Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044350.t1 | XP_013461190.1 | 98.6 | 582 | 8 | 0 | 1 | 582 | 1 | 582 | 0.00E+00 | 1158.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044350.t1 | Q9SJ85 | 72.5 | 561 | 141 | 3 | 9 | 564 | 19 | 571 | 2.5e-237 | 822.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044350.t1 | A0A072UZJ2 | 98.6 | 582 | 8 | 0 | 1 | 582 | 1 | 582 | 0.0e+00 | 1158.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene044350.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044350.t1 | MTR_3g082870 | 98.456 | 583 | 9 | 0 | 1 | 583 | 1 | 583 | 0.0 | 1188 |
| MS.gene044350.t1 | MTR_3g082870 | 97.599 | 583 | 8 | 1 | 1 | 583 | 1 | 577 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044350.t1 | AT2G04740 | 72.744 | 554 | 138 | 3 | 16 | 564 | 26 | 571 | 0.0 | 834 |
| MS.gene044350.t1 | AT2G04740 | 71.144 | 402 | 103 | 3 | 16 | 412 | 26 | 419 | 0.0 | 588 |
| MS.gene044350.t1 | AT2G04740 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
| MS.gene044350.t1 | AT2G04740 | 71.392 | 388 | 98 | 3 | 16 | 398 | 26 | 405 | 0.0 | 568 |
Find 128 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCTTGATCATTATTT+AGG | 0.129432 | 3.4:-78067797 | None:intergenic |
| ATAATTCATCTTTCCCTTCA+TGG | 0.209480 | 3.4:-78066033 | None:intergenic |
| TTGATGATTTACGTGATAAA+TGG | 0.228719 | 3.4:+78067823 | MS.gene044350:CDS |
| TCGATGCTAGAATAACTTTA+TGG | 0.240325 | 3.4:-78065967 | None:intergenic |
| GACTTAGACCCTTCCGATTT+CGG | 0.267048 | 3.4:+78063046 | MS.gene044350:CDS |
| GGCAAATAATTCAAAATTAC+AGG | 0.300060 | 3.4:-78067679 | None:intergenic |
| TCCGGTGGATTTCAGTTTCC+TGG | 0.303043 | 3.4:+78063430 | MS.gene044350:CDS |
| CTTCAGGTGATGCCATTTCT+AGG | 0.304251 | 3.4:-78066872 | None:intergenic |
| TATGAGAATGGTCAAGATAA+TGG | 0.315888 | 3.4:+78065842 | MS.gene044350:CDS |
| TTGCCGATACAAAAGAATTC+CGG | 0.318461 | 3.4:+78067697 | MS.gene044350:CDS |
| ACAACTGTCCCGAGCATGCC+TGG | 0.328006 | 3.4:+78067768 | MS.gene044350:CDS |
| AACCAATGGCAAAGCTCTTC+AGG | 0.332097 | 3.4:-78066888 | None:intergenic |
| TGCTCCGAACACACGTTTGA+CGG | 0.338738 | 3.4:+78063271 | MS.gene044350:CDS |
| TAGAGAGCAGATGCTAAGTT+AGG | 0.345187 | 3.4:+78068125 | MS.gene044350:CDS |
| CTTGGAAAACGTCGCCGTTT+GGG | 0.353575 | 3.4:-78063093 | None:intergenic |
| TTACTCTGCTCTTAATTTGA+AGG | 0.354172 | 3.4:+78063306 | MS.gene044350:CDS |
| CTGAATAAAAGAAATGTATA+AGG | 0.355396 | 3.4:-78065571 | None:intergenic |
| TATGACCCTGTGAGCTTCAA+TGG | 0.355838 | 3.4:-78065441 | None:intergenic |
| ACATCAGCAAGATCATTTAG+AGG | 0.359931 | 3.4:-78065911 | None:intergenic |
| ATTTCCTTGATCATTATTTA+GGG | 0.362505 | 3.4:-78067796 | None:intergenic |
| GCAGGAAGCCTGTCTTCTTC+AGG | 0.365112 | 3.4:-78065776 | None:intergenic |
| TGTCCCGCCAATTCGCATTC+CGG | 0.366372 | 3.4:+78063412 | MS.gene044350:CDS |
| CTGCTCTTAATTTGAAGGTT+AGG | 0.367208 | 3.4:+78063311 | MS.gene044350:CDS |
| TGCCGATACAAAAGAATTCC+GGG | 0.375788 | 3.4:+78067698 | MS.gene044350:CDS |
| CCTGAAATTACAGCGGTGAT+TGG | 0.383019 | 3.4:-78068002 | None:intergenic |
| GCTTGGAAAACGTCGCCGTT+TGG | 0.392528 | 3.4:-78063094 | None:intergenic |
| AGATAATGGAATTGATGAAT+TGG | 0.393017 | 3.4:+78065856 | MS.gene044350:CDS |
| CAGGTACACCGATCGTTTGC+AGG | 0.393496 | 3.4:+78066672 | MS.gene044350:intron |
| AGAGATTGCTGTGGATGATA+TGG | 0.401698 | 3.4:+78065601 | MS.gene044350:CDS |
| TCAAATTCCACTTATGAGAA+TGG | 0.404180 | 3.4:+78065830 | MS.gene044350:CDS |
| ACGGTCGAGGTCGCCGGCGC+GGG | 0.409392 | 3.4:-78063119 | None:intergenic |
| ATCTTGACCATTCTCATAAG+TGG | 0.413032 | 3.4:-78065837 | None:intergenic |
| GGTCGCCGGCGCGGGAGGCT+TGG | 0.425592 | 3.4:-78063111 | None:intergenic |
| CAAGCGCCTAGAGATGCTTA+TGG | 0.430680 | 3.4:+78067902 | MS.gene044350:CDS |
| TTGACTTTACCGCCACCATC+TGG | 0.432801 | 3.4:+78067729 | MS.gene044350:CDS |
| TCAGCCACCGCACGCTTAAG+AGG | 0.432979 | 3.4:-78066834 | None:intergenic |
| GCAGGAAATAAATCCAGATC+AGG | 0.444091 | 3.4:+78066690 | MS.gene044350:CDS |
| GGGGACTGATGTGCCGAAAT+CGG | 0.446957 | 3.4:-78063059 | None:intergenic |
| CTCTACTACGCTTGTCTCGC+CGG | 0.450922 | 3.4:+78063205 | MS.gene044350:CDS |
| AAATCCACCGGAATGCGAAT+TGG | 0.454070 | 3.4:-78063419 | None:intergenic |
| CGTCAACGCACGTGACCAAT+GGG | 0.454729 | 3.4:+78063171 | MS.gene044350:CDS |
| ACGTCAACGCACGTGACCAA+TGG | 0.460070 | 3.4:+78063170 | MS.gene044350:CDS |
| CTCATAAGTGGAATTTGAAA+GGG | 0.462115 | 3.4:-78065825 | None:intergenic |
| AGGGAAGACCCAGGCATGCT+CGG | 0.478303 | 3.4:-78067777 | None:intergenic |
| CTTGGTGCCACACCTAGAAA+TGG | 0.481090 | 3.4:+78066860 | MS.gene044350:CDS |
| GTCACCGTCAAACGTGTGTT+CGG | 0.482387 | 3.4:-78063275 | None:intergenic |
| ACGGAGACGGTCGAGGTCGC+CGG | 0.484646 | 3.4:-78063125 | None:intergenic |
| CGTTAACGCCGCATTCAAGA+AGG | 0.487687 | 3.4:-78063150 | None:intergenic |
| AGCAAGACTCTCACGTATGA+AGG | 0.487920 | 3.4:+78066006 | MS.gene044350:CDS |
| TCTCATAAGTGGAATTTGAA+AGG | 0.493040 | 3.4:-78065826 | None:intergenic |
| GAATTGATGAATTGGTATCT+AGG | 0.495038 | 3.4:+78065864 | MS.gene044350:CDS |
| AACACACGTTTGACGGTGAC+CGG | 0.496734 | 3.4:+78063278 | MS.gene044350:CDS |
| GCAGAGCATGAAAAGTCATC+AGG | 0.503518 | 3.4:+78067930 | MS.gene044350:CDS |
| GCGTGCGGTGGCTGATGTCT+TGG | 0.504420 | 3.4:+78066842 | MS.gene044350:CDS |
| AGGATTCTACGCAAGGCTGC+AGG | 0.504870 | 3.4:-78065794 | None:intergenic |
| TCTTCCCTAAATAATGATCA+AGG | 0.508410 | 3.4:+78067792 | MS.gene044350:CDS |
| GCTCGTATGCTTCTCGAAAA+CGG | 0.515902 | 3.4:+78063241 | MS.gene044350:CDS |
| CCCGCCAATTCGCATTCCGG+TGG | 0.516474 | 3.4:+78063415 | MS.gene044350:CDS |
