Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044747.t1 | KEH16761.1 | 54.9 | 233 | 84 | 4 | 86 | 313 | 220 | 436 | 1.10E-49 | 207.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044747.t1 | Q08562 | 42.9 | 77 | 42 | 1 | 16 | 92 | 920 | 994 | 6.5e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044747.t1 | A0A072THQ1 | 54.9 | 233 | 84 | 4 | 86 | 313 | 220 | 436 | 8.1e-50 | 207.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene044747.t1 | TR | SNF2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044747.t1 | MTR_0098s0100 | 57.872 | 235 | 74 | 5 | 86 | 313 | 220 | 436 | 2.69e-75 | 240 |
| MS.gene044747.t1 | MTR_4g049500 | 56.757 | 74 | 31 | 1 | 29 | 102 | 227 | 299 | 4.40e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044747.t1 | AT1G05120 | 59.649 | 57 | 22 | 1 | 29 | 85 | 170 | 225 | 3.30e-12 | 67.8 |
| MS.gene044747.t1 | AT1G05120 | 59.649 | 57 | 22 | 1 | 29 | 85 | 127 | 182 | 3.36e-12 | 67.8 |
| MS.gene044747.t1 | AT1G02670 | 43.011 | 93 | 48 | 2 | 7 | 99 | 64 | 151 | 1.53e-11 | 65.5 |
| MS.gene044747.t1 | AT1G02670 | 43.011 | 93 | 48 | 2 | 7 | 99 | 102 | 189 | 1.61e-11 | 65.5 |
| MS.gene044747.t1 | AT1G02670 | 43.011 | 93 | 48 | 2 | 7 | 99 | 64 | 151 | 1.74e-11 | 65.5 |
| MS.gene044747.t1 | AT1G02670 | 43.011 | 93 | 48 | 2 | 7 | 99 | 91 | 178 | 1.77e-11 | 65.5 |
| MS.gene044747.t1 | AT1G02670 | 43.011 | 93 | 48 | 2 | 7 | 99 | 91 | 178 | 1.85e-11 | 65.1 |
| MS.gene044747.t1 | AT1G02670 | 43.011 | 93 | 48 | 2 | 7 | 99 | 91 | 178 | 1.96e-11 | 65.5 |
| MS.gene044747.t1 | AT1G02670 | 43.011 | 93 | 48 | 2 | 7 | 99 | 91 | 178 | 2.01e-11 | 65.1 |
Find 59 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGATCTTGTGATATA+AGG | 0.200885 | 4.4:+50957109 | None:intergenic |
| TCTGGACCTTGGTTCTTCTT+AGG | 0.203879 | 4.4:+50957676 | None:intergenic |
| GTGATATAAGGCTTGTTCTT+TGG | 0.264173 | 4.4:+50957121 | None:intergenic |
| GCTTCTAGATTCACAACTTC+TGG | 0.295961 | 4.4:+50957658 | None:intergenic |
| ATCTGATTATTCATTTATTT+AGG | 0.307151 | 4.4:-50959119 | MS.gene044747:CDS |
| ATGGGCAAATCTTGCAGATA+TGG | 0.331488 | 4.4:-50957356 | MS.gene044747:CDS |
| CTGGACCTTGGTTCTTCTTA+GGG | 0.344666 | 4.4:+50957677 | None:intergenic |
| CCTTGCCGATGGAATGGGTT+TGG | 0.351689 | 4.4:-50959034 | MS.gene044747:CDS |
| AATTCCTGAAGCGGATGATC+AGG | 0.355706 | 4.4:-50957209 | MS.gene044747:CDS |
| GCACTTCATCTGAAAGGCTT+GGG | 0.373994 | 4.4:+50957079 | None:intergenic |
| ACATTCAGTAAATCGTCATT+TGG | 0.387485 | 4.4:+50957331 | None:intergenic |
| GGGACATAAACAGGAGCAAC+AGG | 0.388238 | 4.4:+50957697 | None:intergenic |
| AAGCCCTGATCATCCGCTTC+AGG | 0.388523 | 4.4:+50957205 | None:intergenic |
| CTTGCCGATGGAATGGGTTT+GGG | 0.394147 | 4.4:-50959033 | MS.gene044747:CDS |
| CAATCTCTATATTGTGTTGT+TGG | 0.397071 | 4.4:+50957302 | None:intergenic |
| CCAATGATAACCATTTCATT+TGG | 0.397821 | 4.4:+50959094 | None:intergenic |
| TTCTTCTTAGGGACATAAAC+AGG | 0.398874 | 4.4:+50957688 | None:intergenic |
| TACAAGGGCAGTTGCTTGAA+TGG | 0.401870 | 4.4:+50959005 | None:intergenic |
| CCAAATGAAATGGTTATCAT+TGG | 0.403919 | 4.4:-50959094 | MS.gene044747:CDS |
| TATTTAGGTACCAAATGAAA+TGG | 0.419513 | 4.4:-50959104 | MS.gene044747:CDS |
| GAATATAGAGGATTTGAATC+TGG | 0.429232 | 4.4:-50957617 | MS.gene044747:CDS |
| TTAGACATTGCTTGATGCAC+TGG | 0.433345 | 4.4:+50957247 | None:intergenic |
| GAATGCTAGCAGCTCAGAAA+AGG | 0.442649 | 4.4:-50957431 | MS.gene044747:CDS |
