MTR_8g065740 43.210 81 40 2 20 94 291 371 7.07e-13 67.0
MS.gene044057.t1 MTR_7g053410 39.560 91 47 2 12 94 293 383 7.46e-13 67.0
MS.gene044057.t1 MTR_7g053410 39.560 91 47 2 12 94 293 383 7.65e-13 67.0
MS.gene044057.t1 MTR_3g116770 38.043 92 51 2 9 94 166 257 8.51e-13 66.6
MS.gene044057.t1 MTR_3g116770 38.043 92 51 2 9 94 166 257 8.60e-13 66.6
MS.gene044057.t1 MTR_1g106460 43.548 62 35 0 45 106 254 315 9.57e-13 66.2
MS.gene044057.t1 MTR_1g106480 54.348 46 21 0 46 91 86 131 2.96e-12 62.4
MS.gene044057.t1 MTR_4g070320 41.176 85 48 2 11 94 126 209 3.08e-12 64.7
MS.gene044057.t1 MTR_8g012290 47.692 65 33 1 31 94 293 357 3.46e-12 65.1
MS.gene044057.t1 MTR_8g012290 47.692 65 33 1 31 94 293 357 3.56e-12 65.1
MS.gene044057.t1 MTR_1g084980 72.500 40 11 0 29 68 462 501 3.74e-12 65.1
MS.gene044057.t1 MTR_1g018090 36.842 76 48 0 28 103 273 348 5.08e-12 64.3
MS.gene044057.t1 MTR_1g017350 46.154 65 34 1 31 94 262 326 5.27e-12 64.3
MS.gene044057.t1 MTR_1g017350 46.154 65 34 1 31 94 262 326 5.60e-12 64.3
MS.gene044057.t1 MTR_8g062240 44.615 65 35 1 31 94 153 217 5.65e-12 63.5
MS.gene044057.t1 MTR_1g017350 46.154 65 34 1 31 94 262 326 5.97e-12 64.3
MS.gene044057.t1 MTR_1g017350 46.154 65 34 1 31 94 262 326 6.06e-12 64.3
MS.gene044057.t1 MTR_5g037250 37.895 95 47 3 12 94 84 178 1.91e-11 61.6
MS.gene044057.t1 MTR_1g072320 51.786 56 27 0 40 95 471 526 1.92e-11 63.2
MS.gene044057.t1 MTR_1g070870 41.489 94 48 2 10 96 98 191 1.92e-11 62.4
MS.gene044057.t1 MTR_3g498825 45.205 73 38 2 31 102 149 220 2.13e-11 62.4
MS.gene044057.t1 MTR_5g048860 40.741 81 42 2 20 94 351 431 2.15e-11 62.8
MS.gene044057.t1 MTR_1g070870 42.697 89 44 2 15 96 100 188 2.35e-11 62.0
MS.gene044057.t1 MTR_5g079500 33.010 103 59 2 15 112 199 296 7.42e-11 60.8
MS.gene044057.t1 MTR_8g098275 48.077 52 27 0 40 91 309 360 8.41e-11 60.8
MS.gene044057.t1 MTR_8g098275 48.077 52 27 0 40 91 402 453 8.63e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044057.t1 AT4G36930 84.722 72 11 0 35 106 197 268 2.28e-35 128
MS.gene044057.t1 AT5G67110 75.000 84 21 0 28 111 86 169 1.43e-34 122
MS.gene044057.t1 AT1G09530 62.105 95 26 2 22 114 328 414 7.59e-29 112
MS.gene044057.t1 AT1G09530 62.105 95 26 2 22 114 328 414 7.59e-29 112
MS.gene044057.t1 AT1G09530 62.105 95 26 2 22 114 328 414 7.59e-29 112
MS.gene044057.t1 AT1G09530 62.105 95 26 2 22 114 328 414 7.59e-29 112
MS.gene044057.t1 AT1G09530 62.105 95 26 2 22 114 328 414 7.59e-29 112
MS.gene044057.t1 AT1G09530 62.105 95 26 2 22 114 328 414 7.59e-29 112
