AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044076

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044076.t1 MTR_6g051425 33.333 273 173 4 4 267 19 291 7.50e-40 150
MS.gene044076.t1 MTR_7g446060 72.527 91 25 0 79 169 2 92 8.16e-40 143
MS.gene044076.t1 MTR_2g090105 47.283 184 81 6 580 761 16 185 5.37e-38 140
MS.gene044076.t1 MTR_7g031620 79.268 82 17 0 7 88 1 82 6.19e-35 127
MS.gene044076.t1 MTR_5g023310 41.401 157 25 2 133 289 16 105 1.05e-29 114
MS.gene044076.t1 MTR_0558s0020 29.457 258 154 7 7 238 41 296 1.59e-25 107
MS.gene044076.t1 MTR_4g035820 32.422 256 154 9 1 242 74 324 5.03e-25 111
MS.gene044076.t1 MTR_8g446020 29.834 181 121 3 62 238 78 256 3.05e-20 91.7
MS.gene044076.t1 MTR_0856s0010 36.220 127 80 1 2 127 34 160 6.39e-19 85.1
MS.gene044076.t1 MTR_6g090505 29.444 180 121 3 62 237 53 230 5.39e-17 84.0
MS.gene044076.t1 MTR_1g083640 27.074 229 139 7 7 209 56 282 1.14e-16 81.6
MS.gene044076.t1 MTR_1g008290 35.659 129 80 2 66 194 19 144 6.54e-16 75.9
MS.gene044076.t1 MTR_1g070355 28.692 237 150 9 8 232 80 309 1.90e-15 80.5
MS.gene044076.t1 MTR_6g022070 28.767 146 100 1 292 437 1 142 5.30e-15 77.4
MS.gene044076.t1 MTR_1g013060 29.665 209 132 6 2 198 24 229 2.24e-14 73.6
MS.gene044076.t1 MTR_7g446480 33.735 166 105 4 84 246 151 314 2.88e-14 75.1
MS.gene044076.t1 MTR_7g446510 33.133 166 106 4 84 246 166 329 7.26e-14 73.9
MS.gene044076.t1 MTR_8g465780 31.579 114 72 2 368 480 1 109 4.31e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044076.t1 AT4G15090 31.319 728 470 12 2 722 51 755 5.99e-124 391
MS.gene044076.t1 AT4G15090 31.319 728 470 12 2 722 51 755 5.99e-124 391
MS.gene044076.t1 AT4G15090 31.319 728 470 12 2 722 51 755 5.99e-124 391
MS.gene044076.t1 AT4G15090 31.319 728 470 12 2 722 51 755 5.99e-124 391
MS.gene044076.t1 AT4G15090 31.319 728 470 12 2 722 51 755 5.99e-124 391
MS.gene044076.t1 AT4G38180 35.951 573 343 10 2 561 73 634 1.30e-116 370
MS.gene044076.t1 AT1G76320 36.427 571 327 11 8 566 3 549 5.53e-114 360
MS.gene044076.t1 AT1G76320 36.427 571 327 11 8 566 3 549 1.56e-113 361
MS.gene044076.t1 AT1G76320 36.427 571 327 11 8 566 3 549 1.56e-113 361
MS.gene044076.t1 AT1G76320 36.427 571 327 11 8 566 3 549 1.63e-113 361
MS.gene044076.t1 AT3G22170 34.423 581 334 9 2 564 70 621 5.42e-111 357
MS.gene044076.t1 AT3G22170 34.423 581 334 9 2 564 70 621 5.42e-111 357
MS.gene044076.t1 AT1G52520 34.240 625 372 17 2 603 85 693 5.59e-111 353
MS.gene044076.t1 AT1G80010 32.522 575 367 12 2 562 95 662 2.02e-99 323
MS.gene044076.t1 AT4G19990 34.017 585 319 14 5 566 24 564 4.27e-95 313
MS.gene044076.t1 AT4G19990 34.017 585 319 14 5 566 24 564 4.79e-95 313
MS.gene044076.t1 AT4G19990 34.017 585 319 14 5 566 24 564 4.79e-95 313
MS.gene044076.t1 AT4G19990 34.017 585 319 14 5 566 38 578 5.95e-95 313
MS.gene044076.t1 AT4G19990 34.017 585 319 14 5 566 24 564 6.07e-95 313
MS.gene044076.t1 AT4G19990 34.017 585 319 14 5 566 24 564 6.07e-95 313
MS.gene044076.t1 AT4G19990 35.050 505 278 10 68 566 47 507 7.29e-90 297
MS.gene044076.t1 AT2G27110 32.337 569 338 12 2 561 49 579 4.49e-89 299
MS.gene044076.t1 AT2G27110 32.337 569 338 12 2 561 49 579 4.49e-89 299
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 176 602 8.79e-87 291
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 135 561 1.05e-86 291
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 135 561 1.07e-86 290
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 176 602 1.90e-86 291
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 176 602 1.90e-86 291
