Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04439.t1 | XP_024630170.1 | 60.7 | 750 | 76 | 4 | 1 | 532 | 1 | 749 | 6.00E-234 | 820.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04439.t1 | Q9SZL8 | 29.5 | 482 | 291 | 12 | 6 | 449 | 69 | 539 | 1.0e-48 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04439.t1 | A0A1S2XKF4 | 47.0 | 732 | 166 | 10 | 1 | 531 | 1 | 711 | 9.0e-163 | 583.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04439.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04439.t1 | MTR_7g074790 | 72.472 | 178 | 31 | 1 | 1 | 178 | 1 | 160 | 4.23e-84 | 260 |
| MS.gene04439.t1 | MTR_7g074790 | 81.081 | 74 | 13 | 1 | 459 | 532 | 157 | 229 | 4.30e-34 | 129 |
| MS.gene04439.t1 | MTR_5g039760 | 61.165 | 206 | 55 | 2 | 1 | 205 | 1 | 182 | 8.89e-82 | 253 |
| MS.gene04439.t1 | MTR_7g061980 | 66.387 | 119 | 40 | 0 | 1 | 119 | 1 | 119 | 1.71e-52 | 174 |
| MS.gene04439.t1 | MTR_0402s0040 | 41.989 | 181 | 100 | 4 | 10 | 187 | 26 | 204 | 5.76e-31 | 126 |
| MS.gene04439.t1 | MTR_0558s0020 | 30.385 | 260 | 155 | 7 | 3 | 242 | 32 | 285 | 6.16e-30 | 119 |
| MS.gene04439.t1 | MTR_3g058090 | 52.212 | 113 | 33 | 1 | 336 | 448 | 15 | 106 | 6.61e-27 | 105 |
| MS.gene04439.t1 | MTR_4g102720 | 34.911 | 169 | 76 | 2 | 7 | 175 | 4 | 138 | 9.10e-27 | 108 |
| MS.gene04439.t1 | MTR_6g051425 | 29.098 | 244 | 158 | 6 | 9 | 242 | 13 | 251 | 2.46e-26 | 110 |
| MS.gene04439.t1 | MTR_1g083640 | 27.984 | 243 | 152 | 6 | 3 | 225 | 47 | 286 | 6.20e-25 | 105 |
| MS.gene04439.t1 | MTR_8g446020 | 28.926 | 242 | 143 | 7 | 3 | 242 | 31 | 245 | 1.71e-23 | 100 |
| MS.gene04439.t1 | MTR_4g069880 | 58.824 | 68 | 28 | 0 | 1 | 68 | 1 | 68 | 3.79e-21 | 87.8 |
| MS.gene04439.t1 | MTR_6g090505 | 30.374 | 214 | 130 | 6 | 45 | 242 | 10 | 220 | 3.46e-20 | 92.8 |
| MS.gene04439.t1 | MTR_1g070355 | 25.431 | 232 | 163 | 4 | 15 | 242 | 79 | 304 | 1.03e-18 | 89.7 |
| MS.gene04439.t1 | MTR_1g019850 | 33.566 | 143 | 82 | 4 | 3 | 141 | 63 | 196 | 1.06e-17 | 82.8 |
| MS.gene04439.t1 | MTR_5g015480 | 42.636 | 129 | 67 | 4 | 4 | 129 | 53 | 177 | 5.02e-17 | 81.6 |
| MS.gene04439.t1 | MTR_0337s0040 | 27.751 | 209 | 128 | 4 | 11 | 217 | 37 | 224 | 1.67e-16 | 79.3 |
| MS.gene04439.t1 | MTR_2g099430 | 48.837 | 86 | 42 | 2 | 35 | 119 | 28 | 112 | 1.93e-16 | 75.9 |
| MS.gene04439.t1 | MTR_7g113010 | 41.732 | 127 | 58 | 5 | 10 | 134 | 457 | 569 | 1.75e-15 | 79.7 |
| MS.gene04439.t1 | MTR_4g117620 | 70.588 | 51 | 13 | 2 | 481 | 531 | 29 | 77 | 1.63e-14 | 69.3 |
| MS.gene04439.t1 | MTR_1g013060 | 27.962 | 211 | 139 | 4 | 7 | 208 | 21 | 227 | 1.95e-14 | 73.2 |
| MS.gene04439.t1 | MTR_2g014100 | 25.837 | 209 | 132 | 6 | 3 | 191 | 40 | 245 | 2.37e-14 | 73.6 |
| MS.gene04439.t1 | MTR_5g076070 | 24.783 | 230 | 165 | 4 | 13 | 239 | 56 | 280 | 4.50e-14 | 73.2 |
| MS.gene04439.t1 | MTR_2g070590 | 41.346 | 104 | 57 | 3 | 10 | 110 | 17 | 119 | 5.46e-13 | 66.2 |
| MS.gene04439.t1 | MTR_6g017200 | 45.783 | 83 | 43 | 2 | 10 | 91 | 58 | 139 | 5.99e-13 | 67.0 |
| MS.gene04439.t1 | MTR_7g446520 | 24.490 | 245 | 158 | 5 | 14 | 249 | 92 | 318 | 1.04e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04439.t1 | AT4G38180 | 31.818 | 374 | 217 | 6 | 6 | 344 | 69 | 439 | 5.57e-52 | 189 |
| MS.gene04439.t1 | AT4G15090 | 28.021 | 389 | 231 | 8 | 3 | 357 | 44 | 417 | 4.93e-45 | 170 |
| MS.gene04439.t1 | AT4G15090 | 28.021 | 389 | 231 | 8 | 3 | 357 | 44 | 417 | 4.93e-45 | 170 |
| MS.gene04439.t1 | AT4G15090 | 28.021 | 389 | 231 | 8 | 3 | 357 | 44 | 417 | 4.93e-45 | 170 |
