AlfalfaGEDB | MS.gene044468

M. sativa cultivar XinJiangDaYe / MS.gene044468

KEGG: K09264
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21 PF01486.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044468.t1	XP_013458015.1	88.8	249	13	3	1	241	1	242	1.60E-112	415.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044468.t1	Q7Y040	59.2	250	89	5	1	241	1	246	3.9e-64	246.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044468.t1	A0A072URR1	88.8	249	13	3	1	241	1	242	1.1e-112	415.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene044468.t1	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044468.t1	MTR_4g109810	88.755	249	13	3	1	241	1	242	2.59e-159	441
MS.gene044468.t1	MTR_6g015975	53.516	256	98	7	1	241	1	250	8.92e-81	243
MS.gene044468.t1	MTR_7g016600	67.045	176	57	1	1	175	1	176	2.70e-78	236
MS.gene044468.t1	MTR_8g097090	68.605	172	51	1	1	169	1	172	3.83e-76	230
MS.gene044468.t1	MTR_3g084980	57.798	218	79	4	1	213	1	210	4.69e-75	228
MS.gene044468.t1	MTR_7g075850	53.333	210	89	3	1	201	1	210	4.66e-62	195
MS.gene044468.t1	MTR_8g033270	53.241	216	89	6	1	211	1	209	1.44e-60	191
MS.gene044468.t1	MTR_4g109830	55.357	168	73	1	1	166	1	168	2.11e-56	180
MS.gene044468.t1	MTR_8g066260	55.294	170	70	3	1	166	1	168	2.45e-56	180
MS.gene044468.t1	MTR_5g046790	47.938	194	87	3	1	189	1	185	4.17e-54	173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044468.t1	AT2G03710	65.909	176	58	2	1	174	1	176	1.16e-76	232
MS.gene044468.t1	AT2G03710	65.909	176	58	2	1	174	1	176	1.29e-76	232
MS.gene044468.t1	AT5G15800	68.391	174	53	2	1	172	1	174	1.90e-76	231
MS.gene044468.t1	AT5G15800	68.391	174	53	2	1	172	1	174	2.94e-76	231
MS.gene044468.t1	AT3G02310	66.667	174	56	2	1	172	1	174	3.93e-75	228
MS.gene044468.t1	AT2G03710	65.698	172	57	2	1	170	1	172	5.41e-75	226
MS.gene044468.t1	AT1G24260	63.934	183	60	2	1	179	1	181	1.95e-74	226
MS.gene044468.t1	AT1G24260	63.587	184	60	2	1	179	1	182	2.29e-74	226
MS.gene044468.t1	AT3G02310	66.667	171	55	2	1	169	1	171	3.04e-74	224
MS.gene044468.t1	AT1G24260	66.250	160	49	1	1	155	1	160	2.18e-68	211

