Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044065.t1 | XP_003589157.1 | 96.7 | 396 | 13 | 0 | 127 | 522 | 17 | 412 | 5.80E-213 | 750.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044065.t1 | Q56XU4 | 41.9 | 422 | 193 | 14 | 127 | 519 | 15 | 413 | 3.7e-67 | 257.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044065.t1 | G7I2D9 | 96.7 | 396 | 13 | 0 | 127 | 522 | 17 | 412 | 4.2e-213 | 750.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene044065.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044065.t1 | MTR_1g019120 | 96.717 | 396 | 13 | 0 | 127 | 522 | 17 | 412 | 0.0 | 788 |
| MS.gene044065.t1 | MTR_1g019120 | 98.316 | 297 | 5 | 0 | 226 | 522 | 1 | 297 | 0.0 | 603 |
| MS.gene044065.t1 | MTR_8g076080 | 36.759 | 253 | 121 | 6 | 126 | 340 | 17 | 268 | 1.34e-30 | 125 |
| MS.gene044065.t1 | MTR_8g076080 | 43.284 | 134 | 62 | 5 | 384 | 516 | 437 | 557 | 9.50e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044065.t1 | AT1G19860 | 42.823 | 418 | 187 | 15 | 131 | 519 | 21 | 415 | 5.51e-84 | 266 |
| MS.gene044065.t1 | AT1G19860 | 42.417 | 422 | 191 | 15 | 127 | 519 | 15 | 413 | 5.54e-84 | 266 |
| MS.gene044065.t1 | AT5G66270 | 30.667 | 225 | 118 | 6 | 130 | 349 | 20 | 211 | 1.34e-19 | 92.0 |
| MS.gene044065.t1 | AT3G51180 | 32.906 | 234 | 120 | 8 | 127 | 335 | 19 | 240 | 9.82e-18 | 86.7 |
Find 111 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTTCAACAGGCGTAAT+TGG | 0.151616 | 1.2:-4409211 | None:intergenic |
| TTAGATGGTAAATGGTTTAA+TGG | 0.231185 | 1.2:+4406138 | MS.gene044065:CDS |
| AGAATATTATTGAGTAATTC+AGG | 0.252544 | 1.2:-4409379 | None:intergenic |
| TACATTATCTCCTGGTATAT+TGG | 0.266652 | 1.2:+4409249 | MS.gene044065:CDS |
| GGTGGTCTCAACTTGATTAA+AGG | 0.270362 | 1.2:-4409512 | None:intergenic |
| TCGTCAACATCCACTGAAAT+AGG | 0.270410 | 1.2:-4409154 | None:intergenic |
| TTGCAGGTTCTGACGATTAC+TGG | 0.273869 | 1.2:-4409755 | None:intergenic |
| GGATTAGATTAGATGGTAAA+TGG | 0.279644 | 1.2:+4406130 | MS.gene044065:CDS |
| TCAATAGCTGAACTGATTTC+AGG | 0.296986 | 1.2:-4409631 | None:intergenic |
| GACGATTCCCATTACATTGA+TGG | 0.304640 | 1.2:+4409172 | MS.gene044065:CDS |
| TGATGAGGGATTACCTTGTT+GGG | 0.330497 | 1.2:-4409923 | None:intergenic |
| CTGATGAGGGATTACCTTGT+TGG | 0.331743 | 1.2:-4409924 | None:intergenic |
| TAGTTCAAAGAGAATGAAAA+TGG | 0.338707 | 1.2:+4409954 | MS.gene044065:CDS |
| AAGCGAAAAGATCAGATATT+CGG | 0.346105 | 1.2:-4406938 | None:intergenic |
| CCAGCTAATAACTGGTATTT+CGG | 0.350750 | 1.2:-4408539 | None:intergenic |
| GTTCATTGGATTAGATTAGA+TGG | 0.355301 | 1.2:+4406123 | MS.gene044065:CDS |
| TTTGTTGAAGGGACCTCAAC+AGG | 0.365719 | 1.2:-4409661 | None:intergenic |
| CATAGTTTGATAATGGTTGC+AGG | 0.368385 | 1.2:-4409771 | None:intergenic |
| GTGGTCTCAACTTGATTAAA+GGG | 0.372939 | 1.2:-4409511 | None:intergenic |
| TCAACTTGATTAAAGGGATT+AGG | 0.374101 | 1.2:-4409505 | None:intergenic |
| ACCAACTTCTCAATCACTTC+CGG | 0.375302 | 1.2:-4409409 | None:intergenic |
| CAACAAGGTAATCCCTCATC+AGG | 0.390234 | 1.2:+4409925 | MS.gene044065:CDS |
| AACATGACCATCAATGTAAT+GGG | 0.405673 | 1.2:-4409179 | None:intergenic |
| GGTTTAATCCAGCTAATAAC+TGG | 0.414260 | 1.2:-4408547 | None:intergenic |
| CATCTTCAACAGGCGTAATT+GGG | 0.418349 | 1.2:-4409210 | None:intergenic |
| AGGAATCTCCTTCACAAGTT+GGG | 0.421056 | 1.2:+4408386 | MS.gene044065:CDS |
| AGCGAAAAGATCAGATATTC+GGG | 0.421407 | 1.2:-4406937 | None:intergenic |
| CCGAAATACCAGTTATTAGC+TGG | 0.425996 | 1.2:+4408539 | MS.gene044065:CDS |
| TCTTCCTATACTCACACAAC+TGG | 0.427574 | 1.2:+4409565 | MS.gene044065:CDS |
| CAACATGACCATCAATGTAA+TGG | 0.430043 | 1.2:-4409180 | None:intergenic |
| TGACGATTACTGGAGGAGTA+TGG | 0.441979 | 1.2:-4409745 | None:intergenic |
| TCCGGAAGTGATTGAGAAGT+TGG | 0.446609 | 1.2:+4409408 | MS.gene044065:CDS |
| CCAATTACGCCTGTTGAAGA+TGG | 0.451403 | 1.2:+4409211 | MS.gene044065:CDS |
| CCCACATCCCCATCTTCAAC+AGG | 0.453414 | 1.2:-4409220 | None:intergenic |
| AGCTCCATTCCGACATCCCC+TGG | 0.455307 | 1.2:-4409866 | None:intergenic |
| GAGGAATCTCCTTCACAAGT+TGG | 0.461742 | 1.2:+4408385 | MS.gene044065:CDS |
| TGGCCCTCCCATGTTGGAAG+TGG | 0.472480 | 1.2:-4407203 | None:intergenic |
| CTCACATGGCAAGTGGTGGC+TGG | 0.478796 | 1.2:+4408947 | MS.gene044065:CDS |
| CAATTACGCCTGTTGAAGAT+GGG | 0.490357 | 1.2:+4409212 | MS.gene044065:CDS |
