Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044061.t1 | TKY57836.1 | 36.5 | 255 | 127 | 6 | 3 | 223 | 8 | 261 | 2.40E-30 | 142.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044061.t1 | Q9ZVH0 | 32.6 | 138 | 78 | 5 | 2 | 132 | 14 | 143 | 8.0e-11 | 68.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044061.t1 | A0A4D6MC66 | 47.4 | 137 | 66 | 2 | 4 | 134 | 9 | 145 | 1.9e-26 | 129.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene044061.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044061.t1 | MTR_2g080010 | 34.307 | 137 | 79 | 4 | 4 | 135 | 15 | 145 | 4.56e-15 | 73.2 |
MS.gene044061.t1 | MTR_4g089135 | 35.075 | 134 | 76 | 4 | 4 | 132 | 15 | 142 | 1.39e-14 | 72.0 |
MS.gene044061.t1 | MTR_7g100990 | 30.055 | 183 | 105 | 6 | 4 | 170 | 11 | 186 | 1.86e-14 | 71.2 |
MS.gene044061.t1 | MTR_4g094302 | 32.558 | 129 | 78 | 4 | 4 | 132 | 11 | 130 | 2.22e-14 | 68.6 |
MS.gene044061.t1 | MTR_4g094302 | 32.558 | 129 | 78 | 4 | 4 | 132 | 11 | 130 | 5.25e-14 | 68.2 |
MS.gene044061.t1 | MTR_5g012080 | 31.690 | 142 | 78 | 6 | 4 | 135 | 7 | 139 | 6.04e-14 | 70.1 |
MS.gene044061.t1 | MTR_2g093810 | 32.374 | 139 | 77 | 5 | 4 | 134 | 14 | 143 | 1.06e-13 | 69.3 |
MS.gene044061.t1 | MTR_2g064090 | 33.103 | 145 | 81 | 7 | 4 | 140 | 6 | 142 | 8.12e-13 | 67.0 |
MS.gene044061.t1 | MTR_5g040420 | 32.117 | 137 | 80 | 5 | 2 | 132 | 12 | 141 | 1.04e-12 | 66.6 |
MS.gene044061.t1 | MTR_8g023860 | 31.655 | 139 | 78 | 5 | 1 | 130 | 9 | 139 | 1.09e-12 | 66.6 |
MS.gene044061.t1 | MTR_5g021710 | 31.159 | 138 | 83 | 4 | 4 | 135 | 8 | 139 | 1.22e-12 | 66.2 |
MS.gene044061.t1 | MTR_7g105170 | 32.374 | 139 | 80 | 5 | 1 | 130 | 1 | 134 | 2.17e-12 | 65.1 |
MS.gene044061.t1 | MTR_3g064580 | 31.410 | 156 | 88 | 7 | 4 | 148 | 6 | 153 | 3.39e-12 | 65.5 |
MS.gene044061.t1 | MTR_8g467490 | 30.435 | 138 | 85 | 4 | 2 | 134 | 12 | 143 | 5.57e-12 | 64.7 |
MS.gene044061.t1 | MTR_8g023840 | 32.857 | 140 | 75 | 7 | 4 | 133 | 11 | 141 | 6.48e-12 | 64.3 |
MS.gene044061.t1 | MTR_4g036030 | 28.105 | 153 | 98 | 4 | 4 | 150 | 7 | 153 | 1.33e-11 | 63.2 |
MS.gene044061.t1 | MTR_8g059170 | 34.328 | 134 | 75 | 5 | 4 | 132 | 14 | 139 | 1.60e-11 | 63.2 |
MS.gene044061.t1 | MTR_4g134460 | 36.567 | 134 | 71 | 7 | 6 | 133 | 56 | 181 | 1.71e-11 | 63.2 |
MS.gene044061.t1 | MTR_8g076110 | 31.852 | 135 | 80 | 4 | 4 | 132 | 6 | 134 | 1.76e-11 | 62.8 |
MS.gene044061.t1 | MTR_8g023930 | 30.216 | 139 | 78 | 5 | 2 | 130 | 22 | 151 | 9.39e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044061.t1 | AT1G01720 | 35.036 | 137 | 73 | 5 | 4 | 134 | 7 | 133 | 5.14e-14 | 69.7 |
