AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044059

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044059.t1 MTR_6g477900 31.481 162 92 7 4 154 6 159 2.99e-16 73.9
MS.gene044059.t1 MTR_3g096920 32.847 137 76 5 4 134 7 133 6.69e-15 70.9
MS.gene044059.t1 MTR_3g096920 32.847 137 76 5 4 134 7 133 8.86e-15 70.9
MS.gene044059.t1 MTR_8g094580 34.307 137 74 6 4 134 7 133 9.69e-15 70.5
MS.gene044059.t1 MTR_2g093810 32.867 143 83 4 4 140 14 149 1.17e-14 70.5
MS.gene044059.t1 MTR_2g086880 30.556 144 78 7 6 139 20 151 3.37e-14 69.7
MS.gene044059.t1 MTR_2g086880 30.714 140 75 7 6 135 20 147 5.32e-14 69.3
MS.gene044059.t1 MTR_1g008740 31.429 140 84 5 2 135 25 158 5.44e-14 68.9
MS.gene044059.t1 MTR_1g008740 31.429 140 84 5 2 135 11 144 6.34e-14 68.6
MS.gene044059.t1 MTR_7g100990 34.783 138 71 5 4 132 11 138 6.49e-14 68.6
MS.gene044059.t1 MTR_5g041940 34.043 141 71 7 1 132 1 128 7.05e-14 67.8
MS.gene044059.t1 MTR_2g080010 33.803 142 78 6 4 137 15 148 1.09e-13 68.2
MS.gene044059.t1 MTR_8g467490 32.117 137 80 4 2 132 12 141 1.56e-13 67.8
MS.gene044059.t1 MTR_8g093790 28.916 166 98 6 4 168 10 156 2.15e-13 65.5
MS.gene044059.t1 MTR_4g094302 28.682 129 83 4 4 132 11 130 3.60e-13 64.3
MS.gene044059.t1 MTR_4g098630 33.333 141 76 7 4 134 6 138 3.77e-13 66.2
MS.gene044059.t1 MTR_4g094302 28.682 129 83 4 4 132 11 130 4.71e-13 64.7
MS.gene044059.t1 MTR_2g064090 28.916 166 96 8 4 156 6 162 5.67e-13 65.9
MS.gene044059.t1 MTR_4g134460 36.090 133 71 6 6 132 56 180 6.05e-13 66.2
MS.gene044059.t1 MTR_6g011860 31.579 133 77 5 6 132 17 141 2.85e-12 64.3
MS.gene044059.t1 MTR_1g069805 29.221 154 94 6 4 150 10 155 3.11e-12 63.5
MS.gene044059.t1 MTR_1g097300 33.333 135 73 6 6 132 21 146 3.45e-12 63.9
MS.gene044059.t1 MTR_6g084430 29.341 167 99 8 2 158 3 160 3.72e-12 63.5
MS.gene044059.t1 MTR_2g079990 27.326 172 104 7 4 164 16 177 4.30e-12 63.5
MS.gene044059.t1 MTR_8g099750 30.405 148 82 6 4 142 14 149 5.06e-12 62.4
MS.gene044059.t1 MTR_3g116070 30.657 137 79 5 4 132 23 151 6.96e-12 62.8
MS.gene044059.t1 MTR_7g097090 29.870 154 93 6 4 150 10 155 8.04e-12 62.4
MS.gene044059.t1 MTR_8g023840 31.884 138 77 5 5 133 12 141 1.12e-11 62.4
MS.gene044059.t1 MTR_8g023900 29.213 178 102 7 4 166 188 356 1.47e-11 62.0
MS.gene044059.t1 MTR_8g023900 29.787 141 76 6 2 130 10 139 9.67e-11 59.7