| CAATAATATTCTCAACAATC+CGG | 0.493677 | 1.2:+4409390 | MS.gene044065:CDS |
| TCCGTGGATAAATAGCTTCA+AGG | 0.494743 | 1.2:-4409018 | None:intergenic |
| TTGTTGCCTCAAGGAGAAGC+TGG | 0.494944 | 1.2:+4408448 | MS.gene044065:CDS |
| ACTGTATCATAGTTTGATAA+TGG | 0.503276 | 1.2:-4409778 | None:intergenic |
| TTATCTCCTGGTATATTGGA+TGG | 0.518348 | 1.2:+4409253 | MS.gene044065:CDS |
| ATCTCAGCCACTTCCAACAT+GGG | 0.525224 | 1.2:+4407196 | MS.gene044065:CDS |
| TAGCTGGATTAAACCACCTA+AGG | 0.527680 | 1.2:+4408555 | MS.gene044065:CDS |
| GCATGAGTTCCCTCAAATCC+AGG | 0.528859 | 1.2:-4408490 | None:intergenic |
| AGACTCGTACTTTGGAGGAA+TGG | 0.532082 | 1.2:-4409047 | None:intergenic |
| CGCCAACTATGTCTACTCAA+TGG | 0.535931 | 1.2:+4409599 | MS.gene044065:CDS |
| AGAGAAGACTCGTACTTTGG+AGG | 0.538641 | 1.2:-4409052 | None:intergenic |
| TGTGTGAGTATAGGAAGAAG+TGG | 0.543096 | 1.2:-4409560 | None:intergenic |
| ACAAGGATGATATCTTTGCT+TGG | 0.550411 | 1.2:-4408429 | None:intergenic |
| CTGACTTGGCCCTCCCATGT+TGG | 0.550437 | 1.2:-4407209 | None:intergenic |
| GATGAGGGATTACCTTGTTG+GGG | 0.550606 | 1.2:-4409922 | None:intergenic |
| TTAATAGTTCCAGGGGATGT+CGG | 0.551000 | 1.2:+4409857 | MS.gene044065:CDS |
| ACCTCCAGTTGTGTGAGTAT+AGG | 0.554188 | 1.2:-4409569 | None:intergenic |
| GCCTGTTGAAGATGGGGATG+TGG | 0.558484 | 1.2:+4409219 | MS.gene044065:CDS |
| TGAACTATGCATCCCTGATG+AGG | 0.559066 | 1.2:-4409938 | None:intergenic |
| TGCCATTGAGTAGACATAGT+TGG | 0.560966 | 1.2:-4409601 | None:intergenic |
| GATCTCAGCCACTTCCAACA+TGG | 0.561348 | 1.2:+4407195 | MS.gene044065:CDS |
| GCACAGTATGCACAAAATAC+CGG | 0.562338 | 1.2:+4409454 | MS.gene044065:CDS |
| TGAAGATGGGGATGTGGGAG+CGG | 0.563372 | 1.2:+4409225 | MS.gene044065:CDS |
| CAGAAAATATCACACTGACT+TGG | 0.563490 | 1.2:-4407223 | None:intergenic |
| CTAATAACTGGTATTTCGGA+CGG | 0.563575 | 1.2:-4408535 | None:intergenic |
| GGTTAGATTATTCTTATCTG+AGG | 0.564458 | 1.2:+4408366 | MS.gene044065:intron |
| GAACTATGCATCCCTGATGA+GGG | 0.564645 | 1.2:-4409937 | None:intergenic |
| AGCTTCTCCTTGAGGCAACA+AGG | 0.565922 | 1.2:-4408446 | None:intergenic |
| TATTGATGCTACTCCTGTTG+AGG | 0.566975 | 1.2:+4409648 | MS.gene044065:CDS |
| GGAGCGGATACATTATCTCC+TGG | 0.567885 | 1.2:+4409241 | MS.gene044065:CDS |
| ACTTGATTAAAGGGATTAGG+AGG | 0.568417 | 1.2:-4409502 | None:intergenic |
| TGTCTACTCAATGGCATCGT+AGG | 0.571059 | 1.2:+4409608 | MS.gene044065:CDS |
| GCTGGTGCTTGCAGAAGTAT+CGG | 0.571164 | 1.2:+4407256 | MS.gene044065:CDS |
| AGTTCCAGGGGATGTCGGAA+TGG | 0.577472 | 1.2:+4409862 | MS.gene044065:CDS |
| GATATTTGATCAACATCAGA+GGG | 0.578943 | 1.2:+4408985 | MS.gene044065:CDS |
| GAATTCAACCCAACTTGTGA+AGG | 0.578955 | 1.2:-4408394 | None:intergenic |
| TCACACAACTGGAGGTCAGA+TGG | 0.580334 | 1.2:+4409576 | MS.gene044065:CDS |
| CACTGTTACGACTATGTCGA+TGG | 0.580449 | 1.2:+4409282 | MS.gene044065:CDS |
| AGGATGATATCTTTGCTTGG+AGG | 0.580593 | 1.2:-4408426 | None:intergenic |
| CAGATATTCGGGTTATGCAG+AGG | 0.581249 | 1.2:-4406926 | None:intergenic |
| TCCTTGAAGCTATTTATCCA+CGG | 0.582723 | 1.2:+4409017 | MS.gene044065:CDS |
| ATATCATCCTTGTTGCCTCA+AGG | 0.583248 | 1.2:+4408439 | MS.gene044065:CDS |
| TCGATGCAGTCCTATTTCAG+TGG | 0.588300 | 1.2:+4409144 | MS.gene044065:intron |
| CTGTTGCTCATGTGTTAGAC+CGG | 0.593663 | 1.2:+4406983 | MS.gene044065:CDS |
| AAAAGCATTTGATGAGGATG+TGG | 0.594665 | 1.2:-4409533 | None:intergenic |
| AAGAGCTTGATTCAGCAACA+TGG | 0.600253 | 1.2:+4409700 | MS.gene044065:CDS |
| GTATGAGCTACTGCTCTCGT+AGG | 0.603550 | 1.2:+4406181 | MS.gene044065:CDS |
| TCAGAACCAGCTTCTCCTTG+AGG | 0.604428 | 1.2:-4408454 | None:intergenic |
| TCCTATACTCACACAACTGG+AGG | 0.607401 | 1.2:+4409568 | MS.gene044065:CDS |
| GTGTTAGACCGGTGTTAGTG+TGG | 0.627094 | 1.2:+4406994 | MS.gene044065:CDS |
| CAGCCACTTCCAACATGGGA+GGG | 0.629186 | 1.2:+4407200 | MS.gene044065:CDS |
| TTTGAACCATCCAATATACC+AGG | 0.631062 | 1.2:-4409259 | None:intergenic |
| CCTGTTGAAGATGGGGATGT+GGG | 0.634741 | 1.2:+4409220 | MS.gene044065:CDS |
| ACTTGAAACCACACTAACAC+CGG | 0.637264 | 1.2:-4407002 | None:intergenic |
| GCTAGATCTCACATGGCAAG+TGG | 0.640415 | 1.2:+4408940 | MS.gene044065:CDS |
| GATACTTCTGCAAGCACCAG+CGG | 0.641670 | 1.2:-4407254 | None:intergenic |
| AAATGATGCATCATGCTGAA+AGG | 0.642980 | 1.2:-4409896 | None:intergenic |