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 176 602 2.63e-86 290
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 176 602 2.63e-86 290
MS.gene044076.t1 AT2G32250 35.080 439 270 6 178 613 176 602 2.63e-86 290
MS.gene044076.t1 AT2G27110 35.374 441 260 9 126 561 14 434 1.13e-83 281
MS.gene044076.t1 AT4G38170 34.466 412 252 8 167 573 13 411 8.55e-78 261
MS.gene044076.t1 AT3G06250 30.427 562 338 11 2 559 190 702 1.57e-76 263
MS.gene044076.t1 AT3G06250 30.427 562 338 11 2 559 190 702 1.57e-76 263
MS.gene044076.t1 AT3G06250 30.427 562 338 11 2 559 190 702 1.57e-76 263
MS.gene044076.t1 AT5G18960 30.605 562 340 13 2 559 211 726 8.86e-76 261
MS.gene044076.t1 AT5G18960 30.605 562 340 13 2 559 211 726 8.86e-76 261
MS.gene044076.t1 AT1G10240 27.973 597 352 21 1 558 47 604 5.04e-65 229
MS.gene044076.t1 AT1G10240 27.973 597 352 21 1 558 47 604 5.04e-65 229
MS.gene044076.t1 AT5G28530 26.486 589 374 19 2 559 55 615 2.60e-50 188
MS.gene044076.t1 AT5G28530 26.486 589 374 19 2 559 55 615 2.60e-50 188
MS.gene044076.t1 AT5G28530 26.476 593 373 20 2 559 55 619 2.20e-49 185
MS.gene044076.t1 AT5G28530 24.269 581 338 22 2 559 55 556 2.00e-32 134
MS.gene044076.t1 AT5G28530 28.000 325 201 12 244 559 252 552 2.45e-28 121

Find 106 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATTGGTGAATGCTTTC+TGG 0.174694 1.2:-4517740 None:intergenic
CCATCTTCTTCTATAATTTC+AGG 0.175398 1.2:-4518254 None:intergenic
CATATGTGAGAGACACATTT+TGG 0.184902 1.2:+4517514 MS.gene044076:CDS
TCACTCATAAGTATTGAATT+TGG 0.202186 1.2:-4518746 None:intergenic
CAACCTCCACTTGAAATTCT+TGG 0.215469 1.2:-4517767 None:intergenic
GTCGTTTAAGAAATGTATTT+TGG 0.215986 1.2:+4516977 MS.gene044076:CDS
AAGGAAAACATGGCTGATTT+TGG 0.228183 1.2:+4517663 MS.gene044076:CDS
CACCATCGATGGCGAGCTTT+TGG 0.238537 1.2:-4517282 None:intergenic
TTTGAGTAAAAGTGATTTCA+TGG 0.249102 1.2:+4517401 MS.gene044076:CDS
ATAGCTTGTGTAAGTCATTT+TGG 0.262515 1.2:+4517702 MS.gene044076:CDS
TTCATGACTTGAGGATAAAA+TGG 0.287642 1.2:-4518864 None:intergenic
TATCAAAACCACATTTAATC+AGG 0.290721 1.2:-4518076 None:intergenic
CGTAGAAGCAACTTCGTAAA+AGG 0.295211 1.2:-4518147 None:intergenic
CTTTGTGTGCTTAAGCTAAC+AGG 0.298887 1.2:+4517984 MS.gene044076:CDS
TATGCCCGGTCTATAGGTTT+TGG 0.300318 1.2:+4516442 MS.gene044076:CDS
TGATCAGTTATTATGGCATT+TGG 0.323265 1.2:-4517222 None:intergenic
TGGTGAATGCTTTCTGGAAT+TGG 0.326923 1.2:-4517734 None:intergenic
AGGGCTGCATATGAATATTT+TGG 0.330794 1.2:+4517015 MS.gene044076:CDS
AAGTGCGGAGACTGCGACTT+GGG 0.331491 1.2:+4516863 MS.gene044076:CDS
CTCAAAGTCTTTCTCATTGA+AGG 0.335766 1.2:-4517907 None:intergenic
CGCAGTGGAGGAAGGATATA+AGG 0.337986 1.2:+4518042 MS.gene044076:CDS
TTTGTGGCATATAATGAAAA+AGG 0.344495 1.2:+4517305 MS.gene044076:CDS
AGTATGAACTCATTCTTTGA+TGG 0.348820 1.2:+4517567 MS.gene044076:CDS
ATTGTCTTGATCAGTTATTA+TGG 0.355900 1.2:-4517229 None:intergenic
AAGAGTTATGCCCGGTCTAT+AGG 0.361091 1.2:+4516436 MS.gene044076:CDS
ACTTATGAGTGAAGTATATC+AGG 0.377433 1.2:+4518757 MS.gene044076:CDS
TCATGCTTGCTTTGATAGAT+TGG 0.388712 1.2:+4517806 MS.gene044076:CDS
CATCTTCTTCTATAATTTCA+GGG 0.405722 1.2:-4518253 None:intergenic
AAGGGCGTCCTCCTTCAAAA+AGG 0.415773 1.2:+4518330 MS.gene044076:CDS
GAATATGACATTTGGTGAAA+AGG 0.417591 1.2:+4516819 MS.gene044076:CDS
CCTTTACTTCGAGTCGGTAC+AGG 0.430467 1.2:-4518311 None:intergenic
CATTTGGTGAAAAGGATTGT+AGG 0.444493 1.2:+4516827 MS.gene044076:CDS
AAAGTGATTTCATGGAAAAG+TGG 0.450883 1.2:+4517409 MS.gene044076:CDS
AAGTATTGAATTTGGATTGA+AGG 0.452798 1.2:-4518738 None:intergenic
