AlfalfaGEDB | MS.gene044279

M. sativa cultivar XinJiangDaYe / MS.gene044279

KEGG: -
GO: -
PFAM: PF09425.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044279.t1	KEH35169.1	89.3	122	12	1	1	121	52	173	1.90E-50	208.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044279.t1	A0A072UZD5	89.3	122	12	1	1	121	52	173	1.4e-50	208.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene044279.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044279.t1	MTR_3g081210	89.344	122	12	1	1	121	52	173	2.45e-74	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 20 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCTGTGGTGTCCATTGCG+AGG	0.627615	3.3:+68770929	None:intergenic
ACACCACAGATTTGACGAAA+AGG	0.545745	3.3:-68770918	MS.gene044279:CDS
ATGCACTAGGTTGCATTGAA+AGG	0.491779	3.3:+68770475	None:intergenic
ATGGTTGGCAAGTCAAGAAA+TGG	0.426643	3.3:-68770541	MS.gene044279:CDS
ATTTGACGAAAAGGAGCTTC+AGG	0.413840	3.3:-68770909	MS.gene044279:intron
CAAGAAATGGATGGAAAGAA+TGG	0.480394	3.3:-68770528	MS.gene044279:CDS
CATGAGTTACAATAGAGAGG+TGG	0.687315	3.3:+68770367	None:intergenic
CTTGATGGAAAAGCCATGTG+AGG	0.674355	3.3:+68770440	None:intergenic
CTTGTTGCAAATCCTCGCAA+TGG	0.611244	3.3:-68770941	MS.gene044279:CDS
GATGAAACGAAATTGTTGTT+TGG	0.350812	3.3:-68771109	MS.gene044279:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATCGCATGCAAAAAGTT+AGG	+	chr3.3:68770650-68770669	None:intergenic	30.0%
GATAGAATTTGAGTCGTTTA+TGG	-	chr3.3:68770420-68770439	MS.gene044279:CDS	30.0%
GTGTATGGCAAAAAAAAACA+TGG	-	chr3.3:68770673-68770692	MS.gene044279:intron	30.0%
TATCATGAGTTACAATAGAG+AGG	+	chr3.3:68771085-68771104	None:intergenic	30.0%
CAAGAAATGGATGGAAAGAA+TGG	-	chr3.3:68770918-68770937	MS.gene044279:CDS	35.0%
TCCTATTCTTTCTCTTCTCA+AGG	+	chr3.3:68771049-68771068	None:intergenic	35.0%
TCCTTGAGAAGAGAAAGAAT+AGG	-	chr3.3:68771045-68771064	MS.gene044279:intron	35.0%
ACACCACAGATTTGACGAAA+AGG	-	chr3.3:68770528-68770547	MS.gene044279:CDS	40.0%
ACATTGATCATTACACGGTG+TGG	+	chr3.3:68770745-68770764	None:intergenic	40.0%
ATGCACTAGGTTGCATTGAA+AGG	+	chr3.3:68770974-68770993	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	68770338	68771130	68770338	ID=MS.gene044279
chr3.3	mRNA	68770338	68771130	68770338	ID=MS.gene044279.t1;Parent=MS.gene044279
chr3.3	exon	68771087	68771130	68771087	ID=MS.gene044279.t1.exon1;Parent=MS.gene044279.t1
chr3.3	CDS	68771087	68771130	68771087	ID=cds.MS.gene044279.t1;Parent=MS.gene044279.t1
chr3.3	exon	68770910	68770991	68770910	ID=MS.gene044279.t1.exon2;Parent=MS.gene044279.t1
chr3.3	CDS	68770910	68770991	68770910	ID=cds.MS.gene044279.t1;Parent=MS.gene044279.t1
chr3.3	exon	68770338	68770577	68770338	ID=MS.gene044279.t1.exon3;Parent=MS.gene044279.t1
chr3.3	CDS	68770338	68770577	68770338	ID=cds.MS.gene044279.t1;Parent=MS.gene044279.t1

Gene Sequence

>MS.gene044279

ATGAAACGAAATTGTTGTTTGGATTCATCATCTCGTAAATCAATGTAAGTGATTTCAAAGTTTTTTTCATCTTCATCATCTTGATAGAATTTGAGTCGTTTATGGTTTTTGTTAAACTCTTGGAATTTTTTTTTTGTAGGAAAGAGAAGTTGAACGTAAACAAGAAACTTGTTGCAAATCCTCGCAATGGACACCACAGATTTGACGAAAAGGAGCTTCAGGTAAATATGCGTATCTAAAAACATCATTTTTGACGATTTCTTCATCCTTGTTTTGTGGAAGAAAATTTGGCAATTTAATAATTATTTTCCTAACTTTTTGCATGCGATAATTACGTGTATGGCAAAAAAAAACATGGACAAATATTTTTTGACAATAAAACATGCACAAATAAACTCCCTTGACCACACCGTGTAATGATCAATGTATAACTTATTTTTGTCACAAAAAAACATTATTACTATGATAATTTTCTCCAGTGAATATACCTATCTTTTTCATAATGTAAATCTTAATATATCTATTTTTATCATTGGTTAAATTTTGGTTGCAGGCTAGAGCTATAATATGGTTGGCAAGTCAAGAAATGGATGGAAAGAATGGTAGCAACAAAGAATCAACTCCAACACTATCCCTTTCAATGCAACCTAGTGCATTACAAATGCATGCCTCACATGGCTTTTCCATCAAGCGATCACTTCAAAATTTCCTTGAGAAGAGAAAGAATAGGATTCAAAGTTACCACCTCTCTATTGTAACTCATGATAATGATAATAATAGTAGTACAAATTAG

Protein sequence

>MS.gene044279.t1

MKRNCCLDSSSRKSMKEKLNVNKKLVANPRNGHHRFDEKELQARAIIWLASQEMDGKNGSNKESTPTLSLSMQPSALQMHASHGFSIKRSLQNFLEKRKNRIQSYHLSIVTHDNDNNSSTN