MS.gene044057.t1 AT2G20180 73.016 63 17 0 29 91 207 269 5.86e-26 103
MS.gene044057.t1 AT2G20180 73.016 63 17 0 29 91 207 269 5.86e-26 103
MS.gene044057.t1 AT2G20180 73.016 63 17 0 29 91 207 269 5.86e-26 103
MS.gene044057.t1 AT2G20180 73.016 63 17 0 29 91 278 340 1.45e-25 103
MS.gene044057.t1 AT2G20180 73.016 63 17 0 29 91 278 340 1.45e-25 103
MS.gene044057.t1 AT2G20180 73.016 63 17 0 29 91 278 340 1.45e-25 103
MS.gene044057.t1 AT2G20180 73.016 63 17 0 29 91 278 340 1.45e-25 103
MS.gene044057.t1 AT2G20180 72.581 62 17 0 29 90 278 339 4.38e-25 100
MS.gene044057.t1 AT4G00050 65.714 70 24 0 22 91 98 167 4.13e-24 97.1
MS.gene044057.t1 AT4G00050 70.968 62 18 0 30 91 208 269 7.97e-24 97.8
MS.gene044057.t1 AT4G00050 70.968 62 18 0 30 91 208 269 9.09e-24 97.8
MS.gene044057.t1 AT4G28800 55.556 81 35 1 29 109 249 328 1.29e-21 92.0
MS.gene044057.t1 AT2G46970 33.846 195 94 6 12 178 175 362 2.03e-21 91.3
MS.gene044057.t1 AT2G46970 33.846 195 94 6 12 178 184 371 2.14e-21 91.3
MS.gene044057.t1 AT2G46970 33.846 195 94 6 12 178 206 393 3.00e-21 90.9
MS.gene044057.t1 AT4G28800 64.062 64 23 0 29 92 261 324 6.46e-21 90.1
MS.gene044057.t1 AT4G28815 59.375 64 26 0 29 92 68 131 9.85e-21 87.0
MS.gene044057.t1 AT3G59060 54.651 86 36 1 29 114 250 332 2.28e-20 88.6
MS.gene044057.t1 AT3G59060 54.651 86 36 1 29 114 250 332 2.43e-20 88.6
MS.gene044057.t1 AT3G59060 54.651 86 36 1 29 114 250 332 2.43e-20 88.6
MS.gene044057.t1 AT3G59060 54.651 86 36 1 29 114 250 332 2.43e-20 88.6
MS.gene044057.t1 AT4G28790 55.696 79 33 1 29 107 271 347 2.75e-20 88.2
MS.gene044057.t1 AT2G24260 55.556 72 28 1 24 91 26 97 3.50e-20 85.9
MS.gene044057.t1 AT4G28815 59.375 64 26 0 29 92 144 207 3.67e-20 86.7
MS.gene044057.t1 AT2G43010 58.824 85 30 1 30 114 252 331 7.15e-20 87.0
MS.gene044057.t1 AT2G43010 58.824 85 30 1 30 114 252 331 7.27e-20 87.0
MS.gene044057.t1 AT2G43010 58.824 85 30 1 30 114 252 331 7.35e-20 87.0
MS.gene044057.t1 AT4G28790 62.121 66 25 0 29 94 271 336 7.36e-20 86.3
MS.gene044057.t1 AT2G43010 58.824 85 30 1 30 114 259 338 8.94e-20 87.0
MS.gene044057.t1 AT2G43010 58.824 85 30 1 30 114 294 373 1.06e-19 87.0
MS.gene044057.t1 AT2G24260 55.556 72 28 1 24 91 129 200 1.43e-19 85.5
MS.gene044057.t1 AT5G58010 47.778 90 40 2 27 109 97 186 1.78e-19 84.7
MS.gene044057.t1 AT4G30980 53.521 71 32 1 27 96 128 198 6.16e-19 83.6
MS.gene044057.t1 AT4G30980 53.521 71 32 1 27 96 176 246 2.09e-18 82.4
MS.gene044057.t1 AT3G62090 54.545 66 30 0 32 97 168 233 3.64e-16 76.3
MS.gene044057.t1 AT3G62090 54.545 66 30 0 32 97 185 250 4.07e-16 76.3