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Find 50 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAACGATCTGAGAAGTA+AGG	0.522802	8.1:-15853191	MS.gene044468:intron
AAATCTTACAACGTTCACAA+AGG	0.680204	8.1:-15854813	MS.gene044468:intron
AAATGCTTTAGGAACCTTCT+TGG	0.387253	8.1:-15854685	MS.gene044468:intron
AAATTAAACCTATCTGATTG+AGG	0.585591	8.1:+15852572	None:intergenic
AACATTTACCAGAGTATCAT+TGG	0.339966	8.1:+15854995	None:intergenic
AACCTATCTGATTGAGGAGG+AGG	0.487598	8.1:+15852578	None:intergenic
AACTAAGTGATCTTCACAAT+CGG	0.436840	8.1:-15853602	MS.gene044468:CDS
AAGAAATGGTGTACTCAAGA+AGG	0.552744	8.1:-15857699	MS.gene044468:CDS
AATGCTTTAGGAACCTTCTT+GGG	0.275687	8.1:-15854684	MS.gene044468:intron
ACAAGTTCCAGGTAGAATAT+TGG	0.334594	8.1:-15852651	MS.gene044468:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATCCACTTTGACAAG+AGG	+	chr8.1:15852711-15852730	None:intergenic	30.0%
AAATAACGATCTGAGAAGTA+AGG	-	chr8.1:15856475-15856494	MS.gene044468:intron	30.0%
AAATCTTACAACGTTCACAA+AGG	-	chr8.1:15854853-15854872	MS.gene044468:CDS	30.0%
AACTAAGTGATCTTCACAAT+CGG	-	chr8.1:15856064-15856083	MS.gene044468:intron	30.0%
ACCAAAATAGACATAGCTAA+AGG	-	chr8.1:15855294-15855313	MS.gene044468:intron	30.0%
ACCTTATAAGATGAACAAGT+GGG	-	chr8.1:15857548-15857567	MS.gene044468:intron	30.0%
ATATTCAAAGCTGAACCAAA+CGG	+	chr8.1:15855117-15855136	None:intergenic	30.0%
ATCCTTAGTTAAAACTGTTG+GGG	-	chr8.1:15853184-15853203	MS.gene044468:intron	30.0%
ATTAACATGAAAAGAAGGTC+TGG	+	chr8.1:15857647-15857666	None:intergenic	30.0%
CAAGTACAGTTATAATGAAC+TGG	-	chr8.1:15854633-15854652	MS.gene044468:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	15851896	15857792	15851896	ID=MS.gene044468
chr8.1	mRNA	15851896	15857792	15851896	ID=MS.gene044468.t1;Parent=MS.gene044468
chr8.1	exon	15857608	15857792	15857608	ID=MS.gene044468.t1.exon1;Parent=MS.gene044468.t1
chr8.1	CDS	15857608	15857792	15857608	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1
chr8.1	exon	15855004	15855082	15855004	ID=MS.gene044468.t1.exon2;Parent=MS.gene044468.t1
chr8.1	CDS	15855004	15855082	15855004	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1
chr8.1	exon	15854814	15854872	15854814	ID=MS.gene044468.t1.exon3;Parent=MS.gene044468.t1
chr8.1	CDS	15854814	15854872	15854814	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1
chr8.1	exon	15854597	15854696	15854597	ID=MS.gene044468.t1.exon4;Parent=MS.gene044468.t1
chr8.1	CDS	15854597	15854696	15854597	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1
chr8.1	exon	15853602	15853643	15853602	ID=MS.gene044468.t1.exon5;Parent=MS.gene044468.t1
chr8.1	CDS	15853602	15853643	15853602	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1
chr8.1	exon	15853192	15853233	15853192	ID=MS.gene044468.t1.exon6;Parent=MS.gene044468.t1
chr8.1	CDS	15853192	15853233	15853192	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1
chr8.1	exon	15852563	15852693	15852563	ID=MS.gene044468.t1.exon7;Parent=MS.gene044468.t1
chr8.1	CDS	15852563	15852693	15852563	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1
chr8.1	exon	15851896	15851983	15851896	ID=MS.gene044468.t1.exon8;Parent=MS.gene044468.t1
chr8.1	CDS	15851896	15851983	15851896	ID=cds.MS.gene044468.t1;Parent=MS.gene044468.t1