| MS.gene04439.t1 | AT4G15090 | 28.021 | 389 | 231 | 8 | 3 | 357 | 44 | 417 | 4.93e-45 | 170 |
| MS.gene04439.t1 | AT4G15090 | 28.021 | 389 | 231 | 8 | 3 | 357 | 44 | 417 | 4.93e-45 | 170 |
| MS.gene04439.t1 | AT1G76320 | 28.302 | 371 | 217 | 9 | 14 | 348 | 1 | 358 | 1.05e-33 | 135 |
| MS.gene04439.t1 | AT1G76320 | 28.302 | 371 | 217 | 9 | 14 | 348 | 1 | 358 | 1.16e-33 | 136 |
| MS.gene04439.t1 | AT1G76320 | 28.302 | 371 | 217 | 9 | 14 | 348 | 1 | 358 | 1.24e-33 | 136 |
| MS.gene04439.t1 | AT1G76320 | 28.302 | 371 | 217 | 9 | 14 | 348 | 1 | 358 | 1.24e-33 | 136 |
| MS.gene04439.t1 | AT3G22170 | 24.468 | 376 | 216 | 6 | 3 | 333 | 63 | 415 | 1.77e-31 | 129 |
| MS.gene04439.t1 | AT3G22170 | 24.468 | 376 | 216 | 6 | 3 | 333 | 63 | 415 | 1.77e-31 | 129 |
| MS.gene04439.t1 | AT2G27110 | 27.446 | 368 | 208 | 8 | 9 | 345 | 48 | 387 | 9.07e-30 | 124 |
| MS.gene04439.t1 | AT2G27110 | 27.446 | 368 | 208 | 8 | 9 | 345 | 48 | 387 | 9.07e-30 | 124 |
| MS.gene04439.t1 | AT3G06250 | 25.858 | 379 | 195 | 11 | 9 | 349 | 189 | 519 | 5.18e-29 | 122 |
| MS.gene04439.t1 | AT3G06250 | 38.462 | 104 | 48 | 3 | 9 | 110 | 27 | 116 | 6.43e-11 | 65.5 |
| MS.gene04439.t1 | AT3G06250 | 25.858 | 379 | 195 | 11 | 9 | 349 | 189 | 519 | 5.18e-29 | 122 |
| MS.gene04439.t1 | AT3G06250 | 38.462 | 104 | 48 | 3 | 9 | 110 | 27 | 116 | 6.43e-11 | 65.5 |
| MS.gene04439.t1 | AT3G06250 | 25.858 | 379 | 195 | 11 | 9 | 349 | 189 | 519 | 5.18e-29 | 122 |
| MS.gene04439.t1 | AT3G06250 | 38.462 | 104 | 48 | 3 | 9 | 110 | 27 | 116 | 6.43e-11 | 65.5 |
| MS.gene04439.t1 | AT5G18960 | 25.066 | 379 | 201 | 12 | 9 | 349 | 210 | 543 | 3.99e-25 | 110 |
| MS.gene04439.t1 | AT5G18960 | 39.423 | 104 | 47 | 3 | 9 | 110 | 42 | 131 | 1.38e-11 | 67.8 |
| MS.gene04439.t1 | AT5G18960 | 25.066 | 379 | 201 | 12 | 9 | 349 | 210 | 543 | 3.99e-25 | 110 |
| MS.gene04439.t1 | AT5G18960 | 39.423 | 104 | 47 | 3 | 9 | 110 | 42 | 131 | 1.38e-11 | 67.8 |
| MS.gene04439.t1 | AT1G10240 | 24.185 | 368 | 234 | 8 | 10 | 336 | 48 | 411 | 4.80e-23 | 103 |
| MS.gene04439.t1 | AT1G10240 | 24.185 | 368 | 234 | 8 | 10 | 336 | 48 | 411 | 4.80e-23 | 103 |
| MS.gene04439.t1 | AT2G27110 | 29.665 | 209 | 114 | 2 | 168 | 345 | 36 | 242 | 4.87e-22 | 100 |
| MS.gene04439.t1 | AT1G52520 | 23.342 | 377 | 231 | 12 | 10 | 348 | 85 | 441 | 9.20e-21 | 96.7 |
| MS.gene04439.t1 | AT5G28530 | 21.856 | 334 | 212 | 5 | 8 | 294 | 53 | 384 | 1.32e-20 | 96.3 |
| MS.gene04439.t1 | AT5G28530 | 21.856 | 334 | 212 | 5 | 8 | 294 | 53 | 384 | 1.41e-20 | 95.9 |
| MS.gene04439.t1 | AT5G28530 | 21.856 | 334 | 212 | 5 | 8 | 294 | 53 | 384 | 1.41e-20 | 95.9 |
| MS.gene04439.t1 | AT5G28530 | 22.753 | 356 | 232 | 9 | 8 | 357 | 53 | 371 | 1.46e-20 | 95.9 |
| MS.gene04439.t1 | AT5G28530 | 22.753 | 356 | 232 | 9 | 8 | 357 | 53 | 371 | 1.50e-20 | 95.9 |
Find 87 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAATTCCATCATTTAAA+TGG | 0.223041 | 3.4:+57931843 | MS.gene04439:CDS |
| TGGAAGAGGCTGAACAATTT+TGG | 0.228865 | 3.4:+57931083 | MS.gene04439:CDS |
| ATTACACTTTCACGTCAAAA+TGG | 0.279218 | 3.4:+57931289 | MS.gene04439:CDS |
| TGGAATGAAATTTGATACTA+TGG | 0.288067 | 3.4:+57931063 | MS.gene04439:CDS |
| TGATGATGTTACAAATATTC+AGG | 0.293363 | 3.4:+57933422 | MS.gene04439:CDS |
| AACAAATTACAAACGTGTTC+TGG | 0.334571 | 3.4:+57931659 | MS.gene04439:CDS |
| ATGGCTGATGACTCTGGATT+AGG | 0.348989 | 3.4:+57931430 | MS.gene04439:CDS |
| GCATGTTTCTTGAATCCCTT+TGG | 0.367868 | 3.4:-57932982 | None:intergenic |
| GGAATTAAACATCTTGGAAA+TGG | 0.370237 | 3.4:+57932010 | MS.gene04439:CDS |
