AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044265

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044265.t1 MTR_3g080940 99.034 207 2 0 1 207 1 207 9.53e-152 419
MS.gene044265.t1 MTR_8g043650 49.746 197 95 1 1 197 1 193 2.87e-66 204
MS.gene044265.t1 MTR_1g105920 58.788 165 61 2 1 165 1 158 8.25e-66 202
MS.gene044265.t1 MTR_1g106070 54.023 174 80 0 1 174 1 174 2.92e-65 199
MS.gene044265.t1 MTR_3g052920 58.125 160 67 0 1 160 1 160 6.49e-65 200
MS.gene044265.t1 MTR_1g105910 51.309 191 83 1 1 181 1 191 8.48e-65 200
MS.gene044265.t1 MTR_1g108510 53.552 183 83 1 1 181 1 183 4.13e-64 198
MS.gene044265.t1 MTR_2g093190 54.098 183 82 1 1 181 1 183 2.14e-63 196
MS.gene044265.t1 MTR_2g030740 56.875 160 69 0 1 160 1 160 9.36e-63 195
MS.gene044265.t1 MTR_3g030770 53.005 183 84 1 1 181 1 183 9.83e-63 194
MS.gene044265.t1 MTR_1g012570 47.208 197 100 1 1 197 1 193 8.19e-61 190
MS.gene044265.t1 MTR_5g045560 51.786 168 81 0 1 168 1 168 1.78e-59 186
MS.gene044265.t1 MTR_1g108580 49.727 183 90 1 1 181 1 183 8.63e-58 182
MS.gene044265.t1 MTR_1g077360 53.012 166 78 0 1 166 1 166 3.58e-57 181
MS.gene044265.t1 MTR_1g075600 49.215 191 87 2 1 181 1 191 6.04e-57 180
MS.gene044265.t1 MTR_2g085250 48.315 178 92 0 1 178 1 178 8.28e-56 177
MS.gene044265.t1 MTR_2g085280 48.315 178 92 0 1 178 1 178 8.55e-56 177
MS.gene044265.t1 MTR_3g052870 63.077 130 48 0 1 130 1 130 1.60e-55 176
MS.gene044265.t1 MTR_5g055100 46.701 197 101 2 1 197 1 193 2.37e-54 173
MS.gene044265.t1 MTR_1g105905 51.948 154 74 0 21 174 4 157 2.41e-54 173
MS.gene044265.t1 MTR_5g053390 45.026 191 95 1 1 181 1 191 5.00e-53 170
MS.gene044265.t1 MTR_0121s0080 42.487 193 105 1 9 201 9 195 1.12e-49 161
MS.gene044265.t1 MTR_0121s0100 57.031 128 55 0 1 128 1 128 1.32e-48 155
MS.gene044265.t1 MTR_3g030780 55.039 129 58 0 1 129 1 129 1.89e-44 145
MS.gene044265.t1 MTR_7g062350 42.458 179 95 2 24 201 36 207 1.94e-43 146
MS.gene044265.t1 MTR_2g105290 39.080 174 102 1 1 174 4 173 1.37e-38 131
MS.gene044265.t1 MTR_8g086290 38.365 159 94 1 4 162 7 161 2.68e-34 120
MS.gene044265.t1 MTR_3g067910 55.769 104 46 0 21 124 2 105 3.10e-34 118
MS.gene044265.t1 MTR_1g075570 46.341 123 52 1 21 143 4 112 4.67e-32 114
MS.gene044265.t1 MTR_7g028448 39.264 163 87 2 2 164 5 155 3.01e-31 112
MS.gene044265.t1 MTR_4g036915 39.264 163 87 2 2 164 5 155 3.01e-31 112
MS.gene044265.t1 MTR_4g127140 37.500 184 101 3 1 174 4 183 7.70e-31 112
MS.gene044265.t1 MTR_4g131030 38.919 185 81 5 8 171 1 174 1.04e-29 109
MS.gene044265.t1 MTR_1g063160 39.412 170 84 5 8 171 1 157 9.21e-29 106
MS.gene044265.t1 MTR_4g094632 38.462 169 87 4 8 176 1 152 2.32e-28 104
MS.gene044265.t1 MTR_1g054265 42.308 130 73 1 8 137 1 128 3.46e-28 104
MS.gene044265.t1 MTR_8g046350 43.284 134 68 3 8 138 1 129 4.05e-27 101
MS.gene044265.t1 MTR_1g047550 38.158 152 82 2 8 159 1 140 4.74e-27 102
MS.gene044265.t1 MTR_8g079502 43.697 119 65 1 8 126 1 117 6.80e-27 101
MS.gene044265.t1 MTR_8g051580 38.889 162 72 4 8 165 1 139 2.53e-26 100
