AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044479

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044479.t1 MTR_4g109980 96.914 324 6 2 1 324 1 320 0.0 639
MS.gene044479.t1 MTR_2g059540 63.000 100 37 0 40 139 31 130 5.07e-34 124
MS.gene044479.t1 MTR_2g096740 63.043 92 25 1 40 131 62 144 6.32e-34 126
MS.gene044479.t1 MTR_2g096740 63.043 92 25 1 40 131 77 159 9.25e-34 126
MS.gene044479.t1 MTR_4g088580 59.048 105 41 2 20 123 34 137 2.17e-33 127
MS.gene044479.t1 MTR_8g479350 82.759 58 10 0 36 93 64 121 1.63e-31 121
MS.gene044479.t1 MTR_8g015840 80.000 65 12 1 37 100 17 81 1.88e-31 117
MS.gene044479.t1 MTR_4g063780 67.606 71 23 0 37 107 72 142 3.61e-31 120
MS.gene044479.t1 MTR_4g022370 40.361 166 78 3 19 170 54 212 1.47e-30 119
MS.gene044479.t1 MTR_7g059400 47.581 124 47 2 27 150 63 168 2.14e-30 118
MS.gene044479.t1 MTR_8g079060 60.759 79 31 0 37 115 26 104 7.43e-30 114
MS.gene044479.t1 MTR_8g068210 70.833 72 18 1 39 107 31 102 8.38e-30 116
MS.gene044479.t1 MTR_7g024670 82.456 57 10 0 41 97 78 134 1.55e-29 116
MS.gene044479.t1 MTR_5g031440 83.333 54 9 0 37 90 40 93 2.04e-29 115
MS.gene044479.t1 MTR_4g461080 70.833 72 15 1 20 91 15 80 2.16e-29 114
MS.gene044479.t1 MTR_3g091820 64.865 74 20 1 23 96 32 99 2.51e-29 114
MS.gene044479.t1 MTR_3g077750 56.000 100 38 1 23 122 50 143 8.02e-29 113
MS.gene044479.t1 MTR_2g093220 66.667 81 24 1 37 114 37 117 8.59e-29 112
MS.gene044479.t1 MTR_2g014060 86.275 51 7 0 41 91 26 76 2.59e-28 112
MS.gene044479.t1 MTR_8g027295 53.191 94 36 1 21 114 13 98 4.19e-28 110
MS.gene044479.t1 MTR_3g090430 74.194 62 16 0 42 103 53 114 7.76e-28 110
MS.gene044479.t1 MTR_1g056810 77.966 59 13 0 36 94 8 66 5.28e-27 107
MS.gene044479.t1 MTR_1g077600 72.414 58 16 0 37 94 40 97 6.85e-27 107
MS.gene044479.t1 MTR_1g077600 72.414 58 16 0 37 94 40 97 7.68e-27 107
MS.gene044479.t1 MTR_7g010950 71.186 59 17 0 38 96 133 191 2.16e-26 108
MS.gene044479.t1 MTR_2g013370 70.769 65 18 1 30 94 36 99 3.00e-26 105
MS.gene044479.t1 MTR_8g044220 68.966 58 18 0 38 95 116 173 3.89e-26 107
MS.gene044479.t1 MTR_2g014170 84.000 50 8 0 39 88 44 93 6.29e-26 105
MS.gene044479.t1 MTR_2g016030 68.421 57 18 0 37 93 44 100 1.20e-25 100
MS.gene044479.t1 MTR_7g086780 46.316 95 51 0 38 132 97 191 1.47e-25 106
MS.gene044479.t1 MTR_6g012450 67.797 59 19 0 38 96 134 192 2.54e-25 106
MS.gene044479.t1 MTR_4g082060 67.857 56 18 0 38 93 120 175 1.88e-24 103
MS.gene044479.t1 MTR_3g435480 58.904 73 23 1 31 96 120 192 3.46e-24 102
MS.gene044479.t1 MTR_5g041420 67.797 59 19 0 38 96 136 194 5.84e-24 100
MS.gene044479.t1 MTR_6g027460 46.000 100 50 1 38 137 94 189 6.49e-24 100
MS.gene044479.t1 MTR_6g027450 63.158 57 21 0 38 94 87 143 3.82e-23 98.2
MS.gene044479.t1 MTR_5g041530 63.077 65 23 1 30 93 129 193 4.55e-23 98.6
MS.gene044479.t1 MTR_5g041380 66.102 59 20 0 38 96 125 183 7.31e-23 97.8
MS.gene044479.t1 MTR_5g041400 66.102 59 20 0 38 96 117 175 1.46e-22 97.1