| TGACATCTTCAAATGTTGAT+TGG | 0.374678 | 3.4:+57931029 | MS.gene04439:CDS |
| CAGAATGGAATTAAACATCT+TGG | 0.376869 | 3.4:+57932004 | MS.gene04439:CDS |
| CTAGTTTGAGCATGTTTACT+TGG | 0.384506 | 3.4:-57933072 | None:intergenic |
| TGGCTGATGACTCTGGATTA+GGG | 0.390441 | 3.4:+57931431 | MS.gene04439:CDS |
| TCAAATTTCATTCCAAGTCT+TGG | 0.395389 | 3.4:-57931055 | None:intergenic |
| TTATGTCGCTTAGTTCCCTT+TGG | 0.401911 | 3.4:-57933009 | None:intergenic |
| CCCTAGACATTGCTTGACTT+TGG | 0.402723 | 3.4:-57931925 | None:intergenic |
| TCAAACAACCATTTAAATGA+TGG | 0.407895 | 3.4:-57931851 | None:intergenic |
| TGGTCAGTGAAGATCGTCTT+TGG | 0.409022 | 3.4:-57931905 | None:intergenic |
| TATACCTGTGAATTTCTTTG+AGG | 0.409803 | 3.4:-57933105 | None:intergenic |
| TATAAAATTAACAACTCAAA+TGG | 0.424095 | 3.4:+57933205 | MS.gene04439:CDS |
| CTTCTTAAAATATACTTCTC+AGG | 0.433030 | 3.4:-57932691 | None:intergenic |
| GTATTTCCAACAGCAATTGT+TGG | 0.433256 | 3.4:+57931594 | MS.gene04439:CDS |
| TGTCTAGAAATCGAATGTTC+AGG | 0.434178 | 3.4:+57932785 | MS.gene04439:CDS |
| ATCTTGCACAATGCCATAAC+GGG | 0.434412 | 3.4:-57932728 | None:intergenic |
| ATGTAGGTTTGTTTGTTGTA+AGG | 0.436082 | 3.4:+57931183 | MS.gene04439:CDS |
| ACAAGCAAATGAGATTGATA+TGG | 0.437582 | 3.4:+57931411 | MS.gene04439:CDS |
| TTAACAACTCAAATGGTTGA+TGG | 0.439086 | 3.4:+57933212 | MS.gene04439:CDS |
| CCGTTCTAGACTCGGCTCTC+CGG | 0.443682 | 3.4:-57931252 | None:intergenic |
| ATTGATATGGCTGATGACTC+TGG | 0.443968 | 3.4:+57931424 | MS.gene04439:CDS |
| ACCTGTGAATTTCTTTGAGG+TGG | 0.445591 | 3.4:-57933102 | None:intergenic |
| AAAGGAGGTTCTTTGCTAAG+AGG | 0.453456 | 3.4:+57932040 | MS.gene04439:CDS |
| CATAAACCATGGTGAGTCTC+AGG | 0.455966 | 3.4:-57931965 | None:intergenic |
| ATTCGATTTCTAGACAACTT+AGG | 0.457251 | 3.4:-57932778 | None:intergenic |
| ACATGTCCTCACGTGCTAGC+GGG | 0.469336 | 3.4:-57933268 | None:intergenic |
| CCTGTGAATTTCTTTGAGGT+GGG | 0.471695 | 3.4:-57933101 | None:intergenic |
| AATCTTGCACAATGCCATAA+CGG | 0.484556 | 3.4:-57932729 | None:intergenic |
| GTTTGAGCATGTTTACTTGG+AGG | 0.485005 | 3.4:-57933069 | None:intergenic |
| AGGTTTGTTTGTTGTAAGGA+AGG | 0.486878 | 3.4:+57931187 | MS.gene04439:CDS |
| TGTCGCTTAGTTCCCTTTGG+AGG | 0.489630 | 3.4:-57933006 | None:intergenic |
| TGGACAAGAGAAGCCCGTTA+TGG | 0.496786 | 3.4:+57932715 | MS.gene04439:CDS |
| GTTGATTGGAAGCCAAGACT+TGG | 0.497681 | 3.4:+57931043 | MS.gene04439:CDS |
| CTTGGAAATGGAATGAAGAA+AGG | 0.500755 | 3.4:+57932022 | MS.gene04439:CDS |
| CATGTCCTCACGTGCTAGCG+GGG | 0.504056 | 3.4:-57933267 | None:intergenic |
| CTGGTCATCCATGAGTTTGA+AGG | 0.505313 | 3.4:+57931316 | MS.gene04439:CDS |
| CTTCTTTCATGCATATCAGA+TGG | 0.507819 | 3.4:+57931627 | MS.gene04439:CDS |
| TGAGAAAGCTTGGTTTGACT+TGG | 0.510934 | 3.4:+57932105 | MS.gene04439:CDS |
| TAGTTACACAACTATGATGA+TGG | 0.512138 | 3.4:+57933295 | MS.gene04439:CDS |
| ACCAAAGTCAAGCAATGTCT+AGG | 0.513361 | 3.4:+57931924 | MS.gene04439:CDS |
| GATTCTCCAACAATTGCTGT+TGG | 0.523496 | 3.4:-57931600 | None:intergenic |
| GAAATTTGATACTATGGAAG+AGG | 0.525500 | 3.4:+57931069 | MS.gene04439:CDS |
| TTCACGTCAAAATGGAAAGC+TGG | 0.527122 | 3.4:+57931297 | MS.gene04439:CDS |
| TTCTGATGCTATACAACCAA+AGG | 0.531212 | 3.4:+57932966 | MS.gene04439:CDS |
| AGCATGGTGTATGGCGACGC+TGG | 0.534307 | 3.4:+57931559 | MS.gene04439:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.537532 | 3.4:+57931469 | MS.gene04439:CDS |
| AAGAAACATGCTCCTCCAAA+GGG | 0.539093 | 3.4:+57932994 | MS.gene04439:CDS |
| TAAGCAATCCGTTCTAGACT+CGG | 0.542410 | 3.4:-57931260 | None:intergenic |