MS.gene044265.t1 MTR_1g108500 52.577 97 25 1 22 118 110 185 7.09e-25 99.8
MS.gene044265.t1 MTR_4g094638 33.333 156 91 2 8 162 1 144 3.75e-22 89.4
MS.gene044265.t1 MTR_3g067875 67.925 53 17 0 21 73 4 56 3.83e-21 83.2
MS.gene044265.t1 MTR_4g102530 35.484 124 60 3 10 123 3 116 2.15e-17 77.4
MS.gene044265.t1 MTR_3g067870 55.738 61 27 0 18 78 85 145 2.62e-17 75.9
MS.gene044265.t1 MTR_4g093970 47.059 85 40 2 8 92 27 106 7.23e-17 76.6
MS.gene044265.t1 MTR_3g067915 49.254 67 34 0 60 126 30 96 1.00e-16 72.8
MS.gene044265.t1 MTR_3g005530 46.377 69 37 0 8 76 1 69 2.39e-16 74.7
MS.gene044265.t1 MTR_5g066180 47.826 69 36 0 8 76 1 69 3.22e-16 74.7
MS.gene044265.t1 MTR_1g101970 47.826 69 36 0 8 76 1 69 3.24e-16 73.9
MS.gene044265.t1 MTR_2g009890 42.857 84 44 1 8 91 1 80 3.55e-16 75.1
MS.gene044265.t1 MTR_8g087860 27.273 209 119 5 2 178 11 218 3.89e-16 74.7
MS.gene044265.t1 MTR_6g464720 48.571 70 35 1 8 76 1 70 4.73e-16 74.3
MS.gene044265.t1 MTR_8g022970 28.750 160 99 3 10 162 19 170 6.53e-16 72.8
MS.gene044265.t1 MTR_8g033270 43.529 85 44 2 8 90 1 83 7.98e-16 73.9
MS.gene044265.t1 MTR_1g053070 47.222 72 38 0 8 79 1 72 1.23e-15 73.6
MS.gene044265.t1 MTR_3g452380 46.667 75 38 1 2 76 12 84 1.48e-15 73.2
MS.gene044265.t1 MTR_4g109830 31.953 169 91 6 8 172 1 149 2.23e-15 72.4
MS.gene044265.t1 MTR_0003s0590 45.000 80 44 0 8 87 1 80 2.97e-15 72.4
MS.gene044265.t1 MTR_3g102570 38.835 103 60 2 8 109 1 101 3.46e-15 73.2
MS.gene044265.t1 MTR_5g031000 44.928 69 38 0 8 76 1 69 6.36e-15 70.9
MS.gene044265.t1 MTR_5g031000 44.928 69 38 0 8 76 1 69 6.61e-15 71.2
MS.gene044265.t1 MTR_5g032520 32.759 174 83 6 8 172 1 149 6.76e-15 70.9
MS.gene044265.t1 MTR_5g032150 31.609 174 85 6 8 172 1 149 7.44e-15 70.9
MS.gene044265.t1 MTR_2g017865 44.928 69 38 0 8 76 16 84 1.68e-14 70.5
MS.gene044265.t1 MTR_7g075870 35.849 106 63 2 10 115 3 103 2.18e-14 69.3
MS.gene044265.t1 MTR_4g084740 44.444 72 39 1 8 78 1 72 2.92e-14 70.5
MS.gene044265.t1 MTR_3g109930 26.220 164 103 4 27 181 20 174 2.98e-14 68.2
MS.gene044265.t1 MTR_4g051538 47.619 84 44 0 1 84 1 84 4.56e-14 68.9
MS.gene044265.t1 MTR_8g033220 41.053 95 48 2 10 96 3 97 6.16e-14 68.6
MS.gene044265.t1 MTR_8g033220 41.053 95 48 2 10 96 3 97 6.94e-14 68.2
MS.gene044265.t1 MTR_8g066260 44.286 70 38 1 8 76 1 70 7.32e-14 68.6
MS.gene044265.t1 MTR_7g016630 40.541 74 43 1 8 80 1 74 8.09e-14 68.6
MS.gene044265.t1 MTR_3g437790 27.922 154 89 4 26 168 30 172 1.18e-13 67.0
MS.gene044265.t1 MTR_6g015975 42.857 70 39 1 8 76 1 70 2.87e-13 67.0
MS.gene044265.t1 MTR_7g075870 35.514 107 63 3 10 115 3 104 3.44e-13 66.2
MS.gene044265.t1 MTR_5g046790 30.328 122 76 3 8 124 1 118 3.97e-13 65.9
MS.gene044265.t1 MTR_2g461710 49.123 57 29 0 8 64 1 57 4.66e-13 62.0
MS.gene044265.t1 MTR_1g038300 45.070 71 37 1 8 76 1 71 8.06e-13 65.5
MS.gene044265.t1 MTR_7g016600 41.429 70 40 1 8 76 1 70 1.58e-12 64.7
MS.gene044265.t1 MTR_5g066960 48.276 58 30 0 8 65 1 58 1.96e-12 60.5
MS.gene044265.t1 MTR_5g021270 43.662 71 38 1 8 76 1 71 2.43e-12 63.9
MS.gene044265.t1 MTR_5g021270 43.662 71 38 1 8 76 1 71 2.45e-12 63.9
