Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044763.t1 | XP_024636344.1 | 89.6 | 747 | 73 | 3 | 1 | 742 | 1 | 747 | 0.00E+00 | 1349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044763.t1 | Q9FQ03 | 46.3 | 842 | 326 | 17 | 1 | 734 | 1 | 824 | 1.0e-189 | 665.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044763.t1 | G7JH90 | 88.0 | 744 | 69 | 3 | 1 | 742 | 1 | 726 | 0.0e+00 | 1313.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene044763.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044763.t1 | MTR_4g051920 | 88.710 | 744 | 64 | 3 | 1 | 742 | 1 | 726 | 0.0 | 1345 |
| MS.gene044763.t1 | MTR_4g052000 | 96.522 | 460 | 16 | 0 | 744 | 1203 | 1 | 460 | 0.0 | 916 |
| MS.gene044763.t1 | MTR_7g114570 | 42.391 | 828 | 316 | 19 | 1 | 756 | 1 | 739 | 0.0 | 580 |
| MS.gene044763.t1 | MTR_7g114570 | 42.359 | 831 | 323 | 21 | 1 | 756 | 1 | 750 | 0.0 | 579 |
| MS.gene044763.t1 | MTR_1g105110 | 57.895 | 456 | 181 | 7 | 749 | 1200 | 12 | 460 | 5.82e-163 | 493 |
| MS.gene044763.t1 | MTR_3g113800 | 56.500 | 200 | 87 | 0 | 872 | 1071 | 93 | 292 | 1.29e-66 | 229 |
| MS.gene044763.t1 | MTR_3g113800 | 57.513 | 193 | 82 | 0 | 872 | 1064 | 93 | 285 | 1.63e-65 | 224 |
| MS.gene044763.t1 | MTR_4g106540 | 46.269 | 67 | 36 | 0 | 881 | 947 | 17 | 83 | 9.62e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044763.t1 | AT1G75660 | 46.310 | 840 | 325 | 15 | 1 | 732 | 1 | 822 | 0.0 | 660 |
| MS.gene044763.t1 | AT5G42540 | 45.618 | 833 | 335 | 15 | 1 | 732 | 1 | 816 | 0.0 | 649 |
| MS.gene044763.t1 | AT5G42540 | 45.024 | 844 | 335 | 16 | 1 | 732 | 1 | 827 | 0.0 | 640 |
| MS.gene044763.t1 | AT1G54490 | 43.243 | 814 | 312 | 15 | 1 | 742 | 1 | 736 | 0.0 | 611 |
| MS.gene044763.t1 | AT1G54490 | 43.378 | 740 | 290 | 12 | 58 | 742 | 13 | 678 | 0.0 | 558 |
| MS.gene044763.t1 | AT5G22220 | 58.124 | 437 | 150 | 11 | 762 | 1176 | 13 | 438 | 2.03e-147 | 452 |
| MS.gene044763.t1 | AT5G22220 | 58.124 | 437 | 147 | 12 | 762 | 1176 | 13 | 435 | 8.14e-146 | 448 |
| MS.gene044763.t1 | AT2G36010 | 52.874 | 435 | 159 | 11 | 762 | 1166 | 39 | 457 | 2.88e-128 | 402 |
| MS.gene044763.t1 | AT2G36010 | 52.860 | 437 | 158 | 12 | 762 | 1166 | 39 | 459 | 6.85e-127 | 399 |
| MS.gene044763.t1 | AT2G36010 | 43.305 | 478 | 170 | 14 | 762 | 1166 | 39 | 488 | 4.30e-94 | 311 |
| MS.gene044763.t1 | AT1G47870 | 50.000 | 278 | 99 | 4 | 880 | 1157 | 153 | 390 | 5.76e-73 | 249 |