| CAAGAAACATGCTCCTCCAA+AGG | 0.544628 | 3.4:+57932993 | MS.gene04439:CDS |
| CATCTGATATGCATGAAAGA+AGG | 0.546601 | 3.4:-57931626 | None:intergenic |
| CTGTGAATTTCTTTGAGGTG+GGG | 0.560693 | 3.4:-57933100 | None:intergenic |
| CTCACCATGGTTTATGCACA+TGG | 0.561626 | 3.4:+57931972 | MS.gene04439:CDS |
| CCGGAGAGCCGAGTCTAGAA+CGG | 0.566334 | 3.4:+57931252 | MS.gene04439:CDS |
| CGAAATGTTCAAGAAAGCAA+TGG | 0.571716 | 3.4:+57932891 | MS.gene04439:CDS |
| ACACAAGCTATAGAAAATGA+TGG | 0.577177 | 3.4:+57932922 | MS.gene04439:CDS |
| CCCACCTCAAAGAAATTCAC+AGG | 0.578108 | 3.4:+57933101 | MS.gene04439:CDS |
| TTCTATGTGATCGAAGCATG+TGG | 0.582014 | 3.4:-57931375 | None:intergenic |
| GCAGGGCATAGAGCTAATGT+TGG | 0.592621 | 3.4:+57931487 | MS.gene04439:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.596381 | 3.4:+57931470 | MS.gene04439:CDS |
| CCAAAGTCAAGCAATGTCTA+GGG | 0.598556 | 3.4:+57931925 | MS.gene04439:CDS |
| TCTGATGCTATACAACCAAA+GGG | 0.598723 | 3.4:+57932967 | MS.gene04439:CDS |
| TGTTTCTAAGTTCATTAGAG+CGG | 0.599783 | 3.4:+57932813 | MS.gene04439:CDS |
| GCATCAGAACTCACAAATGA+CGG | 0.601171 | 3.4:-57932952 | None:intergenic |
| ACGGCGATGTATCGTCATGT+AGG | 0.604688 | 3.4:+57931167 | MS.gene04439:CDS |
| AACATGTCCTCACGTGCTAG+CGG | 0.607345 | 3.4:-57933269 | None:intergenic |
| TGACTCTGGATTAGGGCAGA+AGG | 0.608129 | 3.4:+57931438 | MS.gene04439:CDS |
| TTTGTTGTAAGGAAGGACTA+CGG | 0.614427 | 3.4:+57931194 | MS.gene04439:CDS |
| ACATGGCACTTGTTGCAGAA+TGG | 0.627403 | 3.4:+57931989 | MS.gene04439:CDS |
| ATGTCCTCACGTGCTAGCGG+GGG | 0.629467 | 3.4:-57933266 | None:intergenic |
| GGAAATGGAATGAAGAAAGG+AGG | 0.638695 | 3.4:+57932025 | MS.gene04439:CDS |
| TGATATGCATGAAAGAAGGA+CGG | 0.649185 | 3.4:-57931622 | None:intergenic |
| CACTATTATCAAGAAGCATG+AGG | 0.669252 | 3.4:-57932864 | None:intergenic |
| TCTATGTGATCGAAGCATGT+GGG | 0.671774 | 3.4:-57931374 | None:intergenic |
| ATATTTGTAACATCATCAAG+AGG | 0.673556 | 3.4:-57933417 | None:intergenic |
| GGGCTCATAAGTTGGAGGCG+CGG | 0.683549 | 3.4:-57933246 | None:intergenic |
| TAATGTTGGATATACAGAAG+TGG | 0.683641 | 3.4:+57931501 | MS.gene04439:CDS |
| TTTACAAACAAGAACAAACA+CGG | 0.696353 | 3.4:+57931148 | MS.gene04439:CDS |
| GTGATGCCTGAGACTCACCA+TGG | 0.716138 | 3.4:+57931959 | MS.gene04439:CDS |
| AGTGCCATGTGCATAAACCA+TGG | 0.773388 | 3.4:-57931976 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAATTAATATCC+AGG | - | chr3.4:57933351-57933370 | None:intergenic | 10.0% |
| !!! | TTATTTCTTATTATTAATGT+AGG | + | chr3.4:57933392-57933411 | MS.gene04439:intron | 10.0% |
| !! | ATAATCTTCACAATAATAAT+TGG | + | chr3.4:57932137-57932156 | MS.gene04439:intron | 15.0% |
| !! | TATAAAATTAACAACTCAAA+TGG | + | chr3.4:57933205-57933224 | MS.gene04439:CDS | 15.0% |
| !! | TTATGCCATTAAAAAAAAAT+GGG | + | chr3.4:57932171-57932190 | MS.gene04439:intron | 15.0% |
| !! | TTTATGCCATTAAAAAAAAA+TGG | + | chr3.4:57932170-57932189 | MS.gene04439:intron | 15.0% |
| !!! | TAGTTTTACATAATCATTTT+AGG | + | chr3.4:57933181-57933200 | MS.gene04439:intron | 15.0% |
| !!! | AATTTCATATCATTTTCATG+AGG | + | chr3.4:57933319-57933338 | MS.gene04439:intron | 20.0% |
| ! | AGACAATTCCATCATTTAAA+TGG | + | chr3.4:57931843-57931862 | MS.gene04439:CDS | 25.0% |
| ! | ATATTTGTAACATCATCAAG+AGG | - | chr3.4:57933420-57933439 | None:intergenic | 25.0% |
| ! | CAAAATGTTTGAAGAATTGT+AGG | - | chr3.4:57932303-57932322 | None:intergenic | 25.0% |
| ! | CTTCTTAAAATATACTTCTC+AGG | - | chr3.4:57932694-57932713 | None:intergenic | 25.0% |
