AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044102

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044102.t1 MTR_1g018090 90.368 353 29 3 1 352 1 349 0.0 592
MS.gene044102.t1 MTR_1g018090 90.938 320 24 3 1 319 1 316 0.0 517
MS.gene044102.t1 MTR_3g103030 49.211 380 121 12 1 368 1 320 3.20e-96 289
MS.gene044102.t1 MTR_5g005110 52.821 195 78 5 179 363 120 310 5.01e-51 173
MS.gene044102.t1 MTR_1g106460 51.579 190 69 5 189 363 143 324 6.27e-49 168
MS.gene044102.t1 MTR_1g106470 51.124 178 81 3 190 365 111 284 7.61e-47 161
MS.gene044102.t1 MTR_1g106480 55.000 120 21 2 276 365 38 154 8.48e-34 123
MS.gene044102.t1 MTR_5g079500 65.000 60 21 0 286 345 227 286 2.03e-22 96.7
MS.gene044102.t1 MTR_5g005110 45.270 148 67 5 179 316 120 263 1.74e-21 93.2
MS.gene044102.t1 MTR_4g131160 52.564 78 37 0 263 340 182 259 1.26e-19 89.7
MS.gene044102.t1 MTR_4g131160 52.564 78 37 0 263 340 185 262 1.39e-19 89.7
MS.gene044102.t1 MTR_8g093500 66.071 56 19 0 286 341 123 178 1.34e-18 85.1
MS.gene044102.t1 MTR_3g101810 62.963 54 20 0 286 339 180 233 9.38e-18 82.8
MS.gene044102.t1 MTR_1g106470 41.221 131 71 3 190 318 111 237 6.06e-17 79.7
MS.gene044102.t1 MTR_7g069590 56.364 55 24 0 284 338 33 87 1.02e-16 77.0
MS.gene044102.t1 MTR_1g080890 56.923 65 28 0 276 340 192 256 1.04e-16 80.9
MS.gene044102.t1 MTR_1g106460 39.860 143 61 5 189 315 143 276 1.19e-16 79.7
MS.gene044102.t1 MTR_4g070320 40.517 116 62 3 230 340 94 207 5.42e-15 75.9
MS.gene044102.t1 MTR_4g033295 57.576 66 27 1 276 340 117 182 3.76e-14 70.9
MS.gene044102.t1 MTR_4g033295 55.224 67 29 1 276 341 117 183 4.04e-14 70.5
MS.gene044102.t1 MTR_3g116770 38.136 118 67 3 226 340 141 255 9.59e-14 72.4
MS.gene044102.t1 MTR_3g116770 38.136 118 67 3 226 340 141 255 9.63e-14 72.4
MS.gene044102.t1 MTR_5g037250 34.307 137 70 3 224 340 40 176 5.85e-13 68.2
MS.gene044102.t1 MTR_1g019240 35.354 99 59 1 261 354 64 162 8.71e-13 68.2
MS.gene044102.t1 MTR_5g048860 35.915 142 75 4 215 340 288 429 1.23e-12 69.3
MS.gene044102.t1 MTR_8g012290 52.308 65 30 1 277 340 291 355 1.71e-12 68.9
MS.gene044102.t1 MTR_8g012290 52.308 65 30 1 277 340 291 355 1.71e-12 68.9
MS.gene044102.t1 MTR_8g065740 34.247 146 81 4 201 340 233 369 1.91e-12 68.6
MS.gene044102.t1 MTR_1g084980 45.455 66 36 0 275 340 460 525 1.92e-12 68.9
MS.gene044102.t1 MTR_7g053410 53.125 64 29 1 278 340 318 381 1.98e-12 68.6
MS.gene044102.t1 MTR_7g053410 52.308 65 30 1 277 340 317 381 2.09e-12 68.6
MS.gene044102.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.43e-12 68.2
MS.gene044102.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.50e-12 68.2