| AATTCTGATTATGATTATGA+AGG | 0.459082 | 4.4:-50959916 | MS.gene044747:intron |
| AGCACTTCATCTGAAAGGCT+TGG | 0.465383 | 4.4:+50957078 | None:intergenic |
| TTTCCATCAGTGTCATCCAT+TGG | 0.465390 | 4.4:+50959982 | None:intergenic |
| GGAATCCTTGCCGATGGAAT+GGG | 0.471414 | 4.4:-50959039 | MS.gene044747:CDS |
| CAACAACACAATATAGAGAT+TGG | 0.471857 | 4.4:-50957301 | MS.gene044747:CDS |
| AGGAAGTTCAAATGAGTTTG+TGG | 0.484878 | 4.4:-50957494 | MS.gene044747:CDS |
| GTTTGTGGATGCAAATCAAA+TGG | 0.486926 | 4.4:-50957479 | MS.gene044747:CDS |
| CAAGAAAGATCTGTAAGTAA+TGG | 0.498410 | 4.4:-50959063 | MS.gene044747:CDS |
| AAGCCTCATCTTCAAAAGAA+AGG | 0.500610 | 4.4:-50957639 | MS.gene044747:CDS |
| TTCAAAAGAAAGGAATATAG+AGG | 0.502594 | 4.4:-50957629 | MS.gene044747:CDS |
| AGGAATCCTTGCCGATGGAA+TGG | 0.503624 | 4.4:-50959040 | MS.gene044747:CDS |
| GATTCACAACTTCTGGACCT+TGG | 0.509881 | 4.4:+50957665 | None:intergenic |
| TTTGTGGATGCAAATCAAAT+GGG | 0.530804 | 4.4:-50957478 | MS.gene044747:CDS |
| CAACCAATGGATGACACTGA+TGG | 0.532184 | 4.4:-50959985 | None:intergenic |
| TTCTCCCAAACCCATTCCAT+CGG | 0.539660 | 4.4:+50959029 | None:intergenic |
| CACTTCATCTGAAAGGCTTG+GGG | 0.542905 | 4.4:+50957080 | None:intergenic |
| ATTCCTGAAGCGGATGATCA+GGG | 0.550964 | 4.4:-50957208 | MS.gene044747:CDS |
| ATTCACGTTTAGCAAGTACA+AGG | 0.552008 | 4.4:+50958989 | None:intergenic |
| AATCAGATCTGACGATTCAT+CGG | 0.561517 | 4.4:+50959134 | None:intergenic |
| GTAAAAGCACTTCATCTGAA+AGG | 0.567170 | 4.4:+50957073 | None:intergenic |
| AGAAAAGGAAGATGACATGC+AGG | 0.574530 | 4.4:-50957416 | MS.gene044747:CDS |
| AGATGACTCAATTCCTGAAG+CGG | 0.579363 | 4.4:-50957218 | MS.gene044747:CDS |
| GAAAGATCTGTAAGTAATGG+AGG | 0.580781 | 4.4:-50959060 | MS.gene044747:CDS |
| TACCTTACCAGAAAAGACTC+TGG | 0.586626 | 4.4:+50957270 | None:intergenic |
| GAAGCAGATATTGAAGACTC+AGG | 0.590286 | 4.4:-50957514 | MS.gene044747:CDS |
| GCCTTATATCACAAGATCAA+AGG | 0.600658 | 4.4:-50957110 | MS.gene044747:CDS |
| TTACCAGAAAAGACTCTGGA+GGG | 0.603002 | 4.4:+50957274 | None:intergenic |
| TATATCACAAGATCAAAGGT+TGG | 0.609983 | 4.4:-50957106 | MS.gene044747:CDS |
| AATGGAGGAATCCTTGCCGA+TGG | 0.617671 | 4.4:-50959045 | MS.gene044747:CDS |
| CCAAACCCATTCCATCGGCA+AGG | 0.627355 | 4.4:+50959034 | None:intergenic |
| ACTTCATCTGAAAGGCTTGG+GGG | 0.649914 | 4.4:+50957081 | None:intergenic |
| CTTACCAGAAAAGACTCTGG+AGG | 0.672005 | 4.4:+50957273 | None:intergenic |
| TTGTGGATGCAAATCAAATG+GGG | 0.673990 | 4.4:-50957477 | MS.gene044747:CDS |
| TATGTCCCTAAGAAGAACCA+AGG | 0.675021 | 4.4:-50957682 | MS.gene044747:CDS |
| TTCACGTTTAGCAAGTACAA+GGG | 0.684937 | 4.4:+50958990 | None:intergenic |
| GGACATAAACAGGAGCAACA+GGG | 0.701922 | 4.4:+50957698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTAAAGAAAACAAAAA+AGG | - | chr4.4:50957789-50957808 | MS.gene044747:intron | 15.0% |
| !! | AATTATTTATCTTATCATTG+TGG | - | chr4.4:50957340-50957359 | MS.gene044747:CDS | 15.0% |
| !! | ATCTGATTATTCATTTATTT+AGG | - | chr4.4:50957944-50957963 | MS.gene044747:intron | 15.0% |
| !! | TAGTGATAAATTTGATTAAA+GGG | - | chr4.4:50957440-50957459 | MS.gene044747:CDS | 15.0% |
| !! | TTAGTGATAAATTTGATTAA+AGG | - | chr4.4:50957439-50957458 | MS.gene044747:CDS | 15.0% |
| !! | AAACACTAATGGTTAAAAAT+GGG | + | chr4.4:50957546-50957565 | None:intergenic | 20.0% |
| !! | AATTCTGATTATGATTATGA+AGG | - | chr4.4:50957147-50957166 | MS.gene044747:CDS | 20.0% |
| !! | CAAATAATTTAAGAAAACCA+GGG | + | chr4.4:50958942-50958961 | None:intergenic | 20.0% |