| GGGAAGACCCAGGCATGCTC+GGG | 0.516596 | 3.4:-78067776 | None:intergenic |
| CAACTGTCCCGAGCATGCCT+GGG | 0.516727 | 3.4:+78067769 | MS.gene044350:CDS |
| CGTATGAAGGATTTCCATGA+AGG | 0.522102 | 3.4:+78066019 | MS.gene044350:CDS |
| ATGACCCTGTGAGCTTCAAT+GGG | 0.523451 | 3.4:-78065440 | None:intergenic |
| TAATTCAAAATTACAGGCAA+TGG | 0.524676 | 3.4:-78067673 | None:intergenic |
| TGATGAATTGGTATCTAGGA+TGG | 0.526622 | 3.4:+78065868 | MS.gene044350:CDS |
| GTCGAGGTCGCCGGCGCGGG+AGG | 0.526895 | 3.4:-78063116 | None:intergenic |
| CTAGAATAACTTTATGGCAG+CGG | 0.541146 | 3.4:-78065961 | None:intergenic |
| CAACAACCATAAGCATCTCT+AGG | 0.542190 | 3.4:-78067908 | None:intergenic |
| GGTGATGCCATTTCTAGGTG+TGG | 0.543342 | 3.4:-78066867 | None:intergenic |
| GAACTCTGCAACGGATTCAA+AGG | 0.544374 | 3.4:-78063367 | None:intergenic |
| ATTTATTTCCTGCAAACGAT+CGG | 0.548048 | 3.4:-78066680 | None:intergenic |
| TCCACCGGAATGCGAATTGG+CGG | 0.548080 | 3.4:-78063416 | None:intergenic |
| CACCTGAAGAGCTTTGCCAT+TGG | 0.550101 | 3.4:+78066886 | MS.gene044350:CDS |
| CCACCGGAATGCGAATTGGC+GGG | 0.551808 | 3.4:-78063415 | None:intergenic |
| GAAGGTAACGGAGACGGTCG+AGG | 0.554738 | 3.4:-78063132 | None:intergenic |
| TGTATAAGGCTACAAAGTGC+AGG | 0.556046 | 3.4:-78065557 | None:intergenic |
| GAAGACCCATTGAAGCTCAC+AGG | 0.556477 | 3.4:+78065435 | MS.gene044350:CDS |
| ATAGGTATTTCATCCACTCA+AGG | 0.558796 | 3.4:+78065365 | MS.gene044350:intron |
| AGAGAGCGGTGGAGTCCCAT+TGG | 0.560808 | 3.4:-78063186 | None:intergenic |
| TATCCCTTCCTGAAGAAGAC+AGG | 0.561398 | 3.4:+78065768 | MS.gene044350:CDS |
| ACTGATGTGCCGAAATCGGA+AGG | 0.562037 | 3.4:-78063055 | None:intergenic |
| ACGAGCGGCATCGAGGTGAC+CGG | 0.567999 | 3.4:-78063224 | None:intergenic |
| CATCTGCTCTCTATAAACTA+CGG | 0.577759 | 3.4:-78068115 | None:intergenic |
| CGGTGAAGTAAGATTTGCAC+GGG | 0.578959 | 3.4:+78065520 | MS.gene044350:CDS |
| GACGGTCGAGGTCGCCGGCG+CGG | 0.580861 | 3.4:-78063120 | None:intergenic |
| GTAAAGTCAACAGCATTGCC+CGG | 0.581664 | 3.4:-78067716 | None:intergenic |
| TAGGATGGATGCCATGCAGA+TGG | 0.591367 | 3.4:+78065883 | MS.gene044350:CDS |
| TAGGTATTTCATCCACTCAA+GGG | 0.593239 | 3.4:+78065366 | MS.gene044350:intron |
| AATTTGAAAGGGCAGTCAGA+AGG | 0.595225 | 3.4:-78065814 | None:intergenic |
| ACCAGGAAACTGAAATCCAC+CGG | 0.595513 | 3.4:-78063431 | None:intergenic |
| AAGCCTGTCTTCTTCAGGAA+GGG | 0.600256 | 3.4:-78065771 | None:intergenic |
| AGTCAGAAGGATTCTACGCA+AGG | 0.604259 | 3.4:-78065801 | None:intergenic |
| ACAGGGTCATATTAAGTGCA+AGG | 0.612478 | 3.4:+78065453 | MS.gene044350:CDS |
| AAGACCCATTGAAGCTCACA+GGG | 0.615492 | 3.4:+78065436 | MS.gene044350:CDS |
| GAAGCCTGTCTTCTTCAGGA+AGG | 0.615749 | 3.4:-78065772 | None:intergenic |
| ATATAGACAATTCTCAAAAG+CGG | 0.616785 | 3.4:+78065729 | MS.gene044350:CDS |
| CTCCGTTACCTTCTTGAATG+CGG | 0.621540 | 3.4:+78063142 | MS.gene044350:CDS |
| CGAAGAGATGAGTCTCCAGA+TGG | 0.622590 | 3.4:-78067744 | None:intergenic |
| TAGAGGTTTAGCCATCTGCA+TGG | 0.622841 | 3.4:-78065894 | None:intergenic |
| ATCTCTCTCGTCAAGCTCAG+CGG | 0.623099 | 3.4:-78067859 | None:intergenic |
| CGTGTTCTTCAAGACAAGGA+AGG | 0.623560 | 3.4:-78066066 | None:intergenic |
| ATTCAAGAAGGTAACGGAGA+CGG | 0.624043 | 3.4:-78063138 | None:intergenic |
| GATGTTTCCTCTTAAGCGTG+CGG | 0.625855 | 3.4:+78066827 | MS.gene044350:CDS |
| GTTTCCTCTTAAGCGTGCGG+TGG | 0.625968 | 3.4:+78066830 | MS.gene044350:CDS |
| TGCAACGGATTCAAAGGAGG+AGG | 0.631815 | 3.4:-78063361 | None:intergenic |
| CTCTGCAACGGATTCAAAGG+AGG | 0.633098 | 3.4:-78063364 | None:intergenic |
| AGAGATGAGTCTCCAGATGG+TGG | 0.634349 | 3.4:-78067741 | None:intergenic |
| ACAAGCGTAGTAGAGAGCGG+TGG | 0.635729 | 3.4:-78063197 | None:intergenic |
| GTATGAAGGATTTCCATGAA+GGG | 0.635765 | 3.4:+78066020 | MS.gene044350:CDS |
| TGAAGAACACGACATGAGTG+TGG | 0.636750 | 3.4:+78066078 | MS.gene044350:CDS |
| GATGAGTCTCCAGATGGTGG+CGG | 0.638331 | 3.4:-78067738 | None:intergenic |
| GTGATTGGAGAGAAAGTCAA+GGG | 0.639852 | 3.4:-78067987 | None:intergenic |
| TCATTATTTAGGGAAGACCC+AGG | 0.639945 | 3.4:-78067786 | None:intergenic |
| CGCCGCATTCAAGAAGGTAA+CGG | 0.641866 | 3.4:-78063144 | None:intergenic |
| GTTGGAACTGAACCCTTGAG+TGG | 0.645789 | 3.4:-78065378 | None:intergenic |
| GAGACTGATTGGAAAGAGCG+CGG | 0.646559 | 3.4:+78065500 | MS.gene044350:CDS |
| AGACAGATTAGAGATTGCTG+TGG | 0.649010 | 3.4:+78065592 | MS.gene044350:CDS |
| GGTGATTGGAGAGAAAGTCA+AGG | 0.656518 | 3.4:-78067988 | None:intergenic |
| ATGTCGTGTTCTTCAAGACA+AGG | 0.664235 | 3.4:-78066070 | None:intergenic |
| CTGATGTGCCGAAATCGGAA+GGG | 0.674283 | 3.4:-78063054 | None:intergenic |
| TCACGAAGAGAACTCTGCAA+CGG | 0.676952 | 3.4:-78063376 | None:intergenic |
| TGTCTGCTAGCATTAACCAA+TGG | 0.682080 | 3.4:-78066902 | None:intergenic |
| ATGAGTTTCATCGACGACGG+CGG | 0.684567 | 3.4:+78063019 | MS.gene044350:CDS |
| AGGATGAGTTTCATCGACGA+CGG | 0.689914 | 3.4:+78063016 | None:intergenic |
| GCGGTGAAGTAAGATTTGCA+CGG | 0.696641 | 3.4:+78065519 | MS.gene044350:CDS |
| GAGACAAGCGTAGTAGAGAG+CGG | 0.707889 | 3.4:-78063200 | None:intergenic |
| TAAGAGCAGAGTAATGACAC+CGG | 0.716123 | 3.4:-78063297 | None:intergenic |
| GAAGCATACGAGCGGCATCG+AGG | 0.723315 | 3.4:-78063231 | None:intergenic |
| ATAAAGTTATTCTAGCATCG+AGG | 0.746606 | 3.4:+78065969 | MS.gene044350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATACAACATTATTATT+TGG | - | chr3.4:78065311-78065330 | None:intergenic | 10.0% |
| !! | ATTATTAAAAGATATTTGAT+AGG | + | chr3.4:78064342-78064361 | MS.gene044350:intron | 10.0% |