MS.gene044479.t1 MTR_4g089095 35.714 168 79 3 38 203 48 188 4.07e-16 77.8
MS.gene044479.t1 MTR_4g089095 35.714 168 79 3 38 203 14 154 5.12e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044479.t1 AT5G60850 43.210 324 112 13 23 324 34 307 1.14e-54 181
MS.gene044479.t1 AT1G51700 76.712 73 16 1 37 108 30 102 2.11e-33 122
MS.gene044479.t1 AT5G65590 75.758 66 16 0 36 101 37 102 1.94e-32 123
MS.gene044479.t1 AT5G60200 67.949 78 19 1 39 116 54 125 3.24e-32 120
MS.gene044479.t1 AT5G66940 56.989 93 34 1 36 122 28 120 1.88e-31 118
MS.gene044479.t1 AT3G45610 66.234 77 19 1 37 113 37 106 4.61e-31 117
MS.gene044479.t1 AT2G37590 68.116 69 22 0 27 95 76 144 1.08e-30 118
MS.gene044479.t1 AT2G28510 42.778 180 79 5 35 202 43 210 3.17e-30 116
MS.gene044479.t1 AT1G07640 79.310 58 12 0 40 97 21 78 3.68e-30 115
MS.gene044479.t1 AT1G07640 79.310 58 12 0 40 97 77 134 5.30e-30 117
MS.gene044479.t1 AT1G07640 79.310 58 12 0 40 97 85 142 6.64e-30 116
MS.gene044479.t1 AT2G28810 83.019 53 9 0 39 91 76 128 1.38e-29 115
MS.gene044479.t1 AT3G61850 65.000 80 20 1 24 103 54 125 1.42e-29 114
MS.gene044479.t1 AT3G61850 65.000 80 20 1 24 103 54 125 1.42e-29 114
MS.gene044479.t1 AT4G38000 63.750 80 20 2 20 90 12 91 1.48e-29 113
MS.gene044479.t1 AT3G61850 65.000 80 20 1 24 103 66 137 1.52e-29 114
MS.gene044479.t1 AT3G52440 71.053 76 17 2 27 102 14 84 1.53e-29 113
MS.gene044479.t1 AT3G61850 65.000 80 20 1 24 103 54 125 2.10e-29 114
MS.gene044479.t1 AT2G28810 83.019 53 9 0 39 91 93 145 2.13e-29 115
MS.gene044479.t1 AT3G52440 71.053 76 17 2 27 102 33 103 2.24e-29 113
MS.gene044479.t1 AT3G61850 65.000 80 20 1 24 103 66 137 2.42e-29 115
MS.gene044479.t1 AT3G21270 88.679 53 6 0 40 92 29 81 3.22e-29 111
MS.gene044479.t1 AT3G50410 77.049 61 14 0 37 97 27 87 3.44e-29 112
MS.gene044479.t1 AT3G55370 69.118 68 21 0 35 102 71 138 4.81e-29 114
MS.gene044479.t1 AT3G55370 69.118 68 21 0 35 102 71 138 5.90e-29 114
MS.gene044479.t1 AT3G55370 69.118 68 21 0 35 102 116 183 8.81e-29 114
MS.gene044479.t1 AT1G28310 77.966 59 13 0 40 98 27 85 8.87e-29 113
MS.gene044479.t1 AT5G02460 75.000 60 15 0 35 94 90 149 1.02e-28 114
MS.gene044479.t1 AT4G21050 55.882 102 38 2 42 137 26 126 1.05e-28 110
MS.gene044479.t1 AT1G28310 77.966 59 13 0 40 98 51 109 1.48e-28 113
MS.gene044479.t1 AT4G24060 63.514 74 21 1 21 94 40 107 3.99e-28 112
MS.gene044479.t1 AT1G21340 80.357 56 11 0 42 97 40 95 8.64e-28 109
MS.gene044479.t1 AT5G62940 69.565 69 15 1 22 90 61 123 8.84e-28 111
MS.gene044479.t1 AT4G00940 64.103 78 28 0 37 114 65 142 3.42e-26 105
MS.gene044479.t1 AT4G00940 64.103 78 28 0 37 114 65 142 3.42e-26 105
MS.gene044479.t1 AT4G00940 64.103 78 28 0 37 114 65 142 3.42e-26 105
MS.gene044479.t1 AT1G29160 71.429 56 16 0 38 93 60 115 2.04e-25 100
MS.gene044479.t1 AT2G34140 71.429 56 16 0 38 93 56 111 2.19e-25 100
MS.gene044479.t1 AT3G47500 69.492 59 18 0 38 96 108 166 2.42e-25 105
MS.gene044479.t1 AT1G64620 61.194 67 20 1 23 89 38 98 4.37e-25 103