MS.gene044057.t1 AT4G33880 36.190 105 60 1 9 106 239 343 5.77e-16 75.5
MS.gene044057.t1 AT5G61270 47.619 84 42 1 11 94 56 137 7.69e-16 74.3
MS.gene044057.t1 AT5G61270 47.619 84 42 1 11 94 56 137 7.69e-16 74.3
MS.gene044057.t1 AT5G61270 47.619 84 42 1 11 94 144 225 1.31e-15 74.7
MS.gene044057.t1 AT5G67110 54.545 77 13 1 28 104 86 140 2.18e-15 71.6
MS.gene044057.t1 AT1G27740 36.842 95 56 1 12 106 154 244 8.97e-15 71.2
MS.gene044057.t1 AT4G28811 63.492 63 23 0 29 91 351 413 1.84e-14 71.6
MS.gene044057.t1 AT2G14760 36.559 93 58 1 15 106 235 327 2.85e-13 67.8
MS.gene044057.t1 AT5G50915 43.590 78 40 2 21 94 125 202 3.35e-13 67.0
MS.gene044057.t1 AT5G50915 43.590 78 40 2 21 94 125 202 3.35e-13 67.0
MS.gene044057.t1 AT2G14760 36.709 79 50 0 28 106 236 314 3.48e-13 67.4
MS.gene044057.t1 AT5G67110 62.745 51 19 0 28 78 86 136 3.87e-13 64.7
MS.gene044057.t1 AT5G50915 43.038 79 41 2 20 94 124 202 4.09e-13 67.0
MS.gene044057.t1 AT5G50915 43.038 79 41 2 20 94 124 202 4.09e-13 67.0
MS.gene044057.t1 AT5G43175 35.443 79 51 0 28 106 131 209 1.13e-12 65.1
MS.gene044057.t1 AT3G07340 47.692 65 33 1 31 94 260 324 1.51e-12 66.2
MS.gene044057.t1 AT3G07340 47.692 65 33 1 31 94 260 324 1.67e-12 65.9
MS.gene044057.t1 AT5G48560 47.692 65 33 1 31 94 303 367 1.77e-12 65.9
MS.gene044057.t1 AT5G48560 43.038 79 40 2 21 94 289 367 1.89e-12 65.9
MS.gene044057.t1 AT5G62610 39.362 94 50 3 31 121 155 244 1.92e-12 65.1
MS.gene044057.t1 AT5G62610 39.362 94 50 3 31 121 155 244 1.92e-12 65.1
MS.gene044057.t1 AT4G36540 46.154 65 34 1 31 94 143 207 2.65e-12 64.7
MS.gene044057.t1 AT1G68920 47.692 65 33 1 31 94 304 368 2.65e-12 65.5
MS.gene044057.t1 AT1G68920 47.692 65 33 1 31 94 305 369 2.76e-12 65.5
MS.gene044057.t1 AT1G68920 47.692 65 33 1 31 94 305 369 2.76e-12 65.5
MS.gene044057.t1 AT1G68920 47.692 65 33 1 31 94 305 369 2.76e-12 65.5
MS.gene044057.t1 AT4G36540 46.154 65 34 1 31 94 143 207 2.82e-12 64.7
MS.gene044057.t1 AT1G73830 44.615 65 35 1 31 94 149 213 6.32e-12 63.5
MS.gene044057.t1 AT2G18300 46.154 65 34 1 31 94 187 251 6.60e-12 63.9
MS.gene044057.t1 AT2G18300 46.154 65 34 1 31 94 187 251 6.65e-12 63.9
MS.gene044057.t1 AT1G73830 44.615 65 35 1 31 94 149 213 6.97e-12 63.2
MS.gene044057.t1 AT2G18300 46.154 65 34 1 31 94 187 251 7.19e-12 63.9
MS.gene044057.t1 AT3G23690 44.615 65 35 1 31 94 193 257 8.52e-12 63.9
MS.gene044057.t1 AT1G10120 39.785 93 47 3 11 94 180 272 9.08e-12 63.5
MS.gene044057.t1 AT1G10120 39.785 93 47 3 11 94 180 272 9.08e-12 63.5