| TCAGCCACTTCCAACATGGG+AGG | 0.643487 | 1.2:+4407199 | MS.gene044065:CDS |
| GCATCATTTCAGCCCCAACA+AGG | 0.644422 | 1.2:+4409910 | MS.gene044065:CDS |
| AGATATTTGATCAACATCAG+AGG | 0.644462 | 1.2:+4408984 | MS.gene044065:CDS |
| AGATCTCACATGGCAAGTGG+TGG | 0.645516 | 1.2:+4408943 | MS.gene044065:CDS |
| AGATCGTGCTAGATCTCACA+TGG | 0.650447 | 1.2:+4408933 | MS.gene044065:intron |
| TTAGTGAAGAGCAGTGAACA+TGG | 0.653142 | 1.2:+4409343 | MS.gene044065:CDS |
| AATTACGCCTGTTGAAGATG+GGG | 0.658485 | 1.2:+4409213 | MS.gene044065:CDS |
| AGCATTTGATGAGGATGTGG+TGG | 0.660304 | 1.2:-4409530 | None:intergenic |
| AACAAGGTAATCCCTCATCA+GGG | 0.662054 | 1.2:+4409926 | MS.gene044065:CDS |
| CAGGTTCTGACGATTACTGG+AGG | 0.674373 | 1.2:-4409752 | None:intergenic |
| GGAGGAATGGAAGATATCCG+TGG | 0.678525 | 1.2:-4409034 | None:intergenic |
| GGTGCTTGCAGAAGTATCGG+AGG | 0.700785 | 1.2:+4407259 | MS.gene044065:CDS |
| GAATTCGTATGAACAAAACA+AGG | 0.710285 | 1.2:-4406961 | None:intergenic |
| AGCTTGATTCAGCAACATGG+AGG | 0.714964 | 1.2:+4409703 | MS.gene044065:CDS |
| TGAGTTCCCTCAAATCCAGG+AGG | 0.756506 | 1.2:-4408487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAACTAATTCTAATA+TGG | - | chr1.2:4406360-4406379 | None:intergenic | 10.0% |
| !! | GATAATATTAATAATATATG+TGG | - | chr1.2:4407890-4407909 | None:intergenic | 10.0% |
| !! | TTTCTTATTCAAATTATTAT+GGG | - | chr1.2:4407699-4407718 | None:intergenic | 10.0% |
| !! | AAAAAAAGAAATATCAAACA+AGG | - | chr1.2:4409080-4409099 | None:intergenic | 15.0% |
| !! | CTTTCTTATTCAAATTATTA+TGG | - | chr1.2:4407700-4407719 | None:intergenic | 15.0% |
| !! | TAATATTTATATTTCAACGT+TGG | + | chr1.2:4408623-4408642 | MS.gene044065:intron | 15.0% |
| !!! | AAAAAAATAACATTAGTTTC+AGG | + | chr1.2:4406811-4406830 | MS.gene044065:intron | 15.0% |
| !!! | ATGTTATTTTTTTGGATTTT+TGG | - | chr1.2:4406804-4406823 | None:intergenic | 15.0% |
| !!! | TGAAACTAATGTTATTTTTT+TGG | - | chr1.2:4406812-4406831 | None:intergenic | 15.0% |
| !! | AACAGAATCAATAATTTAAG+AGG | + | chr1.2:4408264-4408283 | MS.gene044065:intron | 20.0% |
| !! | AATATTACTGAAGATTACTA+TGG | - | chr1.2:4408610-4408629 | None:intergenic | 20.0% |
| !! | ACTAATTTCCAATCATAAAA+AGG | - | chr1.2:4406462-4406481 | None:intergenic | 20.0% |
| !! | AGAATATTATTGAGTAATTC+AGG | - | chr1.2:4409382-4409401 | None:intergenic | 20.0% |
| !! | ATAACTCGAAAAGAAAAAAA+AGG | + | chr1.2:4408843-4408862 | MS.gene044065:intron | 20.0% |
| !! | ATTATGGGTAATCATAATAA+AGG | - | chr1.2:4407684-4407703 | None:intergenic | 20.0% |
| !! | GAACTATTAAAAAAGATACA+AGG | - | chr1.2:4409847-4409866 | None:intergenic | 20.0% |
| !! | GATTTCTTTAATTAAACTCA+CGG | - | chr1.2:4407031-4407050 | None:intergenic | 20.0% |
| !! | TAAAATATGACAGTAAAAGA+TGG | - | chr1.2:4407963-4407982 | None:intergenic | 20.0% |
| !! | TATAACTACAAAAATACCTT+AGG | - | chr1.2:4408574-4408593 | None:intergenic | 20.0% |
| !! | TATTTATTGTGCATTCAAAA+TGG | + | chr1.2:4407752-4407771 | MS.gene044065:intron | 20.0% |
| !! | TTTATGATTATTGTAGACTA+GGG | - | chr1.2:4407574-4407593 | None:intergenic | 20.0% |
| !!! | TATCTTTTTTAATAGTTCCA+GGG | + | chr1.2:4409849-4409868 | MS.gene044065:CDS | 20.0% |
| !!! | TTTTATGATTATTGTAGACT+AGG | - | chr1.2:4407575-4407594 | None:intergenic | 20.0% |
| ! | AAAACTAGTATTATCAATGG+TGG | - | chr1.2:4406650-4406669 | None:intergenic | 25.0% |
| ! | ACTGTATCATAGTTTGATAA+TGG | - | chr1.2:4409781-4409800 | None:intergenic | 25.0% |
| ! | ATCGAAAAATGCAACTAAAT+TGG | - | chr1.2:4406861-4406880 | None:intergenic | 25.0% |
| ! | ATGCTGAAGATATTTATCAA+AGG | - | chr1.2:4406318-4406337 | None:intergenic | 25.0% |
| ! | CAAAATGGCTATAAATATTC+TGG | + | chr1.2:4407767-4407786 | MS.gene044065:intron | 25.0% |
| ! | CAATAATATTCTCAACAATC+CGG | + | chr1.2:4409390-4409409 | MS.gene044065:CDS | 25.0% |
| ! | GTACTTTATAATGAACATCT+GGG | - | chr1.2:4408296-4408315 | None:intergenic | 25.0% |
| ! | TAGTTCAAAGAGAATGAAAA+TGG | + | chr1.2:4409954-4409973 | MS.gene044065:CDS | 25.0% |
| ! | TATCTCTAGTATGAATCTTA+TGG | + | chr1.2:4407634-4407653 | MS.gene044065:intron | 25.0% |
| ! | TGGAAAACTAGTATTATCAA+TGG | - | chr1.2:4406653-4406672 | None:intergenic | 25.0% |
| ! | TGTACTTTATAATGAACATC+TGG | - | chr1.2:4408297-4408316 | None:intergenic | 25.0% |
| ! | TTAGATGGTAAATGGTTTAA+TGG | + | chr1.2:4406138-4406157 | MS.gene044065:CDS | 25.0% |