MS.gene044479.t1 AT2G46590 65.152 66 15 1 22 87 58 115 5.89e-25 103
MS.gene044479.t1 AT2G46590 65.152 66 15 1 22 87 70 127 7.03e-25 103
MS.gene044479.t1 AT5G39660 69.643 56 17 0 38 93 136 191 1.18e-24 103
MS.gene044479.t1 AT5G39660 69.643 56 17 0 38 93 136 191 1.18e-24 103
MS.gene044479.t1 AT5G39660 69.643 56 17 0 38 93 136 191 1.18e-24 103
MS.gene044479.t1 AT5G62430 64.407 59 21 0 38 96 52 110 3.88e-24 100
MS.gene044479.t1 AT1G69570 69.643 56 17 0 38 93 130 185 5.96e-24 101
MS.gene044479.t1 AT1G47655 74.510 51 13 0 38 88 27 77 6.22e-24 97.8
MS.gene044479.t1 AT4G21040 42.069 145 67 3 42 169 27 171 3.88e-23 96.3
MS.gene044479.t1 AT1G26790 66.071 56 19 0 38 93 109 164 4.07e-23 98.6
MS.gene044479.t1 AT4G21080 68.966 58 17 1 42 98 27 84 1.39e-21 92.4
MS.gene044479.t1 AT4G21030 55.882 68 27 1 42 109 23 87 4.51e-16 75.9

Find 97 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAGAGCGTTTGGATTTC+CGG 0.179446 8.1:-15762831 None:intergenic
TTCTGGTCCTGGATCGTTGC+TGG 0.251043 8.1:+15763326 MS.gene044479:CDS
GTTATTGTAGTAACAGAATT+TGG 0.266870 8.1:-15762713 None:intergenic
TCCCCGTCGGTGGCGGTTGC+CGG 0.275837 8.1:+15762812 MS.gene044479:CDS
GGTTCAGGTTATTGTTGTTT+TGG 0.289348 8.1:-15762651 None:intergenic
GCTGGTGCTGGTGCTGGTGG+GGG 0.303630 8.1:+15763297 MS.gene044479:CDS
GAGGACATTTCATGACTTCT+TGG 0.303639 8.1:-15762672 None:intergenic
AAAACAAGCAACGGTGGATT+TGG 0.307667 8.1:+15763381 MS.gene044479:CDS
GAGACATTGCCGTTTGGTTT+TGG 0.311028 8.1:+15763120 MS.gene044479:CDS
CGGTAACGCTCATCAGCTTT+TGG 0.328939 8.1:-15763218 None:intergenic
ACGGTAATGTTAACGTTAAC+GGG 0.351619 8.1:+15763163 MS.gene044479:CDS
CAAAAGCTGATGAGCGTTAC+CGG 0.354847 8.1:+15763219 MS.gene044479:CDS
ACACCGTTGATCATGGTTAC+TGG 0.364180 8.1:+15763463 MS.gene044479:CDS
TGCTGGTGCTGGTGCTGGTG+GGG 0.376111 8.1:+15763296 MS.gene044479:CDS
GTGCTGGTGCTGGTGCTGGT+GGG 0.378566 8.1:+15763295 MS.gene044479:CDS
GACTTATTCTCCGGCGCCTC+CGG 0.380062 8.1:-15762904 None:intergenic
GGTGCTGGTGCTGGTGCTGG+TGG 0.385048 8.1:+15763294 MS.gene044479:CDS
GTAACAGAATTTGGTGTTGA+TGG 0.387408 8.1:-15762704 None:intergenic
TTCTTCTCCGGCGGTGGTGT+TGG 0.390782 8.1:-15762994 None:intergenic
TAACCATGATCAACGGTGTT+AGG 0.392627 8.1:-15763459 None:intergenic
AACGGTAATGTTAACGTTAA+CGG 0.394532 8.1:+15763162 MS.gene044479:CDS
ATAGGTGCTGGTGCTGGTGC+TGG 0.398553 8.1:+15763291 MS.gene044479:CDS
GGCGCCTCCGGTGGAGTTGT+CGG 0.413936 8.1:-15762892 None:intergenic
CAACGGTGGATTTGGATCGT+TGG 0.423030 8.1:+15763389 MS.gene044479:CDS
ATTTCATGACTTCTTGGTTC+AGG 0.424145 8.1:-15762666 None:intergenic
CACCGCAGCGGCGGTGAGGC+TGG 0.433116 8.1:-15762953 None:intergenic
CGCCACCGACGGGGACGTTA+CGG 0.435705 8.1:-15762804 None:intergenic
AAACGGCAATGTCTCGTTAG+AGG 0.437377 8.1:-15763112 None:intergenic
GGTTCCTCCGGCGCCTCCGA+TGG 0.440934 8.1:-15762584 None:intergenic
GCCTCCGCCACCGAAGAATC+TGG 0.443448 8.1:-15762605 None:intergenic
AGACGCATTGAAGTTGTTAC+CGG 0.443650 8.1:+15763263 MS.gene044479:CDS