| !! | GAATTTCCTAAAAAATTCAT+GGG | - | chr4.4:50959689-50959708 | MS.gene044747:intron | 20.0% |
| !! | TGAATTTCCTAAAAAATTCA+TGG | - | chr4.4:50959688-50959707 | MS.gene044747:intron | 20.0% |
| !!! | AACATGTTGCTTAAAAATTA+AGG | + | chr4.4:50958361-50958380 | None:intergenic | 20.0% |
| !!! | ACTAAGTTTTCAATATCAAA+GGG | + | chr4.4:50957424-50957443 | None:intergenic | 20.0% |
| !!! | CAAATTAATCATTTGGTTTT+TGG | - | chr4.4:50958146-50958165 | MS.gene044747:intron | 20.0% |
| !!! | GTTTCAAATTTTATCTTAAC+TGG | + | chr4.4:50957402-50957421 | None:intergenic | 20.0% |
| ! | AACTTAACAAAGGAAAATTC+AGG | - | chr4.4:50958327-50958346 | MS.gene044747:intron | 25.0% |
| ! | AAGGTCTTCAATATTTATCT+TGG | + | chr4.4:50957668-50957687 | None:intergenic | 25.0% |
| ! | AATATCACAAACATTGCTAA+CGG | + | chr4.4:50958623-50958642 | None:intergenic | 25.0% |
| ! | ACAGAAAAATCAAACAAAGA+AGG | - | chr4.4:50959341-50959360 | MS.gene044747:intron | 25.0% |
| ! | ATAAATATTGAAGACCTTAG+TGG | - | chr4.4:50957670-50957689 | MS.gene044747:CDS | 25.0% |
| ! | ATATGCACAGATAATATTAC+TGG | - | chr4.4:50959096-50959115 | MS.gene044747:CDS | 25.0% |
| ! | ATATTCCACATCTACAAAAA+AGG | + | chr4.4:50959229-50959248 | None:intergenic | 25.0% |
| ! | ATCACAAAGTTTCAAATAGA+GGG | + | chr4.4:50957192-50957211 | None:intergenic | 25.0% |
| ! | CAGAAAAATCAAACAAAGAA+GGG | - | chr4.4:50959342-50959361 | MS.gene044747:intron | 25.0% |
| ! | CTACAGTCAAATTAATCATT+TGG | - | chr4.4:50958139-50958158 | MS.gene044747:intron | 25.0% |
| ! | GAAACACTAATGGTTAAAAA+TGG | + | chr4.4:50957547-50957566 | None:intergenic | 25.0% |
| ! | GCAAATAATTTAAGAAAACC+AGG | + | chr4.4:50958943-50958962 | None:intergenic | 25.0% |
| ! | GCTATGTTGAAAATTATTCA+AGG | + | chr4.4:50958231-50958250 | None:intergenic | 25.0% |
| ! | GTAATATTATCTGTGCATAT+TGG | + | chr4.4:50959096-50959115 | None:intergenic | 25.0% |
| ! | GTTGCTTAAAAATTAAGGTA+TGG | + | chr4.4:50958356-50958375 | None:intergenic | 25.0% |
| ! | TATTTAGGTACCAAATGAAA+TGG | - | chr4.4:50957959-50957978 | MS.gene044747:intron | 25.0% |
| ! | TGAATTACAACAAATGTGAT+GGG | - | chr4.4:50958092-50958111 | MS.gene044747:intron | 25.0% |
| ! | TGTAAAATAAGGTTGCTTAA+AGG | + | chr4.4:50958442-50958461 | None:intergenic | 25.0% |
| ! | TTCAAAAGAAAGGAATATAG+AGG | - | chr4.4:50959434-50959453 | MS.gene044747:intron | 25.0% |
| !! | ATTGTAATTCATGTTTTGCA+AGG | - | chr4.4:50958193-50958212 | MS.gene044747:intron | 25.0% |
| !! | CACTAAGTTTTCAATATCAA+AGG | + | chr4.4:50957425-50957444 | None:intergenic | 25.0% |
| !! | GTTTTCTTAAATTATTTGCC+TGG | - | chr4.4:50958944-50958963 | MS.gene044747:intron | 25.0% |
| !! | TAGTTATATCCAATGGTTTT+AGG | - | chr4.4:50957721-50957740 | MS.gene044747:CDS | 25.0% |
| !! | TTTAAGACCAAAAGAAATTC+AGG | + | chr4.4:50957280-50957299 | None:intergenic | 25.0% |
| !! | TTTCTTTTTCTTTTCACCTT+AGG | + | chr4.4:50957769-50957788 | None:intergenic | 25.0% |
| !!! | AACATGTTCTCTGAAATATT+AGG | - | chr4.4:50958373-50958392 | MS.gene044747:intron | 25.0% |
| !!! | ATGCATTTACTTTTCAAAGA+GGG | + | chr4.4:50957480-50957499 | None:intergenic | 25.0% |
| !!! | CAATTGCAAAGAGTATTTTA+GGG | + | chr4.4:50959056-50959075 | None:intergenic | 25.0% |
| !!! | TTCTTTGTTTGATTTTTCTG+TGG | + | chr4.4:50959342-50959361 | None:intergenic | 25.0% |
| AATAAGGTTGCTTAAAGGAA+AGG | + | chr4.4:50958437-50958456 | None:intergenic | 30.0% | |