MS.gene044102.t1 MTR_8g062240 49.231 65 32 1 277 340 151 215 2.60e-12 67.0
MS.gene044102.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.70e-12 68.2
MS.gene044102.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.72e-12 68.2
MS.gene044102.t1 MTR_1g052470 54.545 66 29 1 276 340 297 362 3.69e-12 67.4
MS.gene044102.t1 MTR_1g069155 39.506 81 47 1 275 355 315 393 4.64e-12 67.8
MS.gene044102.t1 MTR_3g449770 36.364 99 50 3 279 369 311 404 4.66e-12 67.4
MS.gene044102.t1 MTR_4g065870 53.030 66 30 1 276 340 354 419 8.28e-12 66.6
MS.gene044102.t1 MTR_3g498825 52.308 65 30 1 277 340 147 211 8.67e-12 65.9
MS.gene044102.t1 MTR_8g099880 49.231 65 32 1 277 340 145 209 2.02e-11 64.7
MS.gene044102.t1 MTR_7g092540 55.556 63 27 1 278 339 244 306 2.26e-11 64.7
MS.gene044102.t1 MTR_1g116790 50.000 68 33 1 276 342 264 331 2.88e-11 64.3
MS.gene044102.t1 MTR_5g017040 42.188 64 37 0 290 353 118 181 3.54e-11 64.3
MS.gene044102.t1 MTR_7g092510 41.250 80 46 1 262 340 158 237 8.47e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044102.t1 AT2G14760 86.316 95 13 0 271 365 231 325 7.11e-54 181
MS.gene044102.t1 AT1G27740 63.514 148 45 3 220 367 119 257 9.76e-54 178
MS.gene044102.t1 AT4G33880 79.612 103 21 0 258 360 247 349 4.22e-53 179
MS.gene044102.t1 AT2G14760 75.926 108 13 1 271 365 231 338 3.61e-50 171
MS.gene044102.t1 AT5G43175 56.463 147 63 1 221 367 77 222 1.47e-46 158
MS.gene044102.t1 AT1G66470 54.255 94 38 2 253 345 174 263 6.14e-25 103
MS.gene044102.t1 AT5G37800 56.667 90 34 2 257 345 184 269 7.47e-25 103
MS.gene044102.t1 AT2G24260 56.410 78 31 1 266 340 21 98 8.58e-21 90.9
MS.gene044102.t1 AT4G30980 46.465 99 47 2 244 340 99 193 1.56e-20 91.3
MS.gene044102.t1 AT4G30980 46.465 99 47 2 244 340 147 241 2.32e-20 91.7
MS.gene044102.t1 AT2G24260 56.410 78 31 1 266 340 124 201 2.81e-20 91.3
MS.gene044102.t1 AT3G21330 62.500 56 21 0 284 339 276 331 6.41e-18 84.7
MS.gene044102.t1 AT5G58010 56.923 65 28 0 276 340 98 162 1.32e-17 82.8
MS.gene044102.t1 AT5G01305 51.515 66 29 1 274 336 31 96 9.58e-17 77.8
MS.gene044102.t1 AT4G00120 46.970 66 34 1 286 351 121 185 9.93e-16 75.5
MS.gene044102.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.50e-15 75.1
MS.gene044102.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.50e-15 75.1
MS.gene044102.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.52e-15 75.1
MS.gene044102.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.52e-15 75.1
MS.gene044102.t1 AT1G18400 53.846 65 29 1 277 340 145 209 7.56e-14 70.9
MS.gene044102.t1 AT1G18400 54.688 64 28 1 278 340 146 209 1.24e-13 70.9