GTGGATTTGGATCGTTGGAT+TGG 0.444872 8.1:+15763394 MS.gene044479:CDS
CTTCCTAACACCGTTGATCA+TGG 0.449712 8.1:+15763456 MS.gene044479:CDS
TCGGTGGCGGAGGCGGTGAT+CGG 0.459343 8.1:+15762614 MS.gene044479:CDS
TTCCGGCAACCGCCACCGAC+GGG 0.461760 8.1:-15762814 None:intergenic
CAGCCTCACCGCCGCTGCGG+TGG 0.464633 8.1:+15762954 MS.gene044479:CDS
AGATTCTTCGGTGGCGGAGG+CGG 0.473172 8.1:+15762607 MS.gene044479:CDS
TCACACTCAATGGTCTGATC+AGG 0.473669 8.1:+15763488 MS.gene044479:CDS
GCCGGAGGAACCAGATTCTT+CGG 0.474219 8.1:+15762595 MS.gene044479:CDS
AAGTTGTTACCGGAGAATAT+AGG 0.476958 8.1:+15763273 MS.gene044479:CDS
TAACGTTAACATTACCGTTA+CGG 0.477277 8.1:-15763158 None:intergenic
GATTCACTTGAACAAGGAAC+AGG 0.481996 8.1:+15763039 MS.gene044479:CDS
CGTAACGTCCCCGTCGGTGG+CGG 0.482120 8.1:+15762805 MS.gene044479:CDS
GGAACTCTCACTGCTGGAAT+GGG 0.482309 8.1:-15762932 None:intergenic
TGGAACTCTCACTGCTGGAA+TGG 0.493236 8.1:-15762933 None:intergenic
TCTAACGAGACATTGCCGTT+TGG 0.499608 8.1:+15763114 MS.gene044479:CDS
ACCAGATTCTTCGGTGGCGG+AGG 0.500004 8.1:+15762604 MS.gene044479:CDS
GACAACTCCACCGGAGGCGC+CGG 0.504458 8.1:+15762894 MS.gene044479:CDS
ACCGAAGAATCTGGTTCCTC+CGG 0.507560 8.1:-15762596 None:intergenic
CCATGGTCCAGCAACGATCC+AGG 0.515665 8.1:-15763333 None:intergenic
CAACATTCCATCGGAGGCGC+CGG 0.516567 8.1:+15762577 MS.gene044479:CDS
GAGGCTGGAACTCTCACTGC+TGG 0.519133 8.1:-15762938 None:intergenic
TTTCCGGCAACCGCCACCGA+CGG 0.522246 8.1:-15762815 None:intergenic
TGCCGACGTTACTGGACTAA+AGG 0.527907 8.1:+15762772 MS.gene044479:CDS
CTCCGTAACGTCCCCGTCGG+TGG 0.530524 8.1:+15762802 MS.gene044479:CDS
TTATTCTCCGGCGCCTCCGG+TGG 0.532938 8.1:-15762901 None:intergenic
CAGCCACCGCAGCGGCGGTG+AGG 0.533594 8.1:-15762957 None:intergenic
ATGATGCGTCGTCGTTTCAG+TGG 0.549551 8.1:+15763190 MS.gene044479:CDS
TCGTTGGATTGGAATGGTGA+TGG 0.550292 8.1:+15763405 MS.gene044479:CDS
CATTCCATCGGAGGCGCCGG+AGG 0.561089 8.1:+15762580 MS.gene044479:CDS
TTTGGATCGTTGGATTGGAA+TGG 0.568406 8.1:+15763399 MS.gene044479:CDS
TGGGAGTTAGACTTATTCTC+CGG 0.569296 8.1:-15762913 None:intergenic
TTCAGAACCAACACCACCGC+CGG 0.573448 8.1:+15762987 MS.gene044479:CDS
GTTACTGGAATCACACTCAA+TGG 0.574806 8.1:+15763478 MS.gene044479:CDS
TTACCGGAGAATATAGGTGC+TGG 0.577924 8.1:+15763279 MS.gene044479:CDS
CGGTAAAACAGTGGAATCTG+AGG 0.581795 8.1:-15762872 None:intergenic
GTCCTCCGTAACGTCCCCGT+CGG 0.588295 8.1:+15762799 MS.gene044479:CDS
TGTTTCAGCCACCGCAGCGG+CGG 0.589914 8.1:-15762962 None:intergenic
GAGAATATAGGTGCTGGTGC+TGG 0.591108 8.1:+15763285 MS.gene044479:CDS
TTCCAGCCTCACCGCCGCTG+CGG 0.594936 8.1:+15762951 MS.gene044479:CDS
GGAACCAGATTCTTCGGTGG+CGG 0.595461 8.1:+15762601 MS.gene044479:CDS
GCACCAGCACCTATATTCTC+CGG 0.599864 8.1:-15763282 None:intergenic
AGAAGTGACGAGGCTGAGAG+AGG 0.604907 8.1:-15762741 None:intergenic
GAACAAGGAACAGGTGATTG+TGG 0.605175 8.1:+15763048 MS.gene044479:CDS
TCCGGCAACCGCCACCGACG+GGG 0.606442 8.1:-15762813 None:intergenic
TTACCGATACCAAAACCAAA+CGG 0.611130 8.1:-15763129 None:intergenic