| ACATTCAGTAAATCGTCATT+TGG | + | chr4.4:50959735-50959754 | None:intergenic | 30.0% | |
| ACCAAAAGATCTTTCTAACA+TGG | + | chr4.4:50959127-50959146 | None:intergenic | 30.0% | |
| ACCTTTGATCTTGTGATATA+AGG | + | chr4.4:50959957-50959976 | None:intergenic | 30.0% | |
| AGGATTCTTGTTGAAAGAAA+AGG | - | chr4.4:50959198-50959217 | MS.gene044747:intron | 30.0% | |
| ATCCTAAGCCAACATTATTA+TGG | - | chr4.4:50957815-50957834 | MS.gene044747:intron | 30.0% | |
| ATGCATCTAAAGACTTTGTT+AGG | - | chr4.4:50957494-50957513 | MS.gene044747:CDS | 30.0% | |
| CAACAACACAATATAGAGAT+TGG | - | chr4.4:50959762-50959781 | MS.gene044747:intron | 30.0% | |
| CAAGAAAGATCTGTAAGTAA+TGG | - | chr4.4:50958000-50958019 | MS.gene044747:intron | 30.0% | |
| CAATCTCTATATTGTGTTGT+TGG | + | chr4.4:50959764-50959783 | None:intergenic | 30.0% | |
| CATCACAAAGTTTCAAATAG+AGG | + | chr4.4:50957193-50957212 | None:intergenic | 30.0% | |
| CCAAATGAAATGGTTATCAT+TGG | - | chr4.4:50957969-50957988 | MS.gene044747:intron | 30.0% | |
| CCAATGATAACCATTTCATT+TGG | + | chr4.4:50957972-50957991 | None:intergenic | 30.0% | |
| GAATATAGAGGATTTGAATC+TGG | - | chr4.4:50959446-50959465 | MS.gene044747:intron | 30.0% | |
| GAGATTGATCGATCAAAATT+TGG | - | chr4.4:50957861-50957880 | MS.gene044747:intron | 30.0% | |
| GTGAATTACAACAAATGTGA+TGG | - | chr4.4:50958091-50958110 | MS.gene044747:intron | 30.0% | |
| TAAAATACGAATCCATACCT+GGG | + | chr4.4:50959010-50959029 | None:intergenic | 30.0% | |
| TAAATTATTTGCCTGGTCAA+AGG | - | chr4.4:50958951-50958970 | MS.gene044747:intron | 30.0% | |
| TAAGCATGCCATAATAATGT+TGG | + | chr4.4:50957826-50957845 | None:intergenic | 30.0% | |
| TATATCACAAGATCAAAGGT+TGG | - | chr4.4:50959957-50959976 | MS.gene044747:CDS | 30.0% | |
| TCCTTTGTTAAGTTACCAAA+GGG | + | chr4.4:50958321-50958340 | None:intergenic | 30.0% | |
| TTATCATTGTGGTTTGAATG+AGG | - | chr4.4:50957351-50957370 | MS.gene044747:CDS | 30.0% | |
| TTCACCTTAGGTAAATCAAA+TGG | + | chr4.4:50957757-50957776 | None:intergenic | 30.0% | |
| TTCCTTTGTTAAGTTACCAA+AGG | + | chr4.4:50958322-50958341 | None:intergenic | 30.0% | |
| TTCTTTCAACAAGAATCCTA+TGG | + | chr4.4:50959197-50959216 | None:intergenic | 30.0% | |
| TTGCAATAGCTACAAAAATC+TGG | + | chr4.4:50959261-50959280 | None:intergenic | 30.0% | |
| TTTGTGGATGCAAATCAAAT+GGG | - | chr4.4:50959585-50959604 | MS.gene044747:intron | 30.0% | |
| ! | ATAGGTTTAGAAGGTGTATA+AGG | + | chr4.4:50958562-50958581 | None:intergenic | 30.0% |
| ! | ATCTCCATTTGATTTACCTA+AGG | - | chr4.4:50957750-50957769 | MS.gene044747:CDS | 30.0% |
| ! | ATCTTTTGGTCATTATGCTA+GGG | - | chr4.4:50959137-50959156 | MS.gene044747:CDS | 30.0% |
| ! | CAGTAAATTTTTGTAACCAG+TGG | + | chr4.4:50958276-50958295 | None:intergenic | 30.0% |
| ! | CGATGATTAGTTATATCCAA+TGG | - | chr4.4:50957714-50957733 | MS.gene044747:CDS | 30.0% |
| ! | GATTTTTCACCTAAAACCAT+TGG | + | chr4.4:50957733-50957752 | None:intergenic | 30.0% |
| ! | TAAATTTTTGTAACCAGTGG+AGG | + | chr4.4:50958273-50958292 | None:intergenic | 30.0% |
| ! | TCACATTCCTGAATTTCTTT+TGG | - | chr4.4:50957270-50957289 | MS.gene044747:CDS | 30.0% |
| ! | TCCATGTTAGAAAGATCTTT+TGG | - | chr4.4:50959123-50959142 | MS.gene044747:CDS | 30.0% |
| ! | TTAACCATTAGTGTTTCTGA+TGG | - | chr4.4:50957550-50957569 | MS.gene044747:CDS | 30.0% |
| ! | TTTCAACATAGCTGTTTCAT+TGG | - | chr4.4:50958239-50958258 | MS.gene044747:intron | 30.0% |
| !! | ATTCCTTTCTTTTGAAGATG+AGG | + | chr4.4:50959430-50959449 | None:intergenic | 30.0% |