MS.gene044265.t1 MTR_5g046870 41.429 70 40 1 8 76 1 70 2.70e-12 61.6
MS.gene044265.t1 MTR_3g088615 38.028 71 42 1 8 76 1 71 3.60e-12 62.8
MS.gene044265.t1 MTR_4g093030 34.906 106 64 1 8 108 1 106 3.65e-12 62.4
MS.gene044265.t1 MTR_3g113030 40.845 71 40 1 8 76 1 71 7.73e-12 62.8
MS.gene044265.t1 MTR_3g084980 47.368 57 30 0 8 64 1 57 9.68e-12 62.4
MS.gene044265.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.04e-11 61.6
MS.gene044265.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.16e-11 61.2
MS.gene044265.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.19e-11 61.6
MS.gene044265.t1 MTR_4g036050 34.694 98 58 3 8 99 1 98 1.40e-11 61.2
MS.gene044265.t1 MTR_1g029670 36.620 71 43 1 8 76 1 71 1.58e-11 60.8
MS.gene044265.t1 MTR_7g075850 42.254 71 39 1 8 76 1 71 1.62e-11 62.0
MS.gene044265.t1 MTR_8g097090 45.614 57 31 0 8 64 1 57 1.74e-11 62.0
MS.gene044265.t1 MTR_4g109810 43.860 57 32 0 8 64 1 57 1.81e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044265.t1 AT5G60440 53.297 182 80 3 5 183 3 182 5.60e-58 185
MS.gene044265.t1 AT2G24840 56.604 159 64 2 7 162 61 217 4.18e-56 179
MS.gene044265.t1 AT4G36590 42.632 190 92 4 5 186 3 183 1.09e-40 139
MS.gene044265.t1 AT1G01530 37.306 193 109 4 5 196 3 184 1.40e-36 128
MS.gene044265.t1 AT1G65360 37.306 193 110 4 5 196 3 185 1.39e-32 117
MS.gene044265.t1 AT2G34440 36.095 169 101 4 8 171 1 167 1.10e-26 100
MS.gene044265.t1 AT3G04100 32.121 165 108 3 2 162 7 171 1.96e-24 95.9
MS.gene044265.t1 AT3G66656 41.803 122 63 2 8 123 1 120 1.49e-23 92.8
MS.gene044265.t1 AT1G72350 36.364 154 65 4 9 162 43 163 3.06e-21 87.8
MS.gene044265.t1 AT1G28460 34.722 144 90 2 1 141 1 143 3.16e-21 87.0
MS.gene044265.t1 AT4G22950 40.000 120 61 4 10 124 3 116 3.72e-18 78.6
MS.gene044265.t1 AT2G45650 44.186 86 41 1 8 86 1 86 7.69e-18 79.3
MS.gene044265.t1 AT4G22950 40.000 120 61 4 10 124 3 116 1.75e-17 77.8
MS.gene044265.t1 AT4G22950 40.000 120 61 4 10 124 3 116 1.75e-17 77.8
MS.gene044265.t1 AT4G37940 47.826 69 36 0 8 76 1 69 3.31e-17 77.0
MS.gene044265.t1 AT4G37940 47.826 69 36 0 8 76 1 69 3.49e-17 77.4
MS.gene044265.t1 AT3G57230 44.928 69 38 0 8 76 1 69 3.96e-17 75.1
MS.gene044265.t1 AT4G37940 47.826 69 36 0 8 76 1 69 3.99e-17 75.9
MS.gene044265.t1 AT4G24540 32.530 166 95 4 8 173 1 149 1.17e-16 75.5
MS.gene044265.t1 AT1G17310 34.615 156 66 3 9 164 48 167 1.23e-16 75.5
MS.gene044265.t1 AT1G17310 34.615 156 66 3 9 164 59 178 1.42e-16 75.5
MS.gene044265.t1 AT5G51870 49.315 73 37 0 4 76 20 92 1.80e-16 74.7
MS.gene044265.t1 AT1G29962 34.188 117 74 1 3 116 2 118 1.81e-16 74.3
MS.gene044265.t1 AT3G57230 44.928 69 38 0 8 76 1 69 2.06e-16 75.5
MS.gene044265.t1 AT3G57230 44.928 69 38 0 8 76 1 69 2.06e-16 75.5
MS.gene044265.t1 AT1G28450 30.612 147 95 3 1 141 1 146 2.07e-16 74.3
MS.gene044265.t1 AT5G51870 52.239 67 32 0 10 76 3 69 3.19e-16 73.6
MS.gene044265.t1 AT2G22630 47.826 69 36 0 8 76 1 69 3.28e-16 74.7
MS.gene044265.t1 AT2G22630 47.826 69 36 0 8 76 1 69 3.28e-16 74.7
