Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044064.t1 | XP_003589158.1 | 98.3 | 236 | 4 | 0 | 1 | 236 | 1 | 236 | 3.60E-130 | 474.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044064.t1 | Q6X7J9 | 52.9 | 259 | 91 | 9 | 1 | 236 | 1 | 251 | 2.3e-56 | 220.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044064.t1 | G7I2E0 | 98.3 | 236 | 4 | 0 | 1 | 236 | 1 | 236 | 2.6e-130 | 474.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene044064.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044064.t1 | MTR_1g019130 | 98.305 | 236 | 4 | 0 | 1 | 236 | 1 | 236 | 1.34e-175 | 482 |
MS.gene044064.t1 | MTR_1g019130 | 97.861 | 187 | 4 | 0 | 1 | 187 | 1 | 187 | 1.55e-135 | 380 |
MS.gene044064.t1 | MTR_8g107210 | 45.255 | 137 | 69 | 1 | 22 | 152 | 22 | 158 | 2.87e-29 | 112 |
MS.gene044064.t1 | MTR_7g060630 | 71.642 | 67 | 19 | 0 | 86 | 152 | 4 | 70 | 7.40e-29 | 108 |
MS.gene044064.t1 | MTR_4g084550 | 68.750 | 64 | 20 | 0 | 89 | 152 | 63 | 126 | 1.77e-26 | 101 |
MS.gene044064.t1 | MTR_4g063735 | 36.932 | 176 | 81 | 4 | 90 | 235 | 25 | 200 | 2.33e-26 | 103 |
MS.gene044064.t1 | MTR_5g081990 | 65.152 | 66 | 23 | 0 | 90 | 155 | 33 | 98 | 1.14e-25 | 99.4 |
MS.gene044064.t1 | MTR_5g021930 | 64.062 | 64 | 22 | 1 | 89 | 151 | 29 | 92 | 1.54e-22 | 94.0 |
MS.gene044064.t1 | MTR_3g088485 | 40.146 | 137 | 60 | 2 | 22 | 152 | 22 | 142 | 8.33e-22 | 88.6 |
MS.gene044064.t1 | MTR_8g095580 | 76.923 | 52 | 12 | 0 | 101 | 152 | 93 | 144 | 3.55e-21 | 87.0 |
MS.gene044064.t1 | MTR_2g015000 | 35.577 | 104 | 55 | 1 | 49 | 152 | 26 | 117 | 5.00e-14 | 71.2 |
MS.gene044064.t1 | MTR_7g025010 | 46.774 | 62 | 33 | 0 | 90 | 151 | 47 | 108 | 2.79e-13 | 68.9 |
MS.gene044064.t1 | MTR_4g088070 | 37.778 | 90 | 44 | 1 | 61 | 150 | 12 | 89 | 2.25e-12 | 66.2 |
MS.gene044064.t1 | MTR_3g115620 | 39.474 | 76 | 46 | 0 | 90 | 165 | 82 | 157 | 4.15e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044064.t1 | AT1G46480 | 52.896 | 259 | 91 | 9 | 1 | 236 | 1 | 251 | 1.58e-72 | 221 |
MS.gene044064.t1 | AT1G46480 | 59.067 | 193 | 60 | 7 | 1 | 182 | 1 | 185 | 2.95e-63 | 196 |
MS.gene044064.t1 | AT3G18010 | 42.857 | 147 | 74 | 2 | 6 | 152 | 2 | 138 | 5.96e-30 | 114 |
MS.gene044064.t1 | AT3G11260 | 56.818 | 88 | 33 | 1 | 87 | 169 | 16 | 103 | 1.21e-27 | 104 |
MS.gene044064.t1 | AT5G59340 | 61.333 | 75 | 29 | 0 | 78 | 152 | 2 | 76 | 5.60e-27 | 104 |
MS.gene044064.t1 | AT2G28610 | 68.182 | 66 | 21 | 0 | 87 | 152 | 5 | 70 | 9.58e-27 | 103 |