| !! | GATGCATTTACTTTTCAAAG+AGG | + | chr4.4:50957481-50957500 | None:intergenic | 30.0% |
| !! | TGCATTTACTTTTCAAAGAG+GGG | + | chr4.4:50957479-50957498 | None:intergenic | 30.0% |
| !! | TTGCTTGTTGTTGAATACTA+GGG | + | chr4.4:50958984-50959003 | None:intergenic | 30.0% |
| !!! | ACGTTTTTTGTTGCTTGTTT+TGG | + | chr4.4:50958591-50958610 | None:intergenic | 30.0% |
| !!! | CGTTTTTTGTTGCTTGTTTT+GGG | + | chr4.4:50958590-50958609 | None:intergenic | 30.0% |
| !!! | GATTTGCCCATGAATTTTTT+AGG | + | chr4.4:50959698-50959717 | None:intergenic | 30.0% |
| !!! | GCAATTGCAAAGAGTATTTT+AGG | + | chr4.4:50959057-50959076 | None:intergenic | 30.0% |
| !!! | GGCACTATTTTGAAATTTGT+AGG | - | chr4.4:50959289-50959308 | MS.gene044747:intron | 30.0% |
| !!! | GTTTTTTGTTGCTTGTTTTG+GGG | + | chr4.4:50958589-50958608 | None:intergenic | 30.0% |
| !!! | TCGTATTTTAGGTTTATCTC+AGG | - | chr4.4:50959020-50959039 | MS.gene044747:CDS | 30.0% |
| !!! | TTATGCCTTTTTTGTAGATG+TGG | - | chr4.4:50959221-50959240 | MS.gene044747:intron | 30.0% |
| !!! | TTTTTTGTTGCTTGTTTTGG+GGG | + | chr4.4:50958588-50958607 | None:intergenic | 30.0% |
| AAGCCTCATCTTCAAAAGAA+AGG | - | chr4.4:50959424-50959443 | MS.gene044747:intron | 35.0% | |
| AATCAGATCTGACGATTCAT+CGG | + | chr4.4:50957932-50957951 | None:intergenic | 35.0% | |
| AATGCACAATCTAGAAAGAG+AGG | - | chr4.4:50957634-50957653 | MS.gene044747:CDS | 35.0% | |
| AGGAAGTTCAAATGAGTTTG+TGG | - | chr4.4:50959569-50959588 | MS.gene044747:intron | 35.0% | |
| ATACTCTTTGCAATTGCTAG+TGG | - | chr4.4:50959060-50959079 | MS.gene044747:CDS | 35.0% | |
| ATGAGAAGGGTTAGATCTAT+AGG | - | chr4.4:50958901-50958920 | MS.gene044747:intron | 35.0% | |
| ATGCTTAGAGAGATGAACAT+GGG | - | chr4.4:50957839-50957858 | MS.gene044747:intron | 35.0% | |
| ATTCACGTTTAGCAAGTACA+AGG | + | chr4.4:50958077-50958096 | None:intergenic | 35.0% | |
| CTAAAATACGAATCCATACC+TGG | + | chr4.4:50959011-50959030 | None:intergenic | 35.0% | |
| GAAAGATCTGTAAGTAATGG+AGG | - | chr4.4:50958003-50958022 | MS.gene044747:intron | 35.0% | |
| GCCTTATATCACAAGATCAA+AGG | - | chr4.4:50959953-50959972 | MS.gene044747:CDS | 35.0% | |
| GGAGTAACATCTATTGGAAA+AGG | - | chr4.4:50958844-50958863 | MS.gene044747:intron | 35.0% | |
| GTGGAAAGATATTGGTAGAT+GGG | - | chr4.4:50958822-50958841 | MS.gene044747:intron | 35.0% | |
| GTTTGTGGATGCAAATCAAA+TGG | - | chr4.4:50959584-50959603 | MS.gene044747:intron | 35.0% | |
| TCTGTGATGTGGAAAGATAT+TGG | - | chr4.4:50958814-50958833 | MS.gene044747:intron | 35.0% | |
| TGGAAAGATATTGGTAGATG+GGG | - | chr4.4:50958823-50958842 | MS.gene044747:intron | 35.0% | |
| TGTGGAAAGATATTGGTAGA+TGG | - | chr4.4:50958821-50958840 | MS.gene044747:intron | 35.0% | |
| TGTTAAGTTACCAAAGGGAA+TGG | + | chr4.4:50958316-50958335 | None:intergenic | 35.0% | |
| TTCACGTTTAGCAAGTACAA+GGG | + | chr4.4:50958076-50958095 | None:intergenic | 35.0% | |
| TTCTCCATCAGAAACACTAA+TGG | + | chr4.4:50957557-50957576 | None:intergenic | 35.0% | |
| TTCTGTTGAAGACATGAGAA+GGG | - | chr4.4:50958888-50958907 | MS.gene044747:intron | 35.0% | |
| TTCTTCTTAGGGACATAAAC+AGG | + | chr4.4:50959378-50959397 | None:intergenic | 35.0% | |
| TTGTGGATGCAAATCAAATG+GGG | - | chr4.4:50959586-50959605 | MS.gene044747:intron | 35.0% | |
| ! | ATTCATGTTTTGCAAGGACA+AGG | - | chr4.4:50958199-50958218 | MS.gene044747:intron | 35.0% |
| ! | CAGGTATGGATTCGTATTTT+AGG | - | chr4.4:50959009-50959028 | MS.gene044747:CDS | 35.0% |