MS.gene044265.t1 AT5G51870 52.239 67 32 0 10 76 3 69 4.92e-16 73.6
MS.gene044265.t1 AT1G47760 41.176 85 48 1 8 92 1 83 5.07e-16 73.2
MS.gene044265.t1 AT5G51870 50.000 70 35 0 7 76 10 79 7.16e-16 73.6
MS.gene044265.t1 AT5G13790 40.179 112 64 2 8 118 1 110 7.93e-16 74.3
MS.gene044265.t1 AT4G09960 44.928 69 38 0 8 76 1 69 8.07e-16 73.2
MS.gene044265.t1 AT4G09960 44.928 69 38 0 8 76 1 69 9.20e-16 73.6
MS.gene044265.t1 AT4G09960 44.928 69 38 0 8 76 2 70 9.24e-16 73.6
MS.gene044265.t1 AT5G51870 52.239 67 32 0 10 76 3 69 9.79e-16 73.2
MS.gene044265.t1 AT2G22540 36.923 130 74 3 8 129 1 130 1.07e-15 73.6
MS.gene044265.t1 AT2G22540 36.923 130 74 3 8 129 1 130 1.07e-15 73.6
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 1.14e-15 70.1
MS.gene044265.t1 AT4G09960 44.928 69 38 0 8 76 11 79 1.27e-15 73.2
MS.gene044265.t1 AT4G09960 40.789 76 45 0 1 76 20 95 1.59e-15 73.2
MS.gene044265.t1 AT2G45660 45.588 68 37 0 10 77 3 70 1.84e-15 71.2
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.00e-15 70.9
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.00e-15 70.9
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.00e-15 70.9
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.59e-15 70.5
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.59e-15 70.5
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.59e-15 70.5
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.59e-15 70.5
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 2.59e-15 70.5
MS.gene044265.t1 AT3G30260 47.143 70 36 1 8 76 1 70 2.90e-15 72.4
MS.gene044265.t1 AT3G58780 43.750 80 40 1 8 82 16 95 3.50e-15 72.0
MS.gene044265.t1 AT3G57390 36.508 126 69 4 8 124 1 124 3.64e-15 71.6
MS.gene044265.t1 AT2G42830 42.500 80 41 1 8 82 16 95 3.93e-15 72.0
MS.gene044265.t1 AT3G58780 43.750 80 40 1 8 82 22 101 3.94e-15 72.0
MS.gene044265.t1 AT4G09960 44.928 69 38 0 8 76 96 164 4.37e-15 72.8
MS.gene044265.t1 AT2G42830 42.500 80 41 1 8 82 16 95 4.51e-15 72.0
MS.gene044265.t1 AT2G45660 45.588 68 37 0 10 77 3 70 4.67e-15 71.2
MS.gene044265.t1 AT3G57390 36.508 126 69 4 8 124 1 124 5.10e-15 72.0
MS.gene044265.t1 AT5G13790 47.826 69 36 0 8 76 1 69 5.26e-15 72.0
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 5.30e-15 70.9
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 5.30e-15 70.9
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 6.14e-15 70.9
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 6.14e-15 70.9
MS.gene044265.t1 AT5G62165 39.241 79 48 0 10 88 3 81 6.14e-15 70.9
MS.gene044265.t1 AT1G77950 42.308 78 43 2 8 84 1 77 6.31e-15 71.6
MS.gene044265.t1 AT1G77950 42.308 78 43 2 8 84 1 77 6.31e-15 71.6
MS.gene044265.t1 AT1G77950 42.308 78 43 2 8 84 1 77 6.31e-15 71.6
MS.gene044265.t1 AT1G77950 42.308 78 43 2 8 84 1 77 6.31e-15 71.6
MS.gene044265.t1 AT2G14210 45.714 70 37 1 8 76 1 70 1.02e-14 70.9
MS.gene044265.t1 AT3G58780 43.750 80 40 1 8 82 16 95 1.10e-14 71.2
MS.gene044265.t1 AT1G71692 46.479 71 37 1 8 77 1 71 1.12e-14 70.1
MS.gene044265.t1 AT1G46408 49.351 77 35 2 10 82 5 81 1.27e-14 70.9