MS.gene044102.t1 AT2G18300 31.875 160 92 4 185 340 103 249 1.82e-13 71.2
MS.gene044102.t1 AT1G26260 36.364 132 74 3 212 340 112 236 2.02e-13 70.9
MS.gene044102.t1 AT2G18300 31.875 160 92 4 185 340 103 249 2.06e-13 70.9
MS.gene044102.t1 AT1G26260 35.294 153 85 4 195 340 142 287 2.22e-13 71.2
MS.gene044102.t1 AT1G26260 35.294 153 85 4 195 340 142 287 2.22e-13 71.2
MS.gene044102.t1 AT1G26260 35.294 153 85 4 195 340 142 287 2.22e-13 71.2
MS.gene044102.t1 AT1G26260 35.294 153 85 4 195 340 142 287 2.22e-13 71.2
MS.gene044102.t1 AT1G35460 54.545 66 29 1 276 340 180 245 2.23e-13 70.1
MS.gene044102.t1 AT1G26260 36.424 151 86 4 195 340 120 265 2.33e-13 71.2
MS.gene044102.t1 AT2G18300 31.875 160 92 4 185 340 103 249 2.88e-13 70.9
MS.gene044102.t1 AT3G07340 34.337 166 83 5 189 340 169 322 3.60e-13 70.9
MS.gene044102.t1 AT1G25330 46.341 82 43 1 277 357 104 185 4.24e-13 68.6
MS.gene044102.t1 AT4G09180 52.941 68 31 1 276 342 183 250 4.48e-13 68.9
MS.gene044102.t1 AT1G73830 40.187 107 60 2 247 352 117 220 4.83e-13 68.9
MS.gene044102.t1 AT3G07340 34.337 166 83 5 189 340 169 322 4.87e-13 70.5
MS.gene044102.t1 AT1G73830 40.187 107 60 2 247 352 117 220 5.14e-13 68.9
MS.gene044102.t1 AT2G42280 55.385 65 28 1 276 339 278 342 2.29e-12 68.2
MS.gene044102.t1 AT1G59640 49.231 65 32 1 277 340 136 200 2.44e-12 67.0
MS.gene044102.t1 AT3G23690 37.168 113 54 2 245 340 143 255 2.83e-12 67.8
MS.gene044102.t1 AT1G09530 37.864 103 58 2 253 349 307 409 3.03e-12 68.2
MS.gene044102.t1 AT1G09530 37.864 103 58 2 253 349 307 409 3.03e-12 68.2
MS.gene044102.t1 AT1G09530 37.864 103 58 2 253 349 307 409 3.03e-12 68.2
MS.gene044102.t1 AT1G09530 37.864 103 58 2 253 349 307 409 3.03e-12 68.2
MS.gene044102.t1 AT1G09530 37.864 103 58 2 253 349 307 409 3.03e-12 68.2
MS.gene044102.t1 AT1G09530 37.864 103 58 2 253 349 307 409 3.03e-12 68.2
MS.gene044102.t1 AT1G51140 52.308 65 30 1 276 339 303 367 3.96e-12 67.4
MS.gene044102.t1 AT5G48560 52.308 65 30 1 277 340 301 365 3.99e-12 67.8
MS.gene044102.t1 AT5G48560 53.125 64 29 1 278 340 302 365 4.35e-12 67.8
MS.gene044102.t1 AT4G34530 50.769 65 31 1 277 340 172 236 5.60e-12 66.6
MS.gene044102.t1 AT1G10120 51.562 64 30 1 278 340 207 270 5.75e-12 67.0
MS.gene044102.t1 AT1G10120 51.562 64 30 1 278 340 207 270 5.75e-12 67.0
MS.gene044102.t1 AT1G59640 49.231 65 32 1 277 340 136 200 7.11e-12 66.2
MS.gene044102.t1 AT4G00050 41.463 82 43 2 263 344 96 172 1.08e-11 65.5
MS.gene044102.t1 AT2G42280 54.688 64 28 1 276 338 278 341 1.39e-11 65.5
MS.gene044102.t1 AT1G68920 50.769 65 31 1 277 340 302 366 1.69e-11 65.9
MS.gene044102.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.71e-11 65.9