MS.gene044059.t1 MTR_4g035590 30.719 153 91 7 5 149 9 154 2.33e-11 61.2
MS.gene044059.t1 MTR_3g096140 29.714 175 90 8 2 158 5 164 2.81e-11 60.8
MS.gene044059.t1 MTR_2g079990 32.353 136 75 6 4 132 16 141 3.45e-11 60.8
MS.gene044059.t1 MTR_1g090720 29.762 168 93 7 6 156 44 203 4.58e-11 60.8
MS.gene044059.t1 MTR_3g096140 31.176 170 90 8 2 156 5 162 4.80e-11 60.5
MS.gene044059.t1 MTR_4g075980 30.882 136 80 5 6 134 17 145 5.69e-11 60.1
MS.gene044059.t1 MTR_5g090970 31.126 151 89 6 2 145 16 158 6.14e-11 60.1
MS.gene044059.t1 MTR_8g059170 31.618 136 76 6 4 132 14 139 8.29e-11 59.7
MS.gene044059.t1 MTR_4g108760 26.404 178 110 6 4 169 17 185 8.74e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044059.t1 AT3G17730 30.303 165 96 7 4 157 6 162 3.87e-16 73.9
MS.gene044059.t1 AT3G10480 32.099 162 91 7 6 156 29 182 5.30e-16 75.1
MS.gene044059.t1 AT2G24430 33.333 159 86 7 2 149 14 163 7.77e-16 73.9
MS.gene044059.t1 AT2G24430 33.333 159 86 7 2 149 14 163 7.77e-16 73.9
MS.gene044059.t1 AT3G10480 31.288 163 92 7 6 156 29 183 5.44e-15 72.0
MS.gene044059.t1 AT3G10490 30.675 163 93 7 6 156 29 183 5.68e-15 70.5
MS.gene044059.t1 AT1G26870 35.115 131 72 4 6 130 18 141 6.68e-15 71.6
MS.gene044059.t1 AT1G77450 35.036 137 73 5 4 134 10 136 8.52e-15 70.5
MS.gene044059.t1 AT1G71930 31.387 137 82 4 4 134 9 139 1.65e-14 70.1
MS.gene044059.t1 AT1G71930 31.387 137 82 4 4 134 9 139 1.65e-14 70.1
MS.gene044059.t1 AT4G27410 29.651 172 94 8 4 158 14 175 1.88e-14 69.7
MS.gene044059.t1 AT3G10490 30.675 163 93 7 6 156 29 183 2.53e-14 70.1
MS.gene044059.t1 AT2G27300 28.676 136 87 4 6 137 16 145 3.05e-14 69.7
MS.gene044059.t1 AT5G64530 27.604 192 105 6 4 174 3 181 5.12e-14 67.0
MS.gene044059.t1 AT1G01720 35.036 137 73 6 4 134 7 133 6.27e-14 68.2
MS.gene044059.t1 AT1G54330 30.488 164 96 7 4 158 6 160 7.36e-14 68.2
MS.gene044059.t1 AT5G64530 32.061 131 76 4 4 134 3 120 1.17e-13 65.5
MS.gene044059.t1 AT5G46590 33.333 159 83 8 4 148 6 155 1.55e-13 67.4
MS.gene044059.t1 AT5G46590 34.286 140 74 7 4 134 6 136 2.45e-13 66.6
MS.gene044059.t1 AT3G44290 30.597 134 77 6 6 132 16 140 2.75e-13 65.9
MS.gene044059.t1 AT3G15500 28.070 171 104 7 4 164 14 175 3.52e-13 66.6
MS.gene044059.t1 AT5G39610 29.630 162 93 6 4 153 20 172 4.09e-13 65.9