| ! | TTATGATTATTGTAGACTAG+GGG | - | chr1.2:4407573-4407592 | None:intergenic | 25.0% |
| ! | TTCAAAGTAACTTCATTGAA+TGG | - | chr1.2:4406416-4406435 | None:intergenic | 25.0% |
| !! | AGTTTACATCTTTTGTTGAA+GGG | - | chr1.2:4409675-4409694 | None:intergenic | 25.0% |
| !! | TACTGTTAGTAAGGATATTT+TGG | + | chr1.2:4407077-4407096 | MS.gene044065:intron | 25.0% |
| !! | TAGTTTACATCTTTTGTTGA+AGG | - | chr1.2:4409676-4409695 | None:intergenic | 25.0% |
| !! | TGTTCTTTTTCTGTTTCAAA+AGG | + | chr1.2:4407159-4407178 | MS.gene044065:CDS | 25.0% |
| !! | TTTGAGAATTTTTATGCTGT+TGG | + | chr1.2:4406882-4406901 | MS.gene044065:intron | 25.0% |
| !! | TTTTAATCAGGATCTTAACT+TGG | + | chr1.2:4407470-4407489 | MS.gene044065:intron | 25.0% |
| !!! | AAAAACATTTGATGATGATC+CGG | - | chr1.2:4409476-4409495 | None:intergenic | 25.0% |
| !!! | AGATTTTTAACTTTCCACAA+TGG | + | chr1.2:4406616-4406635 | MS.gene044065:intron | 25.0% |
| !!! | ATCTGTTTTCACTTTTAATC+AGG | + | chr1.2:4407458-4407477 | MS.gene044065:intron | 25.0% |
| !!! | ATCTTTTTTAATAGTTCCAG+GGG | + | chr1.2:4409850-4409869 | MS.gene044065:CDS | 25.0% |
| !!! | CATATTATAAGAGTGCTAAA+AGG | + | chr1.2:4408315-4408334 | MS.gene044065:intron | 25.0% |
| !!! | CTTTTACTGTCATATTTTAG+TGG | + | chr1.2:4407964-4407983 | MS.gene044065:intron | 25.0% |
| !!! | GTATCTTTTTTAATAGTTCC+AGG | + | chr1.2:4409848-4409867 | MS.gene044065:CDS | 25.0% |
| !!! | TTTTGAAAAAGCTTGCAATT+TGG | + | chr1.2:4407427-4407446 | MS.gene044065:intron | 25.0% |
| AAAATGCAACTAAATTGGAC+AGG | - | chr1.2:4406856-4406875 | None:intergenic | 30.0% | |
| AAATGCAACTAAATTGGACA+GGG | - | chr1.2:4406855-4406874 | None:intergenic | 30.0% | |
| AACATGACCATCAATGTAAT+GGG | - | chr1.2:4409182-4409201 | None:intergenic | 30.0% | |
| AACTACAAAAATACCTTAGG+TGG | - | chr1.2:4408571-4408590 | None:intergenic | 30.0% | |
| AAGAACACACTAAGAAGAAA+TGG | - | chr1.2:4406673-4406692 | None:intergenic | 30.0% | |
| AAGCGAAAAGATCAGATATT+CGG | - | chr1.2:4406941-4406960 | None:intergenic | 30.0% | |
| ACAGTATGCCAATATATCAT+CGG | + | chr1.2:4408765-4408784 | MS.gene044065:intron | 30.0% | |
| AGATATTTGATCAACATCAG+AGG | + | chr1.2:4408984-4409003 | MS.gene044065:CDS | 30.0% | |
| AGCAATTACTTTACTAGAAC+AGG | - | chr1.2:4406764-4406783 | None:intergenic | 30.0% | |
| ATCTAACCTGTTCAACAAAA+AGG | - | chr1.2:4408354-4408373 | None:intergenic | 30.0% | |
| CAGCATATATGCAAAAATGT+AGG | + | chr1.2:4406332-4406351 | MS.gene044065:intron | 30.0% | |
| GAAAAAACCGCTATATACAT+AGG | - | chr1.2:4408717-4408736 | None:intergenic | 30.0% | |
| GAATTCGTATGAACAAAACA+AGG | - | chr1.2:4406964-4406983 | None:intergenic | 30.0% | |
| GATATTTGATCAACATCAGA+GGG | + | chr1.2:4408985-4409004 | MS.gene044065:CDS | 30.0% | |
| GGATTAGATTAGATGGTAAA+TGG | + | chr1.2:4406130-4406149 | MS.gene044065:CDS | 30.0% | |
| GGTTAGATTATTCTTATCTG+AGG | + | chr1.2:4408366-4408385 | MS.gene044065:intron | 30.0% | |
| GTAAAGTTGACAGAAATTCT+TGG | + | chr1.2:4407281-4407300 | MS.gene044065:intron | 30.0% | |
| GTAATATCAGCGAAAACAAA+AGG | - | chr1.2:4407060-4407079 | None:intergenic | 30.0% | |
| TACATTATCTCCTGGTATAT+TGG | + | chr1.2:4409249-4409268 | MS.gene044065:CDS | 30.0% | |
| TAGTCAGTGTTGTCAAATAT+TGG | + | chr1.2:4406501-4406520 | MS.gene044065:intron | 30.0% | |
| TCAACTTGATTAAAGGGATT+AGG | - | chr1.2:4409508-4409527 | None:intergenic | 30.0% | |
| TCATACTAGAGATACTTAGA+AGG | - | chr1.2:4407628-4407647 | None:intergenic | 30.0% | |
| TCTAGTATGAATCTTATGGA+TGG | + | chr1.2:4407638-4407657 | MS.gene044065:intron | 30.0% | |
| TGTCAAACCTATGTATATAG+CGG | + | chr1.2:4408707-4408726 | MS.gene044065:intron | 30.0% | |
| TTGTATTATCACTTTGTACG+TGG | + | chr1.2:4406720-4406739 | MS.gene044065:intron | 30.0% | |
| ! | ACAAGGAAATAAACAGGTTT+TGG | - | chr1.2:4408093-4408112 | None:intergenic | 30.0% |
| ! | CTTTCTGTTTTCTTTGCTTT+TGG | + | chr1.2:4406096-4406115 | MS.gene044065:CDS | 30.0% |
| ! | GTTCATTGGATTAGATTAGA+TGG | + | chr1.2:4406123-4406142 | MS.gene044065:CDS | 30.0% |
| ! | GTTGTCTGAAGTGAATTAAT+TGG | - | chr1.2:4407315-4407334 | None:intergenic | 30.0% |
| ! | TTGTCAAATATTGGCTATGA+CGG | + | chr1.2:4406510-4406529 | MS.gene044065:intron | 30.0% |
| !! | ATAAGAGTGCTAAAAGGAAA+AGG | + | chr1.2:4408321-4408340 | MS.gene044065:intron | 30.0% |