| MS.gene044763.t1 | AT1G47870 | 50.000 | 278 | 99 | 4 | 880 | 1157 | 154 | 391 | 6.73e-73 | 248 |
| MS.gene044763.t1 | AT5G14960 | 41.892 | 74 | 43 | 0 | 874 | 947 | 6 | 79 | 3.59e-11 | 67.0 |
Find 253 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACGAATTTCATCGTATT+TGG | 0.150872 | 4.1:+45903268 | None:intergenic |
| TTCTGGACTGGGTGGAAATT+TGG | 0.170746 | 4.1:+45890364 | None:intergenic |
| TGGAGCTTTAATTGCTATTA+AGG | 0.174915 | 4.1:+45890796 | None:intergenic |
| TCCATTTGCTTCGGACTTAA+AGG | 0.176185 | 4.1:-45900261 | MS.gene044763:CDS |
| ATTTCCTTCCCTTTATCTTC+TGG | 0.188827 | 4.1:+45890305 | None:intergenic |
| AACACGGTTCACTGTTTATA+TGG | 0.203040 | 4.1:-45902720 | MS.gene044763:CDS |
| AGTCAGCATTATAATCGTTT+TGG | 0.237014 | 4.1:-45898868 | MS.gene044763:CDS |
| TCAATATTTGAAGCATGATT+TGG | 0.248499 | 4.1:+45889679 | None:intergenic |
| TTTCCTTCCCTTTATCTTCT+GGG | 0.249433 | 4.1:+45890306 | None:intergenic |
| ATCTTCATTTGTTTCTTTGC+TGG | 0.261003 | 4.1:-45901943 | MS.gene044763:CDS |
| CGGCGGTGGCGGGAGGAGTT+CGG | 0.263074 | 4.1:+45895155 | None:intergenic |
| CCACCAACATTGAGCTAAAA+AGG | 0.271417 | 4.1:-45900818 | MS.gene044763:CDS |
| CAATAGATGTTTACCTTGTT+AGG | 0.273630 | 4.1:-45890599 | MS.gene044763:intron |
| CTGGTCCGGCGCGGCGGTGG+CGG | 0.277114 | 4.1:+45895144 | None:intergenic |
| TTGTTAACTTTGTTAACTTC+TGG | 0.286522 | 4.1:+45890347 | None:intergenic |
| TGCAGAGTGATGCTGATTAC+TGG | 0.287148 | 4.1:-45889972 | MS.gene044763:intron |
| AAAGAACTTGCCCTGCTTCC+AGG | 0.295888 | 4.1:-45890943 | MS.gene044763:intron |
| TCTGCCTTACATGCCATCTT+TGG | 0.301645 | 4.1:-45901911 | MS.gene044763:CDS |
| GCCTCGCAAGCTATTGTATA+TGG | 0.302733 | 4.1:-45904159 | MS.gene044763:CDS |
| GGACTATCCTGTATCTTCTC+TGG | 0.310480 | 4.1:+45890640 | None:intergenic |
| CAATATTTGAAGCATGATTT+GGG | 0.315454 | 4.1:+45889680 | None:intergenic |
| TTATCTGATGCTAATGTTCC+TGG | 0.318479 | 4.1:-45902807 | MS.gene044763:CDS |
| CTAACAAGGTAAACATCTAT+TGG | 0.320099 | 4.1:+45890600 | None:intergenic |
| ATCAATTGTGCATAGGCTTT+AGG | 0.320131 | 4.1:+45900042 | None:intergenic |
| GGCGGTGGCGGGAGGAGTTC+GGG | 0.323869 | 4.1:+45895156 | None:intergenic |
| GCCGGTTGGATGAACAAATA+AGG | 0.325041 | 4.1:-45891246 | MS.gene044763:intron |
| TGGTCCGGCGCGGCGGTGGC+GGG | 0.337037 | 4.1:+45895145 | None:intergenic |
| GGATATCCTCTGATCCATTA+TGG | 0.339612 | 4.1:-45902982 | MS.gene044763:CDS |