MS.gene044059.t1 AT2G02450 33.553 152 85 7 6 149 53 196 4.27e-13 66.6
MS.gene044059.t1 AT3G44290 29.730 148 85 7 6 146 16 151 4.86e-13 66.2
MS.gene044059.t1 AT2G02450 34.211 152 84 7 6 149 53 196 5.31e-13 66.2
MS.gene044059.t1 AT5G66300 26.347 167 108 5 4 161 12 172 6.10e-13 65.5
MS.gene044059.t1 AT4G10350 32.903 155 88 7 5 149 10 158 8.12e-13 65.5
MS.gene044059.t1 AT1G52890 27.545 167 100 7 4 159 14 170 1.22e-12 65.1
MS.gene044059.t1 AT3G49530 25.904 166 103 7 1 154 10 167 1.72e-12 64.7
MS.gene044059.t1 AT3G49530 25.904 166 103 7 1 154 10 167 2.23e-12 64.7
MS.gene044059.t1 AT3G29035 30.864 162 91 7 4 153 24 176 3.14e-12 63.9
MS.gene044059.t1 AT5G61430 28.395 162 95 6 4 153 16 168 3.21e-12 63.9
MS.gene044059.t1 AT3G04060 27.513 189 110 8 4 174 20 199 4.73e-12 63.5
MS.gene044059.t1 AT5G07680 28.834 163 93 7 4 153 17 169 5.51e-12 63.2
MS.gene044059.t1 AT5G07680 28.834 163 93 7 4 153 3 155 6.64e-12 62.8
MS.gene044059.t1 AT5G18270 28.750 160 92 7 4 150 21 171 1.10e-11 62.4
MS.gene044059.t1 AT5G04395 29.605 152 86 6 4 138 28 175 1.25e-11 60.8
MS.gene044059.t1 AT5G18270 28.125 160 93 7 4 150 21 171 3.59e-11 60.8
MS.gene044059.t1 AT3G12910 30.435 138 75 6 6 132 23 150 6.56e-11 60.1
MS.gene044059.t1 AT1G33280 30.882 136 82 4 5 134 9 138 8.28e-11 59.7
MS.gene044059.t1 AT4G28530 26.506 166 99 4 4 150 10 171 9.38e-11 59.7

Find 37 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTAAGCATGCACTTC+TGG 0.248003 1.2:+4317672 MS.gene044059:CDS
CAATGGTTCTGAGCTAATTA+AGG 0.256935 1.2:+4316274 MS.gene044059:CDS
GGTACTGTAAGACAGGATTT+TGG 0.279481 1.2:+4316408 MS.gene044059:CDS
GGAGCTGATAACGTGGTTCT+AGG 0.360842 1.2:+4316464 MS.gene044059:CDS
GAAGAGATTCAGAATTTCAA+TGG 0.424440 1.2:+4316257 MS.gene044059:CDS
GGAGTAAGACGCAATTCAAA+TGG 0.431789 1.2:-4316320 None:intergenic
GCAATTCAAATGGGTCATAC+TGG 0.459319 1.2:-4316310 None:intergenic
CAGAGGAGGTACTGTAAGAC+AGG 0.478625 1.2:+4316401 MS.gene044059:CDS
CCTCCTCTGCTCATCAACTT+TGG 0.480636 1.2:-4316387 None:intergenic
GTGAAGCAATAAAATTCCCT+TGG 0.488088 1.2:-4316362 None:intergenic
CAAATGGGTCATACTGGTAC+AGG 0.492656 1.2:-4316304 None:intergenic
CCTTGGGTGACGGAAGGAAA+AGG 0.509656 1.2:-4316345 None:intergenic
GAAGGGACGAAGCCAACGCC+AGG 0.516186 1.2:-4316191 None:intergenic
GAATTGTTTCCACCTGGCGT+TGG 0.519445 1.2:+4316179 MS.gene044059:CDS