| !! | GTATGTATTTCTAGGTTGTT+GGG | + | chr1.2:4408789-4408808 | MS.gene044065:intron | 30.0% |
| !! | TAGTAGAAGATATTGATTCC+TGG | + | chr1.2:4407602-4407621 | MS.gene044065:intron | 30.0% |
| !!! | CAGCTCTATCTTTTAAAACT+TGG | - | chr1.2:4406579-4406598 | None:intergenic | 30.0% |
| !!! | GTACACAATTTTAGAGCAAA+AGG | + | chr1.2:4409799-4409818 | MS.gene044065:CDS | 30.0% |
| !!! | TCTGTTAGCCTTTTTATGAT+TGG | + | chr1.2:4406451-4406470 | MS.gene044065:intron | 30.0% |
| AAATGATGCATCATGCTGAA+AGG | - | chr1.2:4409899-4409918 | None:intergenic | 35.0% | |
| AATGCAGAGTTATAGAGAGA+AGG | + | chr1.2:4407505-4407524 | MS.gene044065:intron | 35.0% | |
| ACAAAAATATAGCGCGTGTT+TGG | - | chr1.2:4406275-4406294 | None:intergenic | 35.0% | |
| ACAAGGATGATATCTTTGCT+TGG | - | chr1.2:4408432-4408451 | None:intergenic | 35.0% | |
| ACTTGATTAAAGGGATTAGG+AGG | - | chr1.2:4409505-4409524 | None:intergenic | 35.0% | |
| AGCGAAAAGATCAGATATTC+GGG | - | chr1.2:4406940-4406959 | None:intergenic | 35.0% | |
| AGTATGCCAATATATCATCG+GGG | + | chr1.2:4408767-4408786 | MS.gene044065:intron | 35.0% | |
| AGTTGACAGAAATTCTTGGT+TGG | + | chr1.2:4407285-4407304 | MS.gene044065:intron | 35.0% | |
| ATGCAGAGTTATAGAGAGAA+GGG | + | chr1.2:4407506-4407525 | MS.gene044065:intron | 35.0% | |
| ATGTTGTCAAAAAATGCGCA+CGG | - | chr1.2:4406551-4406570 | None:intergenic | 35.0% | |
| CAACATGACCATCAATGTAA+TGG | - | chr1.2:4409183-4409202 | None:intergenic | 35.0% | |
| CAGTATGCCAATATATCATC+GGG | + | chr1.2:4408766-4408785 | MS.gene044065:intron | 35.0% | |
| CCAGCTAATAACTGGTATTT+CGG | - | chr1.2:4408542-4408561 | None:intergenic | 35.0% | |
| CGCTGATATTACTGTTAGTA+AGG | + | chr1.2:4407068-4407087 | MS.gene044065:intron | 35.0% | |
| CTAATAACTGGTATTTCGGA+CGG | - | chr1.2:4408538-4408557 | None:intergenic | 35.0% | |
| GAGGCTATATAAGTTGCAAT+TGG | + | chr1.2:4407347-4407366 | MS.gene044065:intron | 35.0% | |
| GGTTTAATCCAGCTAATAAC+TGG | - | chr1.2:4408550-4408569 | None:intergenic | 35.0% | |
| GTGGTCTCAACTTGATTAAA+GGG | - | chr1.2:4409514-4409533 | None:intergenic | 35.0% | |
| TACATACCCCGATGATATAT+TGG | - | chr1.2:4408776-4408795 | None:intergenic | 35.0% | |
| TATAACTCTGCATTGAGACT+GGG | - | chr1.2:4407499-4407518 | None:intergenic | 35.0% | |
| TCCTTGAAGCTATTTATCCA+CGG | + | chr1.2:4409017-4409036 | MS.gene044065:CDS | 35.0% | |
| TCGTAGGTTATAAGTGTGTT+TGG | + | chr1.2:4406197-4406216 | MS.gene044065:intron | 35.0% | |
| TTATATAGCCTCACTATGAC+AGG | - | chr1.2:4407339-4407358 | None:intergenic | 35.0% | |
| TTATCTCCTGGTATATTGGA+TGG | + | chr1.2:4409253-4409272 | MS.gene044065:CDS | 35.0% | |
| TTCTTCTTAGTGTGTTCTTG+TGG | + | chr1.2:4406674-4406693 | MS.gene044065:intron | 35.0% | |
| TTTAAAAGATAGAGCTGCTG+TGG | + | chr1.2:4406582-4406601 | MS.gene044065:intron | 35.0% | |
| TTTGAACCATCCAATATACC+AGG | - | chr1.2:4409262-4409281 | None:intergenic | 35.0% | |
| ! | ATTTTACCTCCTGGATTTGA+GGG | + | chr1.2:4408481-4408500 | MS.gene044065:CDS | 35.0% |
| ! | CAAGTCAGTGTGATATTTTC+TGG | + | chr1.2:4407224-4407243 | MS.gene044065:CDS | 35.0% |
| ! | CAGAAAATATCACACTGACT+TGG | - | chr1.2:4407226-4407245 | None:intergenic | 35.0% |
| ! | CTAGTATTATCAATGGTGGA+TGG | - | chr1.2:4406646-4406665 | None:intergenic | 35.0% |
| ! | CTGTTTCCTTTTTGTTGAAC+AGG | + | chr1.2:4408345-4408364 | MS.gene044065:intron | 35.0% |
| ! | TATTTTACCTCCTGGATTTG+AGG | + | chr1.2:4408480-4408499 | MS.gene044065:CDS | 35.0% |
| ! | TCAATAGCTGAACTGATTTC+AGG | - | chr1.2:4409634-4409653 | None:intergenic | 35.0% |
| ! | TCTGATGATATTTTACCTCC+TGG | + | chr1.2:4408472-4408491 | MS.gene044065:CDS | 35.0% |
| !! | AAAAGCATTTGATGAGGATG+TGG | - | chr1.2:4409536-4409555 | None:intergenic | 35.0% |
| !! | ATACAAGGCTTCGTTGTTTT+TGG | - | chr1.2:4409832-4409851 | None:intergenic | 35.0% |
| !! | CATAGTTTGATAATGGTTGC+AGG | - | chr1.2:4409774-4409793 | None:intergenic | 35.0% |
| !! | GGATGAAAAAGCATTTGATG+AGG | - | chr1.2:4409542-4409561 | None:intergenic | 35.0% |
| !! | GGTATGTATTTCTAGGTTGT+TGG | + | chr1.2:4408788-4408807 | MS.gene044065:intron | 35.0% |
| !! | TCTGTTTTCTTTGCTTTTGG+TGG | + | chr1.2:4406099-4406118 | MS.gene044065:CDS | 35.0% |
| !!! | AAACAGGTTTTGGATGAAAG+TGG | - | chr1.2:4408083-4408102 | None:intergenic | 35.0% |
| !!! | GGATATTTTGGTGTTCAAAC+AGG | + | chr1.2:4407089-4407108 | MS.gene044065:intron | 35.0% |