CTGCAGAGTAAAACAAGCAA+CGG 0.614794 8.1:+15763372 MS.gene044479:CDS
CCTGGATCGTTGCTGGACCA+TGG 0.617986 8.1:+15763333 MS.gene044479:CDS
GAGAATGATTCACTTGAACA+AGG 0.621864 8.1:+15763033 MS.gene044479:CDS
CAGAGTAAAACAAGCAACGG+TGG 0.633363 8.1:+15763375 MS.gene044479:CDS
GAGATACAACATTCCATCGG+AGG 0.634291 8.1:+15762571 MS.gene044479:CDS
GCAAAGAGAAATCAATACCA+TGG 0.638840 8.1:-15763350 None:intergenic
AACTGTTTCAGCCACCGCAG+CGG 0.652527 8.1:-15762965 None:intergenic
ATCGGTAACGATAACCGTAA+CGG 0.654058 8.1:+15763144 MS.gene044479:CDS
TAAAACAGTGGAATCTGAGG+AGG 0.660488 8.1:-15762869 None:intergenic
TTTACCGACAACTCCACCGG+AGG 0.660654 8.1:+15762888 MS.gene044479:CDS
CGCCTTTAGTCCAGTAACGT+CGG 0.661444 8.1:-15762774 None:intergenic
GATGGTGGTGCAGATCATCA+AGG 0.664273 8.1:+15763423 MS.gene044479:CDS
CACCGACGGGGACGTTACGG+AGG 0.667570 8.1:-15762801 None:intergenic
CAGGAGATACAACATTCCAT+CGG 0.667929 8.1:+15762568 MS.gene044479:CDS
TGGAGTTGTCGGTAAAACAG+TGG 0.668985 8.1:-15762881 None:intergenic
GGAGGAACCAGATTCTTCGG+TGG 0.672184 8.1:+15762598 MS.gene044479:CDS
ATTCCAGTAACCATGATCAA+CGG 0.674918 8.1:-15763466 None:intergenic
CCGGAGAAGAAAATCAACAA+AGG 0.680379 8.1:+15763006 MS.gene044479:CDS
TTGGATTGGAATGGTGATGG+TGG 0.685796 8.1:+15763408 MS.gene044479:CDS
CGACGTTACTGGACTAAAGG+CGG 0.694270 8.1:+15762775 MS.gene044479:CDS
GTGTTGATGGAGTCACAGCG+AGG 0.726737 8.1:-15762691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GTTATTGTAGTAACAGAATT+TGG - chr8.1:15762716-15762735 None:intergenic 25.0%
AACGGTAATGTTAACGTTAA+CGG + chr8.1:15763162-15763181 MS.gene044479:CDS 30.0%
TAACGTTAACATTACCGTTA+CGG - chr8.1:15763161-15763180 None:intergenic 30.0%
!!! AGGTTATTGTTGTTTTGGTT+GGG - chr8.1:15762649-15762668 None:intergenic 30.0%
AAGTTGTTACCGGAGAATAT+AGG + chr8.1:15763273-15763292 MS.gene044479:CDS 35.0%
ACGGTAATGTTAACGTTAAC+GGG + chr8.1:15763163-15763182 MS.gene044479:CDS 35.0%
ATTCCAGTAACCATGATCAA+CGG - chr8.1:15763469-15763488 None:intergenic 35.0%
ATTTCATGACTTCTTGGTTC+AGG - chr8.1:15762669-15762688 None:intergenic 35.0%
GAGAATGATTCACTTGAACA+AGG + chr8.1:15763033-15763052 MS.gene044479:CDS 35.0%
GCAAAGAGAAATCAATACCA+TGG - chr8.1:15763353-15763372 None:intergenic 35.0%
TTACCGATACCAAAACCAAA+CGG - chr8.1:15763132-15763151 None:intergenic 35.0%
!! GTAACAGAATTTGGTGTTGA+TGG - chr8.1:15762707-15762726 None:intergenic 35.0%
!! TTCATGATGTTTTTGATCGC+CGG - chr8.1:15763241-15763260 None:intergenic 35.0%
!!! CAGGTTATTGTTGTTTTGGT+TGG - chr8.1:15762650-15762669 None:intergenic 35.0%
!!! CCTTTGTTGATTTTCTTCTC+CGG - chr8.1:15763009-15763028 None:intergenic 35.0%
!!! GGTTCAGGTTATTGTTGTTT+TGG - chr8.1:15762654-15762673 None:intergenic 35.0%
!!! TCTGAGGAGGAAGATTTTTT+TGG - chr8.1:15762859-15762878 None:intergenic 35.0%
AGACGCATTGAAGTTGTTAC+CGG + chr8.1:15763263-15763282 MS.gene044479:CDS 40.0%
ATCGGTAACGATAACCGTAA+CGG + chr8.1:15763144-15763163 MS.gene044479:CDS 40.0%
CAGGAGATACAACATTCCAT+CGG + chr8.1:15762568-15762587 MS.gene044479:CDS 40.0%