| CAAACCCCTGGATCAAATAT+TGG | 0.340323 | 4.1:-45892704 | MS.gene044763:intron |
| TTGTTGTTGCTATCATCATT+AGG | 0.343938 | 4.1:+45904349 | None:intergenic |
| GACACTTCACATTCTTGTTT+AGG | 0.353004 | 4.1:+45903082 | None:intergenic |
| TCTGTTCAGACGCCTGTATC+TGG | 0.353596 | 4.1:-45892785 | MS.gene044763:CDS |
| TGTATGCAAACTTCCATATA+TGG | 0.356068 | 4.1:-45899719 | MS.gene044763:CDS |
| TTGAACCGCATTGGAGCATT+TGG | 0.362324 | 4.1:+45902153 | None:intergenic |
| GAAATTCAGTTGAAGTTGAT+AGG | 0.363011 | 4.1:-45899542 | MS.gene044763:CDS |
| AACTTTGTTAACTTCTGGAC+TGG | 0.365621 | 4.1:+45890352 | None:intergenic |
| TCTTCTGGGACCACAGTTGA+TGG | 0.368300 | 4.1:+45890320 | None:intergenic |
| TTCCCCGCCTTTCCAGATAC+AGG | 0.368366 | 4.1:+45892773 | None:intergenic |
| TCCTCTTAAATTACCTCATC+AGG | 0.378875 | 4.1:+45890746 | None:intergenic |
| TTAATGTCTTCAAACACCTT+TGG | 0.379530 | 4.1:+45904451 | None:intergenic |
| TTGAAGCTGATTCAGGTGAT+AGG | 0.380824 | 4.1:-45892841 | MS.gene044763:CDS |
| TAATGCTGCTGACACATTAG+AGG | 0.382091 | 4.1:-45891878 | MS.gene044763:intron |
| CATGTTCGGCACCTCTTATC+TGG | 0.384581 | 4.1:-45899118 | MS.gene044763:CDS |
| ACCATAACACCCTTCCATAA+TGG | 0.385087 | 4.1:+45902968 | None:intergenic |
| CCATTTGCTTCGGACTTAAA+GGG | 0.386749 | 4.1:-45900260 | MS.gene044763:CDS |
| TCTTGAATCCGGCGGTGGTC+AGG | 0.388999 | 4.1:+45895043 | None:intergenic |
| TGTCGATATGACAGCTCATT+AGG | 0.389268 | 4.1:-45892463 | MS.gene044763:intron |
| ACCTTATTTGTTCATCCAAC+CGG | 0.394452 | 4.1:+45891245 | None:intergenic |
| GAGGTTTCATGGAGGAGAAA+GGG | 0.395991 | 4.1:+45895101 | None:intergenic |
| GACTATCCTGTATCTTCTCT+GGG | 0.396885 | 4.1:+45890641 | None:intergenic |
| TCAAGAGTTATATTTCTTCA+AGG | 0.402191 | 4.1:-45903003 | MS.gene044763:CDS |
| TTGGGCCCATTGTGCTTCTC+AGG | 0.407562 | 4.1:+45890619 | None:intergenic |
| TCAATTTGAAGAGAAGTTTG+AGG | 0.408550 | 4.1:-45890411 | MS.gene044763:CDS |
| GGAGGTTTCATGGAGGAGAA+AGG | 0.410632 | 4.1:+45895100 | None:intergenic |
| AAGCTATTGTATATGGCTAT+TGG | 0.413300 | 4.1:-45904152 | MS.gene044763:intron |
| CAGTTTCGAGGTCTTGAATC+CGG | 0.415961 | 4.1:+45895032 | None:intergenic |
| TGAGATAGAAATGAAGATAC+AGG | 0.417312 | 4.1:-45902016 | MS.gene044763:CDS |
| TAAACCGTCTAGTCCTTTGC+TGG | 0.424583 | 4.1:+45903297 | None:intergenic |
| CTTCCTCAGTCTCTCTTCCT+CGG | 0.425369 | 4.1:+45903135 | None:intergenic |
| TAGATAAAATTAGGAACTGT+TGG | 0.427627 | 4.1:-45900885 | MS.gene044763:CDS |