MS.gene044102.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.71e-11 65.9
MS.gene044102.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.71e-11 65.9
MS.gene044102.t1 AT4G00050 41.463 82 43 2 263 344 198 274 2.18e-11 65.1
MS.gene044102.t1 AT4G00050 41.463 82 43 2 263 344 198 274 2.19e-11 65.1
MS.gene044102.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.58e-11 64.7
MS.gene044102.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.58e-11 64.7
MS.gene044102.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.58e-11 64.7
MS.gene044102.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.58e-11 64.7
MS.gene044102.t1 AT4G36540 47.692 65 33 1 277 340 141 205 3.73e-11 63.9
MS.gene044102.t1 AT4G36540 47.692 65 33 1 277 340 141 205 3.89e-11 63.9
MS.gene044102.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.13e-11 64.3
MS.gene044102.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.13e-11 64.3
MS.gene044102.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.13e-11 64.3
MS.gene044102.t1 AT4G28790 39.560 91 52 2 264 354 260 347 4.20e-11 64.3
MS.gene044102.t1 AT2G46970 32.967 91 56 1 276 361 222 312 6.02e-11 63.9
MS.gene044102.t1 AT2G46970 32.967 91 56 1 276 361 191 281 6.22e-11 63.9
MS.gene044102.t1 AT2G46970 32.967 91 56 1 276 361 200 290 7.08e-11 63.5
MS.gene044102.t1 AT4G36930 39.189 74 45 0 284 357 198 271 7.14e-11 63.5

Find 49 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCATTACAATCTCATTA+AGG 0.173245 1.2:-4921225 None:intergenic
TGCAAGTGATGATCATATTT+TGG 0.179137 1.2:+4921273 MS.gene044102:CDS
GATCAAAATTCACTTCTTCT+AGG 0.197048 1.2:+4920923 MS.gene044102:CDS
GAGAAATATAGTTAGAGTTT+TGG 0.293615 1.2:-4921045 None:intergenic
TACCCTTGCATATAGACTTT+GGG 0.321694 1.2:-4921833 None:intergenic
AAGAAATCCCATTCTCCTTC+AGG 0.327986 1.2:-4920848 None:intergenic
TTCCATTACAATCTCATTAA+GGG 0.348435 1.2:-4921224 None:intergenic
TATGCACCACTTGCTTATAA+TGG 0.352026 1.2:+4922386 MS.gene044102:CDS
TGGTTATAATACTCAAATAA+TGG 0.360333 1.2:+4921303 MS.gene044102:CDS
ATTAATAATAGAGGATCAAA+TGG 0.401696 1.2:+4921694 MS.gene044102:CDS
CCTTCAGGGAAAGTACCTAT+AGG 0.408509 1.2:-4920833 None:intergenic
GGAACTACTCTCAACTCAAA+TGG 0.413988 1.2:+4921775 MS.gene044102:CDS
TTACCCTTGCATATAGACTT+TGG 0.415798 1.2:-4921834 None:intergenic
ATCAAAATTCACTTCTTCTA+GGG 0.417114 1.2:+4920924 MS.gene044102:CDS
TGCTCGGTGTGAAGATGAAC+AGG 0.422706 1.2:-4921328 None:intergenic
TACTTTCCCTGAAGGAGAAT+GGG 0.424302 1.2:+4920841 MS.gene044102:CDS
TTATTTACTAGTACTTGATC+AGG 0.442578 1.2:-4921136 None:intergenic
AGTTGCAAATGCAGCTCAAA+AGG 0.443724 1.2:+4921353 MS.gene044102:CDS