MS.gene044061.t1 | AT5G64530 | 32.824 | 131 | 75 | 4 | 4 | 134 | 3 | 120 | 6.00e-14 | 67.4 |
MS.gene044061.t1 | AT2G24430 | 35.766 | 137 | 75 | 5 | 2 | 132 | 14 | 143 | 7.95e-14 | 69.7 |
MS.gene044061.t1 | AT2G24430 | 35.766 | 137 | 75 | 5 | 2 | 132 | 14 | 143 | 7.95e-14 | 69.7 |
MS.gene044061.t1 | AT3G29035 | 33.333 | 132 | 79 | 4 | 4 | 132 | 24 | 149 | 2.97e-13 | 68.2 |
MS.gene044061.t1 | AT1G26870 | 33.333 | 135 | 77 | 5 | 2 | 130 | 14 | 141 | 3.14e-13 | 68.6 |
MS.gene044061.t1 | AT4G17980 | 32.374 | 139 | 81 | 5 | 3 | 134 | 5 | 137 | 4.96e-13 | 66.6 |
MS.gene044061.t1 | AT5G08790 | 35.766 | 137 | 72 | 6 | 4 | 134 | 7 | 133 | 7.12e-13 | 66.6 |
MS.gene044061.t1 | AT4G17980 | 32.374 | 139 | 81 | 5 | 3 | 134 | 5 | 137 | 9.57e-13 | 66.2 |
MS.gene044061.t1 | AT5G63790 | 35.766 | 137 | 72 | 6 | 4 | 134 | 50 | 176 | 1.19e-12 | 66.2 |
MS.gene044061.t1 | AT5G62380 | 30.519 | 154 | 91 | 5 | 4 | 149 | 7 | 152 | 1.30e-12 | 66.2 |
MS.gene044061.t1 | AT5G62380 | 30.519 | 154 | 91 | 5 | 4 | 149 | 7 | 152 | 1.30e-12 | 66.2 |
MS.gene044061.t1 | AT5G63790 | 35.766 | 137 | 72 | 6 | 4 | 134 | 60 | 186 | 1.38e-12 | 66.2 |
MS.gene044061.t1 | AT1G77450 | 32.484 | 157 | 90 | 6 | 4 | 154 | 10 | 156 | 1.38e-12 | 65.5 |
MS.gene044061.t1 | AT1G54330 | 31.788 | 151 | 90 | 5 | 4 | 148 | 6 | 149 | 2.12e-12 | 65.5 |
MS.gene044061.t1 | AT3G15500 | 34.074 | 135 | 74 | 6 | 4 | 132 | 14 | 139 | 2.64e-12 | 65.1 |
MS.gene044061.t1 | AT5G39610 | 32.576 | 132 | 80 | 4 | 4 | 132 | 20 | 145 | 3.78e-12 | 64.7 |
MS.gene044061.t1 | AT1G12260 | 28.846 | 156 | 93 | 5 | 4 | 150 | 7 | 153 | 4.44e-12 | 64.7 |
MS.gene044061.t1 | AT1G65910 | 32.353 | 136 | 77 | 6 | 4 | 132 | 6 | 133 | 6.81e-12 | 64.7 |
MS.gene044061.t1 | AT5G17260 | 32.353 | 136 | 77 | 6 | 4 | 132 | 6 | 133 | 6.82e-12 | 64.7 |
MS.gene044061.t1 | AT2G43000 | 28.750 | 160 | 98 | 6 | 6 | 155 | 20 | 173 | 7.07e-12 | 63.5 |
MS.gene044061.t1 | AT5G22290 | 25.140 | 179 | 105 | 8 | 6 | 175 | 23 | 181 | 7.25e-12 | 64.3 |
MS.gene044061.t1 | AT1G12260 | 28.846 | 156 | 93 | 5 | 4 | 150 | 7 | 153 | 7.26e-12 | 64.3 |
MS.gene044061.t1 | AT4G10350 | 30.488 | 164 | 94 | 8 | 4 | 156 | 9 | 163 | 7.56e-12 | 63.9 |
MS.gene044061.t1 | AT1G52890 | 34.815 | 135 | 73 | 6 | 4 | 132 | 14 | 139 | 7.78e-12 | 63.9 |
MS.gene044061.t1 | AT3G15510 | 31.298 | 131 | 79 | 4 | 10 | 135 | 23 | 147 | 1.00e-11 | 63.9 |
MS.gene044061.t1 | AT1G62700 | 28.846 | 156 | 93 | 5 | 4 | 150 | 7 | 153 | 1.23e-11 | 63.5 |
MS.gene044061.t1 | AT1G62700 | 28.846 | 156 | 93 | 5 | 4 | 150 | 7 | 153 | 1.23e-11 | 63.5 |