| ACTGAGGAAGGAATTTGAAA+TGG | 0.428253 | 4.1:-45903122 | MS.gene044763:CDS |
| ACAAATGTTCTTGAAGGGAT+TGG | 0.428377 | 4.1:-45891749 | MS.gene044763:CDS |
| TCCATTATGGAAGGGTGTTA+TGG | 0.432134 | 4.1:-45902969 | MS.gene044763:intron |
| TAACAAGGTAAACATCTATT+GGG | 0.432965 | 4.1:+45890601 | None:intergenic |
| TTGGCTGCTGCAGTGGATCC+AGG | 0.433496 | 4.1:+45892812 | None:intergenic |
| GATCTGGTCCGGCGCGGCGG+TGG | 0.433940 | 4.1:+45895141 | None:intergenic |
| TGCTCCTTCAACAACATTTG+TGG | 0.434639 | 4.1:-45904234 | MS.gene044763:CDS |
| GGTTCACTGTTTATATGGAT+TGG | 0.435103 | 4.1:-45902715 | MS.gene044763:intron |
| ACGTTCTGTTCTCCACATAT+CGG | 0.435938 | 4.1:+45889921 | None:intergenic |
| AATTGAAAATTTAACAATTG+AGG | 0.437163 | 4.1:-45891272 | MS.gene044763:CDS |
| TATTCACCAATATTTGATCC+AGG | 0.437164 | 4.1:+45892698 | None:intergenic |
| TTGAGGCTTCATCCTACAGT+AGG | 0.437988 | 4.1:+45889634 | None:intergenic |
| TCCTCCCGCCACCGCCGCGC+CGG | 0.438568 | 4.1:-45895149 | MS.gene044763:CDS |
| GGAAATAATCTCACCCCTGC+TGG | 0.438993 | 4.1:-45892490 | MS.gene044763:CDS |
| CAACGATAGCTTCAGTTTCG+AGG | 0.445150 | 4.1:+45895020 | None:intergenic |
| GATATTACAAATGTTCTTGA+AGG | 0.450884 | 4.1:-45891755 | MS.gene044763:CDS |
| AAATGCTCCAATGCGGTTCA+AGG | 0.452840 | 4.1:-45902151 | MS.gene044763:intron |
| GGAGAGAAAGGGAGGTTTCA+TGG | 0.452955 | 4.1:+45895090 | None:intergenic |
| CCCTTTAAGTCCGAAGCAAA+TGG | 0.454665 | 4.1:+45900260 | None:intergenic |
| AGTTGAAGTTGATAGGTTGT+TGG | 0.457586 | 4.1:-45899535 | MS.gene044763:CDS |
| TGCTTCGGACTTAAAGGGCA+TGG | 0.458359 | 4.1:-45900255 | MS.gene044763:CDS |
| CCACTATGGTCCATTTGCTT+CGG | 0.459238 | 4.1:-45900270 | MS.gene044763:CDS |
| TGGTGTAAACCTTCCAGAAA+AGG | 0.459319 | 4.1:-45899098 | MS.gene044763:intron |
| TTTGCATATTTGGTTGTTGA+GGG | 0.461938 | 4.1:-45902046 | MS.gene044763:CDS |
| TATAAACAGTGAACCGTGTT+CGG | 0.463074 | 4.1:+45902723 | None:intergenic |
| AGTTGATCAAAAGGTAAGAA+TGG | 0.463553 | 4.1:+45900200 | None:intergenic |
| ACCGTGTTCGGATCATAATC+AGG | 0.465301 | 4.1:+45902735 | None:intergenic |
| ACACTTAAAAGTTGATCAAA+AGG | 0.465449 | 4.1:+45900191 | None:intergenic |
| CTGTGGTCCCAGAAGATAAA+GGG | 0.466071 | 4.1:-45890313 | MS.gene044763:CDS |
| AGGCGTCTGAACAGAACTAT+TGG | 0.467482 | 4.1:+45892793 | None:intergenic |
| TCATATCGACATGGACCAGC+AGG | 0.470858 | 4.1:+45892475 | None:intergenic |