MS.gene044057.t1 AT4G34530 43.077 65 36 1 31 94 174 238 9.59e-12 63.5
MS.gene044057.t1 AT1G02340 40.964 83 38 1 9 91 119 190 1.00e-11 63.2
MS.gene044057.t1 AT1G02340 40.964 83 38 1 9 91 112 183 1.06e-11 63.2
MS.gene044057.t1 AT1G59640 44.615 65 35 1 31 94 138 202 1.06e-11 62.8
MS.gene044057.t1 AT1G26260 44.615 65 35 1 31 94 203 267 1.27e-11 63.2
MS.gene044057.t1 AT1G26260 44.615 65 35 1 31 94 225 289 1.27e-11 63.2
MS.gene044057.t1 AT1G26260 44.615 65 35 1 31 94 225 289 1.27e-11 63.2
MS.gene044057.t1 AT1G26260 44.615 65 35 1 31 94 225 289 1.27e-11 63.2
MS.gene044057.t1 AT1G26260 44.615 65 35 1 31 94 225 289 1.27e-11 63.2
MS.gene044057.t1 AT1G59640 46.774 62 32 1 31 91 138 199 1.56e-11 62.8
MS.gene044057.t1 AT1G26260 44.615 65 35 1 31 94 174 238 1.60e-11 62.8
MS.gene044057.t1 AT1G63650 53.846 52 24 0 40 91 406 457 2.77e-11 62.4
MS.gene044057.t1 AT1G63650 53.846 52 24 0 40 91 406 457 2.77e-11 62.4
MS.gene044057.t1 AT1G63650 53.846 52 24 0 40 91 406 457 2.77e-11 62.4
MS.gene044057.t1 AT1G18400 43.077 65 36 1 31 94 147 211 3.03e-11 61.2
MS.gene044057.t1 AT1G18400 43.077 65 36 1 31 94 147 211 3.05e-11 61.6
MS.gene044057.t1 AT1G03040 42.045 88 41 2 19 96 125 212 3.41e-11 61.6
MS.gene044057.t1 AT1G03040 42.045 88 41 2 19 96 120 207 3.48e-11 61.6
MS.gene044057.t1 AT1G25330 44.615 65 35 1 31 94 106 170 4.06e-11 60.8
MS.gene044057.t1 AT1G03040 42.045 88 41 2 19 96 125 212 4.13e-11 61.6
MS.gene044057.t1 AT1G66470 43.056 72 36 1 20 91 191 257 5.73e-11 60.8
MS.gene044057.t1 AT2G22770 53.846 52 24 0 40 91 133 184 8.31e-11 60.8

Find 41 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATCACCTTGTTAGAATT+TGG 0.111527 1.2:+4274764 None:intergenic
CAACATGCCACAACTGATTA+TGG 0.244370 1.2:-4273523 MS.gene044057:CDS
ATTAATTCTGCAGATGTTAA+TGG 0.295896 1.2:-4273926 MS.gene044057:intron
TTTGACATGCTGCATTGTTC+TGG 0.325901 1.2:+4273727 None:intergenic
GTTCCATAATTTGTCTGAAA+AGG 0.391347 1.2:-4274927 MS.gene044057:intron
TTGCATCCAATGTCGTTATC+AGG 0.395094 1.2:-4273886 MS.gene044057:CDS
GCGAAATATTCATTGTTAGC+AGG 0.465887 1.2:+4273769 None:intergenic
AAGCTGCTTTAAATATTCAA+TGG 0.465998 1.2:+4274585 None:intergenic
AATCTTGATGAGGGTAATAG+TGG 0.470391 1.2:-4273823 MS.gene044057:CDS
GGTGGGGCAGCCTTTGATGA+TGG 0.476408 1.2:+4274986 None:intergenic
TCAAACATGAACCTTAATAG+AGG 0.484571 1.2:+4273639 None:intergenic
TTTGAAGAAGAACGTGGTGG+TGG 0.492656 1.2:+4274968 None:intergenic
ATTATGGATACAACAAGGAT+TGG 0.493878 1.2:-4273507 MS.gene044057:CDS
AATATTCATTGTTAGCAGGC+GGG 0.525894 1.2:+4273773 None:intergenic