AGTGCATGCTTAAGCTGCTC+CGG 0.526169 1.2:-4317667 None:intergenic
AATAAAATTCCCTTGGGTGA+CGG 0.537471 1.2:-4316355 None:intergenic
CACTCTTGCTAACAAGCCTC+AGG 0.544263 1.2:+4316565 MS.gene044059:CDS
TGGACGCTGTCAAAACCAGC+TGG 0.550147 1.2:+4316528 MS.gene044059:CDS
TGAAGCAATAAAATTCCCTT+GGG 0.552712 1.2:-4316361 None:intergenic
CCACATGGAAGCTATGACAC+CGG 0.554580 1.2:+4317648 MS.gene044059:CDS
GAGTAAGACGCAATTCAAAT+GGG 0.556312 1.2:-4316319 None:intergenic
GCTGTTCGAGACATTACCGT+TGG 0.568138 1.2:+4316443 MS.gene044059:CDS
GCAATGGAATTGTTTCCACC+TGG 0.585685 1.2:+4316173 None:intergenic
AAATTCCCTTGGGTGACGGA+AGG 0.596649 1.2:-4316351 None:intergenic
GTACTCGTACATAGTCCAGC+TGG 0.603542 1.2:-4316543 None:intergenic
CTAACAAGGAGCTCATCAGA+AGG 0.607644 1.2:-4316209 None:intergenic
TAACAAGGAGCTCATCAGAA+GGG 0.608778 1.2:-4316208 None:intergenic
CCAAAGTTGATGAGCAGAGG+AGG 0.609229 1.2:+4316387 MS.gene044059:CDS
TGACTGTGTTGTCTTCCACA+TGG 0.610846 1.2:+4317633 MS.gene044059:CDS
CTATTTAGGAAATTCACCGA+TGG 0.613156 1.2:+4316508 MS.gene044059:CDS
TGGCAAGATAGTAGCTAACA+AGG 0.620882 1.2:-4316223 None:intergenic
GGGACGAAGCCAACGCCAGG+TGG 0.622803 1.2:-4316188 None:intergenic
CTGCCAAAGTTGATGAGCAG+AGG 0.624165 1.2:+4316384 MS.gene044059:CDS
AACCACGTTATCAGCTCCAA+CGG 0.626095 1.2:-4316459 None:intergenic
GGGTGACGGAAGGAAAAGGA+TGG 0.637555 1.2:-4316341 None:intergenic
TACCGTTGGAGCTGATAACG+TGG 0.651576 1.2:+4316457 MS.gene044059:CDS
CCGGTGTCATAGCTTCCATG+TGG 0.695251 1.2:-4317648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAAATTTTAAAGAAT+CGG - chr1.2:4317306-4317325 None:intergenic 10.0%
!! GATAAAATTTATCAAAACTT+TGG + chr1.2:4317155-4317174 MS.gene044059:intron 15.0%
!! TCAATGATTAATTAATGTAT+TGG + chr1.2:4316633-4316652 MS.gene044059:intron 15.0%
!! TTATATATAAATAATTGTGC+AGG + chr1.2:4316672-4316691 MS.gene044059:intron 15.0%
!! AATATAAAGAGAGAACAAAA+TGG - chr1.2:4316928-4316947 None:intergenic 20.0%
!! TATTTATGATGAATTTGTCA+TGG - chr1.2:4317478-4317497 None:intergenic 20.0%
!! TGATGAAATAAAGAACAAAA+GGG - chr1.2:4316616-4316635 None:intergenic 20.0%
!! TTGATGAAATAAAGAACAAA+AGG - chr1.2:4316617-4316636 None:intergenic 20.0%
!!! CAACTTTTCATTTCATTTTA+TGG + chr1.2:4317529-4317548 MS.gene044059:intron 20.0%
! ACATGTTACAATTACATGAA+TGG - chr1.2:4317343-4317362 None:intergenic 25.0%