CCGGAGAAGAAAATCAACAA+AGG + chr8.1:15763006-15763025 MS.gene044479:CDS 40.0%
CTGCAGAGTAAAACAAGCAA+CGG + chr8.1:15763372-15763391 MS.gene044479:CDS 40.0%
GAGGACATTTCATGACTTCT+TGG - chr8.1:15762675-15762694 None:intergenic 40.0%
GATTCACTTGAACAAGGAAC+AGG + chr8.1:15763039-15763058 MS.gene044479:CDS 40.0%
GTTACTGGAATCACACTCAA+TGG + chr8.1:15763478-15763497 MS.gene044479:CDS 40.0%
TAAAACAGTGGAATCTGAGG+AGG - chr8.1:15762872-15762891 None:intergenic 40.0%
TAACCATGATCAACGGTGTT+AGG - chr8.1:15763462-15763481 None:intergenic 40.0%
TGGGAGTTAGACTTATTCTC+CGG - chr8.1:15762916-15762935 None:intergenic 40.0%
! AAAACAAGCAACGGTGGATT+TGG + chr8.1:15763381-15763400 MS.gene044479:CDS 40.0%
! TTTGGATCGTTGGATTGGAA+TGG + chr8.1:15763399-15763418 MS.gene044479:CDS 40.0%
!!! TTGCCGTTTGGTTTTGGTAT+CGG + chr8.1:15763126-15763145 MS.gene044479:CDS 40.0%
!!! TTGTTGATTTTCTTCTCCGG+CGG - chr8.1:15763006-15763025 None:intergenic 40.0%
!!! TTTTGGTTTGCTAGAGCGTT+TGG - chr8.1:15762842-15762861 None:intergenic 40.0%
AAACGGCAATGTCTCGTTAG+AGG - chr8.1:15763115-15763134 None:intergenic 45.0%
ACACCGTTGATCATGGTTAC+TGG + chr8.1:15763463-15763482 MS.gene044479:CDS 45.0%
CAAAAGCTGATGAGCGTTAC+CGG + chr8.1:15763219-15763238 MS.gene044479:CDS 45.0%
CAGAGTAAAACAAGCAACGG+TGG + chr8.1:15763375-15763394 MS.gene044479:CDS 45.0%
CGGTAAAACAGTGGAATCTG+AGG - chr8.1:15762875-15762894 None:intergenic 45.0%
CTTCCTAACACCGTTGATCA+TGG + chr8.1:15763456-15763475 MS.gene044479:CDS 45.0%
GAACAAGGAACAGGTGATTG+TGG + chr8.1:15763048-15763067 MS.gene044479:CDS 45.0%
GAGATACAACATTCCATCGG+AGG + chr8.1:15762571-15762590 MS.gene044479:CDS 45.0%
GTGGATTTGGATCGTTGGAT+TGG + chr8.1:15763394-15763413 MS.gene044479:CDS 45.0%
TCACACTCAATGGTCTGATC+AGG + chr8.1:15763488-15763507 MS.gene044479:CDS 45.0%
TCTAACGAGACATTGCCGTT+TGG + chr8.1:15763114-15763133 MS.gene044479:CDS 45.0%
TGGAGTTGTCGGTAAAACAG+TGG - chr8.1:15762884-15762903 None:intergenic 45.0%
TTACCGGAGAATATAGGTGC+TGG + chr8.1:15763279-15763298 MS.gene044479:CDS 45.0%
! CAGTTTTTGCAGAAGTGACG+AGG - chr8.1:15762754-15762773 None:intergenic 45.0%
! TCGTTGGATTGGAATGGTGA+TGG + chr8.1:15763405-15763424 MS.gene044479:CDS 45.0%
! TGCTAGAGCGTTTGGATTTC+CGG - chr8.1:15762834-15762853 None:intergenic 45.0%
! TGTTTTACCGACAACTCCAC+CGG + chr8.1:15762885-15762904 MS.gene044479:CDS 45.0%
!! GAGACATTGCCGTTTGGTTT+TGG + chr8.1:15763120-15763139 MS.gene044479:CDS 45.0%
!! TTGGATTGGAATGGTGATGG+TGG + chr8.1:15763408-15763427 MS.gene044479:CDS 45.0%
ATGATGCGTCGTCGTTTCAG+TGG + chr8.1:15763190-15763209 MS.gene044479:CDS 50.0%
CGACGTTACTGGACTAAAGG+CGG + chr8.1:15762775-15762794 MS.gene044479:CDS 50.0%
CGCCTTTAGTCCAGTAACGT+CGG - chr8.1:15762777-15762796 None:intergenic 50.0%
GCAAAAACTGCCGACGTTAC+TGG + chr8.1:15762764-15762783 MS.gene044479:CDS 50.0%
GCACCAGCACCTATATTCTC+CGG - chr8.1:15763285-15763304 None:intergenic 50.0%
GGAACTCTCACTGCTGGAAT+GGG - chr8.1:15762935-15762954 None:intergenic 50.0%