| ! | GAGAAAAAATATGCATATGA+AGG | + | chr3.4:57931223-57931242 | MS.gene04439:CDS | 25.0% |
| ! | GTTTGAATTGAATGATGTTA+AGG | + | chr3.4:57932663-57932682 | MS.gene04439:intron | 25.0% |
| ! | TACAAAAAGAAAAAGAAGCA+TGG | + | chr3.4:57931543-57931562 | MS.gene04439:CDS | 25.0% |
| ! | TCAAACAACCATTTAAATGA+TGG | - | chr3.4:57931854-57931873 | None:intergenic | 25.0% |
| ! | TGGAATGAAATTTGATACTA+TGG | + | chr3.4:57931063-57931082 | MS.gene04439:CDS | 25.0% |
| ! | TGTAAGATGTATGATACATT+TGG | + | chr3.4:57932613-57932632 | MS.gene04439:intron | 25.0% |
| ! | TTTACAAACAAGAACAAACA+CGG | + | chr3.4:57931148-57931167 | MS.gene04439:CDS | 25.0% |
| !! | CAAAAATGATTTTGGATTAC+GGG | + | chr3.4:57931689-57931708 | MS.gene04439:CDS | 25.0% |
| !! | GCAAAAATGATTTTGGATTA+CGG | + | chr3.4:57931688-57931707 | MS.gene04439:CDS | 25.0% |
| !! | TGATGATGTTACAAATATTC+AGG | + | chr3.4:57933422-57933441 | MS.gene04439:CDS | 25.0% |
| !!! | AGAAGTATATTTTAAGAAGG+TGG | + | chr3.4:57932695-57932714 | MS.gene04439:CDS | 25.0% |
| !!! | CTGAGAAGTATATTTTAAGA+AGG | + | chr3.4:57932692-57932711 | MS.gene04439:CDS | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | - | chr3.4:57931764-57931783 | None:intergenic | 30.0% | |
| AAATGATCGTACCTCTATAA+TGG | - | chr3.4:57931799-57931818 | None:intergenic | 30.0% | |
| AACAAATTACAAACGTGTTC+TGG | + | chr3.4:57931659-57931678 | MS.gene04439:CDS | 30.0% | |
| AACCAGAAAAAAAAAGCAAG+TGG | - | chr3.4:57931772-57931791 | None:intergenic | 30.0% | |
| AATACTAATCCAAATGGGAA+AGG | + | chr3.4:57932414-57932433 | MS.gene04439:intron | 30.0% | |
| AATTGTAGGATACCCAAATT+CGG | - | chr3.4:57932289-57932308 | None:intergenic | 30.0% | |
| ACAAGCAAATGAGATTGATA+TGG | + | chr3.4:57931411-57931430 | MS.gene04439:CDS | 30.0% | |
| ACACAAGCTATAGAAAATGA+TGG | + | chr3.4:57932922-57932941 | MS.gene04439:CDS | 30.0% | |
| ATCACTAAGGAAAATCATGA+AGG | + | chr3.4:57932541-57932560 | MS.gene04439:intron | 30.0% | |
| ATGCATATGAAGGAAAAATC+CGG | + | chr3.4:57931233-57931252 | MS.gene04439:CDS | 30.0% | |
| ATTACACTTTCACGTCAAAA+TGG | + | chr3.4:57931289-57931308 | MS.gene04439:CDS | 30.0% | |
| CAGAATGGAATTAAACATCT+TGG | + | chr3.4:57932004-57932023 | MS.gene04439:CDS | 30.0% | |
| CATCTTACAACTACAAGTAA+TGG | - | chr3.4:57932602-57932621 | None:intergenic | 30.0% | |
| GAAATTTGATACTATGGAAG+AGG | + | chr3.4:57931069-57931088 | MS.gene04439:CDS | 30.0% | |
| GGAATTAAACATCTTGGAAA+TGG | + | chr3.4:57932010-57932029 | MS.gene04439:CDS | 30.0% | |
| TAATGTTGGATATACAGAAG+TGG | + | chr3.4:57931501-57931520 | MS.gene04439:CDS | 30.0% | |
| TAGTTACACAACTATGATGA+TGG | + | chr3.4:57933295-57933314 | MS.gene04439:CDS | 30.0% | |
| TATACCTGTGAATTTCTTTG+AGG | - | chr3.4:57933108-57933127 | None:intergenic | 30.0% | |
| TCAAATTTCATTCCAAGTCT+TGG | - | chr3.4:57931058-57931077 | None:intergenic | 30.0% | |
| TCACCAATACTAATCCAAAT+GGG | + | chr3.4:57932409-57932428 | MS.gene04439:intron | 30.0% | |
| TGACATCTTCAAATGTTGAT+TGG | + | chr3.4:57931029-57931048 | MS.gene04439:CDS | 30.0% | |
| TTAACAACTCAAATGGTTGA+TGG | + | chr3.4:57933212-57933231 | MS.gene04439:CDS | 30.0% | |
| TTCACCAATACTAATCCAAA+TGG | + | chr3.4:57932408-57932427 | MS.gene04439:intron | 30.0% | |
| TTGTGAATATGTCATCACTA+AGG | + | chr3.4:57932528-57932547 | MS.gene04439:intron | 30.0% | |
| ! | ATTCGATTTCTAGACAACTT+AGG | - | chr3.4:57932781-57932800 | None:intergenic | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | + | chr3.4:57931697-57931716 | MS.gene04439:intron | 30.0% |
| ! | GTGTGATGCAAAAATGATTT+TGG | + | chr3.4:57931681-57931700 | MS.gene04439:CDS | 30.0% |