| AACAAGGTAATCCCTCATCA+GGG | + | chr1.2:4409926-4409945 | MS.gene044065:CDS | 40.0% | |
| AAGAGCTTGATTCAGCAACA+TGG | + | chr1.2:4409700-4409719 | MS.gene044065:CDS | 40.0% | |
| AATACAAAGCATAAGCAGCC+TGG | - | chr1.2:4406707-4406726 | None:intergenic | 40.0% | |
| AATTACGCCTGTTGAAGATG+GGG | + | chr1.2:4409213-4409232 | MS.gene044065:CDS | 40.0% | |
| AATTTGCCCAACAAGAGGAT+CGG | - | chr1.2:4407532-4407551 | None:intergenic | 40.0% | |
| ACCAACTTCTCAATCACTTC+CGG | - | chr1.2:4409412-4409431 | None:intergenic | 40.0% | |
| ACGTTGGTGCAAGAAAGTAA+AGG | + | chr1.2:4408639-4408658 | MS.gene044065:intron | 40.0% | |
| ACTTGAAACCACACTAACAC+CGG | - | chr1.2:4407005-4407024 | None:intergenic | 40.0% | |
| AGGAATCTCCTTCACAAGTT+GGG | + | chr1.2:4408386-4408405 | MS.gene044065:CDS | 40.0% | |
| AGGATGATATCTTTGCTTGG+AGG | - | chr1.2:4408429-4408448 | None:intergenic | 40.0% | |
| ATAACTCTGCATTGAGACTG+GGG | - | chr1.2:4407498-4407517 | None:intergenic | 40.0% | |
| ATATCATCCTTGTTGCCTCA+AGG | + | chr1.2:4408439-4408458 | MS.gene044065:CDS | 40.0% | |
| CAATTACGCCTGTTGAAGAT+GGG | + | chr1.2:4409212-4409231 | MS.gene044065:CDS | 40.0% | |
| CACAGCACAAGGAAATAAAC+AGG | - | chr1.2:4408099-4408118 | None:intergenic | 40.0% | |
| CATCTTCAACAGGCGTAATT+GGG | - | chr1.2:4409213-4409232 | None:intergenic | 40.0% | |
| CCGAAATACCAGTTATTAGC+TGG | + | chr1.2:4408539-4408558 | MS.gene044065:CDS | 40.0% | |
| CTATAACTCTGCATTGAGAC+TGG | - | chr1.2:4407500-4407519 | None:intergenic | 40.0% | |
| GAATTCAACCCAACTTGTGA+AGG | - | chr1.2:4408397-4408416 | None:intergenic | 40.0% | |
| GACGATTCCCATTACATTGA+TGG | + | chr1.2:4409172-4409191 | MS.gene044065:CDS | 40.0% | |
| GCACAGTATGCACAAAATAC+CGG | + | chr1.2:4409454-4409473 | MS.gene044065:CDS | 40.0% | |
| GGTCTTTGTTCTCTAACACT+GGG | + | chr1.2:4407368-4407387 | MS.gene044065:intron | 40.0% | |
| GGTGGTCTCAACTTGATTAA+AGG | - | chr1.2:4409515-4409534 | None:intergenic | 40.0% | |
| TAGCTGGATTAAACCACCTA+AGG | + | chr1.2:4408555-4408574 | MS.gene044065:CDS | 40.0% | |
| TATTGATGCTACTCCTGTTG+AGG | + | chr1.2:4409648-4409667 | MS.gene044065:CDS | 40.0% | |
| TCATCGGGGTATGTATTTCT+AGG | + | chr1.2:4408781-4408800 | MS.gene044065:intron | 40.0% | |
| TCCGTGGATAAATAGCTTCA+AGG | - | chr1.2:4409021-4409040 | None:intergenic | 40.0% | |
| TCGTCAACATCCACTGAAAT+AGG | - | chr1.2:4409157-4409176 | None:intergenic | 40.0% | |
| TCTTCCTATACTCACACAAC+TGG | + | chr1.2:4409565-4409584 | MS.gene044065:CDS | 40.0% | |
| TGATGAGGGATTACCTTGTT+GGG | - | chr1.2:4409926-4409945 | None:intergenic | 40.0% | |
| TGCCATTGAGTAGACATAGT+TGG | - | chr1.2:4409604-4409623 | None:intergenic | 40.0% | |
| TGGTCTTTGTTCTCTAACAC+TGG | + | chr1.2:4407367-4407386 | MS.gene044065:intron | 40.0% | |
| TGTGTGAGTATAGGAAGAAG+TGG | - | chr1.2:4409563-4409582 | None:intergenic | 40.0% | |
| TGTTCTTGTGGTTGTTAACC+AGG | + | chr1.2:4406686-4406705 | MS.gene044065:intron | 40.0% | |
| TTAATAGTTCCAGGGGATGT+CGG | + | chr1.2:4409857-4409876 | MS.gene044065:CDS | 40.0% | |
| TTAGTGAAGAGCAGTGAACA+TGG | + | chr1.2:4409343-4409362 | MS.gene044065:CDS | 40.0% | |
| TTTGTTCTCTAACACTGGGA+TGG | + | chr1.2:4407372-4407391 | MS.gene044065:intron | 40.0% | |
| ! | GACAACACTGACTAACACTA+CGG | - | chr1.2:4406495-4406514 | None:intergenic | 40.0% |
| !! | GTATTATCAATGGTGGATGG+TGG | - | chr1.2:4406643-4406662 | None:intergenic | 40.0% |
| !! | TCGTTAATTTGCCCAACAAG+AGG | - | chr1.2:4407537-4407556 | None:intergenic | 40.0% |
| !!! | TTGCTTTTGGTGGTGTTCAT+TGG | + | chr1.2:4406109-4406128 | MS.gene044065:CDS | 40.0% |
| !!! | TTTTGGTGTTCAAACAGGCT+TGG | + | chr1.2:4407094-4407113 | MS.gene044065:intron | 40.0% |
| AAGGTCTCGGGATCTGATTA+GGG | + | chr1.2:4407402-4407421 | MS.gene044065:intron | 45.0% | |
| ACCTCCAGTTGTGTGAGTAT+AGG | - | chr1.2:4409572-4409591 | None:intergenic | 45.0% | |
| AGACAACACCTGTCATAGTG+AGG | + | chr1.2:4407328-4407347 | MS.gene044065:intron | 45.0% | |
| AGAGAAGACTCGTACTTTGG+AGG | - | chr1.2:4409055-4409074 | None:intergenic | 45.0% | |
| AGATCGTGCTAGATCTCACA+TGG | + | chr1.2:4408933-4408952 | MS.gene044065:intron | 45.0% | |
| AGCATTTGATGAGGATGTGG+TGG | - | chr1.2:4409533-4409552 | None:intergenic | 45.0% | |
| AGCTTGATTCAGCAACATGG+AGG | + | chr1.2:4409703-4409722 | MS.gene044065:CDS | 45.0% | |