CTCGCCATCGATGGTGTTTG+TGG 0.452930 1.2:+4517289 MS.gene044076:CDS
ATTTGATGAAAGAAATCGTT+GGG 0.454237 1.2:+4517485 MS.gene044076:CDS
CCATGGTCAATCTGTGTTGT+TGG 0.460551 1.2:+4517116 MS.gene044076:CDS
AATTAAAGACATAGTGTTTG+AGG 0.465732 1.2:+4517881 MS.gene044076:CDS
CATGGTCAATCTGTGTTGTT+GGG 0.466450 1.2:+4517117 MS.gene044076:CDS
ACTCCAACAAAAGGAGCAAA+TGG 0.472118 1.2:-4517087 None:intergenic
TGTTGTTTGTTTCAATTCAA+AGG 0.475247 1.2:+4517942 MS.gene044076:CDS
TTTGGGCAGATGCGAGATGT+AGG 0.483477 1.2:+4516995 MS.gene044076:CDS
AGTATTGAATTTGGATTGAA+GGG 0.484124 1.2:-4518737 None:intergenic
TTGGCTGTTCACAACATGGT+TGG 0.487761 1.2:+4517179 MS.gene044076:CDS
CCTGAAATTATAGAAGAAGA+TGG 0.488011 1.2:+4518254 MS.gene044076:CDS
CTAAATATAGTTCCAACCTT+AGG 0.488331 1.2:-4516385 None:intergenic
TATCCTCAAGTCATGAATCA+TGG 0.488967 1.2:+4518870 MS.gene044076:CDS
CGGAGACTGCGACTTGGGGT+TGG 0.494185 1.2:+4516868 MS.gene044076:CDS
GTTCAAGTAGTTGATAAAGT+TGG 0.495312 1.2:+4518549 MS.gene044076:CDS
CTGTACCGACTCGAAGTAAA+GGG 0.498649 1.2:+4518312 MS.gene044076:CDS
CTATAGTTGTTGAAGCGAAT+GGG 0.503159 1.2:+4516791 MS.gene044076:CDS
AAGTGATTTCATGGAAAAGT+GGG 0.506412 1.2:+4517410 MS.gene044076:CDS
TCTATAGTTGTTGAAGCGAA+TGG 0.507984 1.2:+4516790 MS.gene044076:CDS
CCTGTACCGACTCGAAGTAA+AGG 0.509102 1.2:+4518311 MS.gene044076:CDS
CCACTGCGAGAAAATATAAG+AGG 0.509446 1.2:-4518027 None:intergenic
AATGTGTCTCTCACATATGC+AGG 0.509862 1.2:-4517510 None:intergenic
CATTCAATCTAGCCTTGCAC+TGG 0.510411 1.2:-4516591 None:intergenic
AATGCGTGTATTTCTTTAGA+CGG 0.517437 1.2:+4516610 MS.gene044076:CDS
GCTTGCTTTGATAGATTGGA+AGG 0.517556 1.2:+4517810 MS.gene044076:CDS
ATTGCTCTTGAGCATAATCA+TGG 0.525914 1.2:+4516652 MS.gene044076:CDS
TGGTGATTTACTCCAACAAA+AGG 0.525957 1.2:-4517096 None:intergenic
TCAGGATAACGAATGGTTGA+AGG 0.526171 1.2:+4517458 MS.gene044076:CDS
TGGATCCTCGTTTGAAAAGG+AGG 0.528466 1.2:+4516719 MS.gene044076:CDS
GGGTATGAGAATATGACATT+TGG 0.528947 1.2:+4516811 MS.gene044076:CDS
AAAGATGAAATGCCTAAGGT+TGG 0.530444 1.2:+4516373 None:intergenic
TTCCAAAAGCTCGCCATCGA+TGG 0.531681 1.2:+4517280 MS.gene044076:CDS
TTGGGCAGATGCGAGATGTA+GGG 0.538615 1.2:+4516996 MS.gene044076:CDS
TGTTGTGAACAGCCAAGTAA+AGG 0.547394 1.2:-4517172 None:intergenic
TAACTCCAAAACCTATAGAC+CGG 0.548272 1.2:-4516447 None:intergenic
AGGATACTAAGACCTTTACT+TGG 0.548532 1.2:+4517160 MS.gene044076:CDS
CAGGATAACGAATGGTTGAA+GGG 0.548682 1.2:+4517459 MS.gene044076:CDS
ATCAAAACCACATTTAATCA+GGG 0.552351 1.2:-4518075 None:intergenic
TTACTTGGCTGTTCACAACA+TGG 0.555090 1.2:+4517175 MS.gene044076:CDS
ATTCCAAGAATTTCAAGTGG+AGG 0.555252 1.2:+4517764 MS.gene044076:CDS
TTCAGGGCATGTTTCTTGAG+AGG 0.556231 1.2:-4518237 None:intergenic
ATTGAAAGATAAAGTTGAGA+AGG 0.561801 1.2:+4517644 MS.gene044076:CDS
CTTTACTTCGAGTCGGTACA+GGG 0.564479 1.2:-4518310 None:intergenic
TTAGAACTCAATGATCAAGC+TGG 0.567016 1.2:+4516742 MS.gene044076:CDS
AAAGTGCGGAGACTGCGACT+TGG 0.575984 1.2:+4516862 MS.gene044076:CDS
TCGCTTCAACAACTATAGAT+CGG 0.588019 1.2:-4516786 None:intergenic
ACATGGTTGGAATGCATGCA+TGG 0.592737 1.2:+4517192 MS.gene044076:CDS
TTGAACTTCAGGATAACGAA+TGG 0.592982 1.2:+4517451 MS.gene044076:CDS
TCATAAAGATGAAATGCCTA+AGG 0.597014 1.2:+4516369 None:intergenic
ACACCATGATTCATGACTTG+AGG 0.597741 1.2:-4518873 None:intergenic
AGGCATACCCTGATTAAATG+TGG 0.605223 1.2:+4518068 MS.gene044076:CDS
TATTTGATGAAAGAAATCGT+TGG 0.605775 1.2:+4517484 MS.gene044076:CDS
AACTCCAAAACCTATAGACC+GGG 0.618933 1.2:-4516446 None:intergenic
CTGTTAGCTTAAGCACACAA+AGG 0.625605 1.2:-4517983 None:intergenic
TGCGAGAAAATATAAGAGGA+CGG 0.628214 1.2:-4518023 None:intergenic