MS.gene044061.t1 | AT3G44290 | 27.206 | 136 | 79 | 6 | 6 | 132 | 16 | 140 | 1.42e-11 | 62.4 |
MS.gene044061.t1 | AT3G10490 | 31.618 | 136 | 78 | 6 | 4 | 132 | 27 | 154 | 1.50e-11 | 62.4 |
MS.gene044061.t1 | AT5G66300 | 30.075 | 133 | 81 | 4 | 4 | 130 | 12 | 138 | 1.64e-11 | 62.8 |
MS.gene044061.t1 | AT2G02450 | 34.815 | 135 | 76 | 6 | 6 | 135 | 53 | 180 | 2.96e-11 | 62.4 |
MS.gene044061.t1 | AT2G02450 | 34.815 | 135 | 76 | 6 | 6 | 135 | 53 | 180 | 4.42e-11 | 62.0 |
MS.gene044061.t1 | AT1G32510 | 30.137 | 146 | 82 | 6 | 3 | 135 | 5 | 143 | 5.60e-11 | 61.2 |
Find 45 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAATTATGCTTTCAATTA+TGG | 0.116873 | 1.2:-4336888 | MS.gene044061:CDS |
CAATGGTTCTGACCTGATTC+AGG | 0.237830 | 1.2:-4338057 | MS.gene044061:CDS |
GGCACTGTAAGACGGGATTT+TGG | 0.254019 | 1.2:-4337923 | MS.gene044061:CDS |
CCTTGGGTGACGGAAGAAAA+AGG | 0.350861 | 1.2:+4337986 | None:intergenic |
ATTGAAAGCATAATTTGCTC+AGG | 0.423054 | 1.2:+4336893 | None:intergenic |
ACAGGTTCAGCTCCTGAATC+AGG | 0.430846 | 1.2:+4338045 | None:intergenic |
CCTCATCTGCTCATCAACTT+TGG | 0.458061 | 1.2:+4337944 | None:intergenic |
GAAGAGGCTCAGAATTTCAA+TGG | 0.469135 | 1.2:-4338074 | MS.gene044061:CDS |
GCAATTCAAACGGATCATAC+TGG | 0.470273 | 1.2:+4338021 | None:intergenic |
ACTCCATTCGTCTTATCAGC+AGG | 0.475127 | 1.2:+4337534 | None:intergenic |
GTTGATGAAGGCGATGCTGC+TGG | 0.479728 | 1.2:-4337564 | MS.gene044061:intron |
GTGAAGCAGCAAAATTCCCT+TGG | 0.487125 | 1.2:+4337969 | None:intergenic |
TGGAGTTACTCAGAAACCTA+TGG | 0.493323 | 1.2:-4337517 | MS.gene044061:CDS |
GGAGTAAAACGCAATTCAAA+CGG | 0.503611 | 1.2:+4338011 | None:intergenic |
AGCAAAATTCCCTTGGGTGA+CGG | 0.508819 | 1.2:+4337976 | None:intergenic |
CAGATGAGGCACTGTAAGAC+GGG | 0.518000 | 1.2:-4337930 | MS.gene044061:CDS |
CAAACGGATCATACTGGTAC+AGG | 0.523566 | 1.2:+4338027 | None:intergenic |
AGAATGCCATCAAAACTAGC+TGG | 0.534697 | 1.2:-4337803 | MS.gene044061:CDS |
GCTGTTCGAGACATTACTGT+TGG | 0.540803 | 1.2:-4337888 | MS.gene044061:CDS |
CGCACTTGCTAACAATCCTC+AGG | 0.543748 | 1.2:-4337766 | MS.gene044061:intron |
TTGAAAGCATAATTTGCTCA+GGG | 0.552658 | 1.2:+4336894 | None:intergenic |
GGAGTTACTCAGAAACCTAT+GGG | 0.559803 | 1.2:-4337516 | MS.gene044061:CDS |
TGAAGCAGCAAAATTCCCTT+GGG | 0.560910 | 1.2:+4337970 | None:intergenic |
CCAAAGTTGATGAGCAGATG+AGG | 0.562182 | 1.2:-4337944 | MS.gene044061:CDS |
TGGCAAGGTAGTGGCTAACA+AGG | 0.563537 | 1.2:+4338108 | None:intergenic |
AAAACAAATAAATTTATACA+AGG | 0.565586 | 1.2:+4336840 | None:intergenic |
TGACTATGCTGTCTTGCACA+TGG | 0.580894 | 1.2:-4336927 | MS.gene044061:CDS |
GACCCTGCTGATAAGACGAA+TGG | 0.589128 | 1.2:-4337537 | MS.gene044061:CDS |
GCAGATGAGGCACTGTAAGA+CGG | 0.594345 | 1.2:-4337931 | MS.gene044061:CDS |
TAACAAGGAGTTCATCAGAA+GGG | 0.600406 | 1.2:+4338123 | None:intergenic |
GCAATGGAATTGCTTCCACC+TGG | 0.606391 | 1.2:-4338158 | MS.gene044061:CDS |
AACAAGGAGTTCATCAGAAG+GGG | 0.610616 | 1.2:+4338124 | None:intergenic |
CTCCATTCGTCTTATCAGCA+GGG | 0.617597 | 1.2:+4337535 | None:intergenic |
TGGAACTGATAACATGTTGG+TGG | 0.647517 | 1.2:-4337868 | MS.gene044061:CDS |
TGTTGGAACTGATAACATGT+TGG | 0.651961 | 1.2:-4337871 | MS.gene044061:CDS |
GAAGGGGCGAAGTCAACACC+AGG | 0.655180 | 1.2:+4338140 | None:intergenic |
ACTAGTGCTACTGCTGAGCA+AGG | 0.655224 | 1.2:-4337473 | MS.gene044061:CDS |
GGGGCGAAGTCAACACCAGG+TGG | 0.667873 | 1.2:+4338143 | None:intergenic |
TGAAAGCATAATTTGCTCAG+GGG | 0.670703 | 1.2:+4336895 | None:intergenic |
CTAACAAGGAGTTCATCAGA+AGG | 0.671540 | 1.2:+4338122 | None:intergenic |
GGAACTGATAACATGTTGGT+GGG | 0.673386 | 1.2:-4337867 | MS.gene044061:CDS |
AGTTACTCAGAAACCTATGG+GGG | 0.693614 | 1.2:-4337514 | MS.gene044061:CDS |
GAGTTACTCAGAAACCTATG+GGG | 0.701627 | 1.2:-4337515 | MS.gene044061:CDS |
GTTACTCAGAAACCTATGGG+GGG | 0.727694 | 1.2:-4337513 | MS.gene044061:CDS |
AGTGCTACTGCTGAGCAAGG+CGG | 0.749137 | 1.2:-4337470 | MS.gene044061:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTTAAAATTATTATGC+AGG | - | chr1.2:4337350-4337369 | MS.gene044061:intron | 10.0% |
!! | AACGTTAACTAATAAAAAAA+AGG | + | chr1.2:4337843-4337862 | None:intergenic | 15.0% |
!! | AATATAAAGAGAGATCAAAA+TGG | + | chr1.2:4337613-4337632 | None:intergenic | 20.0% |
!! | ATAAGATCAACAACATTAAT+TGG | + | chr1.2:4337638-4337657 | None:intergenic | 20.0% |
!! | TCAAGGATTAATTAATGTAT+TGG | - | chr1.2:4337309-4337328 | MS.gene044061:intron | 20.0% |
!!! | ATTTTATAATGAAGACAAGA+AGG | - | chr1.2:4337991-4338010 | MS.gene044061:CDS | 20.0% |
!!! | TCTCTTTTTATGTTCTATAT+AGG | - | chr1.2:4337171-4337190 | MS.gene044061:intron | 20.0% |
! | AAAAAATACCATCACATGAA+TGG | + | chr1.2:4337704-4337723 | None:intergenic | 25.0% |
! | GCAAATTATGCTTTCAATTA+TGG | - | chr1.2:4338120-4338139 | MS.gene044061:CDS | 25.0% |
!!! | TCAAATGTCACATATTTTGA+AGG | - | chr1.2:4337565-4337584 | MS.gene044061:intron | 25.0% |
!!! | TGAATTGCTTTGTTTGTTTT+TGG | - | chr1.2:4338028-4338047 | MS.gene044061:CDS | 25.0% |
CTCTGTTCATTATTTCATCA+AGG | - | chr1.2:4337292-4337311 | MS.gene044061:intron | 30.0% | |
CTTGATGAAATAATGAACAG+AGG | + | chr1.2:4337294-4337313 | None:intergenic | 30.0% | |
TACATTCAGTACAAAGATTG+AGG | + | chr1.2:4337732-4337751 | None:intergenic | 30.0% | |
!! | ATTGAAAGCATAATTTGCTC+AGG | + | chr1.2:4338118-4338137 | None:intergenic | 30.0% |
!! | TTGAAAGCATAATTTGCTCA+GGG | + | chr1.2:4338117-4338136 | None:intergenic | 30.0% |
!!! | GTTTGTTTTTGGTGTTTATC+AGG | - | chr1.2:4338039-4338058 | MS.gene044061:CDS | 30.0% |
GGAGTAAAACGCAATTCAAA+CGG | + | chr1.2:4337000-4337019 | None:intergenic | 35.0% | |
TAACAAGGAGTTCATCAGAA+GGG | + | chr1.2:4336888-4336907 | None:intergenic | 35.0% | |
TGCCAACAAAAACAATGAAG+AGG | - | chr1.2:4336918-4336937 | MS.gene044061:CDS | 35.0% | |
TGTTGGAACTGATAACATGT+TGG | - | chr1.2:4337137-4337156 | MS.gene044061:intron | 35.0% | |
!! | TGAAAGCATAATTTGCTCAG+GGG | + | chr1.2:4338116-4338135 | None:intergenic | 35.0% |
!! | TTTGGAGCTATAGTTGATGA+AGG | - | chr1.2:4337432-4337451 | MS.gene044061:intron | 35.0% |
!!! | AGCCTCTTCATTGTTTTTGT+TGG | + | chr1.2:4336923-4336942 | None:intergenic | 35.0% |
!!! | CTTCATTGTTTTTGTTGGCA+AGG | + | chr1.2:4336918-4336937 | None:intergenic | 35.0% |
AACAAGGAGTTCATCAGAAG+GGG | + | chr1.2:4336887-4336906 | None:intergenic | 40.0% | |
AACTCGATCCATTCATGTGA+TGG | - | chr1.2:4337693-4337712 | MS.gene044061:intron | 40.0% | |
AGAATGCCATCAAAACTAGC+TGG | - | chr1.2:4337205-4337224 | MS.gene044061:intron | 40.0% | |
AGGACGTGATTTGAAGAATC+TGG | + | chr1.2:4337876-4337895 | None:intergenic | 40.0% | |
AGTTACTCAGAAACCTATGG+GGG | - | chr1.2:4337494-4337513 | MS.gene044061:CDS | 40.0% | |
CTAACAAGGAGTTCATCAGA+AGG | + | chr1.2:4336889-4336908 | None:intergenic | 40.0% | |
GAAGAGGCTCAGAATTTCAA+TGG | - | chr1.2:4336934-4336953 | MS.gene044061:CDS | 40.0% | |
GAGTTACTCAGAAACCTATG+GGG | - | chr1.2:4337493-4337512 | MS.gene044061:CDS | 40.0% | |
GCAATTCAAACGGATCATAC+TGG | + | chr1.2:4336990-4337009 | None:intergenic | 40.0% | |
GGAACTGATAACATGTTGGT+GGG | - | chr1.2:4337141-4337160 | MS.gene044061:intron | 40.0% | |
GGAGTTACTCAGAAACCTAT+GGG | - | chr1.2:4337492-4337511 | MS.gene044061:CDS | 40.0% | |
TGAAGCAGCAAAATTCCCTT+GGG | + | chr1.2:4337041-4337060 | None:intergenic | 40.0% | |
TGGAACTGATAACATGTTGG+TGG | - | chr1.2:4337140-4337159 | MS.gene044061:intron | 40.0% | |
TGGAGTTACTCAGAAACCTA+TGG | - | chr1.2:4337491-4337510 | MS.gene044061:CDS | 40.0% | |
TTGCTAACAATCCTCAGGTA+TGG | - | chr1.2:4337247-4337266 | MS.gene044061:intron | 40.0% | |
! | ACGGGATTTTGGATGCAAAA+GGG | - | chr1.2:4337096-4337115 | MS.gene044061:intron | 40.0% |
!! | AGTTTTGATGGCATTCTGAG+CGG | + | chr1.2:4337202-4337221 | None:intergenic | 40.0% |
!! | TGTTTTTGTTGGCAAGGTAG+TGG | + | chr1.2:4336912-4336931 | None:intergenic | 40.0% |
!!! | ATATTTTGAAGGCACTCTGC+AGG | - | chr1.2:4337576-4337595 | MS.gene044061:intron | 40.0% |
!!! | CATAGTCCAGCTAGTTTTGA+TGG | + | chr1.2:4337214-4337233 | None:intergenic | 40.0% |
ACTCCATTCGTCTTATCAGC+AGG | + | chr1.2:4337477-4337496 | None:intergenic | 45.0% | |
AGCAAAATTCCCTTGGGTGA+CGG | + | chr1.2:4337035-4337054 | None:intergenic | 45.0% | |
CAAACGGATCATACTGGTAC+AGG | + | chr1.2:4336984-4337003 | None:intergenic | 45.0% | |
CCTCATCTGCTCATCAACTT+TGG | + | chr1.2:4337067-4337086 | None:intergenic | 45.0% | |
CTCCATTCGTCTTATCAGCA+GGG | + | chr1.2:4337476-4337495 | None:intergenic | 45.0% | |
GCTGTTCGAGACATTACTGT+TGG | - | chr1.2:4337120-4337139 | MS.gene044061:intron | 45.0% | |
GTGAAGCAGCAAAATTCCCT+TGG | + | chr1.2:4337042-4337061 | None:intergenic | 45.0% | |
GTTACTCAGAAACCTATGGG+GGG | - | chr1.2:4337495-4337514 | MS.gene044061:CDS | 45.0% | |
TGACTATGCTGTCTTGCACA+TGG | - | chr1.2:4338081-4338100 | MS.gene044061:CDS | 45.0% | |
TTGGATCTGGATGCTGAGTT+TGG | - | chr1.2:4337414-4337433 | MS.gene044061:intron | 45.0% | |
TTTCGCAAATGCCATACCTG+AGG | + | chr1.2:4337261-4337280 | None:intergenic | 45.0% | |
! | CGGGATTTTGGATGCAAAAG+GGG | - | chr1.2:4337097-4337116 | MS.gene044061:intron | 45.0% |
! | CTTTTTCTTCCGTCACCCAA+GGG | - | chr1.2:4337023-4337042 | MS.gene044061:intron | 45.0% |
! | GACGGGATTTTGGATGCAAA+AGG | - | chr1.2:4337095-4337114 | MS.gene044061:intron | 45.0% |
! | GGGATTTTGGATGCAAAAGG+GGG | - | chr1.2:4337098-4337117 | MS.gene044061:intron | 45.0% |
!! | CAATGGTTCTGACCTGATTC+AGG | - | chr1.2:4336951-4336970 | MS.gene044061:intron | 45.0% |
!! | CCAAAGTTGATGAGCAGATG+AGG | - | chr1.2:4337064-4337083 | MS.gene044061:intron | 45.0% |
!! | AAATTTAAAGAAAAATAAAA+AGG | + | chr1.2:4337896-4337915 | None:intergenic | 5.0% |
ACAGGTTCAGCTCCTGAATC+AGG | + | chr1.2:4336966-4336985 | None:intergenic | 50.0% | |
CATCCAGATCCAACTCTGGT+GGG | + | chr1.2:4337407-4337426 | None:intergenic | 50.0% | |
GACCCTGCTGATAAGACGAA+TGG | - | chr1.2:4337471-4337490 | MS.gene044061:CDS | 50.0% | |
TCAGCATCCAGATCCAACTC+TGG | + | chr1.2:4337411-4337430 | None:intergenic | 50.0% | |
! | ACTAGTGCTACTGCTGAGCA+AGG | - | chr1.2:4337535-4337554 | MS.gene044061:CDS | 50.0% |
! | CCTTTTTCTTCCGTCACCCA+AGG | - | chr1.2:4337022-4337041 | MS.gene044061:intron | 50.0% |
! | CGCACTTGCTAACAATCCTC+AGG | - | chr1.2:4337242-4337261 | MS.gene044061:intron | 50.0% |
! | GGCACTGTAAGACGGGATTT+TGG | - | chr1.2:4337085-4337104 | MS.gene044061:intron | 50.0% |
! | TGGCAAGGTAGTGGCTAACA+AGG | + | chr1.2:4336903-4336922 | None:intergenic | 50.0% |
!! | CAGATGAGGCACTGTAAGAC+GGG | - | chr1.2:4337078-4337097 | MS.gene044061:intron | 50.0% |
!! | CCTTGGGTGACGGAAGAAAA+AGG | + | chr1.2:4337025-4337044 | None:intergenic | 50.0% |
!! | GCAGATGAGGCACTGTAAGA+CGG | - | chr1.2:4337077-4337096 | MS.gene044061:intron | 50.0% |
!! | GGGTGACGGAAGAAAAAGGA+CGG | + | chr1.2:4337021-4337040 | None:intergenic | 50.0% |
GCATCCAGATCCAACTCTGG+TGG | + | chr1.2:4337408-4337427 | None:intergenic | 55.0% | |
GTTTGACTGCCCACCAGAGT+TGG | - | chr1.2:4337395-4337414 | MS.gene044061:intron | 55.0% | |
TCAGAAACCTATGGGGGGCT+GGG | - | chr1.2:4337500-4337519 | MS.gene044061:CDS | 55.0% | |
! | AGTGCTACTGCTGAGCAAGG+CGG | - | chr1.2:4337538-4337557 | MS.gene044061:CDS | 55.0% |
! | GTTGATGAAGGCGATGCTGC+TGG | - | chr1.2:4337444-4337463 | MS.gene044061:CDS | 55.0% |
CAGAAACCTATGGGGGGCTG+GGG | - | chr1.2:4337501-4337520 | MS.gene044061:CDS | 60.0% | |
CTCAGAAACCTATGGGGGGC+TGG | - | chr1.2:4337499-4337518 | MS.gene044061:CDS | 60.0% | |
CTGCCCACCAGAGTTGGATC+TGG | - | chr1.2:4337401-4337420 | MS.gene044061:intron | 60.0% | |
GAAGGGGCGAAGTCAACACC+AGG | + | chr1.2:4336871-4336890 | None:intergenic | 60.0% | |
AACCTATGGGGGGCTGGGGA+TGG | - | chr1.2:4337505-4337524 | MS.gene044061:CDS | 65.0% | |
ACCTATGGGGGGCTGGGGAT+GGG | - | chr1.2:4337506-4337525 | MS.gene044061:CDS | 65.0% | |
GGGGCGAAGTCAACACCAGG+TGG | + | chr1.2:4336868-4336887 | None:intergenic | 65.0% | |
CCTATGGGGGGCTGGGGATG+GGG | - | chr1.2:4337507-4337526 | MS.gene044061:CDS | 70.0% | |
CCCCATCCCCAGCCCCCCAT+AGG | + | chr1.2:4337510-4337529 | None:intergenic | 75.0% | |
! | TGGGGGGCTGGGGATGGGGC+TGG | - | chr1.2:4337511-4337530 | MS.gene044061:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 4336853 | 4338177 | 4336853 | ID=MS.gene044061 |
chr1.2 | mRNA | 4336853 | 4338177 | 4336853 | ID=MS.gene044061.t1;Parent=MS.gene044061 |
chr1.2 | exon | 4337767 | 4338177 | 4337767 | ID=MS.gene044061.t1.exon1;Parent=MS.gene044061.t1 |
chr1.2 | CDS | 4337767 | 4338177 | 4337767 | ID=cds.MS.gene044061.t1;Parent=MS.gene044061.t1 |
chr1.2 | exon | 4337433 | 4337576 | 4337433 | ID=MS.gene044061.t1.exon2;Parent=MS.gene044061.t1 |
chr1.2 | CDS | 4337433 | 4337576 | 4337433 | ID=cds.MS.gene044061.t1;Parent=MS.gene044061.t1 |
chr1.2 | exon | 4336853 | 4336969 | 4336853 | ID=MS.gene044061.t1.exon3;Parent=MS.gene044061.t1 |
chr1.2 | CDS | 4336853 | 4336969 | 4336853 | ID=cds.MS.gene044061.t1;Parent=MS.gene044061.t1 |
Gene Sequence |
Protein sequence |