MS.gene044064.t1 | AT5G05770 | 63.077 | 65 | 24 | 0 | 90 | 154 | 29 | 93 | 1.68e-24 | 94.4 |
MS.gene044064.t1 | AT2G17950 | 51.765 | 85 | 40 | 1 | 89 | 172 | 37 | 121 | 1.02e-23 | 96.7 |
MS.gene044064.t1 | AT2G01500 | 66.667 | 63 | 19 | 1 | 84 | 144 | 53 | 115 | 2.02e-21 | 90.1 |
MS.gene044064.t1 | AT2G33880 | 38.614 | 101 | 52 | 1 | 49 | 149 | 24 | 114 | 4.34e-14 | 71.2 |
MS.gene044064.t1 | AT2G33880 | 38.614 | 101 | 52 | 1 | 49 | 149 | 24 | 114 | 4.61e-14 | 70.9 |
MS.gene044064.t1 | AT1G20700 | 47.541 | 61 | 32 | 0 | 90 | 150 | 33 | 93 | 2.65e-13 | 65.9 |
MS.gene044064.t1 | AT5G45980 | 46.774 | 62 | 33 | 0 | 90 | 151 | 55 | 116 | 4.88e-13 | 67.8 |
MS.gene044064.t1 | AT1G20710 | 38.462 | 91 | 44 | 1 | 97 | 187 | 86 | 164 | 6.39e-13 | 65.9 |
MS.gene044064.t1 | AT1G20700 | 47.541 | 61 | 32 | 0 | 90 | 150 | 95 | 155 | 8.99e-13 | 65.5 |
MS.gene044064.t1 | AT1G20700 | 47.541 | 61 | 32 | 0 | 90 | 150 | 95 | 155 | 1.07e-12 | 65.5 |
MS.gene044064.t1 | AT4G35550 | 47.541 | 61 | 32 | 0 | 90 | 150 | 99 | 159 | 1.13e-11 | 63.2 |
Find 60 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATTCACACGTGGATTT+TGG | 0.121803 | 1.2:-4365157 | MS.gene044064:CDS |
TCTCGCGTGCTTTGTGGTTT+TGG | 0.203041 | 1.2:+4364324 | None:intergenic |
AAACTCCTTCATCTGCCTTC+TGG | 0.237007 | 1.2:+4363789 | None:intergenic |
AACTCCTTCATCTGCCTTCT+GGG | 0.285945 | 1.2:+4363790 | None:intergenic |
CAACTTTGGACACCCCAAAA+AGG | 0.296385 | 1.2:-4364205 | MS.gene044064:CDS |
ACTAATTCTAGGAGCACTTT+CGG | 0.300053 | 1.2:+4365001 | None:intergenic |
TGTTCTATTTGTTGTGCATT+TGG | 0.303542 | 1.2:+4364407 | None:intergenic |
CTAATTCTAGGAGCACTTTC+GGG | 0.314910 | 1.2:+4365002 | None:intergenic |
ACAAGAACAAATAGGAATAT+TGG | 0.328145 | 1.2:-4364459 | MS.gene044064:CDS |
GAGGAAGAAAGACTAATTCT+AGG | 0.342909 | 1.2:+4364990 | None:intergenic |
GGATTCCACCTTGTCCCTCC+TGG | 0.366142 | 1.2:+4364485 | None:intergenic |
ATCTGCCTTCTGGGTGTAAT+GGG | 0.376276 | 1.2:+4363799 | None:intergenic |
CTTTAGTACTATTACAACTT+TGG | 0.384910 | 1.2:-4364219 | MS.gene044064:CDS |
CATCTGCCTTCTGGGTGTAA+TGG | 0.398760 | 1.2:+4363798 | None:intergenic |
ATTCCTATTTGTTCTTGTGT+TGG | 0.415008 | 1.2:+4364464 | None:intergenic |
AATCCAACACAAGAACAAAT+AGG | 0.426122 | 1.2:-4364467 | MS.gene044064:CDS |
TTCTCTTCCAAGTACTCAAA+TGG | 0.427494 | 1.2:+4363870 | None:intergenic |
TTTGTCTCTCGCGTGCTTTG+TGG | 0.448508 | 1.2:+4364318 | None:intergenic |
TAGGTTGAAACGCATATTCC+AGG | 0.450427 | 1.2:-4364503 | MS.gene044064:CDS |