MS.gene044265.t1 AT2G14210 45.714 70 37 1 8 76 1 70 1.32e-14 70.5
MS.gene044265.t1 AT3G61120 44.928 69 38 0 8 76 1 69 1.48e-14 70.5
MS.gene044265.t1 AT1G77980 44.444 72 39 1 8 78 1 72 1.96e-14 70.9
MS.gene044265.t1 AT5G10140 45.714 70 37 1 8 76 1 70 1.97e-14 68.6
MS.gene044265.t1 AT5G60910 31.515 165 97 4 8 172 1 149 2.27e-14 69.7
MS.gene044265.t1 AT5G23260 46.250 80 41 1 3 80 12 91 2.35e-14 70.1
MS.gene044265.t1 AT5G23260 46.250 80 41 1 3 80 12 91 2.43e-14 70.1
MS.gene044265.t1 AT4G18960 45.588 68 37 0 9 76 18 85 2.52e-14 69.7
MS.gene044265.t1 AT5G10140 45.714 70 37 1 8 76 1 70 3.95e-14 68.2
MS.gene044265.t1 AT5G10140 45.714 70 37 1 8 76 1 70 4.07e-14 68.2
MS.gene044265.t1 AT5G51860 47.761 67 35 0 10 76 3 69 4.15e-14 68.6
MS.gene044265.t1 AT5G10140 45.714 70 37 1 8 76 1 70 4.37e-14 68.2
MS.gene044265.t1 AT1G22130 43.210 81 44 2 8 87 1 80 4.73e-14 70.1
MS.gene044265.t1 AT5G51860 47.761 67 35 0 10 76 3 69 5.76e-14 68.2
MS.gene044265.t1 AT1G69120 45.714 70 37 1 8 76 1 70 6.15e-14 68.6
MS.gene044265.t1 AT4G37435 33.333 174 96 7 8 168 1 167 6.21e-14 67.8
MS.gene044265.t1 AT4G11880 37.190 121 64 5 10 124 3 117 7.68e-14 67.4
MS.gene044265.t1 AT4G11880 37.190 121 64 5 10 124 3 117 7.68e-14 67.4
MS.gene044265.t1 AT1G26310 33.871 124 71 5 8 124 1 120 9.08e-14 68.6
MS.gene044265.t1 AT3G54340 30.921 152 81 3 8 157 1 130 1.13e-13 67.8
MS.gene044265.t1 AT1G69120 45.714 70 37 1 8 76 1 70 1.20e-13 68.2
MS.gene044265.t1 AT2G22540 36.154 130 70 4 8 129 1 125 1.90e-13 67.4
MS.gene044265.t1 AT5G65050 47.143 70 36 1 8 76 1 70 2.16e-13 65.9
MS.gene044265.t1 AT5G49490 39.326 89 48 2 10 92 46 134 2.44e-13 67.4
MS.gene044265.t1 AT4G11880 37.190 121 64 5 10 124 3 117 3.33e-13 66.2
MS.gene044265.t1 AT4G11880 37.190 121 64 5 10 124 3 117 3.33e-13 66.2
MS.gene044265.t1 AT5G23260 46.667 75 38 1 8 80 1 75 4.54e-13 66.2
MS.gene044265.t1 AT5G65050 47.143 70 36 1 8 76 1 70 4.95e-13 65.5
MS.gene044265.t1 AT5G23260 46.667 75 38 1 8 80 1 75 5.07e-13 66.2
MS.gene044265.t1 AT5G65050 42.222 90 50 2 8 96 1 89 5.55e-13 65.1
MS.gene044265.t1 AT5G65050 47.143 70 36 1 8 76 1 70 5.61e-13 65.1
MS.gene044265.t1 AT5G49420 41.558 77 41 1 10 82 8 84 6.44e-13 66.6
MS.gene044265.t1 AT5G38620 41.558 77 41 1 10 82 6 82 6.61e-13 66.6
MS.gene044265.t1 AT5G65060 47.143 70 36 1 8 76 1 70 1.04e-12 64.3
MS.gene044265.t1 AT5G65060 47.143 70 36 1 8 76 1 70 1.27e-12 64.3
MS.gene044265.t1 AT5G65060 47.143 70 36 1 8 76 1 70 1.34e-12 63.9
MS.gene044265.t1 AT2G03710 49.123 57 29 0 8 64 1 57 2.40e-12 63.5
MS.gene044265.t1 AT3G58780 41.333 75 42 1 8 82 16 88 2.46e-12 64.3
MS.gene044265.t1 AT5G15800 41.429 70 40 1 8 76 1 70 3.08e-12 63.9
MS.gene044265.t1 AT3G58780 47.458 59 31 0 8 66 16 74 3.58e-12 64.3
MS.gene044265.t1 AT1G18750 36.471 85 51 2 8 90 1 84 3.98e-12 64.7
MS.gene044265.t1 AT5G65070 40.000 70 41 1 8 76 1 70 4.39e-12 61.6
MS.gene044265.t1 AT5G04640 43.038 79 41 2 10 84 5 83 4.61e-12 64.3
MS.gene044265.t1 AT5G15800 41.429 70 40 1 8 76 1 70 4.70e-12 63.5