| GTTGACGTTGCTGCATGATC+TGG | 0.476646 | 4.1:+45895125 | None:intergenic |
| ATCGCCGGCAGGTGGATGTC+GGG | 0.477202 | 4.1:-45895181 | MS.gene044763:intron |
| ACTTCCACAAATGTTGTTGA+AGG | 0.478416 | 4.1:+45904230 | None:intergenic |
| CATCGCCGGCAGGTGGATGT+CGG | 0.479471 | 4.1:-45895182 | MS.gene044763:intron |
| ACGCCTGTATCTGGAAAGGC+GGG | 0.480089 | 4.1:-45892776 | MS.gene044763:CDS |
| TAAGTGTTCTCCCTCAAAAG+AGG | 0.480997 | 4.1:-45900175 | MS.gene044763:intron |
| ATAAAATTATGTCATTCATA+AGG | 0.481208 | 4.1:-45902773 | MS.gene044763:CDS |
| TAATCCATTCTTGAGTTCGC+TGG | 0.481878 | 4.1:+45899672 | None:intergenic |
| AATTAAACCTTGAACCGCAT+TGG | 0.483273 | 4.1:+45902144 | None:intergenic |
| ATATCCAAAGATGGCATGTA+AGG | 0.484608 | 4.1:+45901907 | None:intergenic |
| TAAATTACCTCATCAGGATC+AGG | 0.485605 | 4.1:+45890752 | None:intergenic |
| ATAATCTCCGGCGGAGAGAA+AGG | 0.486445 | 4.1:+45895078 | None:intergenic |
| CAGGAGTTGCTTCATGGACA+TGG | 0.488947 | 4.1:-45900546 | MS.gene044763:intron |
| TGTATCTGGAAAGGCGGGGA+AGG | 0.492656 | 4.1:-45892771 | MS.gene044763:CDS |
| TCCGGCGCGGCGGTGGCGGG+AGG | 0.494668 | 4.1:+45895148 | None:intergenic |
| TGCGAAGCGGTGATAATCTC+CGG | 0.499792 | 4.1:+45895066 | None:intergenic |
| AGGGAAACTAACCTGGAAGC+AGG | 0.501301 | 4.1:+45890932 | None:intergenic |
| GGCAGCTTCTCATTATAGTC+AGG | 0.502417 | 4.1:+45902177 | None:intergenic |
| ATATTACAAATGTTCTTGAA+GGG | 0.502697 | 4.1:-45891754 | MS.gene044763:CDS |
| ACTTTGTTAACTTCTGGACT+GGG | 0.504154 | 4.1:+45890353 | None:intergenic |
| TGTGTCTACAGGTGCAAAAG+AGG | 0.505867 | 4.1:-45891787 | MS.gene044763:intron |
| AGCTCCACATGGTACCACTT+TGG | 0.505985 | 4.1:-45890780 | MS.gene044763:CDS |
| ACTCACGAAGTCGTGATTGT+TGG | 0.507659 | 4.1:+45890238 | None:intergenic |
| AACAATCACGACTTCGTGAG+TGG | 0.509503 | 4.1:-45890236 | MS.gene044763:CDS |
| ACTGTGGTCCCAGAAGATAA+AGG | 0.510416 | 4.1:-45890314 | MS.gene044763:CDS |
| TGAGGCTTCATCCTACAGTA+GGG | 0.512617 | 4.1:+45889635 | None:intergenic |
| AAACTATCATCGGCCTCCCC+TGG | 0.512893 | 4.1:+45891577 | None:intergenic |
| AAACCTCCCTTTCTCTCCGC+CGG | 0.513017 | 4.1:-45895085 | MS.gene044763:CDS |
| AGGAAAGCGCTTCATGTGGC+AGG | 0.513892 | 4.1:-45899879 | MS.gene044763:intron |
| CGAGGTCTTGAATCCGGCGG+TGG | 0.515536 | 4.1:+45895038 | None:intergenic |
| GATGCTGATCTTATAATGCT+TGG | 0.516302 | 4.1:-45902605 | MS.gene044763:CDS |
| GGGCTGGATGTTTCAAAACC+AGG | 0.516489 | 4.1:-45891595 | MS.gene044763:CDS |