| ATCTCAGCCACTTCCAACAT+GGG | + | chr1.2:4407196-4407215 | MS.gene044065:CDS | 45.0% | |
| CAACAAGGTAATCCCTCATC+AGG | + | chr1.2:4409925-4409944 | MS.gene044065:CDS | 45.0% | |
| CACTGTTACGACTATGTCGA+TGG | + | chr1.2:4409282-4409301 | MS.gene044065:CDS | 45.0% | |
| CCAATTACGCCTGTTGAAGA+TGG | + | chr1.2:4409211-4409230 | MS.gene044065:CDS | 45.0% | |
| CCACAAAAACTCACAGCACA+AGG | - | chr1.2:4408110-4408129 | None:intergenic | 45.0% | |
| CCATCTTCAACAGGCGTAAT+TGG | - | chr1.2:4409214-4409233 | None:intergenic | 45.0% | |
| CGCCAACTATGTCTACTCAA+TGG | + | chr1.2:4409599-4409618 | MS.gene044065:CDS | 45.0% | |
| CTAGAGATACTTAGAAGGCC+AGG | - | chr1.2:4407623-4407642 | None:intergenic | 45.0% | |
| CTGAAATAGGACTGCATCGA+AGG | - | chr1.2:4409144-4409163 | None:intergenic | 45.0% | |
| CTGATGAGGGATTACCTTGT+TGG | - | chr1.2:4409927-4409946 | None:intergenic | 45.0% | |
| CTGTTGCTCATGTGTTAGAC+CGG | + | chr1.2:4406983-4407002 | MS.gene044065:CDS | 45.0% | |
| GAACTATGCATCCCTGATGA+GGG | - | chr1.2:4409940-4409959 | None:intergenic | 45.0% | |
| GAGGAATCTCCTTCACAAGT+TGG | + | chr1.2:4408385-4408404 | MS.gene044065:CDS | 45.0% | |
| GATGAGGGATTACCTTGTTG+GGG | - | chr1.2:4409925-4409944 | None:intergenic | 45.0% | |
| GCAAGAGAAGACTCGTACTT+TGG | - | chr1.2:4409058-4409077 | None:intergenic | 45.0% | |
| TAGACTCTCAAGTGCATGCA+TGG | - | chr1.2:4408237-4408256 | None:intergenic | 45.0% | |
| TCCGGAAGTGATTGAGAAGT+TGG | + | chr1.2:4409408-4409427 | MS.gene044065:CDS | 45.0% | |
| TCCTATACTCACACAACTGG+AGG | + | chr1.2:4409568-4409587 | MS.gene044065:CDS | 45.0% | |
| TCGATGCAGTCCTATTTCAG+TGG | + | chr1.2:4409144-4409163 | MS.gene044065:intron | 45.0% | |
| TGAACTATGCATCCCTGATG+AGG | - | chr1.2:4409941-4409960 | None:intergenic | 45.0% | |
| TGACGATTACTGGAGGAGTA+TGG | - | chr1.2:4409748-4409767 | None:intergenic | 45.0% | |
| TGCACTCTTTGTGCTTGGTT+AGG | + | chr1.2:4408164-4408183 | MS.gene044065:intron | 45.0% | |
| TGTCTACTCAATGGCATCGT+AGG | + | chr1.2:4409608-4409627 | MS.gene044065:CDS | 45.0% | |
| TTCCTTGCACTCTTTGTGCT+TGG | + | chr1.2:4408159-4408178 | MS.gene044065:intron | 45.0% | |
| TTTGTTGAAGGGACCTCAAC+AGG | - | chr1.2:4409664-4409683 | None:intergenic | 45.0% | |
| ! | AACCAAGCACAAAGAGTGCA+AGG | - | chr1.2:4408164-4408183 | None:intergenic | 45.0% |
| ! | AGACTCGTACTTTGGAGGAA+TGG | - | chr1.2:4409050-4409069 | None:intergenic | 45.0% |
| ! | AGCACAAAGAGTGCAAGGAA+AGG | - | chr1.2:4408159-4408178 | None:intergenic | 45.0% |
| ! | CAGATATTCGGGTTATGCAG+AGG | - | chr1.2:4406929-4406948 | None:intergenic | 45.0% |
| ! | CCTTGTGCTGTGAGTTTTTG+TGG | + | chr1.2:4408107-4408126 | MS.gene044065:intron | 45.0% |
| ! | TTGCAGGTTCTGACGATTAC+TGG | - | chr1.2:4409758-4409777 | None:intergenic | 45.0% |
| !! | ATTTTCTGGAGATGTACCGC+TGG | + | chr1.2:4407238-4407257 | MS.gene044065:CDS | 45.0% |
| !! | TTTATTTATATATATTATCT+TGG | + | chr1.2:4408189-4408208 | MS.gene044065:intron | 5.0% |
| ACTCTCAAGTGCATGCATGG+TGG | - | chr1.2:4408234-4408253 | None:intergenic | 50.0% | |
| AGATCTCACATGGCAAGTGG+TGG | + | chr1.2:4408943-4408962 | MS.gene044065:CDS | 50.0% | |
| AGCTTCTCCTTGAGGCAACA+AGG | - | chr1.2:4408449-4408468 | None:intergenic | 50.0% | |
| ATGCACACCAATGCCAATGC+AGG | + | chr1.2:4406248-4406267 | MS.gene044065:intron | 50.0% | |
| CCTGTTGAAGATGGGGATGT+GGG | + | chr1.2:4409220-4409239 | MS.gene044065:CDS | 50.0% | |
| GAAGGTCTCGGGATCTGATT+AGG | + | chr1.2:4407401-4407420 | MS.gene044065:intron | 50.0% | |
| GATACTTCTGCAAGCACCAG+CGG | - | chr1.2:4407257-4407276 | None:intergenic | 50.0% | |
| GATCTCAGCCACTTCCAACA+TGG | + | chr1.2:4407195-4407214 | MS.gene044065:CDS | 50.0% | |
| GCATCATTTCAGCCCCAACA+AGG | + | chr1.2:4409910-4409929 | MS.gene044065:CDS | 50.0% | |
| GCATGAGTTCCCTCAAATCC+AGG | - | chr1.2:4408493-4408512 | None:intergenic | 50.0% | |
| GCTAGATCTCACATGGCAAG+TGG | + | chr1.2:4408940-4408959 | MS.gene044065:CDS | 50.0% | |
| GGAGCGGATACATTATCTCC+TGG | + | chr1.2:4409241-4409260 | MS.gene044065:CDS | 50.0% | |
| GGAGGAATGGAAGATATCCG+TGG | - | chr1.2:4409037-4409056 | None:intergenic | 50.0% | |
| GTATGAGCTACTGCTCTCGT+AGG | + | chr1.2:4406181-4406200 | MS.gene044065:CDS | 50.0% | |
| TCACACAACTGGAGGTCAGA+TGG | + | chr1.2:4409576-4409595 | MS.gene044065:CDS | 50.0% | |
| TCAGAACCAGCTTCTCCTTG+AGG | - | chr1.2:4408457-4408476 | None:intergenic | 50.0% | |