AGTATTACAAGAGTTATGCC+CGG 0.630025 1.2:+4516428 MS.gene044076:CDS
AGTGCGGAGACTGCGACTTG+GGG 0.633117 1.2:+4516864 MS.gene044076:CDS
TAAAGTTGAGAAGGAAAACA+TGG 0.634633 1.2:+4517653 MS.gene044076:CDS
TATGCCACAAACACCATCGA+TGG 0.638359 1.2:-4517293 None:intergenic
TTTACTCTAGCATGTAGTCG+TGG 0.642195 1.2:+4516511 MS.gene044076:CDS
AAAATTCCAAGAATTTCAAG+TGG 0.644675 1.2:+4517761 MS.gene044076:CDS
ACTTGGGGTTGGAGATGCTG+AGG 0.644897 1.2:+4516879 MS.gene044076:CDS
GGAGGAAGGATATAAGGCAA+AGG 0.645520 1.2:+4518048 MS.gene044076:CDS
AGGATAACGAATGGTTGAAG+GGG 0.650586 1.2:+4517460 MS.gene044076:CDS
TTTGTTGGAGTAAATCACCA+TGG 0.661689 1.2:+4517099 MS.gene044076:CDS
CTTGCAATTTAGATGCACAC+AGG 0.664144 1.2:-4518521 None:intergenic
TTTAGGAGGAATGAACATGG+TGG 0.670141 1.2:+4518698 MS.gene044076:CDS
CGTGTTGTTGATGATGACGA+TGG 0.670761 1.2:-4519025 None:intergenic
ATGTGCTTTACTGTCAAGCG+AGG 0.675011 1.2:+4517140 MS.gene044076:CDS
CCAACAACACAGATTGACCA+TGG 0.675112 1.2:-4517116 None:intergenic
GGACGCCCTTTACTTCGAGT+CGG 0.676619 1.2:-4518317 None:intergenic
GGAACTATATAGATAAAGTG+CGG 0.685509 1.2:+4516848 MS.gene044076:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAAAAAAAACATAAG+AGG - chr1.2:4518939-4518958 None:intergenic 10.0%
!!! TTATTACATGTATGTTTTTA+GGG + chr1.2:4518662-4518681 MS.gene044076:intron 15.0%
!!! TTCATATTTTGAATTATTAC+AGG + chr1.2:4518896-4518915 MS.gene044076:CDS 15.0%
!!! TTTATTACATGTATGTTTTT+AGG + chr1.2:4518661-4518680 MS.gene044076:intron 15.0%
!!! TTTTAGAAGTAATAAGATTT+TGG + chr1.2:4516699-4516718 MS.gene044076:CDS 15.0%
!!! GTCTAATTTTCAATATTTGA+TGG + chr1.2:4518493-4518512 MS.gene044076:intron 20.0%
!!! TATTACATGTATGTTTTTAG+GGG + chr1.2:4518663-4518682 MS.gene044076:intron 20.0%
!!! TCGTTTAAGAAATGTATTTT+GGG + chr1.2:4516978-4516997 MS.gene044076:CDS 20.0%
!!! TGATTTTGGTTCATTTAATA+CGG + chr1.2:4517677-4517696 MS.gene044076:CDS 20.0%
! AAAATTCCAAGAATTTCAAG+TGG + chr1.2:4517761-4517780 MS.gene044076:CDS 25.0%
! AATTAAAGACATAGTGTTTG+AGG + chr1.2:4517881-4517900 MS.gene044076:CDS 25.0%
! ACTAAACTTAGTAGCAAAAA+TGG + chr1.2:4516469-4516488 MS.gene044076:CDS 25.0%
! ATCAAAACCACATTTAATCA+GGG - chr1.2:4518078-4518097 None:intergenic 25.0%
! ATTGAAAGATAAAGTTGAGA+AGG + chr1.2:4517644-4517663 MS.gene044076:CDS 25.0%
! ATTGTCTTGATCAGTTATTA+TGG - chr1.2:4517232-4517251 None:intergenic 25.0%
! ATTTGATGAAAGAAATCGTT+GGG + chr1.2:4517485-4517504 MS.gene044076:CDS 25.0%
! CATCTTCTTCTATAATTTCA+GGG - chr1.2:4518256-4518275 None:intergenic 25.0%
! TATCAAAACCACATTTAATC+AGG - chr1.2:4518079-4518098 None:intergenic 25.0%
! TATTTGATGAAAGAAATCGT+TGG + chr1.2:4517484-4517503 MS.gene044076:CDS 25.0%
! TTTGAGTAAAAGTGATTTCA+TGG + chr1.2:4517401-4517420 MS.gene044076:CDS 25.0%
! TTTGTGGCATATAATGAAAA+AGG + chr1.2:4517305-4517324 MS.gene044076:CDS 25.0%
!! AAATTCTTGGAATTTTGCAT+TGG - chr1.2:4517757-4517776 None:intergenic 25.0%
!! AGTATTGAATTTGGATTGAA+GGG - chr1.2:4518740-4518759 None:intergenic 25.0%
!! GTCGTTTAAGAAATGTATTT+TGG + chr1.2:4516977-4516996 MS.gene044076:CDS 25.0%
!! TGTTGTTTGTTTCAATTCAA+AGG + chr1.2:4517942-4517961 MS.gene044076:CDS 25.0%
!!! AAGTATTGAATTTGGATTGA+AGG - chr1.2:4518741-4518760 None:intergenic 25.0%
!!! AATTTTCAATATTTGATGGC+AGG + chr1.2:4518497-4518516 MS.gene044076:intron 25.0%
!!! ATTACATGTATGTTTTTAGG+GGG + chr1.2:4518664-4518683 MS.gene044076:intron 25.0%
!!! CTCTGTCATTTTTTTTTTGA+AGG + chr1.2:4518982-4519001 MS.gene044076:intron 25.0%
!!! TAAAATAGCGTGTTTTGTTA+GGG - chr1.2:4516684-4516703 None:intergenic 25.0%