TTGAAGAAGAACGTGGTGGT+GGG 0.545725 1.2:+4274969 None:intergenic
ATATTCATTGTTAGCAGGCG+GGG 0.547212 1.2:+4273774 None:intergenic
TTCAGAGTTGCCATCATCAA+AGG 0.550812 1.2:-4274996 MS.gene044057:CDS
AATGAATGGAACAGAGAAGG+AGG 0.550832 1.2:-4274829 MS.gene044057:intron
CAGATGTTAATGGTGAGAAA+TGG 0.552941 1.2:-4273916 MS.gene044057:CDS
GTTTATGACACATCAGAAGA+AGG 0.583034 1.2:+4273477 None:intergenic
TGAAGAAGAACGTGGTGGTG+GGG 0.583658 1.2:+4274970 None:intergenic
TGAGTTGTTCAATCTTGATG+AGG 0.583812 1.2:-4273833 MS.gene044057:CDS
AAATATTCATTGTTAGCAGG+CGG 0.584130 1.2:+4273772 None:intergenic
TCAATCTGTAATCATACCCT+CGG 0.590382 1.2:-4273704 MS.gene044057:CDS
TCAGTTGTGGCATGTTGTTG+TGG 0.593873 1.2:+4273529 None:intergenic
TTTAATTCCAAATTCTAACA+AGG 0.599565 1.2:-4274771 MS.gene044057:intron
GAGTTGTTCAATCTTGATGA+GGG 0.608970 1.2:-4273832 MS.gene044057:CDS
TAAAGCTTCAATGTTAGATG+AGG 0.610444 1.2:-4274608 MS.gene044057:CDS
AGAGGTTTGAAAACTTGATG+AGG 0.611385 1.2:+4273657 None:intergenic
TGAAGCTAAATTTGTCGCCG+AGG 0.617569 1.2:+4273687 None:intergenic
GATCCTCCTGATAACGACAT+TGG 0.621566 1.2:+4273880 None:intergenic
GTTGTATCCATAATCAGTTG+TGG 0.626275 1.2:+4273516 None:intergenic
CTTCTCTTTGAAGAAGAACG+TGG 0.628949 1.2:+4274962 None:intergenic
AGATTGAACAACTCAGTCTG+AGG 0.648355 1.2:+4273841 None:intergenic
CTCTTTGAAGAAGAACGTGG+TGG 0.649691 1.2:+4274965 None:intergenic
GAAGCTAAATTTGTCGCCGA+GGG 0.651831 1.2:+4273688 None:intergenic
TCAGTCTGAGGAAACATCGT+AGG 0.657116 1.2:+4273853 None:intergenic
CTAACAATGAATATTTCGCA+CGG 0.657592 1.2:-4273765 MS.gene044057:CDS
CATCCAATGTCGTTATCAGG+AGG 0.666461 1.2:-4273883 MS.gene044057:CDS
TGTCGTTATCAGGAGGATCG+CGG 0.666590 1.2:-4273876 MS.gene044057:CDS
AACTGATTATGGATACAACA+AGG 0.695121 1.2:-4273512 MS.gene044057:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTAAATACTATTATGAA+TGG - chr1.2:4274015-4274034 MS.gene044057:intron 15.0%
!! ATTAAAATTCAAAATCAGAA+AGG + chr1.2:4273673-4273692 None:intergenic 15.0%
!! TATCTTATGTACATATTATA+AGG + chr1.2:4274196-4274215 None:intergenic 15.0%
!!! AAAAAGAATCTTTCTTTTTA+AGG + chr1.2:4273638-4273657 None:intergenic 15.0%
!!! AAAAGAATCTTTCTTTTTAA+GGG + chr1.2:4273637-4273656 None:intergenic 15.0%
!!! AAGATATTTTCAACTTATTT+TGG - chr1.2:4274210-4274229 MS.gene044057:intron 15.0%
!!! TGATTTTGAATTTTAATGAA+TGG - chr1.2:4273676-4273695 MS.gene044057:CDS 15.0%
!! ACTTATAGCTTATATGAAAA+CGG - chr1.2:4274262-4274281 MS.gene044057:intron 20.0%
!! TTTAATTCCAAATTCTAACA+AGG - chr1.2:4273748-4273767 MS.gene044057:CDS 20.0%
!!! TATTTTTCTTCTTATTCTTG+TGG - chr1.2:4273846-4273865 MS.gene044057:CDS 20.0%