TGCCGACGTTACTGGACTAA+AGG + chr8.1:15762772-15762791 MS.gene044479:CDS 50.0%
TGGAACTCTCACTGCTGGAA+TGG - chr8.1:15762936-15762955 None:intergenic 50.0%
! ACCGAAGAATCTGGTTCCTC+CGG - chr8.1:15762599-15762618 None:intergenic 50.0%
! CAACGGTGGATTTGGATCGT+TGG + chr8.1:15763389-15763408 MS.gene044479:CDS 50.0%
! CGGTAACGCTCATCAGCTTT+TGG - chr8.1:15763221-15763240 None:intergenic 50.0%
! GATGGTGGTGCAGATCATCA+AGG + chr8.1:15763423-15763442 MS.gene044479:CDS 50.0%
! TTGATTTTCTTCTCCGGCGG+TGG - chr8.1:15763003-15763022 None:intergenic 50.0%
!! GAGAATATAGGTGCTGGTGC+TGG + chr8.1:15763285-15763304 MS.gene044479:CDS 50.0%
AACTGTTTCAGCCACCGCAG+CGG - chr8.1:15762968-15762987 None:intergenic 55.0%
AGAAGTGACGAGGCTGAGAG+AGG - chr8.1:15762744-15762763 None:intergenic 55.0%
GCCGGAGGAACCAGATTCTT+CGG + chr8.1:15762595-15762614 MS.gene044479:CDS 55.0%
GGAACCAGATTCTTCGGTGG+CGG + chr8.1:15762601-15762620 MS.gene044479:CDS 55.0%
GGAGGAACCAGATTCTTCGG+TGG + chr8.1:15762598-15762617 MS.gene044479:CDS 55.0%
TTCAGAACCAACACCACCGC+CGG + chr8.1:15762987-15763006 MS.gene044479:CDS 55.0%
TTCTGGTCCTGGATCGTTGC+TGG + chr8.1:15763326-15763345 MS.gene044479:CDS 55.0%
TTTACCGACAACTCCACCGG+AGG + chr8.1:15762888-15762907 MS.gene044479:CDS 55.0%
! GTGTTGATGGAGTCACAGCG+AGG - chr8.1:15762694-15762713 None:intergenic 55.0%
CCATGGTCCAGCAACGATCC+AGG - chr8.1:15763336-15763355 None:intergenic 60.0%
CCTGGATCGTTGCTGGACCA+TGG + chr8.1:15763333-15763352 MS.gene044479:CDS 60.0%
GACTTATTCTCCGGCGCCTC+CGG - chr8.1:15762907-15762926 None:intergenic 60.0%
GAGGCTGGAACTCTCACTGC+TGG - chr8.1:15762941-15762960 None:intergenic 60.0%
TTCTTCTCCGGCGGTGGTGT+TGG - chr8.1:15762997-15763016 None:intergenic 60.0%
! ACCAGATTCTTCGGTGGCGG+AGG + chr8.1:15762604-15762623 MS.gene044479:CDS 60.0%
! CAACATTCCATCGGAGGCGC+CGG + chr8.1:15762577-15762596 MS.gene044479:CDS 60.0%
!! AGATTCTTCGGTGGCGGAGG+CGG + chr8.1:15762607-15762626 MS.gene044479:CDS 60.0%
!! ATAGGTGCTGGTGCTGGTGC+TGG + chr8.1:15763291-15763310 MS.gene044479:CDS 60.0%
GCCTCCGCCACCGAAGAATC+TGG - chr8.1:15762608-15762627 None:intergenic 65.0%
GCTGGTGGGGGTGGTTCTTC+TGG + chr8.1:15763309-15763328 MS.gene044479:CDS 65.0%
GGGGGTGGTTCTTCTGGTCC+TGG + chr8.1:15763315-15763334 MS.gene044479:CDS 65.0%
GTCCTCCGTAACGTCCCCGT+CGG + chr8.1:15762799-15762818 MS.gene044479:CDS 65.0%
TGTTTCAGCCACCGCAGCGG+CGG - chr8.1:15762965-15762984 None:intergenic 65.0%
TTATTCTCCGGCGCCTCCGG+TGG - chr8.1:15762904-15762923 None:intergenic 65.0%
TTTCCGGCAACCGCCACCGA+CGG - chr8.1:15762818-15762837 None:intergenic 65.0%
!! GTGCTGGTGCTGGTGCTGGT+GGG + chr8.1:15763295-15763314 MS.gene044479:CDS 65.0%
!! TGCTGGTGCTGGTGCTGGTG+GGG + chr8.1:15763296-15763315 MS.gene044479:CDS 65.0%
CACCGACGGGGACGTTACGG+AGG - chr8.1:15762804-15762823 None:intergenic 70.0%
CGCCACCGACGGGGACGTTA+CGG - chr8.1:15762807-15762826 None:intergenic 70.0%
CGTAACGTCCCCGTCGGTGG+CGG + chr8.1:15762805-15762824 MS.gene044479:CDS 70.0%
CTCCGTAACGTCCCCGTCGG+TGG + chr8.1:15762802-15762821 MS.gene044479:CDS 70.0%