| TGTTGCTATCATCATTAGGA+TGG | 0.516700 | 4.1:+45904353 | None:intergenic |
| TTTAGCAGCGACGGCATTGG+AGG | 0.516743 | 4.1:-45899319 | MS.gene044763:intron |
| GCTTCGGACTTAAAGGGCAT+GGG | 0.518549 | 4.1:-45900254 | MS.gene044763:CDS |
| AGCAAATGCATAAAAGAGAA+AGG | 0.519730 | 4.1:-45901107 | MS.gene044763:CDS |
| ATGCTAATGTTCCTGGAGAA+GGG | 0.520161 | 4.1:-45902800 | MS.gene044763:CDS |
| ATAGTCCTGAGAAGCACAAT+GGG | 0.520665 | 4.1:-45890624 | MS.gene044763:CDS |
| AGAACTATTGGCTGCTGCAG+TGG | 0.520736 | 4.1:+45892805 | None:intergenic |
| TGCTGCATGAATTCTGTCCC+TGG | 0.521072 | 4.1:+45903040 | None:intergenic |
| GAAACCAGCGAACTCAAGAA+TGG | 0.521588 | 4.1:-45899676 | MS.gene044763:CDS |
| GATGCTAATGTTCCTGGAGA+AGG | 0.521838 | 4.1:-45902801 | MS.gene044763:CDS |
| ACCTCGTGAATATCCAAAGA+TGG | 0.523973 | 4.1:+45901898 | None:intergenic |
| GTCAAATACGAGCATCCTGC+TGG | 0.524098 | 4.1:-45899151 | MS.gene044763:CDS |
| TCAGGTGATAGGATGACTCC+TGG | 0.524104 | 4.1:-45892830 | MS.gene044763:CDS |
| TATTTACAGCTGGAGAAGAA+TGG | 0.525182 | 4.1:-45889759 | MS.gene044763:intron |
| GTATCTGGAAAGGCGGGGAA+GGG | 0.525349 | 4.1:-45892770 | MS.gene044763:CDS |
| AGCCTATGCACAATTGATGT+TGG | 0.525564 | 4.1:-45900037 | MS.gene044763:CDS |
| ATTATCCCCAGAGAAGATAC+AGG | 0.527897 | 4.1:-45890647 | MS.gene044763:CDS |
| AACCGCATTGGAGCATTTGG+TGG | 0.529158 | 4.1:+45902156 | None:intergenic |
| ACAAGGTGGACACAAGCATA+AGG | 0.533115 | 4.1:-45899464 | MS.gene044763:intron |
| AACAATTGAGGAACGCCGGT+TGG | 0.534246 | 4.1:-45891260 | MS.gene044763:CDS |
| ACTTCAAGAAGAATATTGTA+TGG | 0.535285 | 4.1:-45889722 | MS.gene044763:CDS |
| AAAGGCGACTTGTTTAAAAG+TGG | 0.535755 | 4.1:-45901089 | MS.gene044763:CDS |
| ATTCACCAATATTTGATCCA+GGG | 0.536912 | 4.1:+45892699 | None:intergenic |
| GAAGGTTTACACCAGATAAG+AGG | 0.537906 | 4.1:+45899107 | None:intergenic |
| GTACACTGAAGGATTGTTGT+GGG | 0.539897 | 4.1:-45900587 | MS.gene044763:CDS |
| GCTTCATCCTACAGTAGGGT+TGG | 0.540759 | 4.1:+45889639 | None:intergenic |
| ACAGAATGCATGTGATTACA+TGG | 0.542418 | 4.1:-45901352 | MS.gene044763:CDS |
| TTCACCAATATTTGATCCAG+GGG | 0.542521 | 4.1:+45892700 | None:intergenic |
| CTGGTGGTACAAGTCATGTT+CGG | 0.544677 | 4.1:-45899132 | MS.gene044763:CDS |
| AGGAAGGAATTTGAAATGGA+AGG | 0.549315 | 4.1:-45903118 | MS.gene044763:CDS |
| CATTTGAAGTGTTTGTGTCA+AGG | 0.550233 | 4.1:+45904428 | None:intergenic |