! AATTTATCCAAAGTGACTAT+AGG - chr1.2:4274527-4274546 MS.gene044057:intron 25.0%
! ACTTATTTACGCTTATTTAC+TGG - chr1.2:4274124-4274143 MS.gene044057:intron 25.0%
! ATTAATTCTGCAGATGTTAA+TGG - chr1.2:4274593-4274612 MS.gene044057:CDS 25.0%
!! AAGCTGCTTTAAATATTCAA+TGG + chr1.2:4273937-4273956 None:intergenic 25.0%
!! AAGTTTTCAAACCTCTATTA+AGG - chr1.2:4274869-4274888 MS.gene044057:intron 25.0%
!!! TTTTGTTTGAAGAATGATGA+AGG - chr1.2:4273500-4273519 MS.gene044057:CDS 25.0%
AAATATTCATTGTTAGCAGG+CGG + chr1.2:4274750-4274769 None:intergenic 30.0%
AACTGATTATGGATACAACA+AGG - chr1.2:4275007-4275026 MS.gene044057:CDS 30.0%
AAGTAACAATTAGTCCATGA+TGG + chr1.2:4274562-4274581 None:intergenic 30.0%
ATTATGGATACAACAAGGAT+TGG - chr1.2:4275012-4275031 MS.gene044057:CDS 30.0%
CTAACAATGAATATTTCGCA+CGG - chr1.2:4274754-4274773 MS.gene044057:intron 30.0%
TAAAGCTTCAATGTTAGATG+AGG - chr1.2:4273911-4273930 MS.gene044057:CDS 30.0%
TAAGCGTAAATAAGTCAATC+CGG + chr1.2:4274119-4274138 None:intergenic 30.0%
TACATCACCTTGTTAGAATT+TGG + chr1.2:4273758-4273777 None:intergenic 30.0%
TCAAACATGAACCTTAATAG+AGG + chr1.2:4274883-4274902 None:intergenic 30.0%
TTGACAATTTGACATGGTTA+AGG + chr1.2:4274063-4274082 None:intergenic 30.0%
TTTAATGAATGGAACAGAGA+AGG - chr1.2:4273687-4273706 MS.gene044057:CDS 30.0%
! AGTGTTGTTGATGAAACAAA+AGG - chr1.2:4274082-4274101 MS.gene044057:intron 30.0%
! ATTAGTCCATGATGGAATAA+TGG + chr1.2:4274554-4274573 None:intergenic 30.0%
! GAACCTTTTCAGACAAATTA+TGG + chr1.2:4273598-4273617 None:intergenic 30.0%
! GTTCCATAATTTGTCTGAAA+AGG - chr1.2:4273592-4273611 MS.gene044057:intron 30.0%
!! AACTCTTATTTCTGATGTGA+AGG - chr1.2:4274957-4274976 MS.gene044057:CDS 30.0%
AATATTCATTGTTAGCAGGC+GGG + chr1.2:4274749-4274768 None:intergenic 35.0%
AATCTTGATGAGGGTAATAG+TGG - chr1.2:4274696-4274715 MS.gene044057:intron 35.0%
AGAGGTTTGAAAACTTGATG+AGG + chr1.2:4274865-4274884 None:intergenic 35.0%
ATAGGTCCATTATTCCATCA+TGG - chr1.2:4274545-4274564 MS.gene044057:intron 35.0%
CAACACTTGACAATTTGACA+TGG + chr1.2:4274069-4274088 None:intergenic 35.0%
CAGATGTTAATGGTGAGAAA+TGG - chr1.2:4274603-4274622 MS.gene044057:CDS 35.0%
GAGTTGTTCAATCTTGATGA+GGG - chr1.2:4274687-4274706 MS.gene044057:intron 35.0%
GATGATCCAAATTGAGTCAT+AGG + chr1.2:4274407-4274426 None:intergenic 35.0%
GCGAAATATTCATTGTTAGC+AGG + chr1.2:4274753-4274772 None:intergenic 35.0%
GTTGTATCCATAATCAGTTG+TGG + chr1.2:4275006-4275025 None:intergenic 35.0%
TCAATCTGTAATCATACCCT+CGG - chr1.2:4274815-4274834 MS.gene044057:CDS 35.0%
