AlfalfaGEDB | MS.gene044467

M. sativa cultivar XinJiangDaYe / MS.gene044467

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044467.t1	XP_013458014.1	96.4	470	17	0	1	470	1	470	8.40E-264	919.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044467.t1	Q94JW8	31.4	490	216	16	1	462	1	398	2.6e-35	151.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044467.t1	A0A072V1P8	96.4	470	17	0	1	470	1	470	6.1e-264	919.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene044467.t1	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044467.t1	MTR_4g109770	96.383	470	17	0	1	470	1	470	0.0	938
MS.gene044467.t1	MTR_2g461920	61.866	493	149	11	12	470	52	539	1.80e-171	493
MS.gene044467.t1	MTR_5g046670	49.315	219	88	8	56	264	174	379	1.15e-50	179
MS.gene044467.t1	MTR_3g099080	54.348	138	42	4	75	198	43	173	3.83e-38	143
MS.gene044467.t1	MTR_7g028740	35.331	317	179	8	75	382	26	325	8.64e-38	142
MS.gene044467.t1	MTR_8g096780	38.194	288	132	11	75	339	45	309	1.10e-36	139
MS.gene044467.t1	MTR_7g444860	70.000	80	24	0	117	196	143	222	6.29e-34	130
MS.gene044467.t1	MTR_7g092930	69.136	81	25	0	117	197	62	142	6.93e-34	130
MS.gene044467.t1	MTR_3g085180	50.769	130	57	2	72	198	115	240	8.23e-34	132
MS.gene044467.t1	MTR_1g053715	38.197	233	106	6	123	351	74	272	1.69e-33	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044467.t1	AT1G69170	64.286	126	32	3	75	197	83	198	7.65e-45	162
MS.gene044467.t1	AT5G50670	46.067	178	84	4	123	288	101	278	2.53e-37	140
MS.gene044467.t1	AT5G50670	46.067	178	84	4	123	288	101	278	2.53e-37	140
MS.gene044467.t1	AT5G50570	46.067	178	84	4	123	288	101	278	2.53e-37	140
MS.gene044467.t1	AT5G50570	46.067	178	84	4	123	288	101	278	2.53e-37	140
MS.gene044467.t1	AT1G27370	68.966	87	27	0	123	209	176	262	2.32e-36	137
MS.gene044467.t1	AT1G27370	68.966	87	27	0	123	209	176	262	5.48e-36	137
MS.gene044467.t1	AT1G27370	68.966	87	27	0	123	209	176	262	5.48e-36	137
MS.gene044467.t1	AT1G27370	68.966	87	27	0	123	209	176	262	5.48e-36	137
MS.gene044467.t1	AT1G27370	68.966	87	27	0	123	209	176	262	5.48e-36	137