| !! | GAATGAAAAAAAAAAAAAAA+AGG | + | chr3.4:78067231-78067250 | MS.gene044350:intron | 10.0% |
| !! | GTATTATTATTCTATAAATT+TGG | + | chr3.4:78066243-78066262 | MS.gene044350:intron | 10.0% |
| !!! | AATTTTGAAATTGAAAATAT+CGG | + | chr3.4:78066153-78066172 | MS.gene044350:intron | 10.0% |
| !!! | TTTATTTTATTATAGTATTC+AGG | - | chr3.4:78064535-78064554 | None:intergenic | 10.0% |
| !!! | TTTCAAAATATTTTTTAAAC+AGG | + | chr3.4:78066770-78066789 | MS.gene044350:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTTGATTT+AGG | + | chr3.4:78063533-78063552 | MS.gene044350:intron | 10.0% |
| !! | AAAAGTTCAATACTATAATA+AGG | - | chr3.4:78065071-78065090 | None:intergenic | 15.0% |
| !! | AAAGTTCAATACTATAATAA+GGG | - | chr3.4:78065070-78065089 | None:intergenic | 15.0% |
| !! | AAATCATTTAACTATAAATC+AGG | - | chr3.4:78066274-78066293 | None:intergenic | 15.0% |
| !! | AATAATGTTGTATTTATACA+TGG | + | chr3.4:78065314-78065333 | MS.gene044350:intron | 15.0% |
| !! | ATATTATTCATAGATGATTA+TGG | + | chr3.4:78063692-78063711 | MS.gene044350:intron | 15.0% |
| !! | TCTCAATGATAAATTAAATA+GGG | + | chr3.4:78063797-78063816 | MS.gene044350:intron | 15.0% |
| !! | TGAAAAAAAAAAAAAAAAGG+AGG | + | chr3.4:78067234-78067253 | MS.gene044350:intron | 15.0% |
| !! | TTCTCAATGATAAATTAAAT+AGG | + | chr3.4:78063796-78063815 | MS.gene044350:intron | 15.0% |
| !!! | AAATATTTCAATTTTGGTTT+AGG | - | chr3.4:78067177-78067196 | None:intergenic | 15.0% |
| !!! | ACTTTTAAAAGAAATCTTAA+TGG | - | chr3.4:78066727-78066746 | None:intergenic | 15.0% |
| !!! | ATTAAGATTTCTTTTAAAAG+TGG | + | chr3.4:78066726-78066745 | MS.gene044350:intron | 15.0% |
| !!! | ATTGGTAAATATTTCAATTT+TGG | - | chr3.4:78067183-78067202 | None:intergenic | 15.0% |
| !! | ACTTAAAATCTTTAGCAAAT+TGG | - | chr3.4:78066401-78066420 | None:intergenic | 20.0% |
| !! | AGAGAATTTAGATATATTGT+CGG | - | chr3.4:78064923-78064942 | None:intergenic | 20.0% |
| !! | ATAGAATAATAATACAGTCA+CGG | - | chr3.4:78066238-78066257 | None:intergenic | 20.0% |
| !! | ATTTCCTTGATCATTATTTA+GGG | - | chr3.4:78067799-78067818 | None:intergenic | 20.0% |
| !! | CTGAATAAAAGAAATGTATA+AGG | - | chr3.4:78065574-78065593 | None:intergenic | 20.0% |
| !! | GACAAATAATTGTTTGTAAA+GGG | + | chr3.4:78063885-78063904 | MS.gene044350:intron | 20.0% |
| !! | TAAAATAAGTGGAAATGAAA+AGG | - | chr3.4:78067037-78067056 | None:intergenic | 20.0% |
| !! | TTAAACTATGAAAAACTAGT+AGG | - | chr3.4:78064374-78064393 | None:intergenic | 20.0% |
| !! | TTATTCAATCTTTAGCAAAT+TGG | - | chr3.4:78066439-78066458 | None:intergenic | 20.0% |
| !! | TTTGAAAATCAGACAATAAA+AGG | - | chr3.4:78066757-78066776 | None:intergenic | 20.0% |
| !!! | TACTTATTAAAGGTTTTATC+TGG | + | chr3.4:78067113-78067132 | MS.gene044350:intron | 20.0% |
| !!! | TATTATAGTATTCAGGTTTT+TGG | - | chr3.4:78064528-78064547 | None:intergenic | 20.0% |
| !!! | TCAAACTTTTTCTTGAAAAA+TGG | - | chr3.4:78065482-78065501 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTTCTCCTAAAA+GGG | + | chr3.4:78064637-78064656 | MS.gene044350:intron | 20.0% |
| !!! | TTTGTTTTATTTCTCCTAAA+AGG | + | chr3.4:78064636-78064655 | MS.gene044350:intron | 20.0% |
| ! | AAAGGAAATCATTAATGCAT+GGG | + | chr3.4:78063834-78063853 | MS.gene044350:intron | 25.0% |
| ! | AACAAACATGCATAAAACTA+AGG | - | chr3.4:78066483-78066502 | None:intergenic | 25.0% |
| ! | AACCATCAAATGATAAAACA+AGG | + | chr3.4:78065189-78065208 | MS.gene044350:intron | 25.0% |
| ! | AACCTTTAATAAGTAACTAC+TGG | - | chr3.4:78067108-78067127 | None:intergenic | 25.0% |
| ! | ACCTTTAATAAGTAACTACT+GGG | - | chr3.4:78067107-78067126 | None:intergenic | 25.0% |
| ! | AGATTAAACAAGATATGATC+TGG | - | chr3.4:78067584-78067603 | None:intergenic | 25.0% |
| ! | ATATAGACAATTCTCAAAAG+CGG | + | chr3.4:78065729-78065748 | MS.gene044350:CDS | 25.0% |
| ! | CAATGATAAATTAAATAGGG+AGG | + | chr3.4:78063800-78063819 | MS.gene044350:intron | 25.0% |
| ! | CAGATTGAAAAACAAAAACT+AGG | - | chr3.4:78066351-78066370 | None:intergenic | 25.0% |
| ! | CATAAACCAATTAATCCAAA+AGG | - | chr3.4:78063472-78063491 | None:intergenic | 25.0% |
| ! | CCTTAATATACTTCTAACAA+TGG | - | chr3.4:78067543-78067562 | None:intergenic | 25.0% |
| ! | GAGAATTTAGATATATTGTC+GGG | - | chr3.4:78064922-78064941 | None:intergenic | 25.0% |
| ! | GATTTCCTTGATCATTATTT+AGG | - | chr3.4:78067800-78067819 | None:intergenic | 25.0% |
| ! | GGACAAATAATTGTTTGTAA+AGG | + | chr3.4:78063884-78063903 | MS.gene044350:intron | 25.0% |
| ! | GGCAAATAATTCAAAATTAC+AGG | - | chr3.4:78067682-78067701 | None:intergenic | 25.0% |
| ! | TAATTCAAAATTACAGGCAA+TGG | - | chr3.4:78067676-78067695 | None:intergenic | 25.0% |
| ! | TAGAATAATAATACAGTCAC+GGG | - | chr3.4:78066237-78066256 | None:intergenic | 25.0% |
| ! | TCTAATATTCTTACACAACA+AGG | + | chr3.4:78065146-78065165 | MS.gene044350:intron | 25.0% |
| ! | TTATTCATAGATGATTATGG+AGG | + | chr3.4:78063695-78063714 | MS.gene044350:intron | 25.0% |
| ! | TTGAAATTGAAAATATCGGA+GGG | + | chr3.4:78066157-78066176 | MS.gene044350:intron | 25.0% |
| ! | TTTATCCTGTATTTCTTTGT+TGG | + | chr3.4:78066647-78066666 | MS.gene044350:intron | 25.0% |
| !! | AAGAATTTGATTCTACCTTT+TGG | + | chr3.4:78063454-78063473 | MS.gene044350:intron | 25.0% |
| !! | AATGCACATTTTCATAACTT+AGG | - | chr3.4:78063663-78063682 | None:intergenic | 25.0% |
| !! | ATTCTACCTTTTGGATTAAT+TGG | + | chr3.4:78063463-78063482 | MS.gene044350:intron | 25.0% |
| !! | ATTGGTTTATGAGAATGTTA+AGG | + | chr3.4:78063481-78063500 | MS.gene044350:intron | 25.0% |