GGCGCCTCCGGTGGAGTTGT+CGG - chr8.1:15762895-15762914 None:intergenic 70.0%
TTCCAGCCTCACCGCCGCTG+CGG + chr8.1:15762951-15762970 MS.gene044479:CDS 70.0%
TTCCGGCAACCGCCACCGAC+GGG - chr8.1:15762817-15762836 None:intergenic 70.0%
! GACAACTCCACCGGAGGCGC+CGG + chr8.1:15762894-15762913 MS.gene044479:CDS 70.0%
!! CATTCCATCGGAGGCGCCGG+AGG + chr8.1:15762580-15762599 MS.gene044479:CDS 70.0%
!! GCTGGTGCTGGTGCTGGTGG+GGG + chr8.1:15763297-15763316 MS.gene044479:CDS 70.0%
!! GGTGCTGGTGCTGGTGCTGG+TGG + chr8.1:15763294-15763313 MS.gene044479:CDS 70.0%
!! TCGGTGGCGGAGGCGGTGAT+CGG + chr8.1:15762614-15762633 MS.gene044479:CDS 70.0%
GGTTCCTCCGGCGCCTCCGA+TGG - chr8.1:15762587-15762606 None:intergenic 75.0%
TCCGGCAACCGCCACCGACG+GGG - chr8.1:15762816-15762835 None:intergenic 75.0%
! TCCCCGTCGGTGGCGGTTGC+CGG + chr8.1:15762812-15762831 MS.gene044479:CDS 75.0%
!! GGTGCTGGTGCTGGTGGGGG+TGG + chr8.1:15763300-15763319 MS.gene044479:CDS 75.0%
! CACCGCAGCGGCGGTGAGGC+TGG - chr8.1:15762956-15762975 None:intergenic 80.0%
! CAGCCACCGCAGCGGCGGTG+AGG - chr8.1:15762960-15762979 None:intergenic 80.0%
! CAGCCTCACCGCCGCTGCGG+TGG + chr8.1:15762954-15762973 MS.gene044479:CDS 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 15762565 15763539 15762565 ID=MS.gene044479
chr8.1 mRNA 15762565 15763539 15762565 ID=MS.gene044479.t1;Parent=MS.gene044479
chr8.1 exon 15762565 15763539 15762565 ID=MS.gene044479.t1.exon1;Parent=MS.gene044479.t1
chr8.1 CDS 15762565 15763539 15762565 ID=cds.MS.gene044479.t1;Parent=MS.gene044479.t1
Gene Sequence

>MS.gene044479

ATGCAGGAGATACAACATTCCATCGGAGGCGCCGGAGGAACCAGATTCTTCGGTGGCGGAGGCGGTGATCGGCGTCTCAGACCCAACCAAAACAACAATAACCTGAACCAAGAAGTCATGAAATGTCCTCGCTGTGACTCCATCAACACCAAATTCTGTTACTACAATAACTACAACCTCTCTCAGCCTCGTCACTTCTGCAAAAACTGCCGACGTTACTGGACTAAAGGCGGTGTCCTCCGTAACGTCCCCGTCGGTGGCGGTTGCCGGAAATCCAAACGCTCTAGCAAACCAAAAAAATCTTCCTCCTCAGATTCCACTGTTTTACCGACAACTCCACCGGAGGCGCCGGAGAATAAGTCTAACTCCCATTCCAGCAGTGAGAGTTCCAGCCTCACCGCCGCTGCGGTGGCTGAAACAGTTTCAGAACCAACACCACCGCCGGAGAAGAAAATCAACAAAGGTTTTGAGAATGATTCACTTGAACAAGGAACAGGTGATTGTGGTATATTCTCAGAGATCGCAACTTTCACAAGCTTGATCACTTCCTCTAACGAGACATTGCCGTTTGGTTTTGGTATCGGTAACGATAACCGTAACGGTAATGTTAACGTTAACGGGTTTAATGATGCGTCGTCGTTTCAGTGGCAAAACCAAAAGCTGATGAGCGTTACCGGCGATCAAAAACATCATGAAGAAGACGCATTGAAGTTGTTACCGGAGAATATAGGTGCTGGTGCTGGTGCTGGTGGGGGTGGTTCTTCTGGTCCTGGATCGTTGCTGGACCATGGTATTGATTTCTCTTTGCTGCAGAGTAAAACAAGCAACGGTGGATTTGGATCGTTGGATTGGAATGGTGATGGTGGTGCAGATCATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCATGGTTACTGGAATCACACTCAATGGTCTGATCAGGATCATTCTTCTCTCTTTCATCTTCCATGA
Protein sequence

>MS.gene044479.t1

MQEIQHSIGGAGGTRFFGGGGGDRRLRPNQNNNNLNQEVMKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKKSSSSDSTVLPTTPPEAPENKSNSHSSSESSSLTAAAVAETVSEPTPPPEKKINKGFENDSLEQGTGDCGIFSEIATFTSLITSSNETLPFGFGIGNDNRNGNVNVNGFNDASSFQWQNQKLMSVTGDQKHHEEDALKLLPENIGAGAGAGGGGSSGPGSLLDHGIDFSLLQSKTSNGGFGSLDWNGDGGADHQGLFDLPNTVDHGYWNHTQWSDQDHSSLFHLP