! ATATGTACTTGACTGATATT+GGG + chr1.2:4317011-4317030 MS.gene044059:intron 25.0%
! TTGGCTTCTTACAAAAAATT+CGG + chr1.2:4317233-4317252 MS.gene044059:intron 25.0%
!! ATTTTATGGTAGAGACAATA+AGG + chr1.2:4317543-4317562 MS.gene044059:intron 25.0%
!! TATGGCCAATTTTTAAATTG+TGG + chr1.2:4317097-4317116 MS.gene044059:intron 25.0%
!! TCTCTCTTCTTTTTCTATTT+AGG + chr1.2:4316494-4316513 MS.gene044059:CDS 25.0%
!!! AATCTCTTCATTGTTTTTGT+TGG - chr1.2:4316246-4316265 None:intergenic 25.0%
!!! GTTTTGTTTTGATGTTTATC+AGG + chr1.2:4317591-4317610 MS.gene044059:intron 25.0%
AAAATGTTGCGATTGAATGT+GGG + chr1.2:4317047-4317066 MS.gene044059:intron 30.0%
AGCGACCACAATTTAAAAAT+TGG - chr1.2:4317105-4317124 None:intergenic 30.0%
CATATGTACTTGACTGATAT+TGG + chr1.2:4317010-4317029 MS.gene044059:intron 30.0%
GAAATAAAGAACAAAAGGGA+AGG - chr1.2:4316612-4316631 None:intergenic 30.0%
GAAGAGATTCAGAATTTCAA+TGG + chr1.2:4316257-4316276 MS.gene044059:CDS 30.0%
TAAAATGTTGCGATTGAATG+TGG + chr1.2:4317046-4317065 MS.gene044059:intron 30.0%
TGAAGCAATAAAATTCCCTT+GGG - chr1.2:4316364-4316383 None:intergenic 30.0%
TGGCTTCTTACAAAAAATTC+GGG + chr1.2:4317234-4317253 MS.gene044059:intron 30.0%
! AATTTTTAAATTGTGGTCGC+TGG + chr1.2:4317104-4317123 MS.gene044059:intron 30.0%
! CTCATTAGTGTCAATTTTGT+GGG + chr1.2:4317205-4317224 MS.gene044059:intron 30.0%
! TCTCATTAGTGTCAATTTTG+TGG + chr1.2:4317204-4317223 MS.gene044059:intron 30.0%
AACACACGACAAACAACAAA+AGG - chr1.2:4316700-4316719 None:intergenic 35.0%
AATAAAATTCCCTTGGGTGA+CGG - chr1.2:4316358-4316377 None:intergenic 35.0%
ATGGATCTAAAAGGTGAGTT+CGG + chr1.2:4316736-4316755 MS.gene044059:intron 35.0%
CATCAAAATCAGTGATGTTG+TGG - chr1.2:4317073-4317092 None:intergenic 35.0%
CTATTTAGGAAATTCACCGA+TGG + chr1.2:4316508-4316527 MS.gene044059:CDS 35.0%
GAGTAAGACGCAATTCAAAT+GGG - chr1.2:4316322-4316341 None:intergenic 35.0%
GTGAAGCAATAAAATTCCCT+TGG - chr1.2:4316365-4316384 None:intergenic 35.0%
! ACAGGATTTTGGATGCAAAA+GGG + chr1.2:4316419-4316438 MS.gene044059:CDS 35.0%
! GTCAATTTTGTGGGATAACT+TGG + chr1.2:4317214-4317233 MS.gene044059:intron 35.0%
!! CAATGGTTCTGAGCTAATTA+AGG + chr1.2:4316274-4316293 MS.gene044059:CDS 35.0%
!!! CACTGATTTTGATGTCTGTA+TGG + chr1.2:4317079-4317098 MS.gene044059:intron 35.0%