| !! | CCATTGTTAGAAGTATATTA+AGG | + | chr3.4:78067540-78067559 | MS.gene044350:intron | 25.0% |
| !! | TAAATAGGGAGGATTTTATA+AGG | + | chr3.4:78063811-78063830 | MS.gene044350:intron | 25.0% |
| !! | TGTAAAGGGTCTTATATTTA+CGG | + | chr3.4:78063863-78063882 | MS.gene044350:intron | 25.0% |
| !! | TTACATAAGATGATTTGCAA+TGG | + | chr3.4:78066313-78066332 | MS.gene044350:intron | 25.0% |
| !! | TTAGAAGCTCACTTTAATTT+AGG | + | chr3.4:78063753-78063772 | MS.gene044350:intron | 25.0% |
| !! | TTGATGATTTACGTGATAAA+TGG | + | chr3.4:78067823-78067842 | MS.gene044350:CDS | 25.0% |
| !! | TTTGAAATTGAAAATATCGG+AGG | + | chr3.4:78066156-78066175 | MS.gene044350:intron | 25.0% |
| !!! | AATATTTTTTAAACAGGCTG+AGG | + | chr3.4:78066776-78066795 | MS.gene044350:intron | 25.0% |
| !!! | AGATAATGGAATTGATGAAT+TGG | + | chr3.4:78065856-78065875 | MS.gene044350:CDS | 25.0% |
| !!! | CTAGTTTTTGTTTTTCAATC+TGG | + | chr3.4:78066349-78066368 | MS.gene044350:intron | 25.0% |
| !!! | TATTAAAGGTTTTATCTGGA+TGG | + | chr3.4:78067117-78067136 | MS.gene044350:intron | 25.0% |
| AAAAACCCACCAAAACAATA+TGG | + | chr3.4:78064453-78064472 | MS.gene044350:intron | 30.0% | |
| AAACAGTGTTCAGAAATCTA+CGG | - | chr3.4:78068062-78068081 | None:intergenic | 30.0% | |
| AGCATTAGATATCTGATATC+AGG | - | chr3.4:78064883-78064902 | None:intergenic | 30.0% | |
| ATAAAGTTATTCTAGCATCG+AGG | + | chr3.4:78065969-78065988 | MS.gene044350:CDS | 30.0% | |
| ATAACAACACAAATATGACC+TGG | - | chr3.4:78066512-78066531 | None:intergenic | 30.0% | |
| ATAATTCATCTTTCCCTTCA+TGG | - | chr3.4:78066036-78066055 | None:intergenic | 30.0% | |
| ATGCATAAAACTAAGGCAAT+TGG | - | chr3.4:78066476-78066495 | None:intergenic | 30.0% | |
| ATTTATTTCCTGCAAACGAT+CGG | - | chr3.4:78066683-78066702 | None:intergenic | 30.0% | |
| ATTTCAAAATTCCACAGTGA+AGG | - | chr3.4:78066144-78066163 | None:intergenic | 30.0% | |
| CATAAAACAATGAATCGAGT+AGG | + | chr3.4:78065116-78065135 | MS.gene044350:intron | 30.0% | |
| CCTTTAATAAGTAACTACTG+GGG | - | chr3.4:78067106-78067125 | None:intergenic | 30.0% | |
| CTCATAAGTGGAATTTGAAA+GGG | - | chr3.4:78065828-78065847 | None:intergenic | 30.0% | |
| CTCTAGTAAGTAGTAACATA+GGG | - | chr3.4:78067065-78067084 | None:intergenic | 30.0% | |
| CTTTCTTCATCTTACATTGA+TGG | + | chr3.4:78066951-78066970 | MS.gene044350:intron | 30.0% | |
| GAAAGGAAATCATTAATGCA+TGG | + | chr3.4:78063833-78063852 | MS.gene044350:intron | 30.0% | |
| GAATTGATGAATTGGTATCT+AGG | + | chr3.4:78065864-78065883 | MS.gene044350:CDS | 30.0% | |
| GCATCTTAATTGTAGATCAT+TGG | - | chr3.4:78067201-78067220 | None:intergenic | 30.0% | |
| GTTGTATTTATACATGGTCT+GGG | + | chr3.4:78065320-78065339 | MS.gene044350:intron | 30.0% | |
| TAAGATGAAGAAAGAGAGAT+TGG | - | chr3.4:78066945-78066964 | None:intergenic | 30.0% | |
| TAAGTTACCGTGGTAATTAT+TGG | - | chr3.4:78066193-78066212 | None:intergenic | 30.0% | |
| TAGTATGCCAATAATTACCA+CGG | + | chr3.4:78066183-78066202 | MS.gene044350:intron | 30.0% | |
| TATGAGAATGGTCAAGATAA+TGG | + | chr3.4:78065842-78065861 | MS.gene044350:CDS | 30.0% | |
| TATTTGTTCATTTCCAGGTA+TGG | + | chr3.4:78067618-78067637 | MS.gene044350:intron | 30.0% | |
| TCAAATTCCACTTATGAGAA+TGG | + | chr3.4:78065830-78065849 | MS.gene044350:CDS | 30.0% | |
| TCGATGCTAGAATAACTTTA+TGG | - | chr3.4:78065970-78065989 | None:intergenic | 30.0% | |
| TCTCATAAGTGGAATTTGAA+AGG | - | chr3.4:78065829-78065848 | None:intergenic | 30.0% | |
| TCTTCCCTAAATAATGATCA+AGG | + | chr3.4:78067792-78067811 | MS.gene044350:CDS | 30.0% | |
| TGAGAATTGAAATGACTGAT+TGG | + | chr3.4:78063994-78064013 | MS.gene044350:intron | 30.0% | |
| TGTTGTATTTATACATGGTC+TGG | + | chr3.4:78065319-78065338 | MS.gene044350:intron | 30.0% | |
| TTCTTACACAACAAGGAATT+AGG | + | chr3.4:78065153-78065172 | MS.gene044350:intron | 30.0% | |
| TTGACTATTTGTTCATTTCC+AGG | + | chr3.4:78067613-78067632 | MS.gene044350:intron | 30.0% | |
| TTTATGAGAATGTTAAGGTG+TGG | + | chr3.4:78063486-78063505 | MS.gene044350:intron | 30.0% | |
| ! | AGAAAAAGTTTGAGACTGAT+TGG | + | chr3.4:78065489-78065508 | MS.gene044350:CDS | 30.0% |
| ! | ATAGGGATGTCTAAAATAAG+TGG | - | chr3.4:78067048-78067067 | None:intergenic | 30.0% |
| ! | CATAAGTTTAGCTTCATAGT+TGG | + | chr3.4:78064180-78064199 | MS.gene044350:intron | 30.0% |
| ! | TGTAAAGGGTCTTATGATTA+GGG | + | chr3.4:78063899-78063918 | MS.gene044350:intron | 30.0% |
| ! | TTACTCTGCTCTTAATTTGA+AGG | + | chr3.4:78063306-78063325 | MS.gene044350:CDS | 30.0% |
| ! | TTGTAAAGGGTCTTATGATT+AGG | + | chr3.4:78063898-78063917 | MS.gene044350:intron | 30.0% |
| !! | GTGGAAGCTTTTTCTAATTA+AGG | + | chr3.4:78063505-78063524 | MS.gene044350:intron | 30.0% |
| !!! | AGCCTTGTTTTATCATTTGA+TGG | - | chr3.4:78065194-78065213 | None:intergenic | 30.0% |
| !!! | CAAAAGCGGTTTATTTTACA+GGG | + | chr3.4:78065743-78065762 | MS.gene044350:CDS | 30.0% |
| !!! | GATTTCTGAACACTGTTTTT+TGG | + | chr3.4:78068064-78068083 | MS.gene044350:intron | 30.0% |
| !!! | TCAAAAGCGGTTTATTTTAC+AGG | + | chr3.4:78065742-78065761 | MS.gene044350:CDS | 30.0% |
| AAATGACCTTAGGGTTATGT+TGG | + | chr3.4:78067365-78067384 | MS.gene044350:intron | 35.0% | |
| AAGATGATCTTAAGTTACCG+TGG | - | chr3.4:78066203-78066222 | None:intergenic | 35.0% | |
| AATCTTCAAAACACCATACC+TGG | - | chr3.4:78067634-78067653 | None:intergenic | 35.0% | |
| ACAAAAACTGAAACTCTCGT+AGG | - | chr3.4:78063622-78063641 | None:intergenic | 35.0% | |
| ACATCAGCAAGATCATTTAG+AGG | - | chr3.4:78065914-78065933 | None:intergenic | 35.0% | |
| ATAGGTATTTCATCCACTCA+AGG | + | chr3.4:78065365-78065384 | MS.gene044350:intron | 35.0% | |
| ATCTTGACCATTCTCATAAG+TGG | - | chr3.4:78065840-78065859 | None:intergenic | 35.0% | |
| ATGGTTGCTGAAATGTATTC+TGG | + | chr3.4:78067136-78067155 | MS.gene044350:intron | 35.0% | |
| CAACAGTCTGTGTAACATTT+AGG | - | chr3.4:78064032-78064051 | None:intergenic | 35.0% | |
| CACCAAAACAATATGGTAGA+CGG | + | chr3.4:78064460-78064479 | MS.gene044350:intron | 35.0% | |
| CATCTGCTCTCTATAAACTA+CGG | - | chr3.4:78068118-78068137 | None:intergenic | 35.0% | |
| CCCCAGTAGTTACTTATTAA+AGG | + | chr3.4:78067103-78067122 | MS.gene044350:intron | 35.0% | |
| CCCTTAAAAAAAGTCCCAAA+CGG | + | chr3.4:78063079-78063098 | MS.gene044350:CDS | 35.0% | |
| CTAGAATAACTTTATGGCAG+CGG | - | chr3.4:78065964-78065983 | None:intergenic | 35.0% | |
| CTGAACCAACAAAGAAATAC+AGG | - | chr3.4:78066655-78066674 | None:intergenic | 35.0% | |
| GAACATCACAAGGGATAAAA+GGG | + | chr3.4:78064822-78064841 | MS.gene044350:intron | 35.0% | |
| GCTCTAGTAAGTAGTAACAT+AGG | - | chr3.4:78067066-78067085 | None:intergenic | 35.0% | |
| GGATGTATAAAAACCTGATC+TGG | - | chr3.4:78066706-78066725 | None:intergenic | 35.0% | |
| GGTAGAATCAAATTCTTACC+AGG | - | chr3.4:78063451-78063470 | None:intergenic | 35.0% | |
| GTACAGTAAAAACCACATCT+GGG | - | chr3.4:78065412-78065431 | None:intergenic | 35.0% | |
| GTATGAAGGATTTCCATGAA+GGG | + | chr3.4:78066020-78066039 | MS.gene044350:CDS | 35.0% | |
| TACAGTAAAAACCACATCTG+GGG | - | chr3.4:78065411-78065430 | None:intergenic | 35.0% | |
| TAGGTATTTCATCCACTCAA+GGG | + | chr3.4:78065366-78065385 | MS.gene044350:intron | 35.0% | |
| TCTCATAAACTTCAAGCAGA+AGG | - | chr3.4:78066569-78066588 | None:intergenic | 35.0% | |
| TCTCCTTAATTCATCTACCA+CGG | + | chr3.4:78067338-78067357 | MS.gene044350:intron | 35.0% | |
| TGATATCAGGTTCCTATTTG+AGG | - | chr3.4:78064870-78064889 | None:intergenic | 35.0% | |
| TGATGAATTGGTATCTAGGA+TGG | + | chr3.4:78065868-78065887 | MS.gene044350:CDS | 35.0% | |
| TGGGAGTTTCATTCCTAATT+AGG | - | chr3.4:78064777-78064796 | None:intergenic | 35.0% | |
| TGTACAGTAAAAACCACATC+TGG | - | chr3.4:78065413-78065432 | None:intergenic | 35.0% | |
| TTGAAGGAGGATACAATGAA+GGG | + | chr3.4:78063939-78063958 | MS.gene044350:intron | 35.0% | |
| TTGACCAACATTAGTGATCT+AGG | - | chr3.4:78064691-78064710 | None:intergenic | 35.0% | |
| TTGCCGATACAAAAGAATTC+CGG | + | chr3.4:78067697-78067716 | MS.gene044350:CDS | 35.0% | |
| TTTAGCAAATTGGTTGCGTT+TGG | - | chr3.4:78066391-78066410 | None:intergenic | 35.0% | |
| ! | AGGGAGGATTTTATAAGGAA+AGG | + | chr3.4:78063816-78063835 | MS.gene044350:intron | 35.0% |
| ! | ATATCGTCTCACTAGGTTTT+GGG | + | chr3.4:78064608-78064627 | MS.gene044350:intron | 35.0% |
| ! | ATGCATGGGACATTTTGTAA+AGG | + | chr3.4:78063848-78063867 | MS.gene044350:intron | 35.0% |
| ! | ATGTTTTCAACGACAGAATG+CGG | + | chr3.4:78064414-78064433 | MS.gene044350:intron | 35.0% |
| ! | CTGCTCTTAATTTGAAGGTT+AGG | + | chr3.4:78063311-78063330 | MS.gene044350:CDS | 35.0% |
| ! | GATGTGGTTTTTACTGTACA+AGG | + | chr3.4:78065413-78065432 | MS.gene044350:CDS | 35.0% |
| ! | TGCATGGGACATTTTGTAAA+GGG | + | chr3.4:78063849-78063868 | MS.gene044350:intron | 35.0% |
| !! | CTGTATTTCTTTGTTGGTTC+AGG | + | chr3.4:78066653-78066672 | MS.gene044350:intron | 35.0% |
| !!! | CCGTTTGGGACTTTTTTTAA+GGG | - | chr3.4:78063082-78063101 | None:intergenic | 35.0% |
| !!! | CGTTTGGGACTTTTTTTAAG+GGG | - | chr3.4:78063081-78063100 | None:intergenic | 35.0% |
| !!! | GGTATGGTGTTTTGAAGATT+CGG | + | chr3.4:78067634-78067653 | MS.gene044350:intron | 35.0% |
| !!! | GTATGGTGTTTTGAAGATTC+GGG | + | chr3.4:78067635-78067654 | MS.gene044350:CDS | 35.0% |
| !!! | GTCTACCATATTGTTTTGGT+GGG | - | chr3.4:78064461-78064480 | None:intergenic | 35.0% |
| !!! | TGCATGTTTGTTTTTGTACC+AGG | + | chr3.4:78066491-78066510 | MS.gene044350:intron | 35.0% |
| AAGGAAAGGATATGGGTATG+AGG | + | chr3.4:78064800-78064819 | MS.gene044350:intron | 40.0% | |
| AATATGGCTGGTGCCTAATT+AGG | + | chr3.4:78064761-78064780 | MS.gene044350:intron | 40.0% | |
| AATTAGGCACCAGCCATATT+TGG | - | chr3.4:78064761-78064780 | None:intergenic | 40.0% | |
| AATTTGAAAGGGCAGTCAGA+AGG | - | chr3.4:78065817-78065836 | None:intergenic | 40.0% | |
| ACAGGGTCATATTAAGTGCA+AGG | + | chr3.4:78065453-78065472 | MS.gene044350:CDS | 40.0% | |
| ACAGTAAAAACCACATCTGG+GGG | - | chr3.4:78065410-78065429 | None:intergenic | 40.0% | |
| AGACAGATTAGAGATTGCTG+TGG | + | chr3.4:78065592-78065611 | MS.gene044350:CDS | 40.0% | |
| AGAGATTGCTGTGGATGATA+TGG | + | chr3.4:78065601-78065620 | MS.gene044350:CDS | 40.0% | |
| AGGAATGAAACTCCCAGAAA+AGG | + | chr3.4:78064781-78064800 | MS.gene044350:intron | 40.0% | |
| ATGTCGTGTTCTTCAAGACA+AGG | - | chr3.4:78066073-78066092 | None:intergenic | 40.0% | |
| ATGTTACACAGACTGTTGCT+AGG | + | chr3.4:78064034-78064053 | MS.gene044350:intron | 40.0% | |
| CAACAACCATAAGCATCTCT+AGG | - | chr3.4:78067911-78067930 | None:intergenic | 40.0% | |
| CATATGTAATTCACCACGAC+AGG | - | chr3.4:78067457-78067476 | None:intergenic | 40.0% | |
| CCCAGAAAAGGAAAGGATAT+GGG | + | chr3.4:78064793-78064812 | MS.gene044350:intron | 40.0% | |
| CGTATGAAGGATTTCCATGA+AGG | + | chr3.4:78066019-78066038 | MS.gene044350:CDS | 40.0% | |
| CTCTCCTAGATCACTAATGT+TGG | + | chr3.4:78064684-78064703 | MS.gene044350:intron | 40.0% | |
| GAGAGAGCTTATGAGAAAGT+TGG | + | chr3.4:78063726-78063745 | MS.gene044350:intron | 40.0% | |
| GCAGGAAATAAATCCAGATC+AGG | + | chr3.4:78066690-78066709 | MS.gene044350:CDS | 40.0% | |
| GGAACATCACAAGGGATAAA+AGG | + | chr3.4:78064821-78064840 | MS.gene044350:intron | 40.0% | |