TGAGTTGTTCAATCTTGATG+AGG - chr1.2:4274686-4274705 MS.gene044057:intron 35.0%
! GTTGATGAAACAAAAGGCTA+AGG - chr1.2:4274088-4274107 MS.gene044057:intron 35.0%
! TAATGGACCTATAGTCACTT+TGG + chr1.2:4274537-4274556 None:intergenic 35.0%
!!! CTTATTTTGGTAAGCTCTTC+AGG - chr1.2:4274223-4274242 MS.gene044057:intron 35.0%
AATGAATGGAACAGAGAAGG+AGG - chr1.2:4273690-4273709 MS.gene044057:CDS 40.0%
ACAAAAGGCTAAGGTTTGTC+CGG - chr1.2:4274097-4274116 MS.gene044057:intron 40.0%
ACTGGACCTATGACTCAATT+TGG - chr1.2:4274398-4274417 MS.gene044057:intron 40.0%
AGATTGAACAACTCAGTCTG+AGG + chr1.2:4274681-4274700 None:intergenic 40.0%
ATATTCATTGTTAGCAGGCG+GGG + chr1.2:4274748-4274767 None:intergenic 40.0%
ATTGAGTCATAGGTCCAGTT+TGG + chr1.2:4274397-4274416 None:intergenic 40.0%
CAACATGCCACAACTGATTA+TGG - chr1.2:4274996-4275015 MS.gene044057:CDS 40.0%
CTGAGCTTCACAATTAGCTA+AGG - chr1.2:4274437-4274456 MS.gene044057:intron 40.0%
TTCAGAGTTGCCATCATCAA+AGG - chr1.2:4273523-4273542 MS.gene044057:CDS 40.0%
TTGCATCCAATGTCGTTATC+AGG - chr1.2:4274633-4274652 MS.gene044057:intron 40.0%
TTTGACATGCTGCATTGTTC+TGG + chr1.2:4274795-4274814 None:intergenic 40.0%
! CTTCTCTTTGAAGAAGAACG+TGG + chr1.2:4273560-4273579 None:intergenic 40.0%
CATAGGTCCAGTTTGGACTT+CGG + chr1.2:4274390-4274409 None:intergenic 45.0%
CATCCAATGTCGTTATCAGG+AGG - chr1.2:4274636-4274655 MS.gene044057:intron 45.0%
CGTTTATCCGAAGTCCAAAC+TGG - chr1.2:4274380-4274399 MS.gene044057:intron 45.0%
GAAGCTAAATTTGTCGCCGA+GGG + chr1.2:4274834-4274853 None:intergenic 45.0%
TCAGTCTGAGGAAACATCGT+AGG + chr1.2:4274669-4274688 None:intergenic 45.0%
TCAGTTGTGGCATGTTGTTG+TGG + chr1.2:4274993-4275012 None:intergenic 45.0%
TGAAGCTAAATTTGTCGCCG+AGG + chr1.2:4274835-4274854 None:intergenic 45.0%
TTGAAGAAGAACGTGGTGGT+GGG + chr1.2:4273553-4273572 None:intergenic 45.0%
TTTGAAGAAGAACGTGGTGG+TGG + chr1.2:4273554-4273573 None:intergenic 45.0%
! CTCTTTGAAGAAGAACGTGG+TGG + chr1.2:4273557-4273576 None:intergenic 45.0%
! GATCCTCCTGATAACGACAT+TGG + chr1.2:4274642-4274661 None:intergenic 45.0%
TGTCGTTATCAGGAGGATCG+CGG - chr1.2:4274643-4274662 MS.gene044057:intron 50.0%
! TGAAGAAGAACGTGGTGGTG+GGG + chr1.2:4273552-4273571 None:intergenic 50.0%
GGTGGGGCAGCCTTTGATGA+TGG + chr1.2:4273536-4273555 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 4273479 4275062 4273479 ID=MS.gene044057
chr1.2 mRNA 4273479 4275062 4273479 ID=MS.gene044057.t1;Parent=MS.gene044057
chr1.2 exon 4274928 4275062 4274928 ID=MS.gene044057.t1.exon1;Parent=MS.gene044057.t1