| ATCCTCTGATCCATTATGGA+AGG | 0.552359 | 4.1:-45902978 | MS.gene044763:CDS |
| ACTTCGTCTTTGATCTTGAG+CGG | 0.552614 | 4.1:-45901981 | MS.gene044763:CDS |
| CGTTGCTGCATGATCTGGTC+CGG | 0.555254 | 4.1:+45895130 | None:intergenic |
| AGAACTGGAACTCAAACCCC+TGG | 0.557244 | 4.1:-45892716 | MS.gene044763:CDS |
| CTCGCTTAAATTAAACAAGG+TGG | 0.563669 | 4.1:-45899478 | MS.gene044763:CDS |
| CATGATCTGGTCCGGCGCGG+CGG | 0.564187 | 4.1:+45895138 | None:intergenic |
| GTGCAGAGACAAGATGGTGA+AGG | 0.564861 | 4.1:-45890278 | MS.gene044763:CDS |
| TCTGGAAAGGCGGGGAAGGG+AGG | 0.567142 | 4.1:-45892767 | MS.gene044763:CDS |
| ACATGACTTGTACCACCAGC+AGG | 0.569156 | 4.1:+45899136 | None:intergenic |
| TAATCTCCGGCGGAGAGAAA+GGG | 0.570236 | 4.1:+45895079 | None:intergenic |
| ATAGAAGTGCAGAGACAAGA+TGG | 0.570446 | 4.1:-45890284 | MS.gene044763:CDS |
| GGCTGGATGTTTCAAAACCA+GGG | 0.577072 | 4.1:-45891594 | MS.gene044763:CDS |
| GCTTCGCACCTGACCACCGC+CGG | 0.580875 | 4.1:-45895051 | MS.gene044763:CDS |
| ATGTTAGCATAACCGATATG+TGG | 0.584905 | 4.1:-45889933 | MS.gene044763:CDS |
| TTAATAAAACAAGCAGAGGA+TGG | 0.586297 | 4.1:-45891916 | MS.gene044763:CDS |
| TGCTAATGTTCCTGGAGAAG+GGG | 0.588627 | 4.1:-45902799 | MS.gene044763:CDS |
| CGAGTTAATAAAACAAGCAG+AGG | 0.589364 | 4.1:-45891920 | MS.gene044763:CDS |
| GCTGGATGTTTCAAAACCAG+GGG | 0.589441 | 4.1:-45891593 | MS.gene044763:CDS |
| GCCATATACAATAGCTTGCG+AGG | 0.591780 | 4.1:+45904158 | None:intergenic |
| AACATTAAGCATACCTAACA+AGG | 0.592586 | 4.1:+45890586 | None:intergenic |
| GGGAGATGCAAGAAAGACTA+CGG | 0.594499 | 4.1:-45891128 | MS.gene044763:CDS |
| AGACTGAGGACAAACATTGT+CGG | 0.594878 | 4.1:+45901272 | None:intergenic |
| GATTCAAATATTATAACACC+AGG | 0.602504 | 4.1:-45903058 | MS.gene044763:CDS |
| ACAGTAGGGTTGGATGCAGA+AGG | 0.603796 | 4.1:+45889649 | None:intergenic |
| AGTACACTGAAGGATTGTTG+TGG | 0.604142 | 4.1:-45900588 | MS.gene044763:CDS |
| ATGCTTACAGCAACATCTGA+AGG | 0.604268 | 4.1:+45890197 | None:intergenic |
| GACGCCTGTATCTGGAAAGG+CGG | 0.604699 | 4.1:-45892777 | MS.gene044763:CDS |
| ATTTAACAATTGAGGAACGC+CGG | 0.605519 | 4.1:-45891264 | MS.gene044763:CDS |
| TTAGCAGCGACGGCATTGGA+GGG | 0.605881 | 4.1:-45899318 | MS.gene044763:intron |
| GCAAATGGACCATAGTGGTA+GGG | 0.606211 | 4.1:+45900275 | None:intergenic |
| TGTTGTTCTCAACACACTCG+TGG | 0.606281 | 4.1:+45899281 | None:intergenic |
| GGGGTGAGATTATTTCCTGA+AGG | 0.606593 | 4.1:+45892496 | None:intergenic |