| ! | TATGTTTTCCTTCAAACTCA+TGG | - | chr3.4:57931327-57931346 | None:intergenic | 30.0% |
| ! | TGTTTCTAAGTTCATTAGAG+CGG | + | chr3.4:57932813-57932832 | MS.gene04439:CDS | 30.0% |
| !! | ATGTAGGTTTGTTTGTTGTA+AGG | + | chr3.4:57931183-57931202 | MS.gene04439:CDS | 30.0% |
| !! | TATAGAGGTACGATCATTTT+TGG | + | chr3.4:57931800-57931819 | MS.gene04439:intron | 30.0% |
| !! | TTTCCCATTTGGATTAGTAT+TGG | - | chr3.4:57932415-57932434 | None:intergenic | 30.0% |
| !!! | TGCAGCCCATTTTTTTTTAA+TGG | - | chr3.4:57932179-57932198 | None:intergenic | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCAT+TGG | + | chr3.4:57931714-57931733 | MS.gene04439:intron | 30.0% |
| AATCTTGCACAATGCCATAA+CGG | - | chr3.4:57932732-57932751 | None:intergenic | 35.0% | |
| AGGAAAATCATGAAGGATCT+TGG | + | chr3.4:57932548-57932567 | MS.gene04439:intron | 35.0% | |
| CATCTGATATGCATGAAAGA+AGG | - | chr3.4:57931629-57931648 | None:intergenic | 35.0% | |
| CGAAATGTTCAAGAAAGCAA+TGG | + | chr3.4:57932891-57932910 | MS.gene04439:CDS | 35.0% | |
| CTAGTTTGAGCATGTTTACT+TGG | - | chr3.4:57933075-57933094 | None:intergenic | 35.0% | |
| CTTCTTTCATGCATATCAGA+TGG | + | chr3.4:57931627-57931646 | MS.gene04439:CDS | 35.0% | |
| CTTGGAAATGGAATGAAGAA+AGG | + | chr3.4:57932022-57932041 | MS.gene04439:CDS | 35.0% | |
| GTATTTCCAACAGCAATTGT+TGG | + | chr3.4:57931594-57931613 | MS.gene04439:CDS | 35.0% | |
| TCTGATGCTATACAACCAAA+GGG | + | chr3.4:57932967-57932986 | MS.gene04439:CDS | 35.0% | |
| TGATATGCATGAAAGAAGGA+CGG | - | chr3.4:57931625-57931644 | None:intergenic | 35.0% | |
| TGTCTAGAAATCGAATGTTC+AGG | + | chr3.4:57932785-57932804 | MS.gene04439:CDS | 35.0% | |
| TTCTGATGCTATACAACCAA+AGG | + | chr3.4:57932966-57932985 | MS.gene04439:CDS | 35.0% | |
| ! | AGAAAAAGAAGCATGGTGTA+TGG | + | chr3.4:57931550-57931569 | MS.gene04439:CDS | 35.0% |
| ! | AGTTTGTCTGAAACCGAATT+TGG | + | chr3.4:57932273-57932292 | MS.gene04439:intron | 35.0% |
| ! | ATGGCATTGTGCAAGATTTT+AGG | + | chr3.4:57932734-57932753 | MS.gene04439:CDS | 35.0% |
| ! | CACTATTATCAAGAAGCATG+AGG | - | chr3.4:57932867-57932886 | None:intergenic | 35.0% |
| ! | GTTTGTCTGAAACCGAATTT+GGG | + | chr3.4:57932274-57932293 | MS.gene04439:intron | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | + | chr3.4:57931785-57931804 | MS.gene04439:intron | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+GGG | + | chr3.4:57932735-57932754 | MS.gene04439:CDS | 35.0% |
| ! | TTTGTTGTAAGGAAGGACTA+CGG | + | chr3.4:57931194-57931213 | MS.gene04439:CDS | 35.0% |
| !! | AAGCAGATTTTGAGAAAGCT+TGG | + | chr3.4:57932095-57932114 | MS.gene04439:CDS | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+AGG | + | chr3.4:57931187-57931206 | MS.gene04439:CDS | 35.0% |
| !! | TCTCTCGTTTTAGTAGATCA+TGG | - | chr3.4:57931351-57931370 | None:intergenic | 35.0% |
| !!! | GAACAATTTTGGCTTGCTTA+CGG | + | chr3.4:57931094-57931113 | MS.gene04439:CDS | 35.0% |
| !!! | GACCACTTGCTTTTTTTTTC+TGG | + | chr3.4:57931767-57931786 | MS.gene04439:intron | 35.0% |
| AAAGGAGGTTCTTTGCTAAG+AGG | + | chr3.4:57932040-57932059 | MS.gene04439:CDS | 40.0% | |
| AACTTATGAGCACACATGCA+GGG | + | chr3.4:57931470-57931489 | MS.gene04439:CDS | 40.0% | |
| AAGAAACATGCTCCTCCAAA+GGG | + | chr3.4:57932994-57933013 | MS.gene04439:CDS | 40.0% | |
| ACCAAAGTCAAGCAATGTCT+AGG | + | chr3.4:57931924-57931943 | MS.gene04439:CDS | 40.0% | |
| ATCTTGCACAATGCCATAAC+GGG | - | chr3.4:57932731-57932750 | None:intergenic | 40.0% | |