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Find 96 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGCTGCTGGTGGCT+TGG	0.511710	8.1:-15917060	None:intergenic
AAACCACTTTGGAAGACCTC+TGG	0.529651	8.1:-15917089	None:intergenic
AAGTCATCTCAGTCCTATAT+TGG	0.441537	8.1:+15917577	MS.gene044467:CDS
AATAACCAAAGGGTTATCAA+AGG	0.561243	8.1:-15917456	None:intergenic
AATGAGAGAATCCCAACCAT+TGG	0.523865	8.1:-15915425	None:intergenic
AATGTTGCCACATCCACTAC+AGG	0.543311	8.1:+15917245	MS.gene044467:CDS
AATTCCCTTTGATAACCCTT+TGG	0.423487	8.1:+15917451	MS.gene044467:CDS
AATTCTGTGGTGGAATCCAA+TGG	0.627306	8.1:+15915409	MS.gene044467:CDS
ACTCCTATAGTCATTGTGAA+TGG	0.516933	8.1:+15915673	MS.gene044467:CDS
ACTGAACTTACTGCCTGTAG+TGG	0.586429	8.1:-15917258	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAACCAAAGGGTTATCAA+AGG	-	chr8.1:15917459-15917478	None:intergenic	30.0%
ACTGCATATTGTCAAGTTTA+TGG	+	chr8.1:15915580-15915599	MS.gene044467:CDS	30.0%
ATAAAAGTCTATCAGACACT+CGG	-	chr8.1:15917535-15917554	None:intergenic	30.0%
ATAACCAAAGGGTTATCAAA+GGG	-	chr8.1:15917458-15917477	None:intergenic	30.0%
ATAGTAATCAATAGGTGCAA+AGG	-	chr8.1:15916290-15916309	None:intergenic	30.0%
ATTCCATTCACAATGACTAT+AGG	-	chr8.1:15915679-15915698	None:intergenic	30.0%
ATTTCTAACTAGCTGGAATT+TGG	+	chr8.1:15915812-15915831	MS.gene044467:intron	30.0%
CATTCACAAAATCTGAATCA+TGG	-	chr8.1:15917652-15917671	None:intergenic	30.0%
CGAATGTTGAAAACAAAACA+AGG	-	chr8.1:15916259-15916278	None:intergenic	30.0%
GAAGTTTATGATTGACCATA+AGG	-	chr8.1:15916749-15916768	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	15915223	15917814	15915223	ID=MS.gene044467
chr8.1	mRNA	15915223	15917814	15915223	ID=MS.gene044467.t1;Parent=MS.gene044467
chr8.1	exon	15915223	15915728	15915223	ID=MS.gene044467.t1.exon1;Parent=MS.gene044467.t1
chr8.1	CDS	15915223	15915728	15915223	ID=cds.MS.gene044467.t1;Parent=MS.gene044467.t1
chr8.1	exon	15916427	15916560	15916427	ID=MS.gene044467.t1.exon2;Parent=MS.gene044467.t1
chr8.1	CDS	15916427	15916560	15916427	ID=cds.MS.gene044467.t1;Parent=MS.gene044467.t1
chr8.1	exon	15917042	15917814	15917042	ID=MS.gene044467.t1.exon3;Parent=MS.gene044467.t1
chr8.1	CDS	15917042	15917814	15917042	ID=cds.MS.gene044467.t1;Parent=MS.gene044467.t1