!!! TCACTCATAAGTATTGAATT+TGG - chr1.2:4518749-4518768 None:intergenic 25.0%
!!! TGTGGTTTTGATAATTTAGT+TGG + chr1.2:4518086-4518105 MS.gene044076:CDS 25.0%
AAAAAAAGAAGCCAAGTAAG+TGG + chr1.2:4518404-4518423 MS.gene044076:intron 30.0%
AAAGTGATTTCATGGAAAAG+TGG + chr1.2:4517409-4517428 MS.gene044076:CDS 30.0%
AAATCATCAAAGTCAACAAG+AGG + chr1.2:4518427-4518446 MS.gene044076:intron 30.0%
AAGTATGTTTCCTGTTATCT+AGG + chr1.2:4518839-4518858 MS.gene044076:intron 30.0%
AAGTGATTTCATGGAAAAGT+GGG + chr1.2:4517410-4517429 MS.gene044076:CDS 30.0%
AATGCGTGTATTTCTTTAGA+CGG + chr1.2:4516610-4516629 MS.gene044076:CDS 30.0%
ACTTATGAGTGAAGTATATC+AGG + chr1.2:4518757-4518776 MS.gene044076:CDS 30.0%
AGTATGAACTCATTCTTTGA+TGG + chr1.2:4517567-4517586 MS.gene044076:CDS 30.0%
ATCCACAATAATAATGTTCC+AGG - chr1.2:4518813-4518832 None:intergenic 30.0%
CCATCTTCTTCTATAATTTC+AGG - chr1.2:4518257-4518276 None:intergenic 30.0%
CCTGAAATTATAGAAGAAGA+TGG + chr1.2:4518254-4518273 MS.gene044076:CDS 30.0%
CTAAATATAGTTCCAACCTT+AGG - chr1.2:4516388-4516407 None:intergenic 30.0%
GGAACTATATAGATAAAGTG+CGG + chr1.2:4516848-4516867 MS.gene044076:CDS 30.0%
TAAAATGGAACCTAGATAAC+AGG - chr1.2:4518852-4518871 None:intergenic 30.0%
TAAAGTTGAGAAGGAAAACA+TGG + chr1.2:4517653-4517672 MS.gene044076:CDS 30.0%
TATAACAAAAATCCAGTGCA+AGG + chr1.2:4516579-4516598 MS.gene044076:CDS 30.0%
TGAATAAACTTGCGAAAAAG+AGG + chr1.2:4518378-4518397 MS.gene044076:CDS 30.0%
TGATCAGTTATTATGGCATT+TGG - chr1.2:4517225-4517244 None:intergenic 30.0%
TTCATGACTTGAGGATAAAA+TGG - chr1.2:4518867-4518886 None:intergenic 30.0%
TTCCTGGAACATTATTATTG+TGG + chr1.2:4518808-4518827 MS.gene044076:intron 30.0%
! ATATGTGAGAGACACATTTT+GGG + chr1.2:4517515-4517534 MS.gene044076:CDS 30.0%
! CACAATTTGATCAACTTTTG+AGG - chr1.2:4518360-4518379 None:intergenic 30.0%
! GAATATGACATTTGGTGAAA+AGG + chr1.2:4516819-4516838 MS.gene044076:CDS 30.0%
! GATTGAAGATTTTGAACTTC+AGG + chr1.2:4517440-4517459 MS.gene044076:CDS 30.0%
! TTTGATGATTTCCACTTACT+TGG - chr1.2:4518418-4518437 None:intergenic 30.0%
!! ATAGCTTGTGTAAGTCATTT+TGG + chr1.2:4517702-4517721 MS.gene044076:CDS 30.0%
!! CTAAAATAGCGTGTTTTGTT+AGG - chr1.2:4516685-4516704 None:intergenic 30.0%
!! GTTCAAGTAGTTGATAAAGT+TGG + chr1.2:4518549-4518568 MS.gene044076:CDS 30.0%
!! TTGCACTGGATTTTTGTTAT+AGG - chr1.2:4516580-4516599 None:intergenic 30.0%
!!! ACTTACTTGGCTTCTTTTTT+TGG - chr1.2:4518405-4518424 None:intergenic 30.0%
!!! TTACATGTATGTTTTTAGGG+GGG + chr1.2:4518665-4518684 MS.gene044076:intron 30.0%
AAAAAGGTTCCAGAAAAGCT+AGG + chr1.2:4517321-4517340 MS.gene044076:CDS 35.0%
AGGATACTAAGACCTTTACT+TGG + chr1.2:4517160-4517179 MS.gene044076:CDS 35.0%
AGTAGCAAAAATGGAGATGA+TGG + chr1.2:4516478-4516497 MS.gene044076:CDS 35.0%
AGTATTACAAGAGTTATGCC+CGG + chr1.2:4516428-4516447 MS.gene044076:CDS 35.0%
ATTGCTCTTGAGCATAATCA+TGG + chr1.2:4516652-4516671 MS.gene044076:CDS 35.0%
CTATAGTTGTTGAAGCGAAT+GGG + chr1.2:4516791-4516810 MS.gene044076:CDS 35.0%
CTCAAAGTCTTTCTCATTGA+AGG - chr1.2:4517910-4517929 None:intergenic 35.0%
GGGTATGAGAATATGACATT+TGG + chr1.2:4516811-4516830 MS.gene044076:CDS 35.0%
TAACTCCAAAACCTATAGAC+CGG - chr1.2:4516450-4516469 None:intergenic 35.0%
TATCCTCAAGTCATGAATCA+TGG + chr1.2:4518870-4518889 MS.gene044076:CDS 35.0%
TCATGCTTGCTTTGATAGAT+TGG + chr1.2:4517806-4517825 MS.gene044076:CDS 35.0%
TCGCTTCAACAACTATAGAT+CGG - chr1.2:4516789-4516808 None:intergenic 35.0%
TCTATAGTTGTTGAAGCGAA+TGG + chr1.2:4516790-4516809 MS.gene044076:CDS 35.0%
TGCCATGAAAAATGCAATTG+CGG + chr1.2:4517251-4517270 MS.gene044076:CDS 35.0%