AAGCCTCAGGTATGACATTT+GGG + chr1.2:4316578-4316597 MS.gene044059:intron 40.0%
AGGACGTGATTTGAAGAATC+TGG - chr1.2:4317434-4317453 None:intergenic 40.0%
GCAATTCAAATGGGTCATAC+TGG - chr1.2:4316313-4316332 None:intergenic 40.0%
GGAGTAAGACGCAATTCAAA+TGG - chr1.2:4316323-4316342 None:intergenic 40.0%
TAACAAGGAGCTCATCAGAA+GGG - chr1.2:4316211-4316230 None:intergenic 40.0%
TGGCAAGATAGTAGCTAACA+AGG - chr1.2:4316226-4316245 None:intergenic 40.0%
TTTCCCAAATGTCATACCTG+AGG - chr1.2:4316584-4316603 None:intergenic 40.0%
! GACAGGATTTTGGATGCAAA+AGG + chr1.2:4316418-4316437 MS.gene044059:CDS 40.0%
! GGTACTGTAAGACAGGATTT+TGG + chr1.2:4316408-4316427 MS.gene044059:CDS 40.0%
AACCACGTTATCAGCTCCAA+CGG - chr1.2:4316462-4316481 None:intergenic 45.0%
AGGTGATGCATCGTATTTGC+AGG + chr1.2:4316891-4316910 MS.gene044059:intron 45.0%
ATGTCGCTCAGAAACCTATG+GGG + chr1.2:4316806-4316825 MS.gene044059:intron 45.0%
CAAATGGGTCATACTGGTAC+AGG - chr1.2:4316307-4316326 None:intergenic 45.0%
CAAGCCTCAGGTATGACATT+TGG + chr1.2:4316577-4316596 MS.gene044059:intron 45.0%
CTAACAAGGAGCTCATCAGA+AGG - chr1.2:4316212-4316231 None:intergenic 45.0%
GATGTCGCTCAGAAACCTAT+GGG + chr1.2:4316805-4316824 MS.gene044059:intron 45.0%
TGACTGTGTTGTCTTCCACA+TGG + chr1.2:4317633-4317652 MS.gene044059:CDS 45.0%
TGATGTCGCTCAGAAACCTA+TGG + chr1.2:4316804-4316823 MS.gene044059:intron 45.0%
! CTTTTAGATCCATCCCTGGT+GGG - chr1.2:4316729-4316748 None:intergenic 45.0%
! TCACCTTTTAGATCCATCCC+TGG - chr1.2:4316733-4316752 None:intergenic 45.0%
!! AAAAAAATTTAAAGAAAAAA+AGG - chr1.2:4317454-4317473 None:intergenic 5.0%
AGTGCATGCTTAAGCTGCTC+CGG - chr1.2:4317670-4317689 None:intergenic 50.0%
CACTCTTGCTAACAAGCCTC+AGG + chr1.2:4316565-4316584 MS.gene044059:CDS 50.0%
CCACATGGAAGCTATGACAC+CGG + chr1.2:4317648-4317667 MS.gene044059:CDS 50.0%
CCACCAGGGATGGATCTAAA+AGG + chr1.2:4316727-4316746 MS.gene044059:intron 50.0%
CCTCCTCTGCTCATCAACTT+TGG - chr1.2:4316390-4316409 None:intergenic 50.0%
GAATTGTTTCCACCTGGCGT+TGG + chr1.2:4316179-4316198 MS.gene044059:CDS 50.0%
GCAGCTTAAGCATGCACTTC+TGG + chr1.2:4317672-4317691 MS.gene044059:CDS 50.0%
GCCTTCTTCAACATCCGTCA+AGG - chr1.2:4316764-4316783 None:intergenic 50.0%
GCTGTTCGAGACATTACCGT+TGG + chr1.2:4316443-4316462 MS.gene044059:CDS 50.0%
GTACTCGTACATAGTCCAGC+TGG - chr1.2:4316546-4316565 None:intergenic 50.0%
