AlfalfaGEDB | MS.gene044486

M. sativa cultivar XinJiangDaYe / MS.gene044486

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07716.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044486.t1	XP_027192752.1	80.9	183	34	1	4	185	4	186	2.00E-44	189.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044486.t1	A0A3Q7YDZ6	80.9	183	34	1	4	185	4	186	1.5e-44	189.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene044486.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044486.t1	MTR_7g029400	37.383	107	63	1	79	181	55	161	2.85e-16	73.9
MS.gene044486.t1	MTR_8g015250	38.235	102	59	1	84	181	50	151	4.96e-16	73.2
MS.gene044486.t1	MTR_7g017880	42.342	111	60	1	73	179	52	162	7.89e-16	72.8
MS.gene044486.t1	MTR_6g016375	41.441	111	60	1	76	181	57	167	9.03e-16	72.8
MS.gene044486.t1	MTR_4g070860	37.143	105	56	2	93	187	16	120	2.58e-12	62.8
MS.gene044486.t1	MTR_5g015090	38.261	115	58	4	73	179	27	136	3.04e-12	62.4
MS.gene044486.t1	MTR_3g117120	36.275	102	55	2	93	184	16	117	1.20e-11	60.8
MS.gene044486.t1	MTR_1g087040	33.028	109	66	1	84	185	7	115	1.31e-11	60.5
MS.gene044486.t1	MTR_4g097440	29.870	154	86	5	25	172	6	143	1.68e-11	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044486.t1	AT5G60830	54.118	85	39	0	102	186	69	153	8.34e-22	89.0
MS.gene044486.t1	AT5G38800	41.667	96	54	1	86	179	52	147	6.46e-18	77.8
MS.gene044486.t1	AT3G30530	43.000	100	57	0	82	181	59	158	7.32e-18	77.8
MS.gene044486.t1	AT1G13600	42.105	95	50	1	90	179	67	161	3.15e-16	73.9
MS.gene044486.t1	AT5G15830	38.614	101	56	1	92	186	56	156	6.95e-14	67.4
MS.gene044486.t1	AT2G04038	40.426	94	50	1	92	179	56	149	2.01e-13	65.9
MS.gene044486.t1	AT1G75390	40.566	106	55	2	82	179	11	116	1.70e-11	60.8
MS.gene044486.t1	AT2G18160	35.577	104	62	1	90	188	17	120	5.19e-11	59.3
MS.gene044486.t1	AT1G75390	41.237	97	49	2	82	170	11	107	9.88e-11	57.8

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Find 58 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTGAGATGGATACAGA+TGG	0.576394	8.1:+15652298	None:intergenic
AACTAGACGAGTTGAAAGGT+TGG	0.615858	8.1:+15651832	None:intergenic
AAGCCACTAGGGATGTGGTG+AGG	0.721984	8.1:+15651860	None:intergenic
ACCCATCTGTATCCATCTCA+AGG	0.506932	8.1:-15652300	MS.gene044486:CDS
ACCTTGAGATGGATACAGAT+GGG	0.616103	8.1:+15652299	None:intergenic
AGACATGGTACGCAATGACG+AGG	0.666727	8.1:-15652442	None:intergenic
AGACGAGTTGAAAGGTTGGC+TGG	0.483172	8.1:+15651836	None:intergenic
AGATAGTACCGCTTGAAGAG+AGG	0.597446	8.1:+15651930	None:intergenic
AGCAGCGAATTGAAGTCCTG+TGG	0.703639	8.1:-15652068	MS.gene044486:CDS
AGCCTGCAAAACCTGGAAAA+TGG	0.302202	8.1:-15652339	MS.gene044486:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCATGTAAACCTTGAGA+TGG	+	chr8.1:15651987-15652006	None:intergenic	30.0%
CAACAAAATGCTCAACTTAA+AGG	-	chr8.1:15652311-15652330	MS.gene044486:CDS	30.0%
CCAAAAGATCATTTACTTGT+TGG	-	chr8.1:15652268-15652287	MS.gene044486:CDS	30.0%
AACCTTGAGATGGATACAGA+TGG	+	chr8.1:15651977-15651996	None:intergenic	40.0%
ACCTTGAGATGGATACAGAT+GGG	+	chr8.1:15651976-15651995	None:intergenic	40.0%
AGCGGTACTATCTACTTTGT+TGG	-	chr8.1:15652352-15652371	MS.gene044486:CDS	40.0%
CAAAACCTGGAAAATGGAGA+AGG	-	chr8.1:15651939-15651958	MS.gene044486:CDS	40.0%
CAAAGTTTCCTCTCTTCAAG+CGG	-	chr8.1:15652334-15652353	MS.gene044486:CDS	40.0%
CAACAACTCTGGTAAAGCAA+AGG	-	chr8.1:15652106-15652125	MS.gene044486:CDS	40.0%
GATACAGATGGGTCAAAGAA+TGG	+	chr8.1:15651965-15651984	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	15651834	15652460	15651834	ID=MS.gene044486
chr8.1	mRNA	15651834	15652460	15651834	ID=MS.gene044486.t1;Parent=MS.gene044486
chr8.1	exon	15651834	15652460	15651834	ID=MS.gene044486.t1.exon1;Parent=MS.gene044486.t1
chr8.1	CDS	15651834	15652460	15651834	ID=cds.MS.gene044486.t1;Parent=MS.gene044486.t1

Gene Sequence

>MS.gene044486

ATGGTACGCAATGACGAGGAACTCCATGAAGTACCCTATGCTTCCGTGATACAGTACCTTTCCTATCCTTCTCCAACCCAGAAACCCATCATGAACTCAAGCCTGCAAAACCTGGAAAATGGAGAAGGCCATTCTTTGACCCATCTGTATCCATCTCAAGGTTTACATGATATTCCATTTCACTACTCCCAGCTTCACCTCTCTAACGACAGCGACAGTCCCATTCAAATTCCAGACCATAAATCTTCTCCCAACTCATCATCAAACAGCAACAACAACTCTGGTAAAGCAAAGGATCTCCTTGATGATCGAAAGAAGAAAAGGATGTTCTCTAACAGAGAATCTGCTCGTCGGTCGCGAATGAGAAAGAAGCAGCGAATTGAAGTCCTGTGGTATCAAGTGAATCACCTGCAGGCGCTGAACCATCAATTGTCCCAAAAGATCATTTACTTGTTGGAATGTAACCAACTAATCAACCAACAAAATGCTCAACTTAAAGGCAAAGTTTCCTCTCTTCAAGCGGTACTATCTACTTTGTTGGTTACGACCGGAAATGTTGGTTACGACCGGAAAAGTTACCTCACCACATCCCTAGTGGCTTCCCAGCCAACCTTTCAACTCGTCTAG

Protein sequence

>MS.gene044486.t1

MVRNDEELHEVPYASVIQYLSYPSPTQKPIMNSSLQNLENGEGHSLTHLYPSQGLHDIPFHYSQLHLSNDSDSPIQIPDHKSSPNSSSNSNNNSGKAKDLLDDRKKKRMFSNRESARRSRMRKKQRIEVLWYQVNHLQALNHQLSQKIIYLLECNQLINQQNAQLKGKVSSLQAVLSTLLVTTGNVGYDRKSYLTTSLVASQPTFQLV