TGCGAGAAAATATAAGAGGA+CGG - chr1.2:4518026-4518045 None:intergenic 35.0%
TGGTGATTTACTCCAACAAA+AGG - chr1.2:4517099-4517118 None:intergenic 35.0%
TTAGAACTCAATGATCAAGC+TGG + chr1.2:4516742-4516761 MS.gene044076:CDS 35.0%
TTGAACTTCAGGATAACGAA+TGG + chr1.2:4517451-4517470 MS.gene044076:CDS 35.0%
TTTGTTGGAGTAAATCACCA+TGG + chr1.2:4517099-4517118 MS.gene044076:CDS 35.0%
! AGGGCTGCATATGAATATTT+TGG + chr1.2:4517015-4517034 MS.gene044076:CDS 35.0%
! ATCCGCAATTGCATTTTTCA+TGG - chr1.2:4517256-4517275 None:intergenic 35.0%
! ATTCCAAGAATTTCAAGTGG+AGG + chr1.2:4517764-4517783 MS.gene044076:CDS 35.0%
! CATATGTGAGAGACACATTT+TGG + chr1.2:4517514-4517533 MS.gene044076:CDS 35.0%
! CATTTGGTGAAAAGGATTGT+AGG + chr1.2:4516827-4516846 MS.gene044076:CDS 35.0%
! CTTTTACGAAGTTGCTTCTA+CGG + chr1.2:4518148-4518167 MS.gene044076:CDS 35.0%
! TTTGAGGACTTCCTTTTTGA+AGG - chr1.2:4518344-4518363 None:intergenic 35.0%
! TTTTGGATCCTCGTTTGAAA+AGG + chr1.2:4516716-4516735 MS.gene044076:CDS 35.0%
!! AAGGAAAACATGGCTGATTT+TGG + chr1.2:4517663-4517682 MS.gene044076:CDS 35.0%
!!! AGTTTTAGGAGGAATGAACA+TGG + chr1.2:4518695-4518714 MS.gene044076:CDS 35.0%
AACTCCAAAACCTATAGACC+GGG - chr1.2:4516449-4516468 None:intergenic 40.0%
AATGTGTCTCTCACATATGC+AGG - chr1.2:4517513-4517532 None:intergenic 40.0%
ACACCATGATTCATGACTTG+AGG - chr1.2:4518876-4518895 None:intergenic 40.0%
ACTCCAACAAAAGGAGCAAA+TGG - chr1.2:4517090-4517109 None:intergenic 40.0%
AGGATAACGAATGGTTGAAG+GGG + chr1.2:4517460-4517479 MS.gene044076:CDS 40.0%
AGGCATACCCTGATTAAATG+TGG + chr1.2:4518068-4518087 MS.gene044076:CDS 40.0%
CAACCTCCACTTGAAATTCT+TGG - chr1.2:4517770-4517789 None:intergenic 40.0%
CAGGATAACGAATGGTTGAA+GGG + chr1.2:4517459-4517478 MS.gene044076:CDS 40.0%
CCACTGCGAGAAAATATAAG+AGG - chr1.2:4518030-4518049 None:intergenic 40.0%
CGTAGAAGCAACTTCGTAAA+AGG - chr1.2:4518150-4518169 None:intergenic 40.0%
CTTGCAATTTAGATGCACAC+AGG - chr1.2:4518524-4518543 None:intergenic 40.0%
CTTTGTGTGCTTAAGCTAAC+AGG + chr1.2:4517984-4518003 MS.gene044076:CDS 40.0%
GCTTGCTTTGATAGATTGGA+AGG + chr1.2:4517810-4517829 MS.gene044076:CDS 40.0%
TCAGGATAACGAATGGTTGA+AGG + chr1.2:4517458-4517477 MS.gene044076:CDS 40.0%
TGTTGTGAACAGCCAAGTAA+AGG - chr1.2:4517175-4517194 None:intergenic 40.0%
TTACTTGGCTGTTCACAACA+TGG + chr1.2:4517175-4517194 MS.gene044076:CDS 40.0%
TTTACTCTAGCATGTAGTCG+TGG + chr1.2:4516511-4516530 MS.gene044076:CDS 40.0%
TTTAGGAGGAATGAACATGG+TGG + chr1.2:4518698-4518717 MS.gene044076:CDS 40.0%
! CATGGTCAATCTGTGTTGTT+GGG + chr1.2:4517117-4517136 MS.gene044076:CDS 40.0%
! CCTCTTATATTTTCTCGCAG+TGG + chr1.2:4518027-4518046 MS.gene044076:CDS 40.0%
! CTGTTAGCTTAAGCACACAA+AGG - chr1.2:4517986-4518005 None:intergenic 40.0%
! CTTATATTTTCTCGCAGTGG+AGG + chr1.2:4518030-4518049 MS.gene044076:CDS 40.0%
! TCTAACCTCCTTTTCAAACG+AGG - chr1.2:4516727-4516746 None:intergenic 40.0%
! TTGCATTGGTGAATGCTTTC+TGG - chr1.2:4517743-4517762 None:intergenic 40.0%
!! ATGCCATTTGCTCCTTTTGT+TGG + chr1.2:4517084-4517103 MS.gene044076:CDS 40.0%
!! TGGTGAATGCTTTCTGGAAT+TGG - chr1.2:4517737-4517756 None:intergenic 40.0%
AAGAGTTATGCCCGGTCTAT+AGG + chr1.2:4516436-4516455 MS.gene044076:CDS 45.0%
ACATGGTTGGAATGCATGCA+TGG + chr1.2:4517192-4517211 MS.gene044076:CDS 45.0%
ATGTGCTTTACTGTCAAGCG+AGG + chr1.2:4517140-4517159 MS.gene044076:CDS 45.0%
CCAACAACACAGATTGACCA+TGG - chr1.2:4517119-4517138 None:intergenic 45.0%
CCATGGTCAATCTGTGTTGT+TGG + chr1.2:4517116-4517135 MS.gene044076:CDS 45.0%
CTTTACTTCGAGTCGGTACA+GGG - chr1.2:4518313-4518332 None:intergenic 45.0%