chr1.2 CDS 4274928 4275062 4274928 ID=cds.MS.gene044057.t1;Parent=MS.gene044057.t1
chr1.2 exon 4274772 4274837 4274772 ID=MS.gene044057.t1.exon2;Parent=MS.gene044057.t1
chr1.2 CDS 4274772 4274837 4274772 ID=cds.MS.gene044057.t1;Parent=MS.gene044057.t1
chr1.2 exon 4274570 4274635 4274570 ID=MS.gene044057.t1.exon3;Parent=MS.gene044057.t1
chr1.2 CDS 4274570 4274635 4274570 ID=cds.MS.gene044057.t1;Parent=MS.gene044057.t1
chr1.2 exon 4273651 4273935 4273651 ID=MS.gene044057.t1.exon4;Parent=MS.gene044057.t1
chr1.2 CDS 4273651 4273935 4273651 ID=cds.MS.gene044057.t1;Parent=MS.gene044057.t1
chr1.2 exon 4273479 4273562 4273479 ID=MS.gene044057.t1.exon5;Parent=MS.gene044057.t1
chr1.2 CDS 4273479 4273562 4273479 ID=cds.MS.gene044057.t1;Parent=MS.gene044057.t1
Gene Sequence

>MS.gene044057

ATGACTTTTTTTATTCTTTTTTTTTGTTTGAAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGGTTCAATTCAATATTTTTTACCCTTAAAAAGAAAGATTCTTTTTTACTTTTTTTTGCCTTTCTGATTTTGAATTTTAATGAATGGAACAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGGTGATGTATTTATGTAAATTTTCTAGCATCTTATCTCTTTTTATACTTTATTTTAATTTATCTTACAAAATATTATTATTTTTCTTCTTATTCTTGTGGATGAGTGAGTAATTTTGTGTTTGTTTATTTTTAATAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAGTGAGTTTTCTTTCACTTAAGATGAACAATGAAACTCTAAAACATGTTAAATACTATTATGAATGGTTTTTTTGTGCAATACATTTGTCCTTAACCATGTCAAATTGTCAAGTGTTGTTGATGAAACAAAAGGCTAAGGTTTGTCCGGATTGACTTATTTACGCTTATTTACTGGTATAAGCACTTGTGAGCGTGTTTCAGAGAGCTTATAGTTAGAAACACCTTATAATATGTACATAAGATATTTTCAACTTATTTTGGTAAGCTCTTCAGGCTAGCTTAAGAAAACAACTTATAGCTTATATGAAAACGGTTTAAATTTATATCATCTTTTGTTATAGAAACAGTTTATATGTGAACACTTATATGTAAGTGTTTATGCATAATCGCATAAACACTTAATCAAATCGTTTATCCGAAGTCCAAACTGGACCTATGACTCAATTTGGATCATCTTCTAGCTTACTGAGCTTCACAATTAGCTAAGGAAGAAATTAAATAAAAGAACTTCTTGACTCTTTAAATATTTATTTTCTCTGTGAATGTTTCTTGAAAAATTTATCCAAAGTGACTATAGGTCCATTATTCCATCATGGACTAATTGTTACTTTAGTGTTTGTGATTAATTCTGCAGATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCAATGTCGTTATCAGGAGGATCGCGGCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAGTTCTAACAATGCAATTACCCCGCCTGCTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATGTCAAATCAATCTGTAATCATACCCTCGGCGACAAATTTAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGTTCATGTTTGATACAAAATAATTTTAATGAACAGTTACTTCATTTATTTGTTTATTGAACTTAACAACTCTTATTTCTGATGTGAAGGATGTTTTCAGCCACAACAACATGCCACAACTGATTATGGATACAACAAGGATTGGAAAAACTCCTTCTTCTGATGTGTCATAA
Protein sequence

>MS.gene044057.t1

MTFFILFFCLKNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHSSNNAITPPANNEYFARQAFSFPEQCSMSNQSVIIPSATNLASFDTSSSFQTSIKDVFSHNNMPQLIMDTTRIGKTPSSDVS