Gene Sequence

>MS.gene044468

ATGGGAAGAGGGAGAGTTGAACTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCTAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGGTGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGCAAACTCTATGAATTCAGTAGCACCTCCTGGTAACTCTTCTCTTATATCACTTCCTTTATGTATCTAATTATGTGTTTCTTTTGGTTGGAATATGTGGTGCAAACATATAGTTAATGTTTTCTCAGGTCTGAAAGCCTCTAGTTCCTGAGAAAGAGGACACAATTAATTTTGAGTTCAGCCGATAGGTAAATAAATATGACAAAAAATTATTTCGTCTAAGATTCTAATTCCGTCCCGATCAAACATATAGTTAAGATTTTATGCAAGATCTGTGCAATTAATTAGTGTTTTTGATCACCTCAAGTTAATAAATATTATACCTGATTTATTTTTTCACAAACAAAGGGAATTATTATTAATCAAAATTGAAAACAACTATTTACAGGTTGATTCAAAATATATTTATATGTACTGCCTAAACATGAGTTCTCAGCAGTTAACATATATGCAAGCTTTGGAAAAAGAGATCCATTTTGTCTCCAAATATATATATGTATGAATAATTTTTTTTCATTATATTCCAGATTTGTTTAAAGTGTAAAGTTCTGATCTTTAATTTGCATTCTGTTTAAATATGTTTCAGAGTAATTACATTAACAATACACTAATTTGTCTCATTTAATCTCTAACCCATGACATTGTGAAGATCTGAAACTCCTCTTGTCAAAGTGGATTTTTTTTTCTTTTTCTATTCAGTTTTTGTTTTGAAAAAGCTTTGCTGCTTTTATTTCAAGATAGGTTCTTAACTAGGGCAACATCATATTTCCAGAATGTAAAAAAGGGTAAAAGTAAAAAAAAATAAAAATTAATTCAAAGTTTGTTAAAAACATGTTTAAATTGGGTTAATGATAATTAAACCATGAACAAGCCCTAACAATCATCAGATATATATGTAATTTTGTTTTTGAATTTTGGCCTACGTACATACTACAAGCATCTGATTCATGATATAGAGTATTAGCAGACTAGGCTAGGAGTTACTGTTGTGATTTGGTGTGTGAGATGGGATGTTTGATTTGCAAACCTGTTTTTACTTTGCGTTTGCATTGCAATTTAAGGATGGTTCCAAGAGAGAAAGAGAAAAATGGTATCTTTTGCTTCTACAAAGCCTGTAAAGTGTAAATCAACATCTATCCTTAGTTAAAACTGTTGGGGAATAGCTAGTTTGATTCACAGCATATACCAAAAAATAAAACATTAATTGCTCGTTGACGTTTTCTATCTGCAGAAACATGTTATAGAAAACGATTGTTTGTGTCTTTTATTGAAGTAATAACTATTGGTTAATAACTACTCCTTCCGGTTACATTTATAAGCAAAAAACAACTTTTTAGGTACATTGAATAATTAATGTATCTGACCTATAATTATGACCAGATACATTAGTTATTGAATGAACATAAAAATATATTTTTTTTACTTATAAATGTGACCGGATGGAGTATTTAATAAAATTTAGTCCGAAGTGATTTAGTCGATTATTTCACATATGTCAATGTATAATTTTAACATTACTATCTATTAGTAAAAATTATAAAAAATTGATATTTTAAAAATATTTGTCGAAACAAATCCTACATTTTATATGTTATCATTTATCTTTTTATCTTAGTAAAAAATATGGTCAAAATATGTTATGAGAATAATATATATGGTCAAACTATATCACGTAATATGGGACGCAAAAAGTAATAATCAAACAAAAACATTGTCGTCCAACGAAGTTGCATGAATGTGTACTCGATTTGCAAAAAGGAATAGTGATAAATTTATACTTCGATCCTTGTAAGTGTATACACCTTGAAAGAGAGAAAAAAAAATACTACATATAATAAGTTGATGATGTGACGGAAATAATAAGAAGAGTTAGAAAGAAAACGATGTGTTGAATGAATGTTAGAATATAAAGAATATATTATTGTTGTTGTTTTTTTATAAGCGAAAAACTTTATTGAGGAGTATAAGAGGTTCTGAACGGAGAAGGCCTCAAGGTTATATATTTTTGTATATATGTATGCACCCACACAATATAAAACCATGATTATTTTCCTCTTTTATGGAGGTGAGAAGTGTTTGTAATTTTCATTTCAAAAGTATTCAACTTTATCACATTGAAAACTATTCAAAATTTTGATGAGACCAAACTAATACTTCAATTTTTAAGTAGAAGTTTATGGTCTTTCATTTATTATAATACTTACAATTGAGATACAATGACTTGTAATCAACTGGATCAAAACAATGAATTACAAGTGATATAAATTAATTTAGTTTTGAGGCACTAATATTGGTTTATCTTGTTTTTGTCAAACCTACACAAATTGAATCACCCCTAATCATTTCAGTTGTGTAATAGCAAGTCATACCATGAACTTCTATTTACATGTTGGAATACCCCCTATGTTTTGCTTATAAAAACATTTATTAAAGTTTGAAAACACTTATAACTATTCTACCCTAGAACACATTAGACACTTTTCCATGCAGAACCCATCTTGTTTCCCTTAGAAATCAATATCATTGATCTCATAGAGTCTTTCCTTGTATCATATAGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTATAATGAACTGGAGACCAACCAACCAGCCAATGATACTCTGGTAAATGTTCAACTATTACATGATATATTATAATTTTATTACTTTTTAATACTTATGTGGATAATGTTTTTCATAAATTTTATTAACTGATCTCTGCTTCAATGATGATGTAATAATGTGTCACCTGGCAGAATTACCAAGAATATTTGAGATTGAAAGCACATGTAGAAATCTTACAACGTTCACAAAGGTAATTGACACAAGACCCAATGAAAATTGCACTTGAATTCTGCTTACTTTGATCTGTTAAGGAAATACTAATAAGTAATAACTAATTTGAGTGGAGAAATGTTTGTAAATGCTTTAGGAACCTTCTTGGGGAAGATATTGCACAAATGAATACAGGTGAGCTCGAGCAACTTGAAAATCATTTGGAGGCAGCACTTAAGAATATAAGATCGACGGAGGTAACATTGCTCAACTTCGTGCCCGTTTGGTTCAGCTTTGAATATAATTGATTCTGAGAGAATTGATTCTGATAGAATTGATTCTGACAGAATTGATTCTGAGAGAATTGATTTATGTTTGGATACAATTATGTAGAATTGATTAAACAAAATGATTTATGTTTGGATGCAATTATGTAGAATTGCTTTTGAATGTATAATTACCAAAATAGACATAGCTAAAGGAGAATTGATAACGAATGAGAATTGATAAAGGGCAATAAAGTAAAATAACATGTTGTAATAATAAAATATACAAACCTATACACGTTGTTCAAGGAGAATTGATTCTAGAAAAGCTAGAAGCTAGGATTTGTAGCTTCATGGAGAATTGCTTTTGGAGGATAAAAGCAATTCTGAAAAGCTGAACCAAACACGTTGTTTTTGGCTAAAATTGCTTTTGACACTGTAGAGAATTGATTTTGGGCTAGAATTGCTTCTCAGAAGCCAAACCAAACAGGATCTTCAATTATCATTGTTTCTGAGTTAAAAGTGATGTTATTTGAACAACTAAAAATTGACAACCGTATTCAATAGCGTATAAAAATATACGACTTATTATTGTTGATGAGACTATACAACAACAACAATCAATTGTTGATGAAACTAATTGATTAAACTTTGAGAGAGAGAAAAAAAGTAATTAAAAAACTAAATGGTACATGTGTAAGCGTGTTGAACAATTAAAAAGTTGTCAAAATTATATCATTTGCTAAATTAATTAGTTTGTAATTCTATCATTCTCTACTTTTTTTTAATAAGTTAATAAGCCATACATACAATATGATTGCAAAACAAGTTTTTTTTATACAATTTGGACTAGCTGTGTTCTTTCTCTTTTTACAAATGCTTTTAGATAAAAAAAATAGTTATTTCATTTTTTGGATAGATTTTAACATGTTTGAATTTTGCAGACTCAATTCATGCTTGATCAACTAAGTGATCTTCACAATCGGGTATGCGTTTATTTCTTTTGTGAAAAGTGTTACCAACACACATTTTAACATACATTTTTCAATACACGCTCTTTAATCGGGTTAAAATCCACGTCGGTCCCATCAAAATTATGTGAGTCTCACATAAATTTGATAAAACTCACATAAATTTTAATAAATAATACGAGTGTTGAAAAGTGTGTTAAAGAATGTGCTGCTACCAATATTCTTCTTTTTTTTACTCGTCGAAAGCGAAAAAATTGTTGACGACTATGTAGACCACGACCAGGATATCGTTAACCAGTCGCAGCCAAATGTTTAAACAACACCTTTTTTTTTTCTTTTTACAAATGATTTGTGTAACCTTGACTTATACCAAATCAATGCAGGAAACGGTGCTTGTTGAAACAAATAACGATCTGAGAAGTAAGGTAAAAATTATTTCGAAACCAAATACAGATCATATGTTTTCCATTGAAATTTAGGTACAAGTTGGTTTTTCTTATGGTAATTTAGGTATAAGTTGCAGTAATGCATAACTATTGTAAGTATAGTTCTCTATCAACGAATTTTTTTAAAAAAATCTTATTTGCTTGGATTAGTATTCTTACTTTGGACATGGACTCTCACTCTTAAATGGACCCACCATATGTTTATAGACCTAAAACAAACTTTTAAATTGATGACTTTATGAAGTATGAATACATGAATGAAAAATTATGGTAAGATGAATTCAATACTAAGGTCTAAGTATGTATGTCACTTTTTAATACTATTTGCACATTGCTGAAAATTTGTTTTAATGTCTTACCTATCAGTATGACATTATTTAAGACTATGTTTGGGTCAGTATTGCTGTATATATAATTTAAGAAGAATACTATAAAACAACAAATTAAGCTTTTGATGAAAATTCTATGTTGAAACAGTTAGAAGAAACCGATAACTTACAAGTTCCAGGTAGAATATTGGCTTTGGAAGCTGGTGGATCTAATTTCCATCATGCACCCTTTCCTTCTCCTCCTCCTCCTCAATCAGATAGGTTTAATTTCTCCACCATGTGGGAGTGAATTCCAACTTGCAAATTGGGTAAAGTCAAACTATTCATGAAATTGTCTAATATCATTTTTACCAAATATAAGGTTTTATGAGTTTATTTATTTATTTATTTATTTTTACAATTTTATGAGTTTAATCTGTATACAACTTAAGTTATATAAATCACAATTAATCATACACTTTTTTTTTTGAGGGAATTAATCATACACTTTAAAAGTAGTTATGAACAAAGTCAAACGTTTTTAATGATTTAACGGTTATGATTGATTGACATTTACAATAACAACAACAACCAAGTCTTATCCCACTAAGTGGGGTCAGCTACATAGATCAATTGACGTTGTATGTAAATTAAATTTGGTGAAATGTTTTTATTTTTCTTCTTTTCATGTTTTTTGTCAGGTAGCCTAGTGGCTAGAATTCACCTTATAAGATGAACAAGTGGGATGGGATGTCCGGGGTTCGAACCCCAGCCACCGCATATAATAACGCATTGTCCTACCAACTGAGTTATGCTCACCAGACCTTCTTTTCATGTTAATATGGCTAATAGTAAATGTTTTATTGATTTTATATGCAGCTACAATCCGATGGGTTCTGCTGATGTAAACGTTGGAGCGTCATCCTTGAGAATGAATGGATTCGACGCTATGACGTGGATGCTCTAA

Protein sequence

>MS.gene044468.t1

MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCGAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYNELETNQPANDTLNYQEYLRLKAHVEILQRSQRNLLGEDIAQMNTGELEQLENHLEAALKNIRSTETQFMLDQLSDLHNRETVLVETNNDLRSKLEETDNLQVPGRILALEAGGSNFHHAPFPSPPPPQSDRFNFSTIYNPMGSADVNVGASSLRMNGFDAMTWML