GGAGGAAGGATATAAGGCAA+AGG + chr1.2:4518048-4518067 MS.gene044076:CDS 45.0%
TATGCCACAAACACCATCGA+TGG - chr1.2:4517296-4517315 None:intergenic 45.0%
TGGATCCTCGTTTGAAAAGG+AGG + chr1.2:4516719-4516738 MS.gene044076:CDS 45.0%
TTCAGGGCATGTTTCTTGAG+AGG - chr1.2:4518240-4518259 None:intergenic 45.0%
TTGGCTGTTCACAACATGGT+TGG + chr1.2:4517179-4517198 MS.gene044076:CDS 45.0%
! TATGCCCGGTCTATAGGTTT+TGG + chr1.2:4516442-4516461 MS.gene044076:CDS 45.0%
! TATTTTCTCGCAGTGGAGGA+AGG + chr1.2:4518034-4518053 MS.gene044076:CDS 45.0%
! TCCAGGAAACTAAAGAGCAC+TGG - chr1.2:4518796-4518815 None:intergenic 45.0%
! TCCAGTGCTCTTTAGTTTCC+TGG + chr1.2:4518792-4518811 MS.gene044076:intron 45.0%
! TGTGAGAGACACATTTTGGG+CGG + chr1.2:4517518-4517537 MS.gene044076:CDS 45.0%
!! CATTCAATCTAGCCTTGCAC+TGG - chr1.2:4516594-4516613 None:intergenic 45.0%
!! CGTGTTGTTGATGATGACGA+TGG - chr1.2:4519028-4519047 None:intergenic 45.0%
!! CTGTACCGACTCGAAGTAAA+GGG + chr1.2:4518312-4518331 MS.gene044076:CDS 45.0%
!! GAGGACTTCCTTTTTGAAGG+AGG - chr1.2:4518341-4518360 None:intergenic 45.0%
!! GAGTGTCTACCTAGCTTTTC+TGG - chr1.2:4517333-4517352 None:intergenic 45.0%
!!! AGGGGGGACACATTAGTTTT+AGG + chr1.2:4518681-4518700 MS.gene044076:intron 45.0%
!!! GGGGACACATTAGTTTTAGG+AGG + chr1.2:4518684-4518703 MS.gene044076:CDS 45.0%
CCTTTACTTCGAGTCGGTAC+AGG - chr1.2:4518314-4518333 None:intergenic 50.0%
CGCAGTGGAGGAAGGATATA+AGG + chr1.2:4518042-4518061 MS.gene044076:CDS 50.0%
TTCCAAAAGCTCGCCATCGA+TGG + chr1.2:4517280-4517299 MS.gene044076:CDS 50.0%
TTGGGCAGATGCGAGATGTA+GGG + chr1.2:4516996-4517015 MS.gene044076:CDS 50.0%
TTTGGGCAGATGCGAGATGT+AGG + chr1.2:4516995-4517014 MS.gene044076:CDS 50.0%
! GTGAGAGACACATTTTGGGC+GGG + chr1.2:4517519-4517538 MS.gene044076:CDS 50.0%
!! AAGGGCGTCCTCCTTCAAAA+AGG + chr1.2:4518330-4518349 MS.gene044076:CDS 50.0%
!! CCTGTACCGACTCGAAGTAA+AGG + chr1.2:4518311-4518330 MS.gene044076:CDS 50.0%
AAAGTGCGGAGACTGCGACT+TGG + chr1.2:4516862-4516881 MS.gene044076:CDS 55.0%
AAGTGCGGAGACTGCGACTT+GGG + chr1.2:4516863-4516882 MS.gene044076:CDS 55.0%
ACTTGGGGTTGGAGATGCTG+AGG + chr1.2:4516879-4516898 MS.gene044076:CDS 55.0%
CTCGCCATCGATGGTGTTTG+TGG + chr1.2:4517289-4517308 MS.gene044076:CDS 55.0%
GGACGCCCTTTACTTCGAGT+CGG - chr1.2:4518320-4518339 None:intergenic 55.0%
! CACCATCGATGGCGAGCTTT+TGG - chr1.2:4517285-4517304 None:intergenic 55.0%
AGTGCGGAGACTGCGACTTG+GGG + chr1.2:4516864-4516883 MS.gene044076:CDS 60.0%
! CGGAGACTGCGACTTGGGGT+TGG + chr1.2:4516868-4516887 MS.gene044076:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 4516382 4519057 4516382 ID=MS.gene044076
chr1.2 mRNA 4516382 4519057 4516382 ID=MS.gene044076.t1;Parent=MS.gene044076
chr1.2 exon 4516382 4518418 4516382 ID=MS.gene044076.t1.exon1;Parent=MS.gene044076.t1
chr1.2 CDS 4516382 4518418 4516382 ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2 exon 4518519 4518590 4518519 ID=MS.gene044076.t1.exon2;Parent=MS.gene044076.t1
chr1.2 CDS 4518519 4518590 4518519 ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2 exon 4518683 4518778 4518683 ID=MS.gene044076.t1.exon3;Parent=MS.gene044076.t1
chr1.2 CDS 4518683 4518778 4518683 ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2 exon 4518861 4518917 4518861 ID=MS.gene044076.t1.exon4;Parent=MS.gene044076.t1
chr1.2 CDS 4518861 4518917 4518861 ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2 exon 4519004 4519057 4519004 ID=MS.gene044076.t1.exon5;Parent=MS.gene044076.t1
chr1.2 CDS 4519004 4519057 4519004 ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
Gene Sequence

>MS.gene044076