AATATTACCTTTGTTCCGTT+CGG 0.447590 1.2:-4922026 None:intergenic
ATCCCTTAATGAGATTGTAA+TGG 0.463322 1.2:+4921222 MS.gene044102:CDS
ACAGAAGAGATTAATAATAG+AGG 0.477922 1.2:+4921685 MS.gene044102:CDS
GAACTACTCTCAACTCAAAT+GGG 0.480885 1.2:+4921776 MS.gene044102:CDS
GCTTATAATGGACTTGACCT+TGG 0.488445 1.2:+4922398 MS.gene044102:CDS
AATGCTTCTCAAGAAAATAG+TGG 0.493032 1.2:+4921751 MS.gene044102:CDS
GTACTTTCCCTGAAGGAGAA+TGG 0.496433 1.2:+4920840 MS.gene044102:CDS
TTATAGAATATGGAACCTAT+AGG 0.524720 1.2:+4920818 None:intergenic
ACCCTTGCATATAGACTTTG+GGG 0.534775 1.2:-4921832 None:intergenic
ATCCCCAAAGTCTATATGCA+AGG 0.542852 1.2:+4921830 MS.gene044102:CDS
AGAAATCCCATTCTCCTTCA+GGG 0.544452 1.2:-4920847 None:intergenic
ATTTCAATTATATAGGGCCA+AGG 0.547971 1.2:+4921601 MS.gene044102:intron
CTGCATTTGCAACTCATGCT+CGG 0.548624 1.2:-4921344 None:intergenic
TGAGGTTGAGATTGAGTCCA+AGG 0.556070 1.2:-4922415 None:intergenic
GAAAGTTGCTAACAATGAAG+AGG 0.569015 1.2:+4921657 MS.gene044102:CDS
ATTACAATCTCATTAAGGGA+TGG 0.572980 1.2:-4921220 None:intergenic
GAAACTTGATGTGATAGAAG+TGG 0.575721 1.2:+4921375 MS.gene044102:CDS
TATAAGTACAATGCTTGAAG+AGG 0.587398 1.2:+4922168 MS.gene044102:CDS
TATATCTTTGAAGCTCATAG+TGG 0.590762 1.2:-4922449 None:intergenic
TCCCCAAAGTCTATATGCAA+GGG 0.597305 1.2:+4921831 MS.gene044102:CDS
TCTTGTACCGAACGGAACAA+AGG 0.602216 1.2:+4922019 MS.gene044102:CDS
CCTATAGGTACTTTCCCTGA+AGG 0.620831 1.2:+4920833 MS.gene044102:CDS
AATTTCAGCAGTGCAAAATG+TGG 0.624595 1.2:-4920978 None:intergenic
CTCTAGTAGTAACATTTCTG+AGG 0.625639 1.2:+4921723 MS.gene044102:CDS
TTACAAAATCTTGTACCGAA+CGG 0.632772 1.2:+4922011 MS.gene044102:CDS
AAGGATGCATGAAAATTGCA+AGG 0.634976 1.2:+4921620 MS.gene044102:CDS
ACTTGATGTGATAGAAGTGG+AGG 0.635683 1.2:+4921378 MS.gene044102:CDS
GGGAAGACAAGAGCTAGTAG+AGG 0.635890 1.2:+4921796 MS.gene044102:CDS
TCAAGTCCATTATAAGCAAG+TGG 0.638289 1.2:-4922392 None:intergenic
GCTTCTCAAGAAAATAGTGG+AGG 0.669375 1.2:+4921754 MS.gene044102:CDS
ATAGTGGTAGAGAACTGTTG+AGG 0.720764 1.2:-4922433 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGATACTTTTTTTATT+TGG + chr1.2:4921943-4921962 MS.gene044102:intron 10.0%
!!! TTTTGTTTTAATATTGAAAT+TGG + chr1.2:4922063-4922082 MS.gene044102:intron 10.0%
!! AAGAGAATTAATTTCATTGA+TGG + chr1.2:4922131-4922150 MS.gene044102:intron 20.0%
!! ATTAATAATAGAGGATCAAA+TGG + chr1.2:4921694-4921713 MS.gene044102:CDS 20.0%
!! TGGTTATAATACTCAAATAA+TGG + chr1.2:4921303-4921322 MS.gene044102:CDS 20.0%
!!! GTCGTTATTTCAATTATATA+GGG + chr1.2:4921595-4921614 MS.gene044102:intron 20.0%
!!! TGTTTTAATATTGAAATTGG+TGG + chr1.2:4922066-4922085 MS.gene044102:intron 20.0%
!!! TTGTTAATTTTTTCTTCAAC+AGG - chr1.2:4921406-4921425 None:intergenic 20.0%
! ACAATAGGAGACATTATATA+TGG + chr1.2:4922236-4922255 MS.gene044102:intron 25.0%
! ACAGAAGAGATTAATAATAG+AGG + chr1.2:4921685-4921704 MS.gene044102:CDS 25.0%
! ATAAAATTGATCACCATATC+CGG - chr1.2:4921557-4921576 None:intergenic 25.0%
! ATCAAAATTCACTTCTTCTA+GGG + chr1.2:4920924-4920943 MS.gene044102:CDS 25.0%
! TTATTTACTAGTACTTGATC+AGG - chr1.2:4921139-4921158 None:intergenic 25.0%
! TTCCATTACAATCTCATTAA+GGG - chr1.2:4921227-4921246 None:intergenic 25.0%
!! ATTTTGTTGCTAGTAAGATT+AGG - chr1.2:4921489-4921508 None:intergenic 25.0%
!! ATTTTTACAGACTCAAATCA+AGG + chr1.2:4922207-4922226 MS.gene044102:CDS 25.0%
!! CGTCGTTATTTCAATTATAT+AGG + chr1.2:4921594-4921613 MS.gene044102:intron 25.0%
!! GAGAAATATAGTTAGAGTTT+TGG - chr1.2:4921048-4921067 None:intergenic 25.0%
!! TATATCCAATGATTTTTGCA+TGG + chr1.2:4921171-4921190 MS.gene044102:CDS 25.0%
!!! AAAAATGATGGATTGAACAA+TGG + chr1.2:4920947-4920966 MS.gene044102:CDS 25.0%
!!! GATCATATTTTGGAGAAAAA+TGG + chr1.2:4921283-4921302 MS.gene044102:CDS 25.0%
AAATCAAGGTAAAGCACAAT+AGG + chr1.2:4922221-4922240 MS.gene044102:intron 30.0%
AATATTACCTTTGTTCCGTT+CGG - chr1.2:4922029-4922048 None:intergenic 30.0%
AATGCTTCTCAAGAAAATAG+TGG + chr1.2:4921751-4921770 MS.gene044102:CDS 30.0%
ATCCCTTAATGAGATTGTAA+TGG + chr1.2:4921222-4921241 MS.gene044102:CDS 30.0%
ATTACAATCTCATTAAGGGA+TGG - chr1.2:4921223-4921242 None:intergenic 30.0%
ATTTCAATTATATAGGGCCA+AGG + chr1.2:4921601-4921620 MS.gene044102:intron 30.0%
CTTCCATTACAATCTCATTA+AGG - chr1.2:4921228-4921247 None:intergenic 30.0%
GATCAAAATTCACTTCTTCT+AGG + chr1.2:4920923-4920942 MS.gene044102:CDS 30.0%
TATAAGTACAATGCTTGAAG+AGG + chr1.2:4922168-4922187 MS.gene044102:CDS 30.0%
TTACAAAATCTTGTACCGAA+CGG + chr1.2:4922011-4922030 MS.gene044102:CDS 30.0%
! ATTTCATTGATGGTTTATGC+AGG + chr1.2:4922141-4922160 MS.gene044102:intron 30.0%
! TGCAAGTGATGATCATATTT+TGG + chr1.2:4921273-4921292 MS.gene044102:CDS 30.0%
! TTTTCATGCGACAAATTCAT+TGG + chr1.2:4922091-4922110 MS.gene044102:intron 30.0%
AAGGATGCATGAAAATTGCA+AGG + chr1.2:4921620-4921639 MS.gene044102:CDS 35.0%
AATTTCAGCAGTGCAAAATG+TGG - chr1.2:4920981-4921000 None:intergenic 35.0%
CTAAAAAGCGGAATTAGAGA+CGG - chr1.2:4921523-4921542 None:intergenic 35.0%
CTCATCCATGCAAAAATCAT+TGG - chr1.2:4921179-4921198 None:intergenic 35.0%
CTCTAGTAGTAACATTTCTG+AGG + chr1.2:4921723-4921742 MS.gene044102:CDS 35.0%
GAAACTTGATGTGATAGAAG+TGG + chr1.2:4921375-4921394 MS.gene044102:CDS 35.0%
GAAAGTTGCTAACAATGAAG+AGG + chr1.2:4921657-4921676 MS.gene044102:CDS 35.0%
GAACTACTCTCAACTCAAAT+GGG + chr1.2:4921776-4921795 MS.gene044102:CDS 35.0%
GCATCTTCAACACTAAAAAG+CGG - chr1.2:4921535-4921554 None:intergenic 35.0%
TACCCTTGCATATAGACTTT+GGG - chr1.2:4921836-4921855 None:intergenic 35.0%
TATGCACCACTTGCTTATAA+TGG + chr1.2:4922386-4922405 MS.gene044102:CDS 35.0%
TCAAGTCCATTATAAGCAAG+TGG - chr1.2:4922395-4922414 None:intergenic 35.0%
TTACCCTTGCATATAGACTT+TGG - chr1.2:4921837-4921856 None:intergenic 35.0%
! ACATTTTGCACTGCTGAAAT+TGG + chr1.2:4920980-4920999 MS.gene044102:CDS 35.0%
! CTTCTTCTAGGGAAAAATGA+TGG + chr1.2:4920935-4920954 MS.gene044102:CDS 35.0%
! TTGCAATTTTCATGCATCCT+TGG - chr1.2:4921621-4921640 None:intergenic 35.0%
!! CTTTTTAGTGTTGAAGATGC+CGG + chr1.2:4921535-4921554 MS.gene044102:intron 35.0%
!! TTTTGAGCTCTGATGATATG+TGG + chr1.2:4922360-4922379 MS.gene044102:CDS 35.0%
!!! CTTACATCTTTTGAAATGCG+AGG - chr1.2:4921454-4921473 None:intergenic 35.0%
!!! GAAATGCGAGGTTTTTTCTT+CGG - chr1.2:4921442-4921461 None:intergenic 35.0%
AAGAAATCCCATTCTCCTTC+AGG - chr1.2:4920851-4920870 None:intergenic 40.0%
ACCCTTGCATATAGACTTTG+GGG - chr1.2:4921835-4921854 None:intergenic 40.0%
ACTTGATGTGATAGAAGTGG+AGG + chr1.2:4921378-4921397 MS.gene044102:CDS 40.0%
AGAAATCCCATTCTCCTTCA+GGG - chr1.2:4920850-4920869 None:intergenic 40.0%
AGTTGCAAATGCAGCTCAAA+AGG + chr1.2:4921353-4921372 MS.gene044102:CDS 40.0%
ATAGTGGTAGAGAACTGTTG+AGG - chr1.2:4922436-4922455 None:intergenic 40.0%
ATCCCCAAAGTCTATATGCA+AGG + chr1.2:4921830-4921849 MS.gene044102:CDS 40.0%
GCTTCTCAAGAAAATAGTGG+AGG + chr1.2:4921754-4921773 MS.gene044102:CDS 40.0%
GGAACTACTCTCAACTCAAA+TGG + chr1.2:4921775-4921794 MS.gene044102:CDS 40.0%
TACTTTCCCTGAAGGAGAAT+GGG + chr1.2:4920841-4920860 MS.gene044102:CDS 40.0%
TCCCCAAAGTCTATATGCAA+GGG + chr1.2:4921831-4921850 MS.gene044102:CDS 40.0%
!! GCTTATAATGGACTTGACCT+TGG + chr1.2:4922398-4922417 MS.gene044102:CDS 40.0%
CCTATAGGTACTTTCCCTGA+AGG + chr1.2:4920833-4920852 MS.gene044102:CDS 45.0%
CTGCATTTGCAACTCATGCT+CGG - chr1.2:4921347-4921366 None:intergenic 45.0%
GTACTTTCCCTGAAGGAGAA+TGG + chr1.2:4920840-4920859 MS.gene044102:CDS 45.0%
TCTTGTACCGAACGGAACAA+AGG + chr1.2:4922019-4922038 MS.gene044102:CDS 45.0%
TGAGGTTGAGATTGAGTCCA+AGG - chr1.2:4922418-4922437 None:intergenic 45.0%
! AGTGTTGAAGATGCCGGATA+TGG + chr1.2:4921541-4921560 MS.gene044102:intron 45.0%
!! CCTTCAGGGAAAGTACCTAT+AGG - chr1.2:4920836-4920855 None:intergenic 45.0%
!! TATCTTATATTAAAAAAAAA+AGG - chr1.2:4922279-4922298 None:intergenic 5.0%
GGGAAGACAAGAGCTAGTAG+AGG + chr1.2:4921796-4921815 MS.gene044102:CDS 50.0%