MS.gene044265.t1 AT1G18750 36.471 85 51 2 8 90 1 84 5.08e-12 64.3
MS.gene044265.t1 AT1G18750 36.471 85 51 2 8 90 1 84 5.43e-12 64.3
MS.gene044265.t1 AT2G03710 49.123 57 29 0 8 64 1 57 6.73e-12 63.2
MS.gene044265.t1 AT2G03710 49.123 57 29 0 8 64 1 57 7.22e-12 63.2
MS.gene044265.t1 AT5G20240 38.028 71 42 1 8 76 1 71 9.47e-12 60.8
MS.gene044265.t1 AT5G65070 40.000 70 41 1 8 76 1 70 1.07e-11 62.0
MS.gene044265.t1 AT3G02310 45.614 57 31 0 8 64 1 57 1.12e-11 61.6
MS.gene044265.t1 AT5G20240 38.028 71 42 1 8 76 1 71 1.35e-11 61.6
MS.gene044265.t1 AT1G24260 45.614 57 31 0 8 64 1 57 1.80e-11 62.0
MS.gene044265.t1 AT1G24260 45.614 57 31 0 8 64 1 57 1.89e-11 62.0
MS.gene044265.t1 AT1G24260 45.614 57 31 0 8 64 1 57 1.93e-11 61.6
MS.gene044265.t1 AT5G65080 38.961 77 46 1 1 76 1 77 2.30e-11 60.8
MS.gene044265.t1 AT5G65070 40.000 70 41 1 8 76 1 70 2.53e-11 61.2
MS.gene044265.t1 AT3G02310 45.614 57 31 0 8 64 1 57 2.70e-11 61.6
MS.gene044265.t1 AT5G65070 40.000 70 41 1 8 76 1 70 3.81e-11 60.5
MS.gene044265.t1 AT5G65080 41.935 62 36 0 1 62 1 62 6.37e-11 59.7

Find 38 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGAATTGCTCCAATTAA+AGG 0.119085 3.3:-68539657 MS.gene044265:CDS
CCTCAATAGAAACCTTTAAT+TGG 0.230669 3.3:+68539645 None:intergenic
AAGCTAGGCAAATGCAATTT+TGG 0.234014 3.3:-68539709 MS.gene044265:CDS
GCCAAATGAAAAGGCCTTAT+TGG 0.240870 3.3:+68539919 None:intergenic
TCTTCAAATATTGGAGCTAA+TGG 0.264087 3.3:-68539560 MS.gene044265:CDS
AATGTTTCTTCTTCAAATAT+TGG 0.290840 3.3:-68539569 MS.gene044265:CDS
AAACCAAGATAATAGCTATT+AGG 0.328747 3.3:+68539500 None:intergenic
GCGAGCTTTGTACTCTTTGT+GGG 0.351326 3.3:-68539973 MS.gene044265:CDS
TTCAAGCCAAGTTCATCAAC+AGG 0.363427 3.3:+68539677 None:intergenic
CTTCCTAATAGCTATTATCT+TGG 0.392270 3.3:-68539503 MS.gene044265:CDS
TCAATGATAGACTCAACTTC+TGG 0.393804 3.3:+68539893 None:intergenic
AGCGAGCTTTGTACTCTTTG+TGG 0.399076 3.3:-68539974 MS.gene044265:CDS
CCAATTAAAGGTTTCTATTG+AGG 0.402441 3.3:-68539645 MS.gene044265:CDS
TTCTGGATGGCCAAATGAAA+AGG 0.462388 3.3:+68539910 None:intergenic
GAGGACCTCAGGAAGAATCT+TGG 0.482352 3.3:-68539626 MS.gene044265:CDS
AATATTTGAAGAAGAAACAT+TGG 0.484454 3.3:+68539571 None:intergenic
GAAAGCCCTGTTGATGAACT+TGG 0.488472 3.3:-68539683 MS.gene044265:CDS
AGGTTTCTATTGAGGACCTC+AGG 0.504170 3.3:-68539637 MS.gene044265:CDS
CACATTGAGATCGCGGACAT+TGG 0.511795 3.3:+68539802 None:intergenic
TTCTATGAGCCTCAACAAGT+TGG 0.515367 3.3:+68539828 None:intergenic
AGATAATAGCTATTAGGAAG+TGG 0.515794 3.3:+68539506 None:intergenic
AATGAAAAGGCCTTATTGGC+CGG 0.531850 3.3:+68539923 None:intergenic
GATAATAGCTATTAGGAAGT+GGG 0.532917 3.3:+68539507 None:intergenic
GCTTCTTCTCAATCTCAAGA+TGG 0.540170 3.3:+68539759 None:intergenic
AATTGCTAGCAAATGCATGA+TGG 0.549591 3.3:-68539600 MS.gene044265:CDS
GCTTTGTACTCTTTGTGGGG+TGG 0.554210 3.3:-68539969 MS.gene044265:CDS
TTGAGATTGAGAAGAAGCAA+GGG 0.559206 3.3:-68539754 MS.gene044265:CDS
TAGATCATGTGAGAAAAGCT+AGG 0.577921 3.3:-68539724 MS.gene044265:CDS
TGGTGAGAACTAGACTCTTG+TGG 0.583837 3.3:+68539848 None:intergenic