| ! | GATCTTTTGGTCATTATGCT+AGG | - | chr4.4:50959136-50959155 | MS.gene044747:CDS | 35.0% |
| ! | GGCACTTCTATATTTTCAGT+AGG | + | chr4.4:50959321-50959340 | None:intergenic | 35.0% |
| ! | GTGATATAAGGCTTGTTCTT+TGG | + | chr4.4:50959945-50959964 | None:intergenic | 35.0% |
| ! | TAGGTTTATCTCAGGAGTAT+TGG | - | chr4.4:50959028-50959047 | MS.gene044747:CDS | 35.0% |
| ! | TCCCTTTGGTAACTTAACAA+AGG | - | chr4.4:50958317-50958336 | MS.gene044747:intron | 35.0% |
| ! | TGATGAATATGATGCTGCTT+TGG | - | chr4.4:50958705-50958724 | MS.gene044747:intron | 35.0% |
| ! | TTCATGTTTTGCAAGGACAA+GGG | - | chr4.4:50958200-50958219 | MS.gene044747:intron | 35.0% |
| !! | GTTGCTTGTTGTTGAATACT+AGG | + | chr4.4:50958985-50959004 | None:intergenic | 35.0% |
| !! | TGCCATAATAATGTTGGCTT+AGG | + | chr4.4:50957820-50957839 | None:intergenic | 35.0% |
| !!! | TTTTTGTTGCTTGTTTTGGG+GGG | + | chr4.4:50958587-50958606 | None:intergenic | 35.0% |
| ACCAAAGGGAATGGTTATCA+TGG | + | chr4.4:50958307-50958326 | None:intergenic | 40.0% | |
| AGAAAAGGAAGATGACATGC+AGG | - | chr4.4:50959647-50959666 | MS.gene044747:intron | 40.0% | |
| AGATGACTCAATTCCTGAAG+CGG | - | chr4.4:50959845-50959864 | MS.gene044747:intron | 40.0% | |
| AGATGGGGAGTAACATCTAT+TGG | - | chr4.4:50958838-50958857 | MS.gene044747:intron | 40.0% | |
| ATGGGCAAATCTTGCAGATA+TGG | - | chr4.4:50959707-50959726 | MS.gene044747:intron | 40.0% | |
| CAAAGCCAAGGACAAATGAT+TGG | + | chr4.4:50958514-50958533 | None:intergenic | 40.0% | |
| CAGCATCATATTCATCATCC+GGG | + | chr4.4:50958702-50958721 | None:intergenic | 40.0% | |
| CATGCAAGCACAATTTGCAT+GGG | - | chr4.4:50958731-50958750 | MS.gene044747:intron | 40.0% | |
| CATGCTTAGAGAGATGAACA+TGG | - | chr4.4:50957838-50957857 | MS.gene044747:intron | 40.0% | |
| CCAAGGACAAATGATTGGAT+TGG | + | chr4.4:50958509-50958528 | None:intergenic | 40.0% | |
| CCAATCCAATCATTTGTCCT+TGG | - | chr4.4:50958506-50958525 | MS.gene044747:intron | 40.0% | |
| CTTCTGTTGAAGACATGAGA+AGG | - | chr4.4:50958887-50958906 | MS.gene044747:intron | 40.0% | |
| GAAAAATGCATCAGTTCAGC+AGG | - | chr4.4:50959494-50959513 | MS.gene044747:intron | 40.0% | |
| GAAGCAGATATTGAAGACTC+AGG | - | chr4.4:50959549-50959568 | MS.gene044747:intron | 40.0% | |
| GATGACACTGATGGAAAAAC+TGG | - | chr4.4:50957087-50957106 | MS.gene044747:CDS | 40.0% | |
| GCAGCATCATATTCATCATC+CGG | + | chr4.4:50958703-50958722 | None:intergenic | 40.0% | |
| GCTTCTAGATTCACAACTTC+TGG | + | chr4.4:50959408-50959427 | None:intergenic | 40.0% | |
| GGGTTAGATCTATAGGATCA+TGG | - | chr4.4:50958908-50958927 | MS.gene044747:intron | 40.0% | |
| GTAGCTATTGCAAATGCACA+GGG | - | chr4.4:50959268-50959287 | MS.gene044747:intron | 40.0% | |
| TACCTTACCAGAAAAGACTC+TGG | + | chr4.4:50959796-50959815 | None:intergenic | 40.0% | |
| TATGGCACAACTCTTCATTC+AGG | + | chr4.4:50959179-50959198 | None:intergenic | 40.0% | |
| TATGTCCCTAAGAAGAACCA+AGG | - | chr4.4:50959381-50959400 | MS.gene044747:intron | 40.0% | |
| TCCATGATAACCATTCCCTT+TGG | - | chr4.4:50958303-50958322 | MS.gene044747:intron | 40.0% | |
| TGAATGAAGAGTTGTGCCAT+AGG | - | chr4.4:50959178-50959197 | MS.gene044747:intron | 40.0% | |
| TGTAGCTATTGCAAATGCAC+AGG | - | chr4.4:50959267-50959286 | MS.gene044747:intron | 40.0% | |
| TTACCAGAAAAGACTCTGGA+GGG | + | chr4.4:50959792-50959811 | None:intergenic | 40.0% | |
| TTAGACATTGCTTGATGCAC+TGG | + | chr4.4:50959819-50959838 | None:intergenic | 40.0% | |
| TTCTTTCTCAGGCTTTCAAC+CGG | + | chr4.4:50958790-50958809 | None:intergenic | 40.0% | |
| TTGCATCAAGGGTAATCGTA+GGG | - | chr4.4:50958666-50958685 | MS.gene044747:intron | 40.0% | |
| TTTGCAATTGCTAGTGGAGT+TGG | - | chr4.4:50959066-50959085 | MS.gene044747:CDS | 40.0% | |
| ! | AGGACAAATGATTGGATTGG+CGG | + | chr4.4:50958506-50958525 | None:intergenic | 40.0% |
| ! | GGTTTAGAAGGTGTATAAGG+TGG | + | chr4.4:50958559-50958578 | None:intergenic | 40.0% |
| ! | TTACCCTTGATGCAAGGTTT+TGG | + | chr4.4:50958661-50958680 | None:intergenic | 40.0% |
| ! | TTAGAAGGTGTATAAGGTGG+TGG | + | chr4.4:50958556-50958575 | None:intergenic | 40.0% |
| !! | ACATGGTAAAAGTTGGTGGT+TGG | + | chr4.4:50958468-50958487 | None:intergenic | 40.0% |
| AATACGAATCCATACCTGGG+TGG | + | chr4.4:50959007-50959026 | None:intergenic | 45.0% | |
| AATTCCTGAAGCGGATGATC+AGG | - | chr4.4:50959854-50959873 | MS.gene044747:intron | 45.0% | |
| ACTGCCAAAACCTTGCATCA+AGG | - | chr4.4:50958654-50958673 | MS.gene044747:intron | 45.0% | |
| ATTCCTGAAGCGGATGATCA+GGG | - | chr4.4:50959855-50959874 | MS.gene044747:intron | 45.0% | |
| ATTGGCAATGAATCCTCCAC+TGG | - | chr4.4:50958257-50958276 | MS.gene044747:intron | 45.0% | |
| ATTTGCATGGGAGAGTCATC+TGG | - | chr4.4:50958743-50958762 | MS.gene044747:intron | 45.0% | |
| CAAGGGTTCAAACCCTATTC+CGG | - | chr4.4:50958768-50958787 | MS.gene044747:intron | 45.0% | |
| CTACGATTACCCTTGATGCA+AGG | + | chr4.4:50958667-50958686 | None:intergenic | 45.0% | |
| CTGCCAAAACCTTGCATCAA+GGG | - | chr4.4:50958655-50958674 | MS.gene044747:intron | 45.0% | |
| CTTACCAGAAAAGACTCTGG+AGG | + | chr4.4:50959793-50959812 | None:intergenic | 45.0% | |
| CTTGCATCAAGGGTAATCGT+AGG | - | chr4.4:50958665-50958684 | MS.gene044747:intron | 45.0% | |
| GAAAGAAGCTGTCTGTGATG+TGG | - | chr4.4:50958803-50958822 | MS.gene044747:intron | 45.0% | |
| GAATGCTAGCAGCTCAGAAA+AGG | - | chr4.4:50959632-50959651 | MS.gene044747:intron | 45.0% | |
| GATTCACAACTTCTGGACCT+TGG | + | chr4.4:50959401-50959420 | None:intergenic | 45.0% | |
| GCATGCAAGCACAATTTGCA+TGG | - | chr4.4:50958730-50958749 | MS.gene044747:intron | 45.0% | |
| GGAATAGGGTTTGAACCCTT+GGG | + | chr4.4:50958769-50958788 | None:intergenic | 45.0% | |
| GGACATAAACAGGAGCAACA+GGG | + | chr4.4:50959368-50959387 | None:intergenic | 45.0% | |
| GGATCATGGAACTTAAACCC+TGG | - | chr4.4:50958922-50958941 | MS.gene044747:intron | 45.0% | |
| GTGGTTGGCGGTGTAAAATA+AGG | + | chr4.4:50958453-50958472 | None:intergenic | 45.0% | |
| TACAAGGGCAGTTGCTTGAA+TGG | + | chr4.4:50958061-50958080 | None:intergenic | 45.0% | |
| TAGTGGCGTAGATAGAGTGA+TGG | - | chr4.4:50957687-50957706 | MS.gene044747:CDS | 45.0% | |
| TCACAGACAGCTTCTTTCTC+AGG | + | chr4.4:50958801-50958820 | None:intergenic | 45.0% | |
| TCACTCTATCTACGCCACTA+AGG | + | chr4.4:50957687-50957706 | None:intergenic | 45.0% | |
| TCAGGCTTTCAACCGGAATA+GGG | + | chr4.4:50958783-50958802 | None:intergenic | 45.0% | |
| TTCTCCCAAACCCATTCCAT+CGG | + | chr4.4:50958037-50958056 | None:intergenic | 45.0% | |
| ! | CTGGACCTTGGTTCTTCTTA+GGG | + | chr4.4:50959389-50959408 | None:intergenic | 45.0% |
| ! | GTGGAACAGCTTCGTTTTGA+AGG | + | chr4.4:50958537-50958556 | None:intergenic | 45.0% |
| ! | TCTGGACCTTGGTTCTTCTT+AGG | + | chr4.4:50959390-50959409 | None:intergenic | 45.0% |
| !! | ACAAATGATTGGATTGGCGG+TGG | + | chr4.4:50958503-50958522 | None:intergenic | 45.0% |
| !! | CTCCAGAGTCTTTTCTGGTA+AGG | - | chr4.4:50959791-50959810 | MS.gene044747:intron | 45.0% |
| !! | TGATGCAAGGTTTTGGCAGT+TGG | + | chr4.4:50958654-50958673 | None:intergenic | 45.0% |
| !! | TGGTAAAAGTTGGTGGTTGG+CGG | + | chr4.4:50958465-50958484 | None:intergenic | 45.0% |
| !!! | TCGTTTTGAAGGCAAAGCCA+AGG | + | chr4.4:50958526-50958545 | None:intergenic | 45.0% |
| AACAAGCAACCACCCAGGTA+TGG | - | chr4.4:50958995-50959014 | MS.gene044747:CDS | 50.0% | |
| AATGGAGGAATCCTTGCCGA+TGG | - | chr4.4:50958018-50958037 | MS.gene044747:intron | 50.0% | |
| AGGAATCCTTGCCGATGGAA+TGG | - | chr4.4:50958023-50958042 | MS.gene044747:intron | 50.0% | |
| AGGGCTGAAATCCTTTGACC+AGG | + | chr4.4:50958965-50958984 | None:intergenic | 50.0% | |
| CGGAATAGGGTTTGAACCCT+TGG | + | chr4.4:50958770-50958789 | None:intergenic | 50.0% | |
| CTCAGGCTTTCAACCGGAAT+AGG | + | chr4.4:50958784-50958803 | None:intergenic | 50.0% | |
| GCGGACATGGTAAAAGTTGG+TGG | + | chr4.4:50958472-50958491 | None:intergenic | 50.0% | |
| GGAATCCTTGCCGATGGAAT+GGG | - | chr4.4:50958024-50958043 | MS.gene044747:intron | 50.0% | |
| GGGACATAAACAGGAGCAAC+AGG | + | chr4.4:50959369-50959388 | None:intergenic | 50.0% | |
| TCAACAACAAGCAACCACCC+AGG | - | chr4.4:50958990-50959009 | MS.gene044747:intron | 50.0% | |
| TCGTAGGGCTATACAGATCC+CGG | - | chr4.4:50958681-50958700 | MS.gene044747:intron | 50.0% | |
| TGGGGGGTGATAGGTTTAGA+AGG | + | chr4.4:50958571-50958590 | None:intergenic | 50.0% | |
| ! | CTTGCCGATGGAATGGGTTT+GGG | - | chr4.4:50958030-50958049 | MS.gene044747:intron | 50.0% |
| !! | GGTTTTGGCAGTTGGCTGAA+CGG | + | chr4.4:50958646-50958665 | None:intergenic | 50.0% |
| !!! | TGCTTGTTTTGGGGGGTGAT+AGG | + | chr4.4:50958580-50958599 | None:intergenic | 50.0% |
| AAGCCCTGATCATCCGCTTC+AGG | + | chr4.4:50959861-50959880 | None:intergenic | 55.0% | |
| CCAAACCCATTCCATCGGCA+AGG | + | chr4.4:50958032-50958051 | None:intergenic | 55.0% | |
| GCGGCGGACATGGTAAAAGT+TGG | + | chr4.4:50958475-50958494 | None:intergenic | 55.0% | |
| ! | CCTTGCCGATGGAATGGGTT+TGG | - | chr4.4:50958029-50958048 | MS.gene044747:intron | 55.0% |
| ! | GCTCCCTCCAGAGTCTTTTC+TGG | - | chr4.4:50959786-50959805 | MS.gene044747:intron | 55.0% |
| !! | TGGATTGGCGGTGGTGTTAG+CGG | + | chr4.4:50958494-50958513 | None:intergenic | 55.0% |
| GGGAGAGTCATCTGGCCCAA+GGG | - | chr4.4:50958751-50958770 | MS.gene044747:intron | 60.0% | |
| TGGGAGAGTCATCTGGCCCA+AGG | - | chr4.4:50958750-50958769 | MS.gene044747:intron | 60.0% | |
| ! | ATTGGCGGTGGTGTTAGCGG+CGG | + | chr4.4:50958491-50958510 | None:intergenic | 60.0% |
| ! | GGTGGTGTTAGCGGCGGACA+TGG | + | chr4.4:50958485-50958504 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50957084 | 50960001 | 50957084 | ID=MS.gene044747 |
| chr4.4 | mRNA | 50957084 | 50960001 | 50957084 | ID=MS.gene044747.t1;Parent=MS.gene044747 |
| chr4.4 | exon | 50959917 | 50960001 | 50959917 | ID=MS.gene044747.t1.exon1;Parent=MS.gene044747.t1 |
| chr4.4 | CDS | 50959917 | 50960001 | 50959917 | ID=cds.MS.gene044747.t1;Parent=MS.gene044747.t1 |
| chr4.4 | exon | 50958995 | 50959162 | 50958995 | ID=MS.gene044747.t1.exon2;Parent=MS.gene044747.t1 |
| chr4.4 | CDS | 50958995 | 50959162 | 50958995 | ID=cds.MS.gene044747.t1;Parent=MS.gene044747.t1 |
| chr4.4 | exon | 50957084 | 50957796 | 50957084 | ID=MS.gene044747.t1.exon3;Parent=MS.gene044747.t1 |
| chr4.4 | CDS | 50957084 | 50957796 | 50957084 | ID=cds.MS.gene044747.t1;Parent=MS.gene044747.t1 |
| Gene Sequence |
| Protein sequence |