TGTCGCTCAGAAACCTATGG+GGG + chr1.2:4316807-4316826 MS.gene044059:intron 50.0%
! CCTTTTAGATCCATCCCTGG+TGG - chr1.2:4316730-4316749 None:intergenic 50.0%
! CTTTTCCTTCCGTCACCCAA+GGG + chr1.2:4316346-4316365 MS.gene044059:CDS 50.0%
! GCCTTGACGGATGTTGAAGA+AGG + chr1.2:4316760-4316779 MS.gene044059:intron 50.0%
! GCTAGTGCTGCTATTGGTGT+TGG + chr1.2:4316835-4316854 MS.gene044059:intron 50.0%
! GGAGCTGATAACGTGGTTCT+AGG + chr1.2:4316464-4316483 MS.gene044059:CDS 50.0%
! TACCGTTGGAGCTGATAACG+TGG + chr1.2:4316457-4316476 MS.gene044059:CDS 50.0%
!! AAATTCCCTTGGGTGACGGA+AGG - chr1.2:4316354-4316373 None:intergenic 50.0%
!! CAGAGGAGGTACTGTAAGAC+AGG + chr1.2:4316401-4316420 MS.gene044059:CDS 50.0%
!! CCAAAGTTGATGAGCAGAGG+AGG + chr1.2:4316387-4316406 MS.gene044059:CDS 50.0%
!! CTGCCAAAGTTGATGAGCAG+AGG + chr1.2:4316384-4316403 MS.gene044059:CDS 50.0%
!!! CTGGTTTTGACAGCGTCCAT+CGG - chr1.2:4316527-4316546 None:intergenic 50.0%
AGGTGAGTTCGGAGCCTTGA+CGG + chr1.2:4316747-4316766 MS.gene044059:intron 55.0%
GTGTGTTTGACTGCCCACCA+GGG + chr1.2:4316713-4316732 MS.gene044059:intron 55.0%
GTTGAAGAAGGCGATGCTGC+TGG + chr1.2:4316772-4316791 MS.gene044059:intron 55.0%
TGGACGCTGTCAAAACCAGC+TGG + chr1.2:4316528-4316547 MS.gene044059:CDS 55.0%
! CCTTTTCCTTCCGTCACCCA+AGG + chr1.2:4316345-4316364 MS.gene044059:CDS 55.0%
! GCTGGTGCTAGTGCTGCTAT+TGG + chr1.2:4316829-4316848 MS.gene044059:intron 55.0%
!! CCGGTGTCATAGCTTCCATG+TGG - chr1.2:4317651-4317670 None:intergenic 55.0%
!! CCTTGGGTGACGGAAGGAAA+AGG - chr1.2:4316348-4316367 None:intergenic 55.0%
!! GGGTGACGGAAGGAAAAGGA+TGG - chr1.2:4316344-4316363 None:intergenic 55.0%
!! GTTGGTTCTGCTGCTGATGC+TGG + chr1.2:4316853-4316872 MS.gene044059:intron 55.0%
CGTGTGTTTGACTGCCCACC+AGG + chr1.2:4316712-4316731 MS.gene044059:intron 60.0%
GCTCAGAAACCTATGGGGGC+TGG + chr1.2:4316811-4316830 MS.gene044059:intron 60.0%
GTTTGACTGCCCACCAGGGA+TGG + chr1.2:4316717-4316736 MS.gene044059:intron 60.0%
GAAGGGACGAAGCCAACGCC+AGG - chr1.2:4316194-4316213 None:intergenic 65.0%
GCACTAGCACCAGCCCCCAT+AGG - chr1.2:4316823-4316842 None:intergenic 65.0%
! GCTGGTCGTGCTGCTGAGCA+AGG + chr1.2:4316871-4316890 MS.gene044059:intron 65.0%
GGGACGAAGCCAACGCCAGG+TGG - chr1.2:4316191-4316210 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 4316176 4317729 4316176 ID=MS.gene044059