!! TGCTCGGTGTGAAGATGAAC+AGG - chr1.2:4921331-4921350 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 4920827 4922457 4920827 ID=MS.gene044102
chr1.2 mRNA 4920827 4922457 4920827 ID=MS.gene044102.t1;Parent=MS.gene044102
chr1.2 exon 4920827 4921468 4920827 ID=MS.gene044102.t1.exon1;Parent=MS.gene044102.t1
chr1.2 CDS 4920827 4921468 4920827 ID=cds.MS.gene044102.t1;Parent=MS.gene044102.t1
chr1.2 exon 4921616 4921852 4921616 ID=MS.gene044102.t1.exon2;Parent=MS.gene044102.t1
chr1.2 CDS 4921616 4921852 4921616 ID=cds.MS.gene044102.t1;Parent=MS.gene044102.t1
chr1.2 exon 4921975 4922040 4921975 ID=MS.gene044102.t1.exon3;Parent=MS.gene044102.t1
chr1.2 CDS 4921975 4922040 4921975 ID=cds.MS.gene044102.t1;Parent=MS.gene044102.t1
chr1.2 exon 4922163 4922228 4922163 ID=MS.gene044102.t1.exon4;Parent=MS.gene044102.t1
chr1.2 CDS 4922163 4922228 4922163 ID=cds.MS.gene044102.t1;Parent=MS.gene044102.t1
chr1.2 exon 4922359 4922457 4922359 ID=MS.gene044102.t1.exon5;Parent=MS.gene044102.t1
chr1.2 CDS 4922359 4922457 4922359 ID=cds.MS.gene044102.t1;Parent=MS.gene044102.t1
Gene Sequence

>MS.gene044102

ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGAAAAATGATGGATTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCAAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAACCTGTTCATCTTCACACCGAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCTGTTGAAGAAAAAATTAACAACAAATCAGAGAATCCGAAGAAAAAACCTCGCATTTCAAAAGATGTAAGTTTTATTTTGTACCTAATCTTACTAGCAACAAAATTAACGTGAAATCCGTCTCTAATTCCGCTTTTTAGTGTTGAAGATGCCGGATATGGTGATCAATTTTATTTTTTGTCTCTAATTTTCGTCGTTATTTCAATTATATAGGGCCAAGGATGCATGAAAATTGCAAGGTCAAAGAAGAATAAGAAAGTTGCTAACAATGAAGAGGAGATTACAGAAGAGATTAATAATAGAGGATCAAATGGAAATAGCTCTAGTAGTAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGGTAACTAATCAATTACTTCAACTCAAACAAAAAAACTAGCTTGATTTATTTATATATTTTCATATCAAAACAAAAATTAGTTTATGCATATTTATGATACTTTTTTTATTTGGATTTTGCAGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCGAACGGAACAAAGGTAATATTAATTGTTGATGTATTTTTGTTTTAATATTGAAATTGGTGGCATTTTCATGCGACAAATTCATTGGTGTGTAATTAATTGTACAAGAGAATTAATTTCATTGATGGTTTATGCAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGGTAAAGCACAATAGGAGACATTATATATGGATGAATAAAATTTAAATCCTTTTTTTTTTAATATAAGATATATTCATAAAAGACAAGTACTAATTAATAATCATTGTTTTATTGTCTTTTTTTAATGTAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA
Protein sequence

>MS.gene044102.t1

MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGKNDGLNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNINNCISNDFCMDENLFASSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMEPVHLHTEHELQMQLKRKLDVIEVEVPVEEKINNKSENPKKKPRISKDGQGCMKIARSKKNKKVANNEEEITEEINNRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL