Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044384.t1 | RHN63666.1 | 65.1 | 255 | 48 | 5 | 30 | 246 | 22 | 273 | 1.30E-74 | 289.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044384.t1 | Q9M9U9 | 68.7 | 115 | 35 | 1 | 125 | 238 | 125 | 239 | 1.1e-26 | 121.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044384.t1 | A0A396IDK0 | 65.1 | 255 | 48 | 5 | 30 | 246 | 22 | 273 | 9.5e-75 | 289.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene044384.t1 | TF | RWP-RK |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044384.t1 | MTR_0140s0010 | 62.447 | 237 | 34 | 6 | 30 | 228 | 1 | 220 | 7.34e-85 | 253 |
MS.gene044384.t1 | MTR_3g435550 | 53.757 | 173 | 67 | 4 | 82 | 245 | 5 | 173 | 1.20e-52 | 169 |
MS.gene044384.t1 | MTR_3g091700 | 53.704 | 108 | 41 | 2 | 133 | 240 | 159 | 257 | 4.27e-30 | 113 |
MS.gene044384.t1 | MTR_5g024070 | 35.802 | 162 | 89 | 3 | 85 | 242 | 169 | 319 | 4.32e-23 | 95.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044384.t1 | AT1G18790 | 65.217 | 115 | 39 | 1 | 125 | 238 | 125 | 239 | 2.94e-47 | 158 |
MS.gene044384.t1 | AT1G74480 | 40.928 | 237 | 120 | 6 | 16 | 234 | 8 | 242 | 2.75e-44 | 151 |
MS.gene044384.t1 | AT5G66990 | 58.678 | 121 | 48 | 2 | 122 | 240 | 153 | 273 | 1.89e-41 | 143 |
MS.gene044384.t1 | AT5G53040 | 55.856 | 111 | 40 | 1 | 128 | 238 | 148 | 249 | 8.27e-34 | 122 |
MS.gene044384.t1 | AT4G35590 | 34.667 | 150 | 89 | 3 | 92 | 235 | 157 | 303 | 3.93e-19 | 85.1 |
MS.gene044384.t1 | AT4G35590 | 34.667 | 150 | 89 | 3 | 92 | 235 | 207 | 353 | 6.84e-19 | 85.1 |
MS.gene044384.t1 | AT5G16100 | 41.176 | 85 | 48 | 1 | 125 | 207 | 351 | 435 | 1.07e-13 | 70.5 |
Find 56 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTTGCAGCTTGTGTTAT+TGG | 0.135392 | 8.4:+18676958 | None:intergenic |
TGACTTACATGTTAGGAAAT+TGG | 0.240258 | 8.4:+18677581 | None:intergenic |
GTTGATGGATATCGAGAAAT+TGG | 0.245834 | 8.4:-18676665 | MS.gene044384:CDS |
AATTGGCGGTTATATGAAAA+TGG | 0.251270 | 8.4:+18677598 | None:intergenic |
TGATCTTGCAATTGTATATC+TGG | 0.302877 | 8.4:+18676613 | None:intergenic |
AACCTTGATCAATAATATTC+AGG | 0.325902 | 8.4:-18676848 | MS.gene044384:intron |
ACAATGTTGTCTAAGCCTTT+TGG | 0.326924 | 8.4:+18676588 | None:intergenic |
TTACAAGAAAAGAAAGCTTA+TGG | 0.338403 | 8.4:-18676554 | MS.gene044384:CDS |
CTGCAGACGACTATGAAATT+TGG | 0.367816 | 8.4:-18677170 | MS.gene044384:intron |
ACTTAGTGTTGAAAAGTTGA+TGG | 0.379342 | 8.4:-18676680 | MS.gene044384:CDS |
TATTATTGATCAAGGTTTGC+AGG | 0.383508 | 8.4:+18676854 | None:intergenic |
ACCCATACACAATGATGGTT+TGG | 0.385554 | 8.4:-18677436 | MS.gene044384:CDS |
TTCCAAACCATCATTGTGTA+TGG | 0.398088 | 8.4:+18677434 | None:intergenic |
ACACAATGATGGTTTGGAAC+TGG | 0.400074 | 8.4:-18677430 | MS.gene044384:CDS |
AGTTTCATGACTTACATGTT+AGG | 0.403480 | 8.4:+18677574 | None:intergenic |
TACCTGAATATTATTGATCA+AGG | 0.420609 | 8.4:+18676846 | None:intergenic |
TATGGTATGGAGAAAGGATT+TGG | 0.421835 | 8.4:-18677147 | MS.gene044384:CDS |
TGATGATAACCTTCCAGCCT+TGG | 0.426088 | 8.4:+18677345 | None:intergenic |
TGAAATTAACAAAGAGGTTG+TGG | 0.431311 | 8.4:-18677067 | MS.gene044384:CDS |
GGCATTGGTTCAATGTATAG+AGG | 0.437542 | 8.4:+18677366 | None:intergenic |
ATTTGGTATGGTATGGAGAA+AGG | 0.442668 | 8.4:-18677153 | MS.gene044384:CDS |
TGTATAGAGGGTGATGATGA+GGG | 0.456423 | 8.4:+18677379 | None:intergenic |
AGAGTATGCCACTTACTTGT+TGG | 0.466970 | 8.4:-18677648 | MS.gene044384:CDS |
CATTGAACCAATGCCAAGGC+TGG | 0.480155 | 8.4:-18677358 | MS.gene044384:CDS |
CTATGAAATTTGGTATGGTA+TGG | 0.481213 | 8.4:-18677160 | MS.gene044384:CDS |
AGAGGAAATGAAGCTGGTGG+AGG | 0.485504 | 8.4:-18676641 | MS.gene044384:CDS |
GTTGCAGGAGCTAGGGAAAG+AGG | 0.496134 | 8.4:-18676710 | MS.gene044384:intron |
TGGATTTGGTTGCAGGAGCT+AGG | 0.503102 | 8.4:-18676718 | MS.gene044384:intron |
GGAGTGGAGAGGATTAGTGA+TGG | 0.512454 | 8.4:-18677030 | MS.gene044384:CDS |
GGATTTGGTTGCAGGAGCTA+GGG | 0.512821 | 8.4:-18676717 | MS.gene044384:intron |
GGAGGTAAAGCTAGAAGGAG+TGG | 0.514082 | 8.4:-18677046 | MS.gene044384:CDS |
ATGTATAGAGGGTGATGATG+AGG | 0.517675 | 8.4:+18677378 | None:intergenic |
GTTGTGGAGGTAAAGCTAGA+AGG | 0.522008 | 8.4:-18677051 | MS.gene044384:CDS |
TAAAAGCTCCAACAAGTAAG+TGG | 0.525627 | 8.4:+18677640 | None:intergenic |
TAACCTTCCAGCCTTGGCAT+TGG | 0.526844 | 8.4:+18677351 | None:intergenic |
TATTCACCCATACACAATGA+TGG | 0.527857 | 8.4:-18677441 | MS.gene044384:CDS |
GGATATCGAGAAATTGGAAG+AGG | 0.537710 | 8.4:-18676659 | MS.gene044384:CDS |
GACGACTATGAAATTTGGTA+TGG | 0.546215 | 8.4:-18677165 | MS.gene044384:CDS |
CTTACATGTTAGGAAATTGG+CGG | 0.547072 | 8.4:+18677584 | None:intergenic |
ATTGGAAGAGGAAATGAAGC+TGG | 0.556172 | 8.4:-18676647 | MS.gene044384:CDS |
AATTGCAAGATCATACCAAA+AGG | 0.561321 | 8.4:-18676603 | MS.gene044384:CDS |
TAAAGCTAGAAGGAGTGGAG+AGG | 0.578999 | 8.4:-18677041 | MS.gene044384:CDS |
GAACCAATGCCAAGGCTGGA+AGG | 0.579018 | 8.4:-18677354 | MS.gene044384:intron |
GTATAGAGGGTGATGATGAG+GGG | 0.582910 | 8.4:+18677380 | None:intergenic |
TCCAAACCATCATTGTGTAT+GGG | 0.593952 | 8.4:+18677435 | None:intergenic |
GCATTGGTTCAATGTATAGA+GGG | 0.595733 | 8.4:+18677367 | None:intergenic |
TGGAAATGAAATTAACAAAG+AGG | 0.597270 | 8.4:-18677073 | MS.gene044384:CDS |
AGCTGCAAGAGAACTGAATG+TGG | 0.601755 | 8.4:-18676947 | MS.gene044384:CDS |
GTAGGGAGTTGGGTATTCGT+AGG | 0.615855 | 8.4:-18676900 | MS.gene044384:CDS |
AATTAACAAAGAGGTTGTGG+AGG | 0.641037 | 8.4:-18677064 | MS.gene044384:CDS |
GCTGCAAGAGAACTGAATGT+GGG | 0.643443 | 8.4:-18676946 | MS.gene044384:CDS |
GGGAGTTGGGTATTCGTAGG+TGG | 0.654663 | 8.4:-18676897 | MS.gene044384:CDS |
GTAACACAAAGAATTTGTCA+AGG | 0.655690 | 8.4:-18677008 | MS.gene044384:CDS |
GGAAGAGGAAATGAAGCTGG+TGG | 0.660598 | 8.4:-18676644 | MS.gene044384:CDS |
CAGGAGCTAGGGAAAGAGGA+TGG | 0.660990 | 8.4:-18676706 | MS.gene044384:CDS |
TATACATTGAACCAATGCCA+AGG | 0.667387 | 8.4:-18677362 | MS.gene044384:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTCTCATTTTAAATTT+TGG | - | chr8.4:18676912-18676931 | MS.gene044384:CDS | 10.0% |
!!! | AATTTATTTAATTTTTGCAG+TGG | - | chr8.4:18676709-18676728 | MS.gene044384:intron | 15.0% |
!! | CATATAAAAATACTGAGATA+TGG | + | chr8.4:18677208-18677227 | None:intergenic | 20.0% |
!! | CATGCAAAAATTTATTACTT+CGG | - | chr8.4:18676667-18676686 | MS.gene044384:CDS | 20.0% |
!!! | AACATTATGTTGATTGTTTA+TGG | - | chr8.4:18677431-18677450 | MS.gene044384:CDS | 20.0% |
! | AACCTTGATCAATAATATTC+AGG | - | chr8.4:18677338-18677357 | MS.gene044384:intron | 25.0% |
! | CTTATAAATAATTGGGAATG+TGG | + | chr8.4:18676880-18676899 | None:intergenic | 25.0% |
! | TACCTGAATATTATTGATCA+AGG | + | chr8.4:18677343-18677362 | None:intergenic | 25.0% |
! | TGAGTATATTATGTTGGATT+TGG | - | chr8.4:18677454-18677473 | MS.gene044384:CDS | 25.0% |
! | TGGAAATGAAATTAACAAAG+AGG | - | chr8.4:18677113-18677132 | MS.gene044384:CDS | 25.0% |
! | TGTTCTTCTGATTAATATTG+TGG | - | chr8.4:18676987-18677006 | MS.gene044384:CDS | 25.0% |
! | TTACAAGAAAAGAAAGCTTA+TGG | - | chr8.4:18677632-18677651 | MS.gene044384:CDS | 25.0% |
! | TTATGGTGAGTATATTATGT+TGG | - | chr8.4:18677448-18677467 | MS.gene044384:CDS | 25.0% |
!! | AAGCTTTCTTTTCTTGTAAT+TGG | + | chr8.4:18677631-18677650 | None:intergenic | 25.0% |
!! | CGAAGTAATAAATTTTTGCA+TGG | + | chr8.4:18676669-18676688 | None:intergenic | 25.0% |
!!! | CTCATTTTAAATTTTGGTTG+CGG | - | chr8.4:18676918-18676937 | MS.gene044384:CDS | 25.0% |
AATTGCAAGATCATACCAAA+AGG | - | chr8.4:18677583-18677602 | MS.gene044384:intron | 30.0% | |
AATTGGCGGTTATATGAAAA+TGG | + | chr8.4:18676591-18676610 | None:intergenic | 30.0% | |
ACATTTGAAAAAACGGTGTA+GGG | - | chr8.4:18677269-18677288 | MS.gene044384:intron | 30.0% | |
AGTTTCATGACTTACATGTT+AGG | + | chr8.4:18676615-18676634 | None:intergenic | 30.0% | |
CTATGAAATTTGGTATGGTA+TGG | - | chr8.4:18677026-18677045 | MS.gene044384:CDS | 30.0% | |
GTAACACAAAGAATTTGTCA+AGG | - | chr8.4:18677178-18677197 | MS.gene044384:intron | 30.0% | |
TATTATTGATCAAGGTTTGC+AGG | + | chr8.4:18677335-18677354 | None:intergenic | 30.0% | |
TCTGATTAATATTGTGGTTG+TGG | - | chr8.4:18676993-18677012 | MS.gene044384:CDS | 30.0% | |
TGAAATTAACAAAGAGGTTG+TGG | - | chr8.4:18677119-18677138 | MS.gene044384:CDS | 30.0% | |
TGACTTACATGTTAGGAAAT+TGG | + | chr8.4:18676608-18676627 | None:intergenic | 30.0% | |
TGATCTTGCAATTGTATATC+TGG | + | chr8.4:18677576-18677595 | None:intergenic | 30.0% | |
! | ACTTAGTGTTGAAAAGTTGA+TGG | - | chr8.4:18677506-18677525 | MS.gene044384:intron | 30.0% |
!! | GCTTAGACAACATTGTTTTA+AGG | - | chr8.4:18677605-18677624 | MS.gene044384:CDS | 30.0% |
AATTAACAAAGAGGTTGTGG+AGG | - | chr8.4:18677122-18677141 | MS.gene044384:CDS | 35.0% | |
ATTTGGTATGGTATGGAGAA+AGG | - | chr8.4:18677033-18677052 | MS.gene044384:CDS | 35.0% | |
CACATTTGAAAAAACGGTGT+AGG | - | chr8.4:18677268-18677287 | MS.gene044384:intron | 35.0% | |
CTTACATGTTAGGAAATTGG+CGG | + | chr8.4:18676605-18676624 | None:intergenic | 35.0% | |
GACGACTATGAAATTTGGTA+TGG | - | chr8.4:18677021-18677040 | MS.gene044384:CDS | 35.0% | |
GCCTCACACATTTGAAAAAA+CGG | - | chr8.4:18677262-18677281 | MS.gene044384:intron | 35.0% | |
TAAAAGCTCCAACAAGTAAG+TGG | + | chr8.4:18676549-18676568 | None:intergenic | 35.0% | |
TATACATTGAACCAATGCCA+AGG | - | chr8.4:18676824-18676843 | MS.gene044384:intron | 35.0% | |
TATGGTATGGAGAAAGGATT+TGG | - | chr8.4:18677039-18677058 | MS.gene044384:CDS | 35.0% | |
TATTCACCCATACACAATGA+TGG | - | chr8.4:18676745-18676764 | MS.gene044384:intron | 35.0% | |
TCCAAACCATCATTGTGTAT+GGG | + | chr8.4:18676754-18676773 | None:intergenic | 35.0% | |
TTCCAAACCATCATTGTGTA+TGG | + | chr8.4:18676755-18676774 | None:intergenic | 35.0% | |
! | ACAATGTTGTCTAAGCCTTT+TGG | + | chr8.4:18677601-18677620 | None:intergenic | 35.0% |
! | ATTATGTTGGATTTGGTTGC+AGG | - | chr8.4:18677461-18677480 | MS.gene044384:intron | 35.0% |
! | GCGTTTGATTCTGAAAAAAG+TGG | - | chr8.4:18677093-18677112 | MS.gene044384:CDS | 35.0% |
! | GTTGATGGATATCGAGAAAT+TGG | - | chr8.4:18677521-18677540 | MS.gene044384:intron | 35.0% |
!! | GCATTGGTTCAATGTATAGA+GGG | + | chr8.4:18676822-18676841 | None:intergenic | 35.0% |
!!! | ACCGTTTTTTCAAATGTGTG+AGG | + | chr8.4:18677266-18677285 | None:intergenic | 35.0% |
AAAAAACGGTGTAGGGAGTT+GGG | - | chr8.4:18677276-18677295 | MS.gene044384:intron | 40.0% | |
ACCCATACACAATGATGGTT+TGG | - | chr8.4:18676750-18676769 | MS.gene044384:intron | 40.0% | |
ATTGGAAGAGGAAATGAAGC+TGG | - | chr8.4:18677539-18677558 | MS.gene044384:intron | 40.0% | |
CTGCAGACGACTATGAAATT+TGG | - | chr8.4:18677016-18677035 | MS.gene044384:CDS | 40.0% | |
GGATATCGAGAAATTGGAAG+AGG | - | chr8.4:18677527-18677546 | MS.gene044384:intron | 40.0% | |
TCTCTTGCAGCTTGTGTTAT+TGG | + | chr8.4:18677231-18677250 | None:intergenic | 40.0% | |
TTGGGAATGTGGCATGTATA+TGG | + | chr8.4:18676869-18676888 | None:intergenic | 40.0% | |
! | ACACAATGATGGTTTGGAAC+TGG | - | chr8.4:18676756-18676775 | MS.gene044384:intron | 40.0% |
! | AGAGTATGCCACTTACTTGT+TGG | - | chr8.4:18676538-18676557 | MS.gene044384:CDS | 40.0% |
! | AGGCTCATGAGTTTTCTATG+GGG | + | chr8.4:18677315-18677334 | None:intergenic | 40.0% |
! | ATGTATAGAGGGTGATGATG+AGG | + | chr8.4:18676811-18676830 | None:intergenic | 40.0% |
! | CAGGCTCATGAGTTTTCTAT+GGG | + | chr8.4:18677316-18677335 | None:intergenic | 40.0% |
! | TGTATAGAGGGTGATGATGA+GGG | + | chr8.4:18676810-18676829 | None:intergenic | 40.0% |
!! | GGCATTGGTTCAATGTATAG+AGG | + | chr8.4:18676823-18676842 | None:intergenic | 40.0% |
AGCTGCAAGAGAACTGAATG+TGG | - | chr8.4:18677239-18677258 | MS.gene044384:intron | 45.0% | |
GAAAAAACGGTGTAGGGAGT+TGG | - | chr8.4:18677275-18677294 | MS.gene044384:intron | 45.0% | |
GCTGCAAGAGAACTGAATGT+GGG | - | chr8.4:18677240-18677259 | MS.gene044384:intron | 45.0% | |
GTTGTGGAGGTAAAGCTAGA+AGG | - | chr8.4:18677135-18677154 | MS.gene044384:CDS | 45.0% | |
TAAAGCTAGAAGGAGTGGAG+AGG | - | chr8.4:18677145-18677164 | MS.gene044384:CDS | 45.0% | |
TGATGATAACCTTCCAGCCT+TGG | + | chr8.4:18676844-18676863 | None:intergenic | 45.0% | |
! | GCAGGCTCATGAGTTTTCTA+TGG | + | chr8.4:18677317-18677336 | None:intergenic | 45.0% |
! | GTATAGAGGGTGATGATGAG+GGG | + | chr8.4:18676809-18676828 | None:intergenic | 45.0% |
!! | ATATAAACTTATAAATAATT+GGG | + | chr8.4:18676887-18676906 | None:intergenic | 5.0% |
!! | TATATAAACTTATAAATAAT+TGG | + | chr8.4:18676888-18676907 | None:intergenic | 5.0% |
!!! | GTTATTATTATTATTATTTT+TGG | + | chr8.4:18677414-18677433 | None:intergenic | 5.0% |
AGAGGAAATGAAGCTGGTGG+AGG | - | chr8.4:18677545-18677564 | MS.gene044384:intron | 50.0% | |
CATTGAACCAATGCCAAGGC+TGG | - | chr8.4:18676828-18676847 | MS.gene044384:intron | 50.0% | |
GGAAGAGGAAATGAAGCTGG+TGG | - | chr8.4:18677542-18677561 | MS.gene044384:intron | 50.0% | |
GGAGGTAAAGCTAGAAGGAG+TGG | - | chr8.4:18677140-18677159 | MS.gene044384:CDS | 50.0% | |
GTAGGGAGTTGGGTATTCGT+AGG | - | chr8.4:18677286-18677305 | MS.gene044384:intron | 50.0% | |
TAACCTTCCAGCCTTGGCAT+TGG | + | chr8.4:18676838-18676857 | None:intergenic | 50.0% | |
! | GGAGTGGAGAGGATTAGTGA+TGG | - | chr8.4:18677156-18677175 | MS.gene044384:CDS | 50.0% |
! | GGATTTGGTTGCAGGAGCTA+GGG | - | chr8.4:18677469-18677488 | MS.gene044384:intron | 50.0% |
! | TGGATTTGGTTGCAGGAGCT+AGG | - | chr8.4:18677468-18677487 | MS.gene044384:intron | 50.0% |
CAGGAGCTAGGGAAAGAGGA+TGG | - | chr8.4:18677480-18677499 | MS.gene044384:intron | 55.0% | |
GAACCAATGCCAAGGCTGGA+AGG | - | chr8.4:18676832-18676851 | MS.gene044384:intron | 55.0% | |
GGGAGTTGGGTATTCGTAGG+TGG | - | chr8.4:18677289-18677308 | MS.gene044384:intron | 55.0% | |
GTTGCAGGAGCTAGGGAAAG+AGG | - | chr8.4:18677476-18677495 | MS.gene044384:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 18676534 | 18677674 | 18676534 | ID=MS.gene044384 |
chr8.4 | mRNA | 18676534 | 18677674 | 18676534 | ID=MS.gene044384.t1;Parent=MS.gene044384 |
chr8.4 | exon | 18677589 | 18677674 | 18677589 | ID=MS.gene044384.t1.exon1;Parent=MS.gene044384.t1 |
chr8.4 | CDS | 18677589 | 18677674 | 18677589 | ID=cds.MS.gene044384.t1;Parent=MS.gene044384.t1 |
chr8.4 | exon | 18677355 | 18677479 | 18677355 | ID=MS.gene044384.t1.exon2;Parent=MS.gene044384.t1 |
chr8.4 | CDS | 18677355 | 18677479 | 18677355 | ID=cds.MS.gene044384.t1;Parent=MS.gene044384.t1 |
chr8.4 | exon | 18676849 | 18677186 | 18676849 | ID=MS.gene044384.t1.exon3;Parent=MS.gene044384.t1 |
chr8.4 | CDS | 18676849 | 18677186 | 18676849 | ID=cds.MS.gene044384.t1;Parent=MS.gene044384.t1 |
chr8.4 | exon | 18676534 | 18676725 | 18676534 | ID=MS.gene044384.t1.exon4;Parent=MS.gene044384.t1 |
chr8.4 | CDS | 18676534 | 18676725 | 18676534 | ID=cds.MS.gene044384.t1;Parent=MS.gene044384.t1 |
Gene Sequence |
Protein sequence |