| TCTCTAACACTGGGATGGAG+AGG | + | chr1.2:4407377-4407396 | MS.gene044065:intron | 50.0% | |
| TGAGTTCCCTCAAATCCAGG+AGG | - | chr1.2:4408490-4408509 | None:intergenic | 50.0% | |
| TGCACACCAATGCCAATGCA+GGG | + | chr1.2:4406249-4406268 | MS.gene044065:intron | 50.0% | |
| TTGGACAGGGAACCACATGA+CGG | - | chr1.2:4406842-4406861 | None:intergenic | 50.0% | |
| TTGTTGCCTCAAGGAGAAGC+TGG | + | chr1.2:4408448-4408467 | MS.gene044065:CDS | 50.0% | |
| ! | CAGGTTCTGACGATTACTGG+AGG | - | chr1.2:4409755-4409774 | None:intergenic | 50.0% |
| ! | GCTGGTGCTTGCAGAAGTAT+CGG | + | chr1.2:4407256-4407275 | MS.gene044065:CDS | 50.0% |
| ! | GTGTTAGACCGGTGTTAGTG+TGG | + | chr1.2:4406994-4407013 | MS.gene044065:CDS | 50.0% |
| !! | TTTCAGGTTCCACCGTCATG+TGG | + | chr1.2:4406827-4406846 | MS.gene044065:intron | 50.0% |
| ACACTGGGATGGAGAGGTGA+AGG | + | chr1.2:4407383-4407402 | MS.gene044065:intron | 55.0% | |
| AGAAGGGCCGATCCTCTTGT+TGG | + | chr1.2:4407522-4407541 | MS.gene044065:intron | 55.0% | |
| AGTTCCAGGGGATGTCGGAA+TGG | + | chr1.2:4409862-4409881 | MS.gene044065:CDS | 55.0% | |
| ATGCGCACGGAAATCCTCCA+TGG | - | chr1.2:4406538-4406557 | None:intergenic | 55.0% | |
| CAGCCACTTCCAACATGGGA+GGG | + | chr1.2:4407200-4407219 | MS.gene044065:CDS | 55.0% | |
| CCCACATCCCCATCTTCAAC+AGG | - | chr1.2:4409223-4409242 | None:intergenic | 55.0% | |
| GAAGGGCCGATCCTCTTGTT+GGG | + | chr1.2:4407523-4407542 | MS.gene044065:intron | 55.0% | |
| GATGGAGAGGTGAAGGTCTC+GGG | + | chr1.2:4407390-4407409 | MS.gene044065:intron | 55.0% | |
| GCCTGTTGAAGATGGGGATG+TGG | + | chr1.2:4409219-4409238 | MS.gene044065:CDS | 55.0% | |
| GGATGGAGAGGTGAAGGTCT+CGG | + | chr1.2:4407389-4407408 | MS.gene044065:intron | 55.0% | |
| TCAGCCACTTCCAACATGGG+AGG | + | chr1.2:4407199-4407218 | MS.gene044065:CDS | 55.0% | |
| TGAAGATGGGGATGTGGGAG+CGG | + | chr1.2:4409225-4409244 | MS.gene044065:CDS | 55.0% | |
| ! | GTTTGGCCCTGCATTGGCAT+TGG | - | chr1.2:4406258-4406277 | None:intergenic | 55.0% |
| ! | TATTGGCTATGACGGCGCCA+TGG | + | chr1.2:4406518-4406537 | MS.gene044065:intron | 55.0% |
| ! | TGGTGGATGGTGGTCCATTG+TGG | - | chr1.2:4406633-4406652 | None:intergenic | 55.0% |
| !! | GGTGCTTGCAGAAGTATCGG+AGG | + | chr1.2:4407259-4407278 | MS.gene044065:CDS | 55.0% |
| AGCTCCATTCCGACATCCCC+TGG | - | chr1.2:4409869-4409888 | None:intergenic | 60.0% | |
| CTCACATGGCAAGTGGTGGC+TGG | + | chr1.2:4408947-4408966 | MS.gene044065:CDS | 60.0% | |
| GACAGGGAACCACATGACGG+TGG | - | chr1.2:4406839-4406858 | None:intergenic | 60.0% | |
| TGGCCCTCCCATGTTGGAAG+TGG | - | chr1.2:4407206-4407225 | None:intergenic | 60.0% | |
| !! | CTGACTTGGCCCTCCCATGT+TGG | - | chr1.2:4407212-4407231 | None:intergenic | 60.0% |
| GCGCGTGTTTGGCCCTGCAT+TGG | - | chr1.2:4406264-4406283 | None:intergenic | 65.0% | |
| TGGCTATGACGGCGCCATGG+AGG | + | chr1.2:4406521-4406540 | MS.gene044065:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 4406093 | 4409996 | 4406093 | ID=MS.gene044065 |
| chr1.2 | mRNA | 4406093 | 4409996 | 4406093 | ID=MS.gene044065.t1;Parent=MS.gene044065 |
| chr1.2 | exon | 4406093 | 4406202 | 4406093 | ID=MS.gene044065.t1.exon1;Parent=MS.gene044065.t1 |
| chr1.2 | CDS | 4406093 | 4406202 | 4406093 | ID=cds.MS.gene044065.t1;Parent=MS.gene044065.t1 |
| chr1.2 | exon | 4406920 | 4407029 | 4406920 | ID=MS.gene044065.t1.exon2;Parent=MS.gene044065.t1 |
| chr1.2 | CDS | 4406920 | 4407029 | 4406920 | ID=cds.MS.gene044065.t1;Parent=MS.gene044065.t1 |
| chr1.2 | exon | 4407111 | 4407280 | 4407111 | ID=MS.gene044065.t1.exon3;Parent=MS.gene044065.t1 |
| chr1.2 | CDS | 4407111 | 4407280 | 4407111 | ID=cds.MS.gene044065.t1;Parent=MS.gene044065.t1 |
| chr1.2 | exon | 4408367 | 4408576 | 4408367 | ID=MS.gene044065.t1.exon4;Parent=MS.gene044065.t1 |
| chr1.2 | CDS | 4408367 | 4408576 | 4408367 | ID=cds.MS.gene044065.t1;Parent=MS.gene044065.t1 |
| chr1.2 | exon | 4408935 | 4409059 | 4408935 | ID=MS.gene044065.t1.exon5;Parent=MS.gene044065.t1 |
| chr1.2 | CDS | 4408935 | 4409059 | 4408935 | ID=cds.MS.gene044065.t1;Parent=MS.gene044065.t1 |
| chr1.2 | exon | 4409153 | 4409996 | 4409153 | ID=MS.gene044065.t1.exon6;Parent=MS.gene044065.t1 |
| chr1.2 | CDS | 4409153 | 4409996 | 4409153 | ID=cds.MS.gene044065.t1;Parent=MS.gene044065.t1 |
| Gene Sequence |
| Protein sequence |