| ATTGATATGGCTGATGACTC+TGG | + | chr3.4:57931424-57931443 | MS.gene04439:CDS | 40.0% | |
| CCAAAGTCAAGCAATGTCTA+GGG | + | chr3.4:57931925-57931944 | MS.gene04439:CDS | 40.0% | |
| GAGTCAGATTCATGTCTAGT+TGG | - | chr3.4:57932505-57932524 | None:intergenic | 40.0% | |
| GATTCTCCAACAATTGCTGT+TGG | - | chr3.4:57931603-57931622 | None:intergenic | 40.0% | |
| GCATCAGAACTCACAAATGA+CGG | - | chr3.4:57932955-57932974 | None:intergenic | 40.0% | |
| GCATGTTTCTTGAATCCCTT+TGG | - | chr3.4:57932985-57933004 | None:intergenic | 40.0% | |
| GGAAATGGAATGAAGAAAGG+AGG | + | chr3.4:57932025-57932044 | MS.gene04439:CDS | 40.0% | |
| GTGTGTATACCTTTCCCATT+TGG | - | chr3.4:57932426-57932445 | None:intergenic | 40.0% | |
| GTTTGAGCATGTTTACTTGG+AGG | - | chr3.4:57933072-57933091 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | - | chr3.4:57932377-57932396 | None:intergenic | 40.0% | |
| TCTATGTGATCGAAGCATGT+GGG | - | chr3.4:57931377-57931396 | None:intergenic | 40.0% | |
| TTCACGTCAAAATGGAAAGC+TGG | + | chr3.4:57931297-57931316 | MS.gene04439:CDS | 40.0% | |
| TTCTATGTGATCGAAGCATG+TGG | - | chr3.4:57931378-57931397 | None:intergenic | 40.0% | |
| ! | ACCTGTGAATTTCTTTGAGG+TGG | - | chr3.4:57933105-57933124 | None:intergenic | 40.0% |
| ! | ATGGGCTGCATGTTATATGA+AGG | + | chr3.4:57932189-57932208 | MS.gene04439:intron | 40.0% |
| ! | ATTTTCATGAGGAACTGTCC+TGG | + | chr3.4:57933330-57933349 | MS.gene04439:intron | 40.0% |
| ! | GGCATTGTGCAAGATTTTAG+GGG | + | chr3.4:57932736-57932755 | MS.gene04439:CDS | 40.0% |
| ! | TAAGCAATCCGTTCTAGACT+CGG | - | chr3.4:57931263-57931282 | None:intergenic | 40.0% |
| ! | TGAGAAAGCTTGGTTTGACT+TGG | + | chr3.4:57932105-57932124 | MS.gene04439:CDS | 40.0% |
| ! | TGGAAGAGGCTGAACAATTT+TGG | + | chr3.4:57931083-57931102 | MS.gene04439:CDS | 40.0% |
| ! | TTATGTCGCTTAGTTCCCTT+TGG | - | chr3.4:57933012-57933031 | None:intergenic | 40.0% |
| !! | ATGAAGGAAGCATTGACACT+TGG | + | chr3.4:57932205-57932224 | MS.gene04439:intron | 40.0% |
| !! | CCTGTGAATTTCTTTGAGGT+GGG | - | chr3.4:57933104-57933123 | None:intergenic | 40.0% |
| !! | CTGTGAATTTCTTTGAGGTG+GGG | - | chr3.4:57933103-57933122 | None:intergenic | 40.0% |
| !! | TGTGCAAGATTTTAGGGGAA+AGG | + | chr3.4:57932741-57932760 | MS.gene04439:CDS | 40.0% |
| AAGTGGTCTATTGGCATCGT+TGG | - | chr3.4:57931755-57931774 | None:intergenic | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | + | chr3.4:57932371-57932390 | MS.gene04439:intron | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | - | chr3.4:57931979-57931998 | None:intergenic | 45.0% | |
| ATGGCTGATGACTCTGGATT+AGG | + | chr3.4:57931430-57931449 | MS.gene04439:CDS | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr3.4:57931469-57931488 | MS.gene04439:CDS | 45.0% | |
| CAAGAAACATGCTCCTCCAA+AGG | + | chr3.4:57932993-57933012 | MS.gene04439:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | - | chr3.4:57931968-57931987 | None:intergenic | 45.0% | |
| CCCACCTCAAAGAAATTCAC+AGG | + | chr3.4:57933101-57933120 | MS.gene04439:CDS | 45.0% | |
| CCCTAGACATTGCTTGACTT+TGG | - | chr3.4:57931928-57931947 | None:intergenic | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | + | chr3.4:57931972-57931991 | MS.gene04439:CDS | 45.0% | |
| CTGGTCATCCATGAGTTTGA+AGG | + | chr3.4:57931316-57931335 | MS.gene04439:CDS | 45.0% | |
| GGCATCGTTGGTACAATATG+TGG | - | chr3.4:57931743-57931762 | None:intergenic | 45.0% | |
| GTTGATTGGAAGCCAAGACT+TGG | + | chr3.4:57931043-57931062 | MS.gene04439:CDS | 45.0% | |