TAGTTCTCACCAACTTGTTG+AGG 0.589387 3.3:-68539837 MS.gene044265:CDS
CGAGCTTTGTACTCTTTGTG+GGG 0.591598 3.3:-68539972 MS.gene044265:CDS
CTTGAGATTGAGAAGAAGCA+AGG 0.611768 3.3:-68539755 MS.gene044265:CDS
TGATAGACTCAACTTCTGGA+TGG 0.619728 3.3:+68539897 None:intergenic
ATAATAGCTATTAGGAAGTG+GGG 0.630969 3.3:+68539508 None:intergenic
TTAGTTGCACATTGAGATCG+CGG 0.641507 3.3:+68539795 None:intergenic
TCAAGCCAAGTTCATCAACA+GGG 0.666202 3.3:+68539678 None:intergenic
TGAGATTGAGAAGAAGCAAG+GGG 0.668695 3.3:-68539753 MS.gene044265:CDS
TGAGAACTAGACTCTTGTGG+AGG 0.704318 3.3:+68539851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTGAAGAAGAAACAT+TGG + chr3.3:68540013-68540032 None:intergenic 20.0%
!! AATGTTTCTTCTTCAAATAT+TGG - chr3.3:68540012-68540031 MS.gene044265:CDS 20.0%
!!! ACTTGTAAATGACTTTTTTT+AGG + chr3.3:68539547-68539566 None:intergenic 20.0%
!!! TTTTAGGTATTTTCTCAATA+GGG + chr3.3:68539531-68539550 None:intergenic 20.0%
!!! TTTTTAGGTATTTTCTCAAT+AGG + chr3.3:68539532-68539551 None:intergenic 20.0%
! AAACCAAGATAATAGCTATT+AGG + chr3.3:68540084-68540103 None:intergenic 25.0%
!!! TCAAAGAAAAAGACTAGTTT+AGG - chr3.3:68539493-68539512 MS.gene044265:CDS 25.0%
AGATAATAGCTATTAGGAAG+TGG + chr3.3:68540078-68540097 None:intergenic 30.0%
ATAATAGCTATTAGGAAGTG+GGG + chr3.3:68540076-68540095 None:intergenic 30.0%
CCAATTAAAGGTTTCTATTG+AGG - chr3.3:68539936-68539955 MS.gene044265:CDS 30.0%
CCTCAATAGAAACCTTTAAT+TGG + chr3.3:68539939-68539958 None:intergenic 30.0%
CTTCCTAATAGCTATTATCT+TGG - chr3.3:68540078-68540097 MS.gene044265:CDS 30.0%
GAATGAATTGCTCCAATTAA+AGG - chr3.3:68539924-68539943 MS.gene044265:CDS 30.0%
GATAATAGCTATTAGGAAGT+GGG + chr3.3:68540077-68540096 None:intergenic 30.0%
TCTTCAAATATTGGAGCTAA+TGG - chr3.3:68540021-68540040 MS.gene044265:CDS 30.0%
!!! ATTGGAGCTAATGGATTTTT+AGG - chr3.3:68540030-68540049 MS.gene044265:CDS 30.0%
!!! CTAATGGATTTTTAGGTGTA+GGG - chr3.3:68540037-68540056 MS.gene044265:CDS 30.0%
AATTGCTAGCAAATGCATGA+TGG - chr3.3:68539981-68540000 MS.gene044265:CDS 35.0%
TAGATCATGTGAGAAAAGCT+AGG - chr3.3:68539857-68539876 MS.gene044265:CDS 35.0%
TCAATGATAGACTCAACTTC+TGG + chr3.3:68539691-68539710 None:intergenic 35.0%
TTGAGATTGAGAAGAAGCAA+GGG - chr3.3:68539827-68539846 MS.gene044265:CDS 35.0%
! AAGCTAGGCAAATGCAATTT+TGG - chr3.3:68539872-68539891 MS.gene044265:CDS 35.0%
! TTTTTCCAAGATTCTTCCTG+AGG + chr3.3:68539963-68539982 None:intergenic 35.0%
!! TAGGCAAATGCAATTTTGGT+GGG - chr3.3:68539876-68539895 MS.gene044265:CDS 35.0%
!!! GCTAATGGATTTTTAGGTGT+AGG - chr3.3:68540036-68540055 MS.gene044265:CDS 35.0%
!!! TGCAATTGTTGTTTTCTCTC+CGG - chr3.3:68539639-68539658 MS.gene044265:CDS 35.0%
CTTGAGATTGAGAAGAAGCA+AGG - chr3.3:68539826-68539845 MS.gene044265:CDS 40.0%
GCTTCTTCTCAATCTCAAGA+TGG + chr3.3:68539825-68539844 None:intergenic 40.0%
TCAAGCCAAGTTCATCAACA+GGG + chr3.3:68539906-68539925 None:intergenic 40.0%
TGAGATTGAGAAGAAGCAAG+GGG - chr3.3:68539828-68539847 MS.gene044265:CDS 40.0%
TGATAGACTCAACTTCTGGA+TGG + chr3.3:68539687-68539706 None:intergenic 40.0%