ATGCCTAAGGTTGGAACTATATTTAGCTCTAAAGAAGAACTTGAAGAGTATTACAAGAGTTATGCCCGGTCTATAGGTTTTGGAGTTACTAAACTTAGTAGCAAAAATGGAGATGATGGAAAAAAGTATTTTACTCTAGCATGTAGTCGTGGAACAAAGTATGTGAGTAAATCAAAGAAGCTTTTGAAGTCAAATCCTATAACAAAAATCCAGTGCAAGGCTAGATTGAATGCGTGTATTTCTTTAGACGGAACAGTTACTATTTCAAAAATTGCTCTTGAGCATAATCATGGTCTAAGCCCTAACAAAACACGCTATTTTAGAAGTAATAAGATTTTGGATCCTCGTTTGAAAAGGAGGTTAGAACTCAATGATCAAGCTGGAATAAATGTGAGCAGAAATTTCCGATCTATAGTTGTTGAAGCGAATGGGTATGAGAATATGACATTTGGTGAAAAGGATTGTAGGAACTATATAGATAAAGTGCGGAGACTGCGACTTGGGGTTGGAGATGCTGAGGCGATTCAAAATTATTTTGTTAAAATGCAAAAGCAAAATAGTCAATTCTATTATATAATAGACATTGATGATAAAAGTCGTTTAAGAAATGTATTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGATGTCGTAACATTTGACACTACTTACTTAACAAATAAATATGACATGCCATTTGCTCCTTTTGTTGGAGTAAATCACCATGGTCAATCTGTGTTGTTGGGATGTGCTTTACTGTCAAGCGAGGATACTAAGACCTTTACTTGGCTGTTCACAACATGGTTGGAATGCATGCATGGACGTGCTCCAAATGCCATAATAACTGATCAAGACAATGCCATGAAAAATGCAATTGCGGATGTTTTTCCAAAAGCTCGCCATCGATGGTGTTTGTGGCATATAATGAAAAAGGTTCCAGAAAAGCTAGGTAGACACTCTCATTATGAGTCTATCAAAGAACTTTTGCATGATGCTGTATACGATTCTTTGAGTAAAAGTGATTTCATGGAAAAGTGGGAAAGAATGATTGAAGATTTTGAACTTCAGGATAACGAATGGTTGAAGGGGCTATTTGATGAAAGAAATCGTTGGGTTCCTGCATATGTGAGAGACACATTTTGGGCGGGCATGTCAACGACTCAAAGAAGTGAAAGTATGAACTCATTCTTTGATGGTTATGTAAATTCAAAGACAACATTGAAGCAATTTGTTGAACAATATGACAATGCATTGAAAGATAAAGTTGAGAAGGAAAACATGGCTGATTTTGGTTCATTTAATACGGTGATAGCTTGTGTAAGTCATTTTGGCTTTGAGTTCCAATTCCAGAAAGCATTCACCAATGCAAAATTCCAAGAATTTCAAGTGGAGGTTGCTTCTATGATTTATTGTCATGCTTGCTTTGATAGATTGGAAGGATCGAATTCTATATATTCTGTTATAGAAAGCAAGAAAAAATTTGACACAATTAAAGACATAGTGTTTGAGGTATCCTTCAATGAGAAAGACTTTGAGTTACAATGTATGTGTTGTTTGTTTCAATTCAAAGGTATTTTATGCAGACACATCCTTTGTGTGCTTAAGCTAACAGGAAAAACAGAGTCATTGCCGTCCTCTTATATTTTCTCGCAGTGGAGGAAGGATATAAGGCAAAGGCATACCCTGATTAAATGTGGTTTTGATAATTTAGTTGGAAATGCTGAATTGCAAAGAGTTGATAAAGCTTGTTCTTCCTTTTACGAAGTTGCTTCTACGGTGATAAATAACGATAATGATTTGTCGAAAATGATGAATCTAATCAAGAAAATAAAAAGTGAGTTTACCTCTCAAGAAACATGCCCTGAAATTATAGAAGAAGATGGTTTAGTTCATAATCAAGTGACTAAAATTCTTGACCCTGTACCGACTCGAAGTAAAGGGCGTCCTCCTTCAAAAAGGAAGTCCTCAAAAGTTGATCAAATTGTGAATAAACTTGCGAAAAAGAGGACCAAAAAAAGAAGCCAAGTAAGTGGAAATCATCAAAGTCAACAAGAGGTAATTTAAGATACGTGTACATCTAAATTAATAATTTTGAATATGTCTAATTTTCAATATTTGATGGCAGGACCTGTGTGCATCTAAATTGCAAGAGAGTGTTCAAGTAGTTGATAAAGTTGGCACACAAGAGAGCATTCAAGTAAGTAATTTTATTTATTCTCAGCTTTAGTTTTAAACAATCAATGAGAACTACATACTGATTGTCTATGTTTATTACATGTATGTTTTTAGGGGGGACACATTAGTTTTAGGAGGAATGAACATGGTGGAGTAAATAATTTAGCTCCCTTCAATCCAAATTCAATACTTATGAGTGAAGTATATCAGGTGCAAGCATAAATCCAGTGCTCTTTAGTTTCCTGGAACATTATTATTGTGGATTCTAACAAGTATGTTTCCTGTTATCTAGGTTCCATTTTATCCTCAAGTCATGAATCATGGTGTTTCATATTTTGAATTATTACAGGTACTTGATCTTTATCGTCCTCTTATGTTTTTTTTAATTAAATATTTTGATATAAATTCATCAACTCTGTCATTTTTTTTTTGAAGGCACAACATCATGTGAATGATCCATCGTCATCATCAACAACACGTGAATCATAA
Protein sequence

>MS.gene044076.t1

MPKVGTIFSSKEELEEYYKSYARSIGFGVTKLSSKNGDDGKKYFTLACSRGTKYVSKSKKLLKSNPITKIQCKARLNACISLDGTVTISKIALEHNHGLSPNKTRYFRSNKILDPRLKRRLELNDQAGINVSRNFRSIVVEANGYENMTFGEKDCRNYIDKVRRLRLGVGDAEAIQNYFVKMQKQNSQFYYIIDIDDKSRLRNVFWADARCRAAYEYFGDVVTFDTTYLTNKYDMPFAPFVGVNHHGQSVLLGCALLSSEDTKTFTWLFTTWLECMHGRAPNAIITDQDNAMKNAIADVFPKARHRWCLWHIMKKVPEKLGRHSHYESIKELLHDAVYDSLSKSDFMEKWERMIEDFELQDNEWLKGLFDERNRWVPAYVRDTFWAGMSTTQRSESMNSFFDGYVNSKTTLKQFVEQYDNALKDKVEKENMADFGSFNTVIACVSHFGFEFQFQKAFTNAKFQEFQVEVASMIYCHACFDRLEGSNSIYSVIESKKKFDTIKDIVFEVSFNEKDFELQCMCCLFQFKGILCRHILCVLKLTGKTESLPSSYIFSQWRKDIRQRHTLIKCGFDNLVGNAELQRVDKACSSFYEVASTVINNDNDLSKMMNLIKKIKSEFTSQETCPEIIEEDGLVHNQVTKILDPVPTRSKGRPPSKRKSSKVDQIVNKLAKKRTKKRSQDLCASKLQESVQVVDKVGTQESIQGGHISFRRNEHGGVNNLAPFNPNSILMSEVYQVPFYPQVMNHGVSYFELLQAQHHVNDPSSSSTTRES