Gene Sequence

>MS.gene044467

ATGGAATCTTGGAGTTATATTTCTGAAGAAAAAGGTTCTGAAGAATTAGGCTTTTGTGAAATGTTTGGGAAACAATATTCAGATGATTTCAATTTCATTGGAAGTGTTCCAAGCAAGAAACTTGATGGTAAATTTGATGACCCAAGTGAGTTTTCTGTAAAAGGGGACACAAATTTCAAGCTTTCAAATTCTGTGGTGGAATCCAATGGTTGGGATTCTCTCATTGATTTGAAGCTAGGAAGATTTGATGATCATGGCAATGCTTCAATTGATGCGGCATTTTCCAAAGGAGCAGCACCTATTTTGTCTTCTTGTGAGTCTTCAACACCTCCCAAGAGAGTGAGAGTGCACTCAATGACTGCATATTGTCAAGTTTATGGATGTAACAAGGATCTTAGTTCTTGTAAGGACTACCATAAGAGGCATAAAGTTTGTGAGGTTCACTCCAAGACTCCTATAGTCATTGTGAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTGGTCCAATTTTCAAGTTTATTACTTCTTTCAATTCATTTTAGTGTAAAATTGATTCTATATTTGGTGGAATTGATTTTGCATTTCTAACTAGCTGGAATTTGGAATTGTTGCTTCTACAATTGATTTTTAGCCTCTAATTTATTGCTCAACCCTTTTTTATATAATTGTATCCAAACATTAACCTCTTTAGTCATAATCCATTTTACTAAATTAATTCATTCAAAATTAATTTTTGTTATTGCAGAACCAAAACCAGACTTAAACAAAATTAGTTTAGCATCACAATAGTTTTTGGTGTGTGTGCCTATTGGAATACTAGAACATGAATCTTTACTTGTTGAATTATGTCATGAGCAGGGTTTTAAATTATGGTTGTGTTGCAATAATTGAAATTAATATTGTAAATAATCACACATGTGGCTTATTTGATTTTAATTATCACTGCGAAATACATCGAAAACTTTAATGTGCCTAAATTGTGATCACATGTTTTTGTTTTAAACCTTGGTCTTGGGTTTTGAAGCCTTGTTTTGTTTTCAACATTCGTTGCTTACCCTTTGCACCTATTGATTACTATGCTTCTTAAATGAAGTTTTTCCTTCAGTCATGTTTCTACTTAGGATGATAAGCCTCAAATAAGAAGCTGTATAGTTATGATATATAGGTCTGGTGTAATGTTTAGCTTGTTATACAGGTTTCATTTGCTGTCTGAGTTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGGCGTTCACTCTACAAATTCTGGGAGACTGTTTCAGCCATTTGGTGGTAATAATATATATAATAAAGTTAGATCATGATTTAACTTTATTCTTTACACTCCTTTTTCTTTCACATTCATTTGTTGCCCTCTGCACCCATTAAATTACATTGATTTCTTTTGTTGTGGTTGATGTGAACCATAAGTTACTTATTCAACAATAGTTAATGGTTGAAGCAGAAATTAAGTATCTCCTTATGGTCAATCATAAACTTCCATCTGCTTTCTTACAGAATGACATCTAAATCTAATTAATTGTAGTTACCTAAATTCTGAGTTTCCATTCATATAACTAAGTTACTAACCTTAGTGTTGTACCATGTAAAATGCCGCTGACACGGATTTTCTGTCCCTCGTTAGAAATGGGAAAAAGATGAAGCATTGTGACTCTTATAATAATTGATTATCTGAAGCCAGTTTCCTATGCTTTTTTAGTCATCTGATATTAATATAAATGTATGATTTGATACGATCCTATGGTTCTTGCAGATATCAGATTCCAGGGAACCAAGCCACCAGCAGCATCTTTTCTCTATCCAGAGGTCTTCCAAAGTGGTTTCTGGAGACCTATGAAAGCAGAACATGAAGCTGGCTTTAGGCATTTTTCTTCTGTGCCTGTCACCAATGGACATCTTCAATCAAGATCTCCGTTTCCTTCGTACAACGAAAAACAATTTCCCTTTCTTCATGAAAATGTTGCCACATCCACTACAGGCAGTAAGTTCAGTGAAAACAATAGCCATTATGCGCATGCCATTGGCTACACCTCCTTAGGAAGCGAAGACTTCAATGTTTTTCATACCGCACCAAGCATTCAAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAGTCCAATAACACTTCAAGCCAGTCCTTGGAAATTCCCTTTGATAACCCTTTGGTTATTCCAAGCAGCCATAGCCATGTCTACAGCATAAGATCACAAGCGACTTCCTCAAGCCGAGTGTCTGATAGACTTTTATCCGAATTAAATCCTACAGATGGAAGTCATCTCAGTCCTATATTGGTACCAGACAATAATGATATCGTGAACTTTGAAATGGAAGACGGGATCTTCCATGATTCAGATTTTGTGAATGCGAAAGACTGCCTTTCTTGTGAAGATGATGCAACCATCAATTTACTACAACTGTCGTCGCAGCTTCAACGAGTTGAGCATCATAGACAATCATTGCAGGTGAAGAAAGAGTTTGATTCTTCTTGCACTCTCCGAATTACTTAA

Protein sequence

>MS.gene044467.t1

MESWSYISEEKGSEELGFCEMFGKQYSDDFNFIGSVPSKKLDGKFDDPSEFSVKGDTNFKLSNSVVESNGWDSLIDLKLGRFDDHGNASIDAAFSKGAAPILSSCESSTPPKRVRVHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQGVHSTNSGRLFQPFGDIRFQGTKPPAASFLYPEVFQSGFWRPMKAEHEAGFRHFSSVPVTNGHLQSRSPFPSYNEKQFPFLHENVATSTTGSKFSENNSHYAHAIGYTSLGSEDFNVFHTAPSIQGLSGISDSCALSLLSSQSNNTSSQSLEIPFDNPLVIPSSHSHVYSIRSQATSSSRVSDRLLSELNPTDGSHLSPILVPDNNDIVNFEMEDGIFHDSDFVNAKDCLSCEDDATINLLQLSSQLQRVEHHRQSLQVKKEFDSSCTLRIT