TTAGTTGCACATTGAGATCG+CGG + chr3.3:68539789-68539808 None:intergenic 40.0%
TTCAAGCCAAGTTCATCAAC+AGG + chr3.3:68539907-68539926 None:intergenic 40.0%
TTCTATGAGCCTCAACAAGT+TGG + chr3.3:68539756-68539775 None:intergenic 40.0%
TTCTGGATGGCCAAATGAAA+AGG + chr3.3:68539674-68539693 None:intergenic 40.0%
! CTAGGCAAATGCAATTTTGG+TGG - chr3.3:68539875-68539894 MS.gene044265:CDS 40.0%
! GCCAAATGAAAAGGCCTTAT+TGG + chr3.3:68539665-68539684 None:intergenic 40.0%
! GCCAATAAGGCCTTTTCATT+TGG - chr3.3:68539661-68539680 MS.gene044265:CDS 40.0%
! TCGTTCCGGACTTTTCAAAA+AGG - chr3.3:68539582-68539601 MS.gene044265:CDS 40.0%
!! AATGAAAAGGCCTTATTGGC+CGG + chr3.3:68539661-68539680 None:intergenic 40.0%
!! ACATTTTCTAAGCGTCGTTC+CGG - chr3.3:68539568-68539587 MS.gene044265:CDS 40.0%
!! TAGTTCTCACCAACTTGTTG+AGG - chr3.3:68539744-68539763 MS.gene044265:CDS 40.0%
!!! GCTAGCCTTTTTGAAAAGTC+CGG + chr3.3:68539590-68539609 None:intergenic 40.0%
AGGTTTCTATTGAGGACCTC+AGG - chr3.3:68539944-68539963 MS.gene044265:CDS 45.0%
TGAGAACTAGACTCTTGTGG+AGG + chr3.3:68539733-68539752 None:intergenic 45.0%
TGGTGAGAACTAGACTCTTG+TGG + chr3.3:68539736-68539755 None:intergenic 45.0%
! AGCGAGCTTTGTACTCTTTG+TGG - chr3.3:68539607-68539626 MS.gene044265:CDS 45.0%
! CGAGCTTTGTACTCTTTGTG+GGG - chr3.3:68539609-68539628 MS.gene044265:CDS 45.0%
! GAAAGCCCTGTTGATGAACT+TGG - chr3.3:68539898-68539917 MS.gene044265:CDS 45.0%
! GCGAGCTTTGTACTCTTTGT+GGG - chr3.3:68539608-68539627 MS.gene044265:CDS 45.0%
! TGTTTTCTCTCCGGCCAATA+AGG - chr3.3:68539648-68539667 MS.gene044265:CDS 45.0%
CACATTGAGATCGCGGACAT+TGG + chr3.3:68539782-68539801 None:intergenic 50.0%
GAGGACCTCAGGAAGAATCT+TGG - chr3.3:68539955-68539974 MS.gene044265:CDS 50.0%
GCTTTGTACTCTTTGTGGGG+TGG - chr3.3:68539612-68539631 MS.gene044265:CDS 50.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 68539490 68540113 68539490 ID=MS.gene044265
chr3.3 mRNA 68539490 68540113 68539490 ID=MS.gene044265.t1;Parent=MS.gene044265
chr3.3 exon 68539490 68540113 68539490 ID=MS.gene044265.t1.exon1;Parent=MS.gene044265.t1
chr3.3 CDS 68539490 68540113 68539490 ID=cds.MS.gene044265.t1;Parent=MS.gene044265.t1
Gene Sequence

>MS.gene044265

ATGTCAAAGAAAAAGACTAGTTTAGGTCGTCAAAAAATCCCTATTGAGAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGTCGTTCCGGACTTTTCAAAAAGGCTAGCGAGCTTTGTACTCTTTGTGGGGTGGAAATTGCAATTGTTGTTTTCTCTCCGGCCAATAAGGCCTTTTCATTTGGCCATCCAGAAGTTGAGTCTATCATTGATCGTTATCTTAGTCGAAATCCTCCACAAGAGTCTAGTTCTCACCAACTTGTTGAGGCTCATAGAAATGCCAATGTCCGCGATCTCAATGTGCAACTAACTCAACTTCTTAGCCATCTTGAGATTGAGAAGAAGCAAGGGGAAGAGATAGATCATGTGAGAAAAGCTAGGCAAATGCAATTTTGGTGGGAAAGCCCTGTTGATGAACTTGGCTTGAATGAATTGCTCCAATTAAAGGTTTCTATTGAGGACCTCAGGAAGAATCTTGGAAAAATTGCTAGCAAATGCATGATGGAACAATCCAATGTTTCTTCTTCAAATATTGGAGCTAATGGATTTTTAGGTGTAGGGATTAATATTGCTTCCCCACTTCCTAATAGCTATTATCTTGGTTTTCGAATTTGA
Protein sequence

>MS.gene044265.t1

MSKKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKKQGEEIDHVRKARQMQFWWESPVDELGLNELLQLKVSIEDLRKNLGKIASKCMMEQSNVSSSNIGANGFLGVGINIASPLPNSYYLGFRI