| GGCGAACAAACTGTAATTTC+AGG | + | chr3.4:78068023-78068042 | MS.gene044350:intron | 40.0% | |
| GTACTGTTTGTGCAATGGTA+AGG | + | chr3.4:78064270-78064289 | MS.gene044350:intron | 40.0% | |
| GTCTTATGATTAGGGATGGA+GGG | + | chr3.4:78063907-78063926 | MS.gene044350:intron | 40.0% | |
| GTGATTGGAGAGAAAGTCAA+GGG | - | chr3.4:78067990-78068009 | None:intergenic | 40.0% | |
| GTTGAAGGAGGATACAATGA+AGG | + | chr3.4:78063938-78063957 | MS.gene044350:intron | 40.0% | |
| GTTGTGTTAATGTGTCGTGT+CGG | - | chr3.4:78064092-78064111 | None:intergenic | 40.0% | |
| TAACAAATCGAAGTTGCACC+AGG | + | chr3.4:78064582-78064601 | MS.gene044350:intron | 40.0% | |
| TAAGAGCAGAGTAATGACAC+CGG | - | chr3.4:78063300-78063319 | None:intergenic | 40.0% | |
| TAAGTCTCTTTCCTTCACTG+TGG | + | chr3.4:78066130-78066149 | MS.gene044350:intron | 40.0% | |
| TATCAGGTTCCTATTTGAGG+TGG | - | chr3.4:78064867-78064886 | None:intergenic | 40.0% | |
| TCATTATTTAGGGAAGACCC+AGG | - | chr3.4:78067789-78067808 | None:intergenic | 40.0% | |
| TCCCAGAAAAGGAAAGGATA+TGG | + | chr3.4:78064792-78064811 | MS.gene044350:intron | 40.0% | |
| TGAAACTCCCAGAAAAGGAA+AGG | + | chr3.4:78064786-78064805 | MS.gene044350:intron | 40.0% | |
| TGCCGATACAAAAGAATTCC+GGG | + | chr3.4:78067698-78067717 | MS.gene044350:CDS | 40.0% | |
| TGTATAAGGCTACAAAGTGC+AGG | - | chr3.4:78065560-78065579 | None:intergenic | 40.0% | |
| TGTCTGCTAGCATTAACCAA+TGG | - | chr3.4:78066905-78066924 | None:intergenic | 40.0% | |
| TGTTACACAGACTGTTGCTA+GGG | + | chr3.4:78064035-78064054 | MS.gene044350:intron | 40.0% | |
| TTCAAAAACTACAGCAGCGT+CGG | + | chr3.4:78064157-78064176 | MS.gene044350:intron | 40.0% | |
| TTGCTTCATTGCTTAAGTGG+AGG | + | chr3.4:78064661-78064680 | MS.gene044350:intron | 40.0% | |
| TTGTTCGCCTGAAATTACAG+CGG | - | chr3.4:78068012-78068031 | None:intergenic | 40.0% | |
| ! | AAGGGATAAAAGGGTTTGCT+TGG | + | chr3.4:78064831-78064850 | MS.gene044350:intron | 40.0% |
| ! | AAGGGTCTTATGATTAGGGA+TGG | + | chr3.4:78063903-78063922 | MS.gene044350:intron | 40.0% |
| ! | ACCCATATCCTTTCCTTTTC+TGG | - | chr3.4:78064797-78064816 | None:intergenic | 40.0% |
| ! | AGGGATAAAAGGGTTTGCTT+GGG | + | chr3.4:78064832-78064851 | MS.gene044350:intron | 40.0% |
| ! | CATATCGTCTCACTAGGTTT+TGG | + | chr3.4:78064607-78064626 | MS.gene044350:intron | 40.0% |
| ! | CCCATATCCTTTCCTTTTCT+GGG | - | chr3.4:78064796-78064815 | None:intergenic | 40.0% |
| ! | GCAATGAAGCAAACCCTTTT+AGG | - | chr3.4:78064653-78064672 | None:intergenic | 40.0% |
| ! | GCAGTCTATGATGAAAGCAT+TGG | + | chr3.4:78064487-78064506 | MS.gene044350:intron | 40.0% |
| ! | GGTTTGCTTCATTGCTTAAG+TGG | + | chr3.4:78064658-78064677 | MS.gene044350:intron | 40.0% |
| ! | TGCCCGGAATTCTTTTGTAT+CGG | - | chr3.4:78067703-78067722 | None:intergenic | 40.0% |
| ! | TGCCGTCTACCATATTGTTT+TGG | - | chr3.4:78064465-78064484 | None:intergenic | 40.0% |
| !! | ATTCAAGAAGGTAACGGAGA+CGG | - | chr3.4:78063141-78063160 | None:intergenic | 40.0% |
| !! | CGCTGCTGTAGTTTTTGAAA+TGG | - | chr3.4:78064156-78064175 | None:intergenic | 40.0% |
| !!! | CGTCTACCATATTGTTTTGG+TGG | - | chr3.4:78064462-78064481 | None:intergenic | 40.0% |
| !!! | GCCGTTTGGGACTTTTTTTA+AGG | - | chr3.4:78063083-78063102 | None:intergenic | 40.0% |
| AAAACAAGACATGAGGGGTG+GGG | + | chr3.4:78064248-78064267 | MS.gene044350:intron | 45.0% | |
| AAAGACATTGTCCTCCAAGC+AGG | - | chr3.4:78064221-78064240 | None:intergenic | 45.0% | |
| AAATCCACCGGAATGCGAAT+TGG | - | chr3.4:78063422-78063441 | None:intergenic | 45.0% | |
| AACCAATGGCAAAGCTCTTC+AGG | - | chr3.4:78066891-78066910 | None:intergenic | 45.0% | |
| AAGACATTGTCCTCCAAGCA+GGG | - | chr3.4:78064220-78064239 | None:intergenic | 45.0% | |
| AAGACCCATTGAAGCTCACA+GGG | + | chr3.4:78065436-78065455 | MS.gene044350:CDS | 45.0% | |
| AAGCCTGTCTTCTTCAGGAA+GGG | - | chr3.4:78065774-78065793 | None:intergenic | 45.0% | |
| AAGGGCTTAGTTGTTGTCAG+TGG | + | chr3.4:78063957-78063976 | MS.gene044350:intron | 45.0% | |
| ACACACACACATGTGAGATG+GGG | + | chr3.4:78065256-78065275 | MS.gene044350:intron | 45.0% | |
| ACCAGGAAACTGAAATCCAC+CGG | - | chr3.4:78063434-78063453 | None:intergenic | 45.0% | |
| AGCAAGACTCTCACGTATGA+AGG | + | chr3.4:78066006-78066025 | MS.gene044350:CDS | 45.0% | |
| AGGGTGTAGAAAGTTGAAGG+AGG | + | chr3.4:78063926-78063945 | MS.gene044350:intron | 45.0% | |
| AGTCAGAAGGATTCTACGCA+AGG | - | chr3.4:78065804-78065823 | None:intergenic | 45.0% | |
| ATGACCCTGTGAGCTTCAAT+GGG | - | chr3.4:78065443-78065462 | None:intergenic | 45.0% | |
| CAAAACAAGACATGAGGGGT+GGG | + | chr3.4:78064247-78064266 | MS.gene044350:intron | 45.0% | |
| CACACACACACATGTGAGAT+GGG | + | chr3.4:78065255-78065274 | MS.gene044350:intron | 45.0% | |
| CACGGCTCAAAATGACCTTA+GGG | + | chr3.4:78067356-78067375 | MS.gene044350:intron | 45.0% | |
| CCAATCACCGCTGTAATTTC+AGG | + | chr3.4:78068002-78068021 | MS.gene044350:intron | 45.0% | |
| CCTCTTCCAACATAACCCTA+AGG | - | chr3.4:78067374-78067393 | None:intergenic | 45.0% | |
| CCTGAAATTACAGCGGTGAT+TGG | - | chr3.4:78068005-78068024 | None:intergenic | 45.0% | |
| CCTGCAAAACAAGACATGAG+GGG | + | chr3.4:78064243-78064262 | MS.gene044350:intron | 45.0% | |
| CCTTAGGGTTATGTTGGAAG+AGG | + | chr3.4:78067371-78067390 | MS.gene044350:intron | 45.0% | |
| CGGTGAAGTAAGATTTGCAC+GGG | + | chr3.4:78065520-78065539 | MS.gene044350:CDS | 45.0% | |
| CGTGTTCTTCAAGACAAGGA+AGG | - | chr3.4:78066069-78066088 | None:intergenic | 45.0% | |
| CTCCGTTACCTTCTTGAATG+CGG | + | chr3.4:78063142-78063161 | MS.gene044350:CDS | 45.0% | |
| GACTTAGACCCTTCCGATTT+CGG | + | chr3.4:78063046-78063065 | MS.gene044350:CDS | 45.0% | |
| GAGCCGTGGTAGATGAATTA+AGG | - | chr3.4:78067344-78067363 | None:intergenic | 45.0% | |
| GATGTTTCCTCTTAAGCGTG+CGG | + | chr3.4:78066827-78066846 | MS.gene044350:CDS | 45.0% | |
| GCAGAGCATGAAAAGTCATC+AGG | + | chr3.4:78067930-78067949 | MS.gene044350:CDS | 45.0% | |
| GCCTGCAAAACAAGACATGA+GGG | + | chr3.4:78064242-78064261 | MS.gene044350:intron | 45.0% | |
| GCGGTGAAGTAAGATTTGCA+CGG | + | chr3.4:78065519-78065538 | MS.gene044350:CDS | 45.0% | |
| GCTCGTATGCTTCTCGAAAA+CGG | + | chr3.4:78063241-78063260 | MS.gene044350:CDS | 45.0% | |
| GGCTACAATACTCAGCAGTT+AGG | - | chr3.4:78067436-78067455 | None:intergenic | 45.0% | |
| GGGTATGAGGAACATCACAA+GGG | + | chr3.4:78064813-78064832 | MS.gene044350:intron | 45.0% | |
| GGTGATTGGAGAGAAAGTCA+AGG | - | chr3.4:78067991-78068010 | None:intergenic | 45.0% | |
| GTAAAGTCAACAGCATTGCC+CGG | - | chr3.4:78067719-78067738 | None:intergenic | 45.0% | |
| TACTCAGCAGTTAGGCAGTT+AGG | - | chr3.4:78067428-78067447 | None:intergenic | 45.0% | |
| TAGAGGTTTAGCCATCTGCA+TGG | - | chr3.4:78065897-78065916 | None:intergenic | 45.0% | |
| TATCCCTTCCTGAAGAAGAC+AGG | + | chr3.4:78065768-78065787 | MS.gene044350:CDS | 45.0% | |
| TATGACCCTGTGAGCTTCAA+TGG | - | chr3.4:78065444-78065463 | None:intergenic | 45.0% | |
| TCACACACACACATGTGAGA+TGG | + | chr3.4:78065254-78065273 | MS.gene044350:intron | 45.0% | |
| TCACGAAGAGAACTCTGCAA+CGG | - | chr3.4:78063379-78063398 | None:intergenic | 45.0% | |
| TGAAGAACACGACATGAGTG+TGG | + | chr3.4:78066078-78066097 | MS.gene044350:CDS | 45.0% | |
| TGCCTGCAAAACAAGACATG+AGG | + | chr3.4:78064241-78064260 | MS.gene044350:intron | 45.0% | |
| TGGGTATGAGGAACATCACA+AGG | + | chr3.4:78064812-78064831 | MS.gene044350:intron | 45.0% | |
| ! | CTTCAGGTGATGCCATTTCT+AGG | - | chr3.4:78066875-78066894 | None:intergenic | 45.0% |
| ! | GAACTCTGCAACGGATTCAA+AGG | - | chr3.4:78063370-78063389 | None:intergenic | 45.0% |
| ! | GGTCTTATGATTAGGGATGG+AGG | + | chr3.4:78063906-78063925 | MS.gene044350:intron | 45.0% |
| ! | TGGAGGGTGTAGAAAGTTGA+AGG | + | chr3.4:78063923-78063942 | MS.gene044350:intron | 45.0% |
| !! | AAGAGTGCTCCACCTCAAAT+AGG | + | chr3.4:78064855-78064874 | MS.gene044350:intron | 45.0% |
| !! | GTTTTCGAGAAGCATACGAG+CGG | - | chr3.4:78063242-78063261 | None:intergenic | 45.0% |
| !! | AATATTTATTATATTTGAAT+AGG | + | chr3.4:78065347-78065366 | MS.gene044350:intron | 5.0% |
| AACACACGTTTGACGGTGAC+CGG | + | chr3.4:78063278-78063297 | MS.gene044350:CDS | 50.0% | |
| ACTGATGTGCCGAAATCGGA+AGG | - | chr3.4:78063058-78063077 | None:intergenic | 50.0% | |
| AGACATTGTCCTCCAAGCAG+GGG | - | chr3.4:78064219-78064238 | None:intergenic | 50.0% | |
| AGAGATGAGTCTCCAGATGG+TGG | - | chr3.4:78067744-78067763 | None:intergenic | 50.0% | |
| ATCTCTCTCGTCAAGCTCAG+CGG | - | chr3.4:78067862-78067881 | None:intergenic | 50.0% | |
| ATGAGTTTCATCGACGACGG+CGG | + | chr3.4:78063019-78063038 | MS.gene044350:CDS | 50.0% | |
| CAACTACTTTCCCCCAGATG+TGG | + | chr3.4:78065397-78065416 | MS.gene044350:CDS | 50.0% | |
| CAAGCGCCTAGAGATGCTTA+TGG | + | chr3.4:78067902-78067921 | MS.gene044350:CDS | 50.0% | |
| CACATCTGGGGGAAAGTAGT+TGG | - | chr3.4:78065399-78065418 | None:intergenic | 50.0% | |
| CACCTGAAGAGCTTTGCCAT+TGG | + | chr3.4:78066886-78066905 | MS.gene044350:CDS | 50.0% | |
| CAGGCACATATCGTCTCACT+AGG | + | chr3.4:78064601-78064620 | MS.gene044350:intron | 50.0% | |
| CCACGGCTCAAAATGACCTT+AGG | + | chr3.4:78067355-78067374 | MS.gene044350:intron | 50.0% | |
| CGAAGAGATGAGTCTCCAGA+TGG | - | chr3.4:78067747-78067766 | None:intergenic | 50.0% | |
| CGCCGCATTCAAGAAGGTAA+CGG | - | chr3.4:78063147-78063166 | None:intergenic | 50.0% | |
| CGTTAACGCCGCATTCAAGA+AGG | - | chr3.4:78063153-78063172 | None:intergenic | 50.0% | |
| CTAGTGAGACGATATGTGCC+TGG | - | chr3.4:78064603-78064622 | None:intergenic | 50.0% | |
| CTGATGTGCCGAAATCGGAA+GGG | - | chr3.4:78063057-78063076 | None:intergenic | 50.0% | |
| CTTAATCTTCCCCTGCTTGG+AGG | + | chr3.4:78064207-78064226 | MS.gene044350:intron | 50.0% | |
| CTTGGAAAACGTCGCCGTTT+GGG | - | chr3.4:78063096-78063115 | None:intergenic | 50.0% | |
| GAAGACCCATTGAAGCTCAC+AGG | + | chr3.4:78065435-78065454 | MS.gene044350:CDS | 50.0% | |
| GAAGCCTGTCTTCTTCAGGA+AGG | - | chr3.4:78065775-78065794 | None:intergenic | 50.0% | |
| GAGACAAGCGTAGTAGAGAG+CGG | - | chr3.4:78063203-78063222 | None:intergenic | 50.0% | |
| GAGACTGATTGGAAAGAGCG+CGG | + | chr3.4:78065500-78065519 | MS.gene044350:CDS | 50.0% | |
| GCAAAACAAGACATGAGGGG+TGG | + | chr3.4:78064246-78064265 | MS.gene044350:intron | 50.0% | |
| GTCACCGTCAAACGTGTGTT+CGG | - | chr3.4:78063278-78063297 | None:intergenic | 50.0% | |
| GTGCTTAATCTTCCCCTGCT+TGG | + | chr3.4:78064204-78064223 | MS.gene044350:intron | 50.0% | |
| GTTGGAACTGAACCCTTGAG+TGG | - | chr3.4:78065381-78065400 | None:intergenic | 50.0% | |
| TACCACGGTCGTGCCAAATA+TGG | + | chr3.4:78064745-78064764 | MS.gene044350:intron | 50.0% | |
| TAGGATGGATGCCATGCAGA+TGG | + | chr3.4:78065883-78065902 | MS.gene044350:CDS | 50.0% | |
| TGCTCCGAACACACGTTTGA+CGG | + | chr3.4:78063271-78063290 | MS.gene044350:CDS | 50.0% | |
| TTGACTTTACCGCCACCATC+TGG | + | chr3.4:78067729-78067748 | MS.gene044350:CDS | 50.0% | |
| ! | CTCTGCAACGGATTCAAAGG+AGG | - | chr3.4:78063367-78063386 | None:intergenic | 50.0% |
| ! | CTGAGTATTGTAGCCTGTCG+TGG | + | chr3.4:78067441-78067460 | MS.gene044350:intron | 50.0% |
| ! | GGTGATGCCATTTCTAGGTG+TGG | - | chr3.4:78066870-78066889 | None:intergenic | 50.0% |
| ! | TCCGGTGGATTTCAGTTTCC+TGG | + | chr3.4:78063430-78063449 | MS.gene044350:CDS | 50.0% |
| ! | TGCAACGGATTCAAAGGAGG+AGG | - | chr3.4:78063364-78063383 | None:intergenic | 50.0% |
| ! | TGTTAATGTGTCGTGTCGGC+TGG | - | chr3.4:78064088-78064107 | None:intergenic | 50.0% |
| !! | CCTAAGGTCATTTTGAGCCG+TGG | - | chr3.4:78067358-78067377 | None:intergenic | 50.0% |
| !! | CTTGGTGCCACACCTAGAAA+TGG | + | chr3.4:78066860-78066879 | MS.gene044350:CDS | 50.0% |
| !! | GTGGGGTACTGTTTGTGCAA+TGG | + | chr3.4:78064265-78064284 | MS.gene044350:intron | 50.0% |
| !!! | CCCCTCATGTCTTGTTTTGC+AGG | - | chr3.4:78064246-78064265 | None:intergenic | 50.0% |
| !!! | CGTCTCACTAGGTTTTGGGT+GGG | + | chr3.4:78064612-78064631 | MS.gene044350:intron | 50.0% |
| !!! | TCGTCTCACTAGGTTTTGGG+TGG | + | chr3.4:78064611-78064630 | MS.gene044350:intron | 50.0% |
| ACAAGCGTAGTAGAGAGCGG+TGG | - | chr3.4:78063200-78063219 | None:intergenic | 55.0% | |
| ACGGTCGTGCCAAATATGGC+TGG | + | chr3.4:78064749-78064768 | MS.gene044350:intron | 55.0% | |
| ACGTCAACGCACGTGACCAA+TGG | + | chr3.4:78063170-78063189 | MS.gene044350:CDS | 55.0% | |
| AGCCATATTTGGCACGACCG+TGG | - | chr3.4:78064750-78064769 | None:intergenic | 55.0% | |
| AGGATTCTACGCAAGGCTGC+AGG | - | chr3.4:78065797-78065816 | None:intergenic | 55.0% | |
| CAGGTACACCGATCGTTTGC+AGG | + | chr3.4:78066672-78066691 | MS.gene044350:intron | 55.0% | |
| CGTCAACGCACGTGACCAAT+GGG | + | chr3.4:78063171-78063190 | MS.gene044350:CDS | 55.0% | |
| CTCTACTACGCTTGTCTCGC+CGG | + | chr3.4:78063205-78063224 | MS.gene044350:CDS | 55.0% | |
| GCAGGAAGCCTGTCTTCTTC+AGG | - | chr3.4:78065779-78065798 | None:intergenic | 55.0% | |
| GCTTGGAAAACGTCGCCGTT+TGG | - | chr3.4:78063097-78063116 | None:intergenic | 55.0% | |
| GGGGACTGATGTGCCGAAAT+CGG | - | chr3.4:78063062-78063081 | None:intergenic | 55.0% | |
| GTGCCTGACGAGTCTTACCA+CGG | + | chr3.4:78064730-78064749 | MS.gene044350:intron | 55.0% | |
| GTTTCCTCTTAAGCGTGCGG+TGG | + | chr3.4:78066830-78066849 | MS.gene044350:CDS | 55.0% | |
| TCCACCGGAATGCGAATTGG+CGG | - | chr3.4:78063419-78063438 | None:intergenic | 55.0% | |
| TGTCCCGCCAATTCGCATTC+CGG | + | chr3.4:78063412-78063431 | MS.gene044350:CDS | 55.0% | |
| ! | GATGAGTCTCCAGATGGTGG+CGG | - | chr3.4:78067741-78067760 | None:intergenic | 55.0% |
| ACAACTGTCCCGAGCATGCC+TGG | + | chr3.4:78067768-78067787 | MS.gene044350:CDS | 60.0% | |
| AGAGAGCGGTGGAGTCCCAT+TGG | - | chr3.4:78063189-78063208 | None:intergenic | 60.0% | |
| AGGGAAGACCCAGGCATGCT+CGG | - | chr3.4:78067780-78067799 | None:intergenic | 60.0% | |
| CAACTGTCCCGAGCATGCCT+GGG | + | chr3.4:78067769-78067788 | MS.gene044350:CDS | 60.0% | |
| CCACCGGAATGCGAATTGGC+GGG | - | chr3.4:78063418-78063437 | None:intergenic | 60.0% | |
| CGACCGTGGTAAGACTCGTC+AGG | - | chr3.4:78064736-78064755 | None:intergenic | 60.0% | |
| GAAGCATACGAGCGGCATCG+AGG | - | chr3.4:78063234-78063253 | None:intergenic | 60.0% | |
| TCAGCCACCGCACGCTTAAG+AGG | - | chr3.4:78066837-78066856 | None:intergenic | 60.0% | |
| !! | GAAGGTAACGGAGACGGTCG+AGG | - | chr3.4:78063135-78063154 | None:intergenic | 60.0% |
| CCCGCCAATTCGCATTCCGG+TGG | + | chr3.4:78063415-78063434 | MS.gene044350:CDS | 65.0% | |
| GCGTGCGGTGGCTGATGTCT+TGG | + | chr3.4:78066842-78066861 | MS.gene044350:CDS | 65.0% | |
| GGGAAGACCCAGGCATGCTC+GGG | - | chr3.4:78067779-78067798 | None:intergenic | 65.0% | |
| ! | ACGAGCGGCATCGAGGTGAC+CGG | - | chr3.4:78063227-78063246 | None:intergenic | 65.0% |
| ! | GTTTTCCAAGCCTCCCGCGC+CGG | + | chr3.4:78063106-78063125 | MS.gene044350:CDS | 65.0% |
| ACGGAGACGGTCGAGGTCGC+CGG | - | chr3.4:78063128-78063147 | None:intergenic | 70.0% | |
| ! | ACGGTCGAGGTCGCCGGCGC+GGG | - | chr3.4:78063122-78063141 | None:intergenic | 80.0% |
| ! | GACGGTCGAGGTCGCCGGCG+CGG | - | chr3.4:78063123-78063142 | None:intergenic | 80.0% |
| ! | GGTCGCCGGCGCGGGAGGCT+TGG | - | chr3.4:78063114-78063133 | None:intergenic | 85.0% |
| ! | GTCGAGGTCGCCGGCGCGGG+AGG | - | chr3.4:78063119-78063138 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78063019 | 78068146 | 78063019 | ID=MS.gene044350 |
| chr3.4 | mRNA | 78063019 | 78068146 | 78063019 | ID=MS.gene044350.t1;Parent=MS.gene044350 |
| chr3.4 | exon | 78063019 | 78063451 | 78063019 | ID=MS.gene044350.t1.exon1;Parent=MS.gene044350.t1 |
| chr3.4 | CDS | 78063019 | 78063451 | 78063019 | ID=cds.MS.gene044350.t1;Parent=MS.gene044350.t1 |
| chr3.4 | exon | 78065369 | 78066128 | 78065369 | ID=MS.gene044350.t1.exon2;Parent=MS.gene044350.t1 |
| chr3.4 | CDS | 78065369 | 78066128 | 78065369 | ID=cds.MS.gene044350.t1;Parent=MS.gene044350.t1 |
| chr3.4 | exon | 78066675 | 78066711 | 78066675 | ID=MS.gene044350.t1.exon3;Parent=MS.gene044350.t1 |
| chr3.4 | CDS | 78066675 | 78066711 | 78066675 | ID=cds.MS.gene044350.t1;Parent=MS.gene044350.t1 |
| chr3.4 | exon | 78066792 | 78066925 | 78066792 | ID=MS.gene044350.t1.exon4;Parent=MS.gene044350.t1 |
| chr3.4 | CDS | 78066792 | 78066925 | 78066792 | ID=cds.MS.gene044350.t1;Parent=MS.gene044350.t1 |
| chr3.4 | exon | 78067635 | 78068013 | 78067635 | ID=MS.gene044350.t1.exon5;Parent=MS.gene044350.t1 |
| chr3.4 | CDS | 78067635 | 78068013 | 78067635 | ID=cds.MS.gene044350.t1;Parent=MS.gene044350.t1 |
| chr3.4 | exon | 78068096 | 78068146 | 78068096 | ID=MS.gene044350.t1.exon6;Parent=MS.gene044350.t1 |
| chr3.4 | CDS | 78068096 | 78068146 | 78068096 | ID=cds.MS.gene044350.t1;Parent=MS.gene044350.t1 |
| Gene Sequence |
| Protein sequence |