| TGGCTGATGACTCTGGATTA+GGG | + | chr3.4:57931431-57931450 | MS.gene04439:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | chr3.4:57931908-57931927 | None:intergenic | 45.0% | |
| ! | ACATGGCACTTGTTGCAGAA+TGG | + | chr3.4:57931989-57932008 | MS.gene04439:CDS | 45.0% |
| ! | CTTGCTTACGGTTTTCGTGA+GGG | + | chr3.4:57931106-57931125 | MS.gene04439:CDS | 45.0% |
| ! | TTTTCTTAGGCTGACGCTCA+AGG | - | chr3.4:57933041-57933060 | None:intergenic | 45.0% |
| !! | GCAAGATTTTAGGGGAAAGG+AGG | + | chr3.4:57932744-57932763 | MS.gene04439:CDS | 45.0% |
| !!! | GGAGGAGCACTTCTTTTCTT+AGG | - | chr3.4:57933054-57933073 | None:intergenic | 45.0% |
| AACATGTCCTCACGTGCTAG+CGG | - | chr3.4:57933272-57933291 | None:intergenic | 50.0% | |
| ACGGCGATGTATCGTCATGT+AGG | + | chr3.4:57931167-57931186 | MS.gene04439:CDS | 50.0% | |
| GCAGGGCATAGAGCTAATGT+TGG | + | chr3.4:57931487-57931506 | MS.gene04439:CDS | 50.0% | |
| TGGACAAGAGAAGCCCGTTA+TGG | + | chr3.4:57932715-57932734 | MS.gene04439:CDS | 50.0% | |
| ! | GCTTGCTTACGGTTTTCGTG+AGG | + | chr3.4:57931105-57931124 | MS.gene04439:CDS | 50.0% |
| ! | TACGGTTTTCGTGAGGGCTT+CGG | + | chr3.4:57931112-57931131 | MS.gene04439:CDS | 50.0% |
| ! | TGACTCTGGATTAGGGCAGA+AGG | + | chr3.4:57931438-57931457 | MS.gene04439:CDS | 50.0% |
| ! | TGTCGCTTAGTTCCCTTTGG+AGG | - | chr3.4:57933009-57933028 | None:intergenic | 50.0% |
| ACATGTCCTCACGTGCTAGC+GGG | - | chr3.4:57933271-57933290 | None:intergenic | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | + | chr3.4:57931959-57931978 | MS.gene04439:CDS | 55.0% | |
| AGCATGGTGTATGGCGACGC+TGG | + | chr3.4:57931559-57931578 | MS.gene04439:CDS | 60.0% | |
| ATGTCCTCACGTGCTAGCGG+GGG | - | chr3.4:57933269-57933288 | None:intergenic | 60.0% | |
| CATGTCCTCACGTGCTAGCG+GGG | - | chr3.4:57933270-57933289 | None:intergenic | 60.0% | |
| CCGGAGAGCCGAGTCTAGAA+CGG | + | chr3.4:57931252-57931271 | MS.gene04439:CDS | 60.0% | |
| GCTAGCGGGGGCTCATAAGT+TGG | - | chr3.4:57933257-57933276 | None:intergenic | 60.0% | |
| ! | AGCGGGGGCTCATAAGTTGG+AGG | - | chr3.4:57933254-57933273 | None:intergenic | 60.0% |
| ! | CCGTTCTAGACTCGGCTCTC+CGG | - | chr3.4:57931255-57931274 | None:intergenic | 60.0% |
| ! | GGGCTCATAAGTTGGAGGCG+CGG | - | chr3.4:57933249-57933268 | None:intergenic | 60.0% |
| TGAGCCCCCGCTAGCACGTG+AGG | + | chr3.4:57933262-57933281 | MS.gene04439:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 57931028 | 57933455 | 57931028 | ID=MS.gene04439 |
| chr3.4 | mRNA | 57931028 | 57933455 | 57931028 | ID=MS.gene04439.t1;Parent=MS.gene04439 |
| chr3.4 | exon | 57931028 | 57931710 | 57931028 | ID=MS.gene04439.t1.exon1;Parent=MS.gene04439.t1 |
| chr3.4 | CDS | 57931028 | 57931710 | 57931028 | ID=cds.MS.gene04439.t1;Parent=MS.gene04439.t1 |
| chr3.4 | exon | 57931805 | 57932126 | 57931805 | ID=MS.gene04439.t1.exon2;Parent=MS.gene04439.t1 |
| chr3.4 | CDS | 57931805 | 57932126 | 57931805 | ID=cds.MS.gene04439.t1;Parent=MS.gene04439.t1 |
| chr3.4 | exon | 57932685 | 57933122 | 57932685 | ID=MS.gene04439.t1.exon3;Parent=MS.gene04439.t1 |
| chr3.4 | CDS | 57932685 | 57933122 | 57932685 | ID=cds.MS.gene04439.t1;Parent=MS.gene04439.t1 |
| chr3.4 | exon | 57933203 | 57933316 | 57933203 | ID=MS.gene04439.t1.exon4;Parent=MS.gene04439.t1 |
| chr3.4 | CDS | 57933203 | 57933316 | 57933203 | ID=cds.MS.gene04439.t1;Parent=MS.gene04439.t1 |
| chr3.4 | exon | 57933414 | 57933455 | 57933414 | ID=MS.gene04439.t1.exon5;Parent=MS.gene04439.t1 |
| chr3.4 | CDS | 57933414 | 57933455 | 57933414 | ID=cds.MS.gene04439.t1;Parent=MS.gene04439.t1 |
| Gene Sequence |
| Protein sequence |
