AlfalfaGEDB | MS.gene044076

M. sativa cultivar XinJiangDaYe / MS.gene044076

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044076.t1	ABD33026.2	70.4	781	196	4	2	764	352	1115	0.00E+00	1122.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044076.t1	Q9SWG3	31.4	732	464	12	2	722	51	755	1.6e-106	388.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044076.t1	Q2HSZ7	70.4	781	196	4	2	764	352	1115	0.0e+00	1122.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene044076.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044076.t1	MTR_6g051425	33.333	273	173	4	4	267	19	291	7.50e-40	150
MS.gene044076.t1	MTR_7g446060	72.527	91	25	0	79	169	2	92	8.16e-40	143
MS.gene044076.t1	MTR_2g090105	47.283	184	81	6	580	761	16	185	5.37e-38	140
MS.gene044076.t1	MTR_7g031620	79.268	82	17	0	7	88	1	82	6.19e-35	127
MS.gene044076.t1	MTR_5g023310	41.401	157	25	2	133	289	16	105	1.05e-29	114
MS.gene044076.t1	MTR_0558s0020	29.457	258	154	7	7	238	41	296	1.59e-25	107
MS.gene044076.t1	MTR_4g035820	32.422	256	154	9	1	242	74	324	5.03e-25	111
MS.gene044076.t1	MTR_8g446020	29.834	181	121	3	62	238	78	256	3.05e-20	91.7
MS.gene044076.t1	MTR_0856s0010	36.220	127	80	1	2	127	34	160	6.39e-19	85.1
MS.gene044076.t1	MTR_6g090505	29.444	180	121	3	62	237	53	230	5.39e-17	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044076.t1	AT4G15090	31.319	728	470	12	2	722	51	755	5.99e-124	391
MS.gene044076.t1	AT4G15090	31.319	728	470	12	2	722	51	755	5.99e-124	391
MS.gene044076.t1	AT4G15090	31.319	728	470	12	2	722	51	755	5.99e-124	391
MS.gene044076.t1	AT4G15090	31.319	728	470	12	2	722	51	755	5.99e-124	391
MS.gene044076.t1	AT4G15090	31.319	728	470	12	2	722	51	755	5.99e-124	391
MS.gene044076.t1	AT4G38180	35.951	573	343	10	2	561	73	634	1.30e-116	370
MS.gene044076.t1	AT1G76320	36.427	571	327	11	8	566	3	549	5.53e-114	360
MS.gene044076.t1	AT1G76320	36.427	571	327	11	8	566	3	549	1.56e-113	361
MS.gene044076.t1	AT1G76320	36.427	571	327	11	8	566	3	549	1.56e-113	361
MS.gene044076.t1	AT1G76320	36.427	571	327	11	8	566	3	549	1.63e-113	361

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Find 106 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCAAGAATTTCAAG+TGG	0.644675	1.2:+4517761	MS.gene044076:CDS
AAAGATGAAATGCCTAAGGT+TGG	0.530444	1.2:+4516373	None:intergenic
AAAGTGATTTCATGGAAAAG+TGG	0.450883	1.2:+4517409	MS.gene044076:CDS
AAAGTGCGGAGACTGCGACT+TGG	0.575984	1.2:+4516862	MS.gene044076:CDS
AACTCCAAAACCTATAGACC+GGG	0.618933	1.2:-4516446	None:intergenic
AAGAGTTATGCCCGGTCTAT+AGG	0.361091	1.2:+4516436	MS.gene044076:CDS
AAGGAAAACATGGCTGATTT+TGG	0.228183	1.2:+4517663	MS.gene044076:CDS
AAGGGCGTCCTCCTTCAAAA+AGG	0.415773	1.2:+4518330	MS.gene044076:CDS
AAGTATTGAATTTGGATTGA+AGG	0.452798	1.2:-4518738	None:intergenic
AAGTGATTTCATGGAAAAGT+GGG	0.506412	1.2:+4517410	MS.gene044076:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGAAGCCAAGTAAG+TGG	+	chr1.2:4518404-4518423	MS.gene044076:intron	30.0%
AAAGTGATTTCATGGAAAAG+TGG	+	chr1.2:4517409-4517428	MS.gene044076:CDS	30.0%
AAATCATCAAAGTCAACAAG+AGG	+	chr1.2:4518427-4518446	MS.gene044076:intron	30.0%
AAGTATGTTTCCTGTTATCT+AGG	+	chr1.2:4518839-4518858	MS.gene044076:intron	30.0%
AAGTGATTTCATGGAAAAGT+GGG	+	chr1.2:4517410-4517429	MS.gene044076:CDS	30.0%
AATGCGTGTATTTCTTTAGA+CGG	+	chr1.2:4516610-4516629	MS.gene044076:CDS	30.0%
ACTTATGAGTGAAGTATATC+AGG	+	chr1.2:4518757-4518776	MS.gene044076:CDS	30.0%
AGTATGAACTCATTCTTTGA+TGG	+	chr1.2:4517567-4517586	MS.gene044076:CDS	30.0%
ATCCACAATAATAATGTTCC+AGG	-	chr1.2:4518813-4518832	None:intergenic	30.0%
CCATCTTCTTCTATAATTTC+AGG	-	chr1.2:4518257-4518276	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	4516382	4519057	4516382	ID=MS.gene044076
chr1.2	mRNA	4516382	4519057	4516382	ID=MS.gene044076.t1;Parent=MS.gene044076
chr1.2	exon	4516382	4518418	4516382	ID=MS.gene044076.t1.exon1;Parent=MS.gene044076.t1
chr1.2	CDS	4516382	4518418	4516382	ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2	exon	4518519	4518590	4518519	ID=MS.gene044076.t1.exon2;Parent=MS.gene044076.t1
chr1.2	CDS	4518519	4518590	4518519	ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2	exon	4518683	4518778	4518683	ID=MS.gene044076.t1.exon3;Parent=MS.gene044076.t1
chr1.2	CDS	4518683	4518778	4518683	ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2	exon	4518861	4518917	4518861	ID=MS.gene044076.t1.exon4;Parent=MS.gene044076.t1
chr1.2	CDS	4518861	4518917	4518861	ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1
chr1.2	exon	4519004	4519057	4519004	ID=MS.gene044076.t1.exon5;Parent=MS.gene044076.t1
chr1.2	CDS	4519004	4519057	4519004	ID=cds.MS.gene044076.t1;Parent=MS.gene044076.t1

Gene Sequence

>MS.gene044076

ATGCCTAAGGTTGGAACTATATTTAGCTCTAAAGAAGAACTTGAAGAGTATTACAAGAGTTATGCCCGGTCTATAGGTTTTGGAGTTACTAAACTTAGTAGCAAAAATGGAGATGATGGAAAAAAGTATTTTACTCTAGCATGTAGTCGTGGAACAAAGTATGTGAGTAAATCAAAGAAGCTTTTGAAGTCAAATCCTATAACAAAAATCCAGTGCAAGGCTAGATTGAATGCGTGTATTTCTTTAGACGGAACAGTTACTATTTCAAAAATTGCTCTTGAGCATAATCATGGTCTAAGCCCTAACAAAACACGCTATTTTAGAAGTAATAAGATTTTGGATCCTCGTTTGAAAAGGAGGTTAGAACTCAATGATCAAGCTGGAATAAATGTGAGCAGAAATTTCCGATCTATAGTTGTTGAAGCGAATGGGTATGAGAATATGACATTTGGTGAAAAGGATTGTAGGAACTATATAGATAAAGTGCGGAGACTGCGACTTGGGGTTGGAGATGCTGAGGCGATTCAAAATTATTTTGTTAAAATGCAAAAGCAAAATAGTCAATTCTATTATATAATAGACATTGATGATAAAAGTCGTTTAAGAAATGTATTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGATGTCGTAACATTTGACACTACTTACTTAACAAATAAATATGACATGCCATTTGCTCCTTTTGTTGGAGTAAATCACCATGGTCAATCTGTGTTGTTGGGATGTGCTTTACTGTCAAGCGAGGATACTAAGACCTTTACTTGGCTGTTCACAACATGGTTGGAATGCATGCATGGACGTGCTCCAAATGCCATAATAACTGATCAAGACAATGCCATGAAAAATGCAATTGCGGATGTTTTTCCAAAAGCTCGCCATCGATGGTGTTTGTGGCATATAATGAAAAAGGTTCCAGAAAAGCTAGGTAGACACTCTCATTATGAGTCTATCAAAGAACTTTTGCATGATGCTGTATACGATTCTTTGAGTAAAAGTGATTTCATGGAAAAGTGGGAAAGAATGATTGAAGATTTTGAACTTCAGGATAACGAATGGTTGAAGGGGCTATTTGATGAAAGAAATCGTTGGGTTCCTGCATATGTGAGAGACACATTTTGGGCGGGCATGTCAACGACTCAAAGAAGTGAAAGTATGAACTCATTCTTTGATGGTTATGTAAATTCAAAGACAACATTGAAGCAATTTGTTGAACAATATGACAATGCATTGAAAGATAAAGTTGAGAAGGAAAACATGGCTGATTTTGGTTCATTTAATACGGTGATAGCTTGTGTAAGTCATTTTGGCTTTGAGTTCCAATTCCAGAAAGCATTCACCAATGCAAAATTCCAAGAATTTCAAGTGGAGGTTGCTTCTATGATTTATTGTCATGCTTGCTTTGATAGATTGGAAGGATCGAATTCTATATATTCTGTTATAGAAAGCAAGAAAAAATTTGACACAATTAAAGACATAGTGTTTGAGGTATCCTTCAATGAGAAAGACTTTGAGTTACAATGTATGTGTTGTTTGTTTCAATTCAAAGGTATTTTATGCAGACACATCCTTTGTGTGCTTAAGCTAACAGGAAAAACAGAGTCATTGCCGTCCTCTTATATTTTCTCGCAGTGGAGGAAGGATATAAGGCAAAGGCATACCCTGATTAAATGTGGTTTTGATAATTTAGTTGGAAATGCTGAATTGCAAAGAGTTGATAAAGCTTGTTCTTCCTTTTACGAAGTTGCTTCTACGGTGATAAATAACGATAATGATTTGTCGAAAATGATGAATCTAATCAAGAAAATAAAAAGTGAGTTTACCTCTCAAGAAACATGCCCTGAAATTATAGAAGAAGATGGTTTAGTTCATAATCAAGTGACTAAAATTCTTGACCCTGTACCGACTCGAAGTAAAGGGCGTCCTCCTTCAAAAAGGAAGTCCTCAAAAGTTGATCAAATTGTGAATAAACTTGCGAAAAAGAGGACCAAAAAAAGAAGCCAAGTAAGTGGAAATCATCAAAGTCAACAAGAGGTAATTTAAGATACGTGTACATCTAAATTAATAATTTTGAATATGTCTAATTTTCAATATTTGATGGCAGGACCTGTGTGCATCTAAATTGCAAGAGAGTGTTCAAGTAGTTGATAAAGTTGGCACACAAGAGAGCATTCAAGTAAGTAATTTTATTTATTCTCAGCTTTAGTTTTAAACAATCAATGAGAACTACATACTGATTGTCTATGTTTATTACATGTATGTTTTTAGGGGGGACACATTAGTTTTAGGAGGAATGAACATGGTGGAGTAAATAATTTAGCTCCCTTCAATCCAAATTCAATACTTATGAGTGAAGTATATCAGGTGCAAGCATAAATCCAGTGCTCTTTAGTTTCCTGGAACATTATTATTGTGGATTCTAACAAGTATGTTTCCTGTTATCTAGGTTCCATTTTATCCTCAAGTCATGAATCATGGTGTTTCATATTTTGAATTATTACAGGTACTTGATCTTTATCGTCCTCTTATGTTTTTTTTAATTAAATATTTTGATATAAATTCATCAACTCTGTCATTTTTTTTTTGAAGGCACAACATCATGTGAATGATCCATCGTCATCATCAACAACACGTGAATCATAA

Protein sequence

>MS.gene044076.t1

MPKVGTIFSSKEELEEYYKSYARSIGFGVTKLSSKNGDDGKKYFTLACSRGTKYVSKSKKLLKSNPITKIQCKARLNACISLDGTVTISKIALEHNHGLSPNKTRYFRSNKILDPRLKRRLELNDQAGINVSRNFRSIVVEANGYENMTFGEKDCRNYIDKVRRLRLGVGDAEAIQNYFVKMQKQNSQFYYIIDIDDKSRLRNVFWADARCRAAYEYFGDVVTFDTTYLTNKYDMPFAPFVGVNHHGQSVLLGCALLSSEDTKTFTWLFTTWLECMHGRAPNAIITDQDNAMKNAIADVFPKARHRWCLWHIMKKVPEKLGRHSHYESIKELLHDAVYDSLSKSDFMEKWERMIEDFELQDNEWLKGLFDERNRWVPAYVRDTFWAGMSTTQRSESMNSFFDGYVNSKTTLKQFVEQYDNALKDKVEKENMADFGSFNTVIACVSHFGFEFQFQKAFTNAKFQEFQVEVASMIYCHACFDRLEGSNSIYSVIESKKKFDTIKDIVFEVSFNEKDFELQCMCCLFQFKGILCRHILCVLKLTGKTESLPSSYIFSQWRKDIRQRHTLIKCGFDNLVGNAELQRVDKACSSFYEVASTVINNDNDLSKMMNLIKKIKSEFTSQETCPEIIEEDGLVHNQVTKILDPVPTRSKGRPPSKRKSSKVDQIVNKLAKKRTKKRSQDLCASKLQESVQVVDKVGTQESIQGGHISFRRNEHGGVNNLAPFNPNSILMSEVYQVPFYPQVMNHGVSYFELLQAQHHVNDPSSSSTTRES