TCCACCTTCACCGCAAAGCC+AGG | 0.461999 | 1.2:-4364949 | MS.gene044064:intron |
GAGTTGGCCATTTGAGTACT+TGG | 0.464745 | 1.2:-4363877 | MS.gene044064:CDS |
GGTGTTAGAAGTAACATTAT+CGG | 0.465029 | 1.2:+4365061 | None:intergenic |
CACAGACACAAGTGTGGTGG+TGG | 0.469900 | 1.2:+4364250 | None:intergenic |
CAAAGTTGTAATAGTACTAA+AGG | 0.472738 | 1.2:+4364220 | None:intergenic |
AGCAAGTACGGTAAAATTGA+AGG | 0.477134 | 1.2:-4364368 | MS.gene044064:CDS |
CAACTCCTACTCTTCTTCAA+TGG | 0.501838 | 1.2:+4363894 | None:intergenic |
AGTGTGGTGGTGGGAGTTCG+AGG | 0.518160 | 1.2:+4364260 | None:intergenic |
CATGAACCTTCCCTCACACT+TGG | 0.520457 | 1.2:-4365131 | MS.gene044064:CDS |
TGAACCTGGCTTTGCGGTGA+AGG | 0.521265 | 1.2:+4364945 | None:intergenic |
GTTGTAATAGTACTAAAGGT+GGG | 0.528602 | 1.2:+4364224 | None:intergenic |
TGAGATCAAAAGAAAGAGAA+GGG | 0.531578 | 1.2:+4365039 | None:intergenic |
AGTATATGAACCTGGCTTTG+CGG | 0.544738 | 1.2:+4364939 | None:intergenic |
ATAGTCCATTGAAGAAGAGT+AGG | 0.545832 | 1.2:-4363899 | MS.gene044064:CDS |
AAGCAGAAACGTAACAGTCT+TGG | 0.547628 | 1.2:-4364296 | MS.gene044064:CDS |
ATCTTTCTTGTTATCATCAG+AGG | 0.556963 | 1.2:+4364971 | None:intergenic |
ACAGTTCAACTTAGCAAGTA+CGG | 0.562866 | 1.2:-4364380 | MS.gene044064:CDS |
CGCATATTCCAGGAGGGACA+AGG | 0.565252 | 1.2:-4364493 | MS.gene044064:CDS |
TACACCCAGAAGGCAGATGA+AGG | 0.566613 | 1.2:-4363794 | None:intergenic |
GTGGGAGTTCGAGGACTATG+AGG | 0.567688 | 1.2:+4364269 | None:intergenic |
TTGGTCAATGTGCAAAGTAG+AGG | 0.568050 | 1.2:-4363844 | MS.gene044064:CDS |
TTGAGATCAAAAGAAAGAGA+AGG | 0.574637 | 1.2:+4365038 | None:intergenic |
AGTTGTAATAGTACTAAAGG+TGG | 0.581733 | 1.2:+4364223 | None:intergenic |
AACGCTTGCAACCAAGTGTG+AGG | 0.582297 | 1.2:+4365120 | None:intergenic |
GCAAGTACGGTAAAATTGAA+GGG | 0.588273 | 1.2:-4364367 | MS.gene044064:CDS |
CATTGAAGAAGAGTAGGAGT+TGG | 0.590517 | 1.2:-4363893 | MS.gene044064:CDS |
ACCTGGCTTTGCGGTGAAGG+TGG | 0.590968 | 1.2:+4364948 | None:intergenic |
TGTAATAGTACTAAAGGTGG+GGG | 0.603492 | 1.2:+4364226 | None:intergenic |
TTGTAATAGTACTAAAGGTG+GGG | 0.606911 | 1.2:+4364225 | None:intergenic |
TTGGAGATGTTATACAGAGG+TGG | 0.611718 | 1.2:-4364440 | MS.gene044064:CDS |
GAGTTCGAGGACTATGAGGA+AGG | 0.633348 | 1.2:+4364273 | None:intergenic |
ACGCTTGCAACCAAGTGTGA+GGG | 0.656705 | 1.2:+4365121 | None:intergenic |
TTGAAACGCATATTCCAGGA+GGG | 0.657126 | 1.2:-4364499 | MS.gene044064:CDS |
ACAGACACAAGTGTGGTGGT+GGG | 0.659851 | 1.2:+4364251 | None:intergenic |