| TCCTCTGATCCATTATGGAA+GGG | 0.606739 | 4.1:-45902977 | MS.gene044763:CDS |
| CATATCGACATGGACCAGCA+GGG | 0.607007 | 4.1:+45892476 | None:intergenic |
| GGGAAACTAACCTGGAAGCA+GGG | 0.607358 | 4.1:+45890933 | None:intergenic |
| ATGCTTCAAATATTGATGAA+CGG | 0.607410 | 4.1:-45889672 | MS.gene044763:CDS |
| TAAACTTGGAGAATATCTTG+TGG | 0.609289 | 4.1:-45901744 | MS.gene044763:CDS |
| ATTCATGCAGCAACTTTCGA+AGG | 0.609533 | 4.1:-45903029 | MS.gene044763:CDS |
| CGAGGAAGAGAGACTGAGGA+AGG | 0.609831 | 4.1:-45903134 | MS.gene044763:CDS |
| TCTGCATCCAACCCTACTGT+AGG | 0.610294 | 4.1:-45889646 | MS.gene044763:CDS |
| TTGTTAACTTCTGGACTGGG+TGG | 0.611129 | 4.1:+45890356 | None:intergenic |
| ATCCAACATCAATTGTGCAT+AGG | 0.611572 | 4.1:+45900035 | None:intergenic |
| GAGCGAAAATGAACCAGCAA+AGG | 0.612334 | 4.1:-45903310 | MS.gene044763:CDS |
| ACATAAATGAGACGATATTG+TGG | 0.612573 | 4.1:-45898900 | MS.gene044763:CDS |
| TGCAGAGACAAGATGGTGAA+GGG | 0.612592 | 4.1:-45890277 | MS.gene044763:CDS |
| ACCCTTCCATAATGGATCAG+AGG | 0.615223 | 4.1:+45902976 | None:intergenic |
| AATATTTGAAGCATGATTTG+GGG | 0.617491 | 4.1:+45889681 | None:intergenic |
| AGCTCAAGAACAGAATTCAG+TGG | 0.618807 | 4.1:-45891712 | MS.gene044763:CDS |
| AGCAAATGGACCATAGTGGT+AGG | 0.618914 | 4.1:+45900274 | None:intergenic |
| GTTGATAGGTTGTTGGTCAG+TGG | 0.622001 | 4.1:-45899528 | MS.gene044763:CDS |
| ATACATTTCAGCAATTGAAG+CGG | 0.622738 | 4.1:-45892883 | MS.gene044763:intron |
| GTCTACAGGTGCAAAAGAGG+AGG | 0.622913 | 4.1:-45891784 | MS.gene044763:intron |
| GATAGTCCTGAGAAGCACAA+TGG | 0.625691 | 4.1:-45890625 | MS.gene044763:CDS |
| CCGAAGCAAATGGACCATAG+TGG | 0.629001 | 4.1:+45900270 | None:intergenic |
| TCCTGATTATGATCCGAACA+CGG | 0.629375 | 4.1:-45902736 | MS.gene044763:CDS |
| GGAAGGGAGGAAAATCCTCT+AGG | 0.631535 | 4.1:-45892754 | MS.gene044763:CDS |
| TTGTTGGTAAGATCTGTACT+AGG | 0.631622 | 4.1:+45890254 | None:intergenic |
| ACAATCACGACTTCGTGAGT+GGG | 0.632953 | 4.1:-45890235 | MS.gene044763:CDS |
| GGATGTTTCAAAACCAGGGG+AGG | 0.633132 | 4.1:-45891590 | MS.gene044763:CDS |
| GTTACTCAACAAATATCCAA+AGG | 0.635055 | 4.1:-45904467 | MS.gene044763:CDS |
| GGAAGTACCTGATCCTGATG+AGG | 0.635583 | 4.1:-45890759 | MS.gene044763:intron |
| TGAACCAGCAAAGGACTAGA+CGG | 0.636674 | 4.1:-45903301 | MS.gene044763:CDS |
| GGCGGTGGTCAGGTGCGAAG+CGG | 0.638045 | 4.1:+45895053 | None:intergenic |
| TTGCTCGCTTAAATTAAACA+AