AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044128

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044128.t1 MTR_4g086580 82.738 168 14 2 117 269 2 169 2.77e-91 274
MS.gene044128.t1 MTR_3g096590 80.247 162 8 2 123 270 215 366 2.02e-82 256
MS.gene044128.t1 MTR_1g019990 62.832 113 42 0 156 268 61 173 8.61e-47 159
MS.gene044128.t1 MTR_5g017700 43.976 166 77 3 118 268 4 168 2.51e-38 137
MS.gene044128.t1 MTR_3g105320 98.039 51 1 0 69 119 156 206 2.65e-26 106
MS.gene044128.t1 MTR_1g015020 94.118 51 3 0 69 119 156 206 4.62e-25 102
MS.gene044128.t1 MTR_2g041960 79.630 54 11 0 69 122 153 206 2.12e-22 96.7
MS.gene044128.t1 MTR_4g125260 77.778 54 12 0 69 122 159 212 9.57e-22 94.7
MS.gene044128.t1 MTR_8g020920 68.966 58 18 0 69 126 153 210 2.47e-18 84.7
MS.gene044128.t1 MTR_5g038450 83.333 48 7 1 69 116 213 259 3.28e-17 81.3
MS.gene044128.t1 MTR_8g469230 83.333 48 7 1 69 116 209 255 3.58e-17 81.3
MS.gene044128.t1 MTR_6g011330 79.592 49 9 1 69 117 210 257 7.43e-17 80.1
MS.gene044128.t1 MTR_5g026370 72.549 51 13 1 69 119 166 215 7.97e-17 80.1
MS.gene044128.t1 MTR_7g009320 79.167 48 9 1 69 116 200 246 3.77e-16 78.2
MS.gene044128.t1 MTR_8g088410 70.588 51 15 0 69 119 147 197 4.47e-16 77.4
MS.gene044128.t1 MTR_4g115120 78.723 47 9 1 69 115 188 233 5.26e-16 77.8
MS.gene044128.t1 MTR_6g011570 72.917 48 13 0 69 116 144 191 1.16e-15 76.6
MS.gene044128.t1 MTR_7g074610 68.627 51 16 0 69 119 165 215 1.47e-15 76.3
MS.gene044128.t1 MTR_3g462840 72.917 48 13 0 69 116 141 188 1.69e-15 76.3
MS.gene044128.t1 MTR_8g100155 66.667 54 18 0 69 122 145 198 3.42e-15 75.1
MS.gene044128.t1 MTR_5g038870 67.347 49 16 0 69 117 153 201 1.33e-14 73.6
MS.gene044128.t1 MTR_2g096970 69.231 52 14 1 69 118 138 189 2.00e-14 72.8
MS.gene044128.t1 MTR_7g061660 69.231 52 14 1 69 118 150 201 4.00e-14 72.0
MS.gene044128.t1 MTR_2g096950 71.429 49 12 1 69 115 151 199 1.58e-13 70.1
MS.gene044128.t1 MTR_5g023980 56.897 58 23 1 67 122 166 223 3.70e-13 68.2
MS.gene044128.t1 MTR_4g076200 90.909 33 3 0 34 66 5 37 4.85e-13 65.1
MS.gene044128.t1 MTR_4g076200 90.909 33 3 0 34 66 46 78 6.27e-13 65.9
MS.gene044128.t1 MTR_5g023980 56.897 58 23 1 67 122 152 209 8.69e-13 67.8
MS.gene044128.t1 MTR_8g073560 56.897 58 22 2 67 121 167 224 9.61e-13 67.4
MS.gene044128.t1 MTR_3g067775 44.231 104 50 5 71 171 140 238 1.04e-12 67.0
MS.gene044128.t1 MTR_5g088400 58.000 50 21 0 69 118 147 196 1.19e-12 67.0
MS.gene044128.t1 MTR_5g099130 66.000 50 15 1 72 119 169 218 1.26e-12 67.4
MS.gene044128.t1 MTR_5g099130 66.000 50 15 1 72 119 176 225 1.27e-12 67.4
MS.gene044128.t1 MTR_5g099130 66.000 50 15 1 72 119 180 229 1.31e-12 67.4
MS.gene044128.t1 MTR_4g099130 57.407 54 23 0 70 123 147 200 1.46e-12 67.4
MS.gene044128.t1 MTR_8g073560 56.897 58 22 2 67 121 153 210 1.81e-12 67.0
MS.gene044128.t1 MTR_4g108270 52.727 55 25 1 69 122 162 216 2.30e-12 66.6
MS.gene044128.t1 MTR_3g040800 47.143 70 31 1 69 138 185 248 2.31e-12 66.6
MS.gene044128.t1 MTR_5g079840 65.306 49 15 1 69 115 152 200 2.48e-12 66.6
MS.gene044128.t1 MTR_4g063935 65.385 52 16 1 69 118 190 241 2.82e-12 66.6
MS.gene044128.t1 MTR_4g063935 65.385 52 16 1 69 118 170 221 3.06e-12 66.6
MS.gene044128.t1 MTR_5g088400 58.000 50 21 0 69 118 147 196 3.62e-12 66.2
MS.gene044128.t1 MTR_4g063930 58.929 56 21 1 69 122 251 306 4.93e-12 65.9
MS.gene044128.t1 MTR_5g009020 79.487 39 7 1 34 72 46 83 1.29e-11 62.4
MS.gene044128.t1 MTR_4g131900 60.345 58 21 1 64 119 164 221 1.37e-11 64.3
MS.gene044128.t1 MTR_5g013610 53.704 54 25 0 70 123 141 194 1.47e-11 64.3
MS.gene044128.t1 MTR_8g073700 50.847 59 26 1 67 122 41 99 1.50e-11 63.5
MS.gene044128.t1 MTR_2g095880 58.621 58 22 1 64 119 154 211 1.89e-11 63.9
MS.gene044128.t1 MTR_8g008820 61.702 47 18 0 70 116 154 200 2.21e-11 63.9
MS.gene044128.t1 MTR_5g092120 58.929 56 21 1 66 119 136 191 2.64e-11 63.5
MS.gene044128.t1 MTR_2g095880 60.000 55 20 1 64 116 154 208 3.04e-11 63.5
MS.gene044128.t1 MTR_4g063940 61.538 52 18 1 69 118 172 223 3.54e-11 63.2
MS.gene044128.t1 MTR_4g063945 57.143 56 22 1 69 122 169 224 3.65e-11 63.2
MS.gene044128.t1 MTR_4g063945 57.143 56 22 1 69 122 167 222 3.77e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044128.t1 AT4G34420 59.355 155 49 1 128 268 14 168 5.24e-60 194
MS.gene044128.t1 AT2G15730 61.589 151 44 1 133 269 19 169 8.06e-60 192
MS.gene044128.t1 AT2G15730 61.589 151 44 1 133 269 19 169 2.12e-59 192
MS.gene044128.t1 AT2G15730 73.043 115 31 0 155 269 22 136 1.12e-58 189
MS.gene044128.t1 AT3G50620 48.101 158 68 3 124 269 12 167 1.96e-42 148
MS.gene044128.t1 AT3G50620 65.957 94 32 0 176 269 46 139 1.49e-39 140
MS.gene044128.t1 AT3G50620 65.957 94 32 0 176 269 46 139 1.49e-39 140
MS.gene044128.t1 AT2G05940 82.000 50 9 0 69 118 161 210 5.76e-20 89.4
MS.gene044128.t1 AT2G26290 75.000 56 14 0 64 119 157 212 1.12e-19 88.2
MS.gene044128.t1 AT3G28690 81.250 48 8 1 69 116 152 198 4.16e-17 80.9
MS.gene044128.t1 AT3G28690 81.250 48 8 1 69 116 103 149 4.33e-17 80.5
MS.gene044128.t1 AT3G28690 81.250 48 8 1 69 116 203 249 4.77e-17 80.9
MS.gene044128.t1 AT5G15080 81.250 48 8 1 69 116 219 265 6.60e-17 80.5
MS.gene044128.t1 AT3G01300 81.250 48 8 1 69 116 213 259 7.63e-17 80.1
MS.gene044128.t1 AT1G26970 70.833 48 14 0 71 118 48 95 1.39e-16 78.2
MS.gene044128.t1 AT1G61590 70.833 48 14 0 69 116 173 220 1.65e-16 79.0
MS.gene044128.t1 AT1G69790 69.388 49 15 0 69 117 150 198 1.74e-16 79.0
MS.gene044128.t1 AT1G69790 69.388 49 15 0 69 117 161 209 2.03e-16 78.6
MS.gene044128.t1 AT1G26970 72.340 47 13 0 71 117 163 209 2.49e-16 78.6
MS.gene044128.t1 AT5G01020 70.588 51 15 0 69 119 143 193 5.88e-16 77.4
MS.gene044128.t1 AT5G35580 67.925 53 17 0 70 122 151 203 6.20e-16 77.8
MS.gene044128.t1 AT5G35580 67.925 53 17 0 70 122 163 215 6.55e-16 77.4
MS.gene044128.t1 AT1G72540 64.706 51 18 0 69 119 158 208 1.27e-15 76.6
MS.gene044128.t1 AT1G14370 67.308 52 17 0 66 117 160 211 1.56e-15 76.3
MS.gene044128.t1 AT2G07180 66.667 54 18 0 69 122 164 217 1.92e-15 75.9
MS.gene044128.t1 AT2G07180 66.667 54 18 0 69 122 164 217 1.92e-15 75.9
MS.gene044128.t1 AT5G56460 70.000 50 15 0 70 119 154 203 3.13e-15 75.5
MS.gene044128.t1 AT2G02800 67.347 49 16 0 69 117 160 208 5.06e-15 74.7
MS.gene044128.t1 AT2G02800 67.347 49 16 0 69 117 160 208 5.06e-15 74.7
MS.gene044128.t1 AT1G74490 66.000 50 17 0 69 118 162 211 9.19e-15 73.9
MS.gene044128.t1 AT2G28930 69.231 52 14 1 69 118 157 208 1.24e-14 73.6
MS.gene044128.t1 AT2G28930 69.231 52 14 1 69 118 149 200 1.25e-14 73.6
MS.gene044128.t1 AT2G28930 69.231 52 14 1 69 118 146 197 1.26e-14 73.6
MS.gene044128.t1 AT1G07570 67.308 52 15 1 69 118 29 80 1.56e-14 72.4
MS.gene044128.t1 AT2G17220 62.500 56 19 1 69 122 162 217 3.35e-14 72.4
MS.gene044128.t1 AT2G17220 62.500 56 19 1 69 122 161 216 3.43e-14 72.4
MS.gene044128.t1 AT1G07570 67.308 52 15 1 69 118 145 196 3.57e-14 72.0
MS.gene044128.t1 AT1G07570 67.308 52 15 1 69 118 145 196 3.57e-14 72.0
MS.gene044128.t1 AT1G07570 67.308 52 15 1 69 118 145 196 3.57e-14 72.0
MS.gene044128.t1 AT1G07570 67.308 52 15 1 69 118 156 207 3.82e-14 72.0
MS.gene044128.t1 AT5G02290 66.667 51 15 1 69 117 145 195 8.90e-14 70.9
MS.gene044128.t1 AT5G02290 66.667 51 15 1 69 117 145 195 8.90e-14 70.9
MS.gene044128.t1 AT1G76360 41.000 100 56 2 70 168 241 338 8.54e-13 68.2
MS.gene044128.t1 AT2G39660 67.347 49 14 1 69 115 144 192 1.93e-12 67.0
MS.gene044128.t1 AT5G47070 61.702 47 18 0 70 116 165 211 8.26e-12 65.1
MS.gene044128.t1 AT3G20530 55.556 54 21 1 66 116 147 200 2.59e-11 63.2
MS.gene044128.t1 AT3G20060 76.923 39 8 1 34 72 5 42 4.05e-11 60.1
MS.gene044128.t1 AT3G20530 55.556 54 21 1 66 116 147 200 4.61e-11 62.8
MS.gene044128.t1 AT3G26940 61.538 52 18 1 66 115 138 189 5.25e-11 62.8
MS.gene044128.t1 AT3G20060 76.923 39 8 1 34 72 50 87 7.50e-11 60.1

Find 52 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCACTGGTAGCATAAT+TGG 0.267686 3.4:+75800200 MS.gene044128:CDS
ATGTTGTAGTTAATGGTTAC+AGG 0.320663 3.4:+75800110 MS.gene044128:intron
TCTCTTCCTTTGCACTCATC+TGG 0.326355 3.4:-75798681 None:intergenic
TTCTGTCGATGCAGAGATTT+GGG 0.328260 3.4:+75800454 MS.gene044128:CDS
CATCCTAACATAAGCTCAAA+TGG 0.343020 3.4:+75800507 MS.gene044128:CDS
ATTCTGTCGATGCAGAGATT+TGG 0.344902 3.4:+75800453 MS.gene044128:CDS
AGGTTGATCGTGTTGGCTTT+TGG 0.349435 3.4:+75800176 MS.gene044128:CDS
TGAGGAGGAGCAAAGGCTTT+TGG 0.354771 3.4:+75799770 MS.gene044128:intron
TGTCAGATGAGTGGTGATTC+TGG 0.373206 3.4:+75799370 MS.gene044128:intron
TGATTTGGATAATGCACATA+AGG 0.378317 3.4:-75800287 None:intergenic
TCAATGTTAGGTCCAGAAAA+AGG 0.389623 3.4:-75800251 None:intergenic
TCCCCATTTGAGCTTATGTT+AGG 0.397433 3.4:-75800510 None:intergenic
TGAAGAATTCTACGTTGGTT+TGG 0.415815 3.4:+75800153 MS.gene044128:CDS
TGGACCTAACATTGAACCTT+GGG 0.419784 3.4:+75800259 MS.gene044128:CDS
ACTAGAATGAAAATTGCATT+AGG 0.423344 3.4:+75799969 MS.gene044128:CDS
ATCTCCCAAGGTTCAATGTT+AGG 0.434751 3.4:-75800263 None:intergenic
ATCCTAACATAAGCTCAAAT+GGG 0.440789 3.4:+75800508 MS.gene044128:CDS
GTGCACGGCTGCTGTTGGCT+TGG 0.453357 3.4:+75800635 MS.gene044128:CDS
AACGACAATAACAGAGACTT+TGG 0.453474 3.4:+75800566 MS.gene044128:CDS
TTGTGGAAAAGAACAATAAC+CGG 0.454826 3.4:+75799427 MS.gene044128:CDS
AAACACTGTATCTTTGCTTC+CGG 0.457800 3.4:-75799446 None:intergenic
AAGAATATGTTGTCTTCCTC+AGG 0.473205 3.4:-75799406 None:intergenic
AATTGCATTAGGTGCAGCTA+AGG 0.490148 3.4:+75799980 MS.gene044128:CDS
CAAGTTTATCTGCTTCATGA+AGG 0.492384 3.4:-75800013 None:intergenic
AGAATTCTACGTTGGTTTGG+AGG 0.494354 3.4:+75800156 MS.gene044128:CDS
CTGGACCTAACATTGAACCT+TGG 0.498513 3.4:+75800258 MS.gene044128:CDS
GTGCAAAGGAAGAGATTGTT+GGG 0.500442 3.4:+75798689 MS.gene044128:CDS
GTACATGGCAAGAGGGAGCT+TGG 0.505784 3.4:+75799800 MS.gene044128:CDS
AGTGCAAAGGAAGAGATTGT+TGG 0.513265 3.4:+75798688 MS.gene044128:CDS
TTCCTTTGCACTCATCTGGA+TGG 0.513836 3.4:-75798677 None:intergenic
ACACAATTTATAATCTAGAC+TGG 0.515373 3.4:+75800589 MS.gene044128:CDS
TGCAGAGATTTGGGAGTGGA+TGG 0.517207 3.4:+75800463 MS.gene044128:CDS
GAATAGTAAAATACCGCAGC+GGG 0.532598 3.4:-75800434 None:intergenic
CAAATCACAAAACTTATAGC+AGG 0.544882 3.4:+75800303 MS.gene044128:CDS
TGTTTGTTAGGGAGGAATGC+AGG 0.553300 3.4:+75800406 MS.gene044128:intron
GGTTTGGAGGTTGATCGTGT+TGG 0.562871 3.4:+75800169 MS.gene044128:CDS
AATGAGTGCACGGCTGCTGT+TGG 0.580279 3.4:+75800630 MS.gene044128:CDS
AGGAAGACAACATATTCTTG+TGG 0.600574 3.4:+75799410 MS.gene044128:CDS
ACTGTTGTGAGGAGGAGCAA+AGG 0.611271 3.4:+75799763 MS.gene044128:intron
GTGTATGAGTACATGGCAAG+AGG 0.614581 3.4:+75799792 MS.gene044128:CDS
AATGCAGGTGCCACCCGCTG+CGG 0.621498 3.4:+75800421 MS.gene044128:CDS
GGGTTTGAAGAATTCTACGT+TGG 0.626124 3.4:+75800148 MS.gene044128:CDS
TCCTAACATAAGCTCAAATG+GGG 0.629400 3.4:+75800509 MS.gene044128:CDS
TAGTAAAATACCGCAGCGGG+TGG 0.630606 3.4:-75800431 None:intergenic
TGTATGAGTACATGGCAAGA+GGG 0.637100 3.4:+75799793 MS.gene044128:CDS
TGCACATAAGGAATCTCCCA+AGG 0.639238 3.4:-75800275 None:intergenic
TACCATCCAGATGAGTGCAA+AGG 0.651843 3.4:+75798675 MS.gene044128:CDS
ATTGCATTAGGTGCAGCTAA+GGG 0.656681 3.4:+75799981 MS.gene044128:CDS
TGATTGGACTGTCAGATGAG+TGG 0.670291 3.4:+75799361 MS.gene044128:intron
TCGATGCAGAGATTTGGGAG+TGG 0.682682 3.4:+75800459 MS.gene044128:CDS
GATACTCTGCTACATTACCA+TGG 0.696698 3.4:+75799943 MS.gene044128:CDS
AGAATAGTAAAATACCGCAG+CGG 0.733285 3.4:-75800435 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTAATCCATTATAT+TGG - chr3.4:75799064-75799083 None:intergenic 10.0%
!! AAATATTAATCCATTATATT+GGG - chr3.4:75799063-75799082 None:intergenic 10.0%
!!! ATTAATATTTTAGTGAATAA+GGG + chr3.4:75799073-75799092 MS.gene044128:intron 10.0%
!! AATACAAAACATTAATATCT+AGG - chr3.4:75799337-75799356 None:intergenic 15.0%
!! AGATAAACTTGTAATATATA+GGG + chr3.4:75800025-75800044 MS.gene044128:intron 15.0%
!! ATATGTATATAATATAGTAC+TGG - chr3.4:75799869-75799888 None:intergenic 15.0%
!!! GATTAATATTTTAGTGAATA+AGG + chr3.4:75799072-75799091 MS.gene044128:intron 15.0%
!!! TTTTTAGATCCTTAAATATA+TGG + chr3.4:75798831-75798850 MS.gene044128:intron 15.0%
!! AATAGTGTATTTCAAATCAA+TGG - chr3.4:75798937-75798956 None:intergenic 20.0%
!! AATCAATGTCCATATATTTA+AGG - chr3.4:75798843-75798862 None:intergenic 20.0%