GGACACAGACACAAGTGTGG+TGG | 0.666759 | 1.2:+4364247 | None:intergenic |
GAGATCAAAAGAAAGAGAAG+GGG | 0.671823 | 1.2:+4365040 | None:intergenic |
TTGCAACCAAGTGTGAGGGA+AGG | 0.674259 | 1.2:+4365125 | None:intergenic |
GTTGAAACGCATATTCCAGG+AGG | 0.708848 | 1.2:-4364500 | MS.gene044064:CDS |
ATATTGGAGATGTTATACAG+AGG | 0.712720 | 1.2:-4364443 | MS.gene044064:CDS |
AAAGTGCATCAATTCACACG+TGG | 0.742454 | 1.2:-4365164 | MS.gene044064:CDS |
ATATTCCAGGAGGGACAAGG+TGG | 0.756182 | 1.2:-4364490 | MS.gene044064:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAATACTAATAAAGTATTT+TGG | - | chr1.2:4364227-4364246 | MS.gene044064:CDS | 10.0% |
!! | ACAGACTTAATTAAAAAAAA+TGG | + | chr1.2:4364072-4364091 | None:intergenic | 15.0% |
!! | AATACTATAATCTTGTTACT+AGG | - | chr1.2:4364969-4364988 | MS.gene044064:CDS | 20.0% |
!! | AATTAGTATACTATTGTTCA+TGG | + | chr1.2:4364947-4364966 | None:intergenic | 20.0% |
!! | ATTAACTTCATGTAACATAT+AGG | - | chr1.2:4364184-4364203 | MS.gene044064:intron | 20.0% |
!! | TCTATTATTTGTGTATGTAT+AGG | - | chr1.2:4364442-4364461 | MS.gene044064:CDS | 20.0% |
!! | TTAACTTCATGTAACATATA+GGG | - | chr1.2:4364185-4364204 | MS.gene044064:intron | 20.0% |
!!! | GTGTTATTAGAAGAAATTTT+AGG | + | chr1.2:4363884-4363903 | None:intergenic | 20.0% |
!!! | TCGAATATGTTACATTTTTT+TGG | - | chr1.2:4365010-4365029 | MS.gene044064:CDS | 20.0% |
!!! | TTGTTCATGGTTTTAAATTA+CGG | + | chr1.2:4364934-4364953 | None:intergenic | 20.0% |
! | ACAAGAACAAATAGGAATAT+TGG | - | chr1.2:4364505-4364524 | MS.gene044064:intron | 25.0% |
! | CAAAGTTGTAATAGTACTAA+AGG | + | chr1.2:4364747-4364766 | None:intergenic | 25.0% |
! | CTTTAGTACTATTACAACTT+TGG | - | chr1.2:4364745-4364764 | MS.gene044064:intron | 25.0% |
! | TACATCTGATAACTGAAATA+CGG | + | chr1.2:4364272-4364291 | None:intergenic | 25.0% |
! | TCAACTTAAGCTATATATTG+TGG | - | chr1.2:4364805-4364824 | MS.gene044064:intron | 25.0% |
!! | AATATGAACATACCCTTTTT+GGG | + | chr1.2:4364775-4364794 | None:intergenic | 25.0% |
!! | CGACAATATAAAGGATTTTA+AGG | + | chr1.2:4364853-4364872 | None:intergenic | 25.0% |
!!! | ACTAATAAAGTATTTTGGTC+CGG | - | chr1.2:4364232-4364251 | MS.gene044064:CDS | 25.0% |
!!! | TATGTTACATTTTTTTGGAC+AGG | - | chr1.2:4365015-4365034 | MS.gene044064:CDS | 25.0% |
!!! | TCGTTTAAAAGCTTTTGATT+TGG | - | chr1.2:4364392-4364411 | MS.gene044064:CDS | 25.0% |
!!! | TTTTTGATTAAAAGGAACGT+AGG | - | chr1.2:4364907-4364926 | MS.gene044064:intron | 25.0% |