chr1.2 mRNA 4316176 4317729 4316176 ID=MS.gene044059.t1;Parent=MS.gene044059
chr1.2 exon 4316176 4316586 4316176 ID=MS.gene044059.t1.exon1;Parent=MS.gene044059.t1
chr1.2 CDS 4316176 4316586 4316176 ID=cds.MS.gene044059.t1;Parent=MS.gene044059.t1
chr1.2 exon 4317613 4317729 4317613 ID=MS.gene044059.t1.exon2;Parent=MS.gene044059.t1
chr1.2 CDS 4317613 4317729 4317613 ID=cds.MS.gene044059.t1;Parent=MS.gene044059.t1
Gene Sequence

>MS.gene044059

ATGGAATTGTTTCCACCTGGCGTTGGCTTCGTCCCTTCTGATGAGCTCCTTGTTAGCTACTATCTTGCCAACAAAAACAATGAAGAGATTCAGAATTTCAATGGTTCTGAGCTAATTAAGGAGCTGAACCTGTACCAGTATGACCCATTTGAATTGCGTCTTACTCCATCCTTTTCCTTCCGTCACCCAAGGGAATTTTATTGCTTCACTGCCAAAGTTGATGAGCAGAGGAGGTACTGTAAGACAGGATTTTGGATGCAAAAGGGAGCTGTTCGAGACATTACCGTTGGAGCTGATAACGTGGTTCTAGGAAAGAAGTCTCTCTTCTTTTTCTATTTAGGAAATTCACCGATGGACGCTGTCAAAACCAGCTGGACTATGTACGAGTACACTCTTGCTAACAAGCCTCAGGTATGACATTTGGGAAAACTAACCTTCCCTTTTGTTCTTTATTTCATCAATGATTAATTAATGTATTGGTAACTACTAACTATTTTTATATATAAATAATTGTGCAGGCTCCTTTTGTTGTTTGTCGTGTGTTTGACTGCCCACCAGGGATGGATCTAAAAGGTGAGTTCGGAGCCTTGACGGATGTTGAAGAAGGCGATGCTGCTGGCGATGACTCTGATGTCGCTCAGAAACCTATGGGGGCTGGTGCTAGTGCTGCTATTGGTGTTGGTTCTGCTGCTGATGCTGGTCGTGCTGCTGAGCAAGGTGATGCATCGTATTTGCAGGTAAAATATATTCCATTTTGTTCTCTCTTTATATTTTGTTGTCAGTTAGAATTTTAGAATAGTTGAATGTGTCATAAATCATAATTTTTTTTTGTTGCATATGTACTTGACTGATATTGGGCATAAGTTTTAATAAAATGTTGCGATTGAATGTGGGCCACAACATCACTGATTTTGATGTCTGTATGGCCAATTTTTAAATTGTGGTCGCTGGCTATTGCATCACAAACATTGACAGTGTAGATAAAATTTATCAAAACTTTGGTTTAATTTCAAGTTTTCATATTCGATTCTCATTAGTGTCAATTTTGTGGGATAACTTGGCTTCTTACAAAAAATTCGGGTTATTGTTAAGAGTCAATCAATTAACGTTGTTGATGTTCTTTGAAACCGATTCTTTAAAATTTCAAAAAATTTACAACTCAATCCATTCATGTAATTGTAACATGTCAAAATGTTAACTTGTGTGTAGAAATTAAGTGATAGTAATTCTCAAAACATATAGCAATTGATTATTACCAGATTCTTCAAATCACGTCCTTTTTTTCTTTAAATTTTTTTGCCATGACAAATTCATCATAAATATTGTTGTTGTTGTCGTCACTTTTTGACAATGCAACTTTTCATTTCATTTTATGGTAGAGACAATAAGGTATTGTTGAAATATTGAATTGCTTTGTTTTGTTTTGATGTTTATCAGGCGAGTTATGCTGCATTTCTTGACTGTGTTGTCTTCCACATGGAAGCTATGACACCGGAGCAGCTTAAGCATGCACTTCTGGACGAAGATTTTCTTGAACTCGCTGATTTTGTATAA
Protein sequence

>MS.gene044059.t1

MELFPPGVGFVPSDELLVSYYLANKNNEEIQNFNGSELIKELNLYQYDPFELRLTPSFSFRHPREFYCFTAKVDEQRRYCKTGFWMQKGAVRDITVGADNVVLGKKSLFFFYLGNSPMDAVKTSWTMYEYTLANKPQASYAAFLDCVVFHMEAMTPEQLKHALLDEDFLELADFV