!! ACATGAAAAAAATGAAACAT+TGG - chr3.4:75799165-75799184 None:intergenic 20.0%
!! CAGATAAACTTGTAATATAT+AGG + chr3.4:75800024-75800043 MS.gene044128:intron 20.0%
!! CATATATTAATCATGTTGTA+AGG + chr3.4:75799884-75799903 MS.gene044128:intron 20.0%
!! TAACTATGCAATGAAAATTA+AGG - chr3.4:75798777-75798796 None:intergenic 20.0%
!! TTCAATAATGTTGTAGTTAA+TGG + chr3.4:75800103-75800122 MS.gene044128:intron 20.0%
!!! AGATTTGAATTTTTAGTAAG+TGG + chr3.4:75799028-75799047 MS.gene044128:intron 20.0%
!!! ATGTTTTGTATTTTTGTGAT+TGG + chr3.4:75799345-75799364 MS.gene044128:intron 20.0%
!!! ATTGTTTCTTTATTTTGTTG+AGG + chr3.4:75799231-75799250 MS.gene044128:intron 20.0%
!!! GGATAATTTAGTGAAATTTT+AGG - chr3.4:75798756-75798775 None:intergenic 20.0%
!!! TATATTTTTGCTTCTTTAAG+AGG - chr3.4:75799488-75799507 None:intergenic 20.0%
! AAATTGAAAAACACAAACAC+GGG - chr3.4:75799561-75799580 None:intergenic 25.0%
! ACACAATTTATAATCTAGAC+TGG + chr3.4:75800589-75800608 MS.gene044128:CDS 25.0%
! ACTAGAATGAAAATTGCATT+AGG + chr3.4:75799969-75799988 MS.gene044128:CDS 25.0%
! CTATTAGTTAAACACATGTT+TGG - chr3.4:75799297-75799316 None:intergenic 25.0%
! CTTACAGAGAAATAAACAAA+TGG - chr3.4:75799193-75799212 None:intergenic 25.0%
! GAAATTGAAAAACACAAACA+CGG - chr3.4:75799562-75799581 None:intergenic 25.0%
! GCAAAAATATATATCCATGA+AGG + chr3.4:75799497-75799516 MS.gene044128:intron 25.0%
!! ATATGGACATTGATTGATAT+TGG + chr3.4:75798848-75798867 MS.gene044128:intron 25.0%
!! ATTGGAGATTTAAGATCAAT+CGG + chr3.4:75798866-75798885 MS.gene044128:intron 25.0%
!! TTCATAGTATCTGAACTTTT+AGG + chr3.4:75799686-75799705 MS.gene044128:intron 25.0%
ATCCTAACATAAGCTCAAAT+GGG + chr3.4:75800508-75800527 MS.gene044128:CDS 30.0%
ATGTTGTAGTTAATGGTTAC+AGG + chr3.4:75800110-75800129 MS.gene044128:intron 30.0%
CAAATCACAAAACTTATAGC+AGG + chr3.4:75800303-75800322 MS.gene044128:CDS 30.0%
CATGTGTTTAACTAATAGTG+TGG + chr3.4:75799299-75799318 MS.gene044128:intron 30.0%
GTATTTCAAATCAATGGTGA+AGG - chr3.4:75798931-75798950 None:intergenic 30.0%
TTGTGGAAAAGAACAATAAC+CGG + chr3.4:75799427-75799446 MS.gene044128:CDS 30.0%
TTTCCAGTAGCAATATATGA+TGG + chr3.4:75799578-75799597 MS.gene044128:intron 30.0%
! AGTTTTTGCCAAAATTACAG+TGG + chr3.4:75799259-75799278 MS.gene044128:intron 30.0%
! GAACTATGATATAAAAGTGC+AGG + chr3.4:75799133-75799152 MS.gene044128:intron 30.0%
! GTTATTCAAATGCCTTTTTC+TGG + chr3.4:75800239-75800258 MS.gene044128:CDS 30.0%
! TATGATTTTCTCAGCTGATT+TGG + chr3.4:75799659-75799678 MS.gene044128:intron 30.0%
! TGATTTGGATAATGCACATA+AGG - chr3.4:75800290-75800309 None:intergenic 30.0%
! TTTGAAGTTTGTAGGATTGA+TGG + chr3.4:75799097-75799116 MS.gene044128:intron 30.0%
!! ATTTTCATTCTAGTTGACCA+TGG - chr3.4:75799963-75799982 None:intergenic 30.0%
!! CTGCTATAAGTTTTGTGATT+TGG - chr3.4:75800305-75800324 None:intergenic 30.0%
!!! ATAAGGGTTTTGAAGTTTGT+AGG + chr3.4:75799089-75799108 MS.gene044128:intron 30.0%
AAACACTGTATCTTTGCTTC+CGG - chr3.4:75799449-75799468 None:intergenic 35.0%
AACGACAATAACAGAGACTT+TGG + chr3.4:75800566-75800585 MS.gene044128:CDS 35.0%
AAGAATATGTTGTCTTCCTC+AGG - chr3.4:75799409-75799428 None:intergenic 35.0%
AGAATAGTAAAATACCGCAG+CGG - chr3.4:75800438-75800457 None:intergenic 35.0%
AGGAAGACAACATATTCTTG+TGG + chr3.4:75799410-75799429 MS.gene044128:CDS 35.0%
ATTGAAACACTTGACCTTCA+TGG - chr3.4:75799514-75799533 None:intergenic 35.0%
CAAGTTTATCTGCTTCATGA+AGG - chr3.4:75800016-75800035 None:intergenic 35.0%
CATCCTAACATAAGCTCAAA+TGG + chr3.4:75800507-75800526 MS.gene044128:CDS 35.0%
GATCCATCATATATTGCTAC+TGG - chr3.4:75799584-75799603 None:intergenic 35.0%
GTTCTTCATTGTTGCCTAAT+TGG + chr3.4:75799738-75799757 MS.gene044128:intron 35.0%
TCAATGTTAGGTCCAGAAAA+AGG - chr3.4:75800254-75800273 None:intergenic 35.0%
TCCTAACATAAGCTCAAATG+GGG + chr3.4:75800509-75800528 MS.gene044128:CDS 35.0%
TGCATCGTTGTTTGTTTGTT+AGG + chr3.4:75800394-75800413 MS.gene044128:intron 35.0%
! CTCAAATGGGGAAATCTTTT+CGG + chr3.4:75800521-75800540 MS.gene044128:CDS 35.0%
! GACTAAAGTGCCCAATATAA+TGG + chr3.4:75799050-75799069 MS.gene044128:intron 35.0%
! GCAGTTTTACTTGATCAATG+AGG + chr3.4:75798713-75798732 MS.gene044128:CDS 35.0%
! GCATCGTTGTTTGTTTGTTA+GGG + chr3.4:75800395-75800414 MS.gene044128:intron 35.0%
! TCTTTTCGGTTAAGGTTAGA+AGG + chr3.4:75800535-75800554 MS.gene044128:CDS 35.0%
! TGAAGAATTCTACGTTGGTT+TGG + chr3.4:75800153-75800172 MS.gene044128:CDS 35.0%
! TGCTTCTAAAAATGAGTGCA+CGG + chr3.4:75800620-75800639 MS.gene044128:CDS 35.0%
! TTCTTTGTTGTGATTCAAGC+AGG + chr3.4:75799921-75799940 MS.gene044128:intron 35.0%
!! ACAATGTGCCACTGTAATTT+TGG - chr3.4:75799270-75799289 None:intergenic 35.0%
!! ATAAGCACTGGTAGCATAAT+TGG + chr3.4:75800200-75800219 MS.gene044128:CDS 35.0%
!!! CTTTTAGGATTGCTTCAATG+AGG + chr3.4:75799701-75799720 MS.gene044128:intron 35.0%
AATTGCATTAGGTGCAGCTA+AGG + chr3.4:75799980-75799999 MS.gene044128:CDS 40.0%
AATTGGATACTGTTGTGAGG+AGG + chr3.4:75799755-75799774 MS.gene044128:intron 40.0%
AGTGCAAAGGAAGAGATTGT+TGG + chr3.4:75798688-75798707 MS.gene044128:CDS 40.0%
ATCTCCCAAGGTTCAATGTT+AGG - chr3.4:75800266-75800285 None:intergenic 40.0%
ATTCTGTCGATGCAGAGATT+TGG + chr3.4:75800453-75800472 MS.gene044128:CDS 40.0%
ATTGCATTAGGTGCAGCTAA+GGG + chr3.4:75799981-75800000 MS.gene044128:CDS 40.0%
CCTAATTGGATACTGTTGTG+AGG + chr3.4:75799752-75799771 MS.gene044128:intron 40.0%
CCTCACAACAGTATCCAATT+AGG - chr3.4:75799755-75799774 None:intergenic 40.0%
GAACAAAACATGACTGTGAG+TGG - chr3.4:75798964-75798983 None:intergenic 40.0%
GAATAGTAAAATACCGCAGC+GGG - chr3.4:75800437-75800456 None:intergenic 40.0%
GATACTCTGCTACATTACCA+TGG + chr3.4:75799943-75799962 MS.gene044128:CDS 40.0%
GGGTTTGAAGAATTCTACGT+TGG + chr3.4:75800148-75800167 MS.gene044128:CDS 40.0%
GTGCAAAGGAAGAGATTGTT+GGG + chr3.4:75798689-75798708 MS.gene044128:CDS 40.0%
TCCCCATTTGAGCTTATGTT+AGG - chr3.4:75800513-75800532 None:intergenic 40.0%
TGGACCTAACATTGAACCTT+GGG + chr3.4:75800259-75800278 MS.gene044128:CDS 40.0%
TGTATGAGTACATGGCAAGA+GGG + chr3.4:75799793-75799812 MS.gene044128:CDS 40.0%
TTCTGTCGATGCAGAGATTT+GGG + chr3.4:75800454-75800473 MS.gene044128:CDS 40.0%
! ACAGGTGTTTTGCTTGTGAA+GGG + chr3.4:75800128-75800147 MS.gene044128:CDS 40.0%
! GATTGATGGTTCAGTGAGAT+TGG + chr3.4:75799111-75799130 MS.gene044128:intron 40.0%
! TACAGGTGTTTTGCTTGTGA+AGG + chr3.4:75800127-75800146 MS.gene044128:CDS 40.0%
! TCGTTGTTTGTTTGTTAGGG+AGG + chr3.4:75800398-75800417 MS.gene044128:intron 40.0%
! TGGGGAAATCTTTTCGGTTA+AGG + chr3.4:75800527-75800546 MS.gene044128:CDS 40.0%
!! AGAATTCTACGTTGGTTTGG+AGG + chr3.4:75800156-75800175 MS.gene044128:CDS 40.0%
!! GCTTTTGGTGTATGAGTACA+TGG + chr3.4:75799785-75799804 MS.gene044128:CDS 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG + chr3.4:75799390-75799409 MS.gene044128:CDS 40.0%
!!! TTGGCTTTTGGAATAAGCAC+TGG + chr3.4:75800188-75800207 MS.gene044128:CDS 40.0%
CTGGACCTAACATTGAACCT+TGG + chr3.4:75800258-75800277 MS.gene044128:CDS 45.0%
GTGTATGAGTACATGGCAAG+AGG + chr3.4:75799792-75799811 MS.gene044128:CDS 45.0%
TACCATCCAGATGAGTGCAA+AGG + chr3.4:75798675-75798694 MS.gene044128:CDS 45.0%
TCTCTTCCTTTGCACTCATC+TGG - chr3.4:75798684-75798703 None:intergenic 45.0%
TGATTGGACTGTCAGATGAG+TGG + chr3.4:75799361-75799380 MS.gene044128:intron 45.0%
TGCACATAAGGAATCTCCCA+AGG - chr3.4:75800278-75800297 None:intergenic 45.0%
TGTCAGATGAGTGGTGATTC+TGG + chr3.4:75799370-75799389 MS.gene044128:intron 45.0%
TTCCTTTGCACTCATCTGGA+TGG - chr3.4:75798680-75798699 None:intergenic 45.0%
! TGTTTGTTAGGGAGGAATGC+AGG + chr3.4:75800406-75800425 MS.gene044128:intron 45.0%
!!! AGGTTGATCGTGTTGGCTTT+TGG + chr3.4:75800176-75800195 MS.gene044128:CDS 45.0%
!! ATTTAATTGTTATAATTAAT+TGG + chr3.4:75798797-75798816 MS.gene044128:intron 5.0%
!! TTTAATTGTTATAATTAATT+GGG + chr3.4:75798798-75798817 MS.gene044128:intron 5.0%
ACTGTTGTGAGGAGGAGCAA+AGG + chr3.4:75799763-75799782 MS.gene044128:intron 50.0%
TAGTAAAATACCGCAGCGGG+TGG - chr3.4:75800434-75800453 None:intergenic 50.0%
TCGATGCAGAGATTTGGGAG+TGG + chr3.4:75800459-75800478 MS.gene044128:CDS 50.0%
TGCAGAGATTTGGGAGTGGA+TGG + chr3.4:75800463-75800482 MS.gene044128:CDS 50.0%
! GGTTTGGAGGTTGATCGTGT+TGG + chr3.4:75800169-75800188 MS.gene044128:CDS 50.0%
! TGAGGAGGAGCAAAGGCTTT+TGG + chr3.4:75799770-75799789 MS.gene044128:intron 50.0%
AATGAGTGCACGGCTGCTGT+TGG + chr3.4:75800630-75800649 MS.gene044128:CDS 55.0%
GTACATGGCAAGAGGGAGCT+TGG + chr3.4:75799800-75799819 MS.gene044128:CDS 55.0%
! AATGCAGGTGCCACCCGCTG+CGG + chr3.4:75800421-75800440 MS.gene044128:CDS 65.0%
! GTGCACGGCTGCTGTTGGCT+TGG + chr3.4:75800635-75800654 MS.gene044128:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 75798645 75800662 75798645 ID=MS.gene044128
chr3.4 mRNA 75798645 75800662 75798645 ID=MS.gene044128.t1;Parent=MS.gene044128
chr3.4 exon 75798645 75798743 75798645 ID=MS.gene044128.t1.exon1;Parent=MS.gene044128.t1
chr3.4 CDS 75798645 75798743 75798645 ID=cds.MS.gene044128.t1;Parent=MS.gene044128.t1
chr3.4 exon 75799376 75799480 75799376 ID=MS.gene044128.t1.exon2;Parent=MS.gene044128.t1
chr3.4 CDS 75799376 75799480 75799376 ID=cds.MS.gene044128.t1;Parent=MS.gene044128.t1
chr3.4 exon 75799777 75799840 75799777 ID=MS.gene044128.t1.exon3;Parent=MS.gene044128.t1
chr3.4 CDS 75799777 75799840 75799777 ID=cds.MS.gene044128.t1;Parent=MS.gene044128.t1
chr3.4 exon 75799943 75800034 75799943 ID=MS.gene044128.t1.exon4;Parent=MS.gene044128.t1
chr3.4 CDS 75799943 75800034 75799943 ID=cds.MS.gene044128.t1;Parent=MS.gene044128.t1
chr3.4 exon 75800119 75800324 75800119 ID=MS.gene044128.t1.exon5;Parent=MS.gene044128.t1
chr3.4 CDS 75800119 75800324 75800119 ID=cds.MS.gene044128.t1;Parent=MS.gene044128.t1
chr3.4 exon 75800416 75800662 75800416 ID=MS.gene044128.t1.exon6;Parent=MS.gene044128.t1
chr3.4 CDS 75800416 75800662 75800416 ID=cds.MS.gene044128.t1;Parent=MS.gene044128.t1
Gene Sequence

>MS.gene044128

ATGAATATTTGGGTTTTGTTTGTGTTTCAGTACCATCCAGATGAGTGCAAAGGAAGAGATTGTTGGGCGCAGTTTTACTTGATCAATGAGGCTTATGATGTGAGTTTTCCTAAAATTTCACTAAATTATCCTTAATTTTCATTGCATAGTTAATTTAATTGTTATAATTAATTGGGTTGATTACTATTTTTAGATCCTTAAATATATGGACATTGATTGATATTGGAGATTTAAGATCAATCGGTTCACATTTGTTCTTTACTAAATAGTAACTTTTAAACAACCTTCACCATTGATTTGAAATACACTATTGAAACCACTCACAGTCATGTTTTGTTCAAATGCACAATTTATTTTGATGAACTACGCTATATCATGATATCAGATTTGAATTTTTAGTAAGTGGACTAAAGTGCCCAATATAATGGATTAATATTTTAGTGAATAAGGGTTTTGAAGTTTGTAGGATTGATGGTTCAGTGAGATTGGAACTATGATATAAAAGTGCAGGTCAGTACCAATGTTTCATTTTTTTCATGTGAAAACCATTTGTTTATTTCTCTGTAAGCTTATATCGACTATCATTATTGTTTCTTTATTTTGTTGAGGTTCAAAGTTTTTGCCAAAATTACAGTGGCACATTGTGAATCCAAACATGTGTTTAACTAATAGTGTGGATCAGTTGAAAACCTAGATATTAATGTTTTGTATTTTTGTGATTGGACTGTCAGATGAGTGGTGATTCTGGTATATCTGCTTTTCCTGAGGAAGACAACATATTCTTGTGGAAAAGAACAATAACCGGAAGCAAAGATACAGTGTTTGAAGCTAATAGAGTTTCCTCTTAAAGAAGCAAAAATATATATCCATGAAGGTCAAGTGTTTCAATATTTGTAATCTCTTTTTAGTGTTTCCCGTGTTTGTGTTTTTCAATTTCCAGTAGCAATATATGATGGATCAAGTGATGCATTTAGTTGATAATTGAAATATAAATTAGAAGAGTAAAATTTAGTATATGATTTTCTCAGCTGATTTGGTAACTTCATAGTATCTGAACTTTTAGGATTGCTTCAATGAGGTTTAACTGAAATGTGTTCTTCATTGTTGCCTAATTGGATACTGTTGTGAGGAGGAGCAAAGGCTTTTGGTGTATGAGTACATGGCAAGAGGGAGCTTGGAGAATCAATTGTTCAGAAGTATGTTGCATTTACTTTATTTTTACCAGTACTATATTATATACATATATTAATCATGTTGTAAGGTCTGATTTCTTATTTTCTTTGTTGTGATTCAAGCAGGATACTCTGCTACATTACCATGGTCAACTAGAATGAAAATTGCATTAGGTGCAGCTAAGGGACTAGCTTTCCTTCATGAAGCAGATAAACTTGTAATATATAGGGATTTCAAAACTTCTTATTTTTAGCATATTTATTGATTAATTAATGATGAATCAATTTCAATAATGTTGTAGTTAATGGTTACAGGTGTTTTGCTTGTGAAGGGTTTGAAGAATTCTACGTTGGTTTGGAGGTTGATCGTGTTGGCTTTTGGAATAAGCACTGGTAGCATAATTGGTTTTCTAGATATCAATGTTATTCAAATGCCTTTTTCTGGACCTAACATTGAACCTTGGGAGATTCCTTATGTGCATTATCCAAATCACAAAACTTATAGCAGGTGATTGAATTTTAAGTGTAGAATAAGAGATTTTGTTTCTGAATGTTTCTGAATTTTACTGATATTGATTGCATCGTTGTTTGTTTGTTAGGGAGGAATGCAGGTGCCACCCGCTGCGGTATTTTACTATTCTGTCGATGCAGAGATTTGGGAGTGGATGGTTTGAGACGTTTTTAAATAGTCATCCTAACATAAGCTCAAATGGGGAAATCTTTTCGGTTAAGGTTAGAAGGAGTAATATAACGACAATAACAGAGACTTTGGACACAATTTATAATCTAGACTGGTTTAATAGTGCTTCTAAAAATGAGTGCACGGCTGCTGTTGGCTTGGCTTGA
Protein sequence

>MS.gene044128.t1

MNIWVLFVFQYHPDECKGRDCWAQFYLINEAYDMSGDSGISAFPEEDNIFLWKRTITGSKDTVFEANREQRLLVYEYMARGSLENQLFRRYSATLPWSTRMKIALGAAKGLAFLHEADKLLMVTGVLLVKGLKNSTLVWRLIVLAFGISTGSIIGFLDINVIQMPFSGPNIEPWEIPYVHYPNHKTYSREECRCHPLRYFTILSMQRFGSGWFETFLNSHPNISSNGEIFSVKVRRSNITTITETLDTIYNLDWFNSASKNECTAAVGLA