AAGGGAAAAATGTGTTCTAT+TGG | - | chr1.2:4364615-4364634 | MS.gene044064:intron | 30.0% | |
AATCCAACACAAGAACAAAT+AGG | - | chr1.2:4364497-4364516 | MS.gene044064:CDS | 30.0% | |
AATTATACTACTCTACTGCA+TGG | + | chr1.2:4364099-4364118 | None:intergenic | 30.0% | |
AGTACTTGGAAGAGAAAAAT+TGG | - | chr1.2:4365101-4365120 | MS.gene044064:CDS | 30.0% | |
AGTTGTAATAGTACTAAAGG+TGG | + | chr1.2:4364744-4364763 | None:intergenic | 30.0% | |
ATATTGGAGATGTTATACAG+AGG | - | chr1.2:4364521-4364540 | MS.gene044064:intron | 30.0% | |
ATTCCTATTTGTTCTTGTGT+TGG | + | chr1.2:4364503-4364522 | None:intergenic | 30.0% | |
GGTGTTAGAAGTAACATTAT+CGG | + | chr1.2:4363906-4363925 | None:intergenic | 30.0% | |
GTTGTAATAGTACTAAAGGT+GGG | + | chr1.2:4364743-4364762 | None:intergenic | 30.0% | |
TGAGATCAAAAGAAAGAGAA+GGG | + | chr1.2:4363928-4363947 | None:intergenic | 30.0% | |
TTGAGATCAAAAGAAAGAGA+AGG | + | chr1.2:4363929-4363948 | None:intergenic | 30.0% | |
TTGTAATAGTACTAAAGGTG+GGG | + | chr1.2:4364742-4364761 | None:intergenic | 30.0% | |
! | ATATGAACATACCCTTTTTG+GGG | + | chr1.2:4364774-4364793 | None:intergenic | 30.0% |
! | ATCTTTCTTGTTATCATCAG+AGG | + | chr1.2:4363996-4364015 | None:intergenic | 30.0% |
! | GAATATGAACATACCCTTTT+TGG | + | chr1.2:4364776-4364795 | None:intergenic | 30.0% |
! | TAGTTGCATCGACAATATAA+AGG | + | chr1.2:4364862-4364881 | None:intergenic | 30.0% |
!! | TGTTCTATTTGTTGTGCATT+TGG | + | chr1.2:4364560-4364579 | None:intergenic | 30.0% |
!!! | CTAATAAAGTATTTTGGTCC+GGG | - | chr1.2:4364233-4364252 | MS.gene044064:CDS | 30.0% |
ACAGTTCAACTTAGCAAGTA+CGG | - | chr1.2:4364584-4364603 | MS.gene044064:intron | 35.0% | |
AGCAAGTACGGTAAAATTGA+AGG | - | chr1.2:4364596-4364615 | MS.gene044064:intron | 35.0% | |
ATAGTCCATTGAAGAAGAGT+AGG | - | chr1.2:4365065-4365084 | MS.gene044064:CDS | 35.0% | |
GAGATCAAAAGAAAGAGAAG+GGG | + | chr1.2:4363927-4363946 | None:intergenic | 35.0% | |
GAGGAAGAAAGACTAATTCT+AGG | + | chr1.2:4363977-4363996 | None:intergenic | 35.0% | |
GCAAGTACGGTAAAATTGAA+GGG | - | chr1.2:4364597-4364616 | MS.gene044064:intron | 35.0% | |
TAGAGCTTAGTATATGAACC+TGG | + | chr1.2:4364036-4364055 | None:intergenic | 35.0% | |
TGTAATAGTACTAAAGGTGG+GGG | + | chr1.2:4364741-4364760 | None:intergenic | 35.0% | |
TTCTCTTCCAAGTACTCAAA+TGG | + | chr1.2:4365097-4365116 | None:intergenic | 35.0% | |
! | ATCAATTCACACGTGGATTT+TGG | - | chr1.2:4363807-4363826 | MS.gene044064:CDS | 35.0% |
! | TACGGTTCAACAATTTTTCC+CGG | + | chr1.2:4364254-4364273 | None:intergenic | 35.0% |
! | TCAATTCACACGTGGATTTT+GGG | - | chr1.2:4363808-4363827 | MS.gene044064:CDS | 35.0% |
!! | ACTAATTCTAGGAGCACTTT+CGG | + | chr1.2:4363966-4363985 | None:intergenic | 35.0% |
!! | GAAGAAATTTTAGGTGCAAG+AGG | + | chr1.2:4363875-4363894 | None:intergenic | 35.0% |
AAAGTGCATCAATTCACACG+TGG | - | chr1.2:4363800-4363819 | MS.gene044064:CDS | 40.0% | |
AACTTTGGACACCCCAAAAA+GGG | - | chr1.2:4364760-4364779 | MS.gene044064:intron | 40.0% | |
AAGCAGAAACGTAACAGTCT+TGG | - | chr1.2:4364668-4364687 | MS.gene044064:intron | 40.0% | |
AGTAACTCTCGAGTCTCATA+TGG | + | chr1.2:4364343-4364362 | None:intergenic | 40.0% | |
ATACTACTCTACTGCATGGA+TGG | + | chr1.2:4364095-4364114 | None:intergenic | 40.0% | |
CAACTCCTACTCTTCTTCAA+TGG | + | chr1.2:4365073-4365092 | None:intergenic | 40.0% | |
CATTGAAGAAGAGTAGGAGT+TGG | - | chr1.2:4365071-4365090 | MS.gene044064:CDS | 40.0% | |
CGAGTCTCATATGGAAAAAG+AGG | + | chr1.2:4364334-4364353 | None:intergenic | 40.0% | |
TGTCGATGCAACTATAGTCT+TGG | - | chr1.2:4364868-4364887 | MS.gene044064:intron | 40.0% | |
TTGAAACGCATATTCCAGGA+GGG | - | chr1.2:4364465-4364484 | MS.gene044064:CDS | 40.0% | |
TTGGAGATGTTATACAGAGG+TGG | - | chr1.2:4364524-4364543 | MS.gene044064:intron | 40.0% | |
TTGGTCAATGTGCAAAGTAG+AGG | - | chr1.2:4365120-4365139 | MS.gene044064:CDS | 40.0% | |
! | TAGGTTGAAACGCATATTCC+AGG | - | chr1.2:4364461-4364480 | MS.gene044064:CDS | 40.0% |
! | TTTTGGACAGGTGCAAGTAA+TGG | - | chr1.2:4365027-4365046 | MS.gene044064:CDS | 40.0% |
!! | AGTATATGAACCTGGCTTTG+CGG | + | chr1.2:4364028-4364047 | None:intergenic | 40.0% |
!! | CTAATTCTAGGAGCACTTTC+GGG | + | chr1.2:4363965-4363984 | None:intergenic | 40.0% |
AGGTCTCTGCAACGACATTT+CGG | + | chr1.2:4364833-4364852 | None:intergenic | 45.0% | |
ATCTGCCTTCTGGGTGTAAT+GGG | + | chr1.2:4365168-4365187 | None:intergenic | 45.0% | |
CAACTTTGGACACCCCAAAA+AGG | - | chr1.2:4364759-4364778 | MS.gene044064:intron | 45.0% | |
GAGTTGGCCATTTGAGTACT+TGG | - | chr1.2:4365087-4365106 | MS.gene044064:CDS | 45.0% | |
GTTGAAACGCATATTCCAGG+AGG | - | chr1.2:4364464-4364483 | MS.gene044064:CDS | 45.0% | |
! | CTTTTCCCATTACACCCAGA+AGG | - | chr1.2:4365160-4365179 | MS.gene044064:CDS | 45.0% |
!! | ATCAAAAAAAAAAAAAATTA+CGG | + | chr1.2:4364895-4364914 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTTGATTAAA+AGG | - | chr1.2:4364899-4364918 | MS.gene044064:intron | 5.0% |
AACGCTTGCAACCAAGTGTG+AGG | + | chr1.2:4363847-4363866 | None:intergenic | 50.0% | |
ACAGACACAAGTGTGGTGGT+GGG | + | chr1.2:4364716-4364735 | None:intergenic | 50.0% | |
ACGCTTGCAACCAAGTGTGA+GGG | + | chr1.2:4363846-4363865 | None:intergenic | 50.0% | |
ATATTCCAGGAGGGACAAGG+TGG | - | chr1.2:4364474-4364493 | MS.gene044064:CDS | 50.0% | |
CATCTGCCTTCTGGGTGTAA+TGG | + | chr1.2:4365169-4365188 | None:intergenic | 50.0% | |
CATGAACCTTCCCTCACACT+TGG | - | chr1.2:4363833-4363852 | MS.gene044064:CDS | 50.0% | |
GAGTTCGAGGACTATGAGGA+AGG | + | chr1.2:4364694-4364713 | None:intergenic | 50.0% | |
TTGCAACCAAGTGTGAGGGA+AGG | + | chr1.2:4363842-4363861 | None:intergenic | 50.0% | |
TTTGTCTCTCGCGTGCTTTG+TGG | + | chr1.2:4364649-4364668 | None:intergenic | 50.0% | |
! | TCTCGCGTGCTTTGTGGTTT+TGG | + | chr1.2:4364643-4364662 | None:intergenic | 50.0% |
CACAGACACAAGTGTGGTGG+TGG | + | chr1.2:4364717-4364736 | None:intergenic | 55.0% | |
CGCATATTCCAGGAGGGACA+AGG | - | chr1.2:4364471-4364490 | MS.gene044064:CDS | 55.0% | |
GGACACAGACACAAGTGTGG+TGG | + | chr1.2:4364720-4364739 | None:intergenic | 55.0% | |
GTGGGAGTTCGAGGACTATG+AGG | + | chr1.2:4364698-4364717 | None:intergenic | 55.0% | |
!! | TGAACCTGGCTTTGCGGTGA+AGG | + | chr1.2:4364022-4364041 | None:intergenic | 55.0% |
GGATTCCACCTTGTCCCTCC+TGG | + | chr1.2:4364482-4364501 | None:intergenic | 60.0% | |
GGGGGACACAGACACAAGTG+TGG | + | chr1.2:4364723-4364742 | None:intergenic | 60.0% | |
TCCACCTTCACCGCAAAGCC+AGG | - | chr1.2:4364015-4364034 | MS.gene044064:intron | 60.0% | |
!! | ACCTGGCTTTGCGGTGAAGG+TGG | + | chr1.2:4364019-4364038 | None:intergenic | 60.0% |
!! | AGTGTGGTGGTGGGAGTTCG+AGG | + | chr1.2:4364707-4364726 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 4363797 | 4365189 | 4363797 | ID=MS.gene044064 |
chr1.2 | mRNA | 4363797 | 4365189 | 4363797 | ID=MS.gene044064.t1;Parent=MS.gene044064 |
chr1.2 | exon | 4364950 | 4365189 | 4364950 | ID=MS.gene044064.t1.exon1;Parent=MS.gene044064.t1 |
chr1.2 | CDS | 4364950 | 4365189 | 4364950 | ID=cds.MS.gene044064.t1;Parent=MS.gene044064.t1 |
chr1.2 | exon | 4364205 | 4364522 | 4364205 | ID=MS.gene044064.t1.exon2;Parent=MS.gene044064.t1 |
chr1.2 | CDS | 4364205 | 4364522 | 4364205 | ID=cds.MS.gene044064.t1;Parent=MS.gene044064.t1 |
chr1.2 | exon | 4363797 | 4363949 | 4363797 | ID=MS.gene044064.t1.exon3;Parent=MS.gene044064.t1 |
chr1.2 | CDS | 4363797 | 4363949 | 4363797 | ID=cds.MS.gene044064.t1;Parent=MS.gene044064.t1 |
Gene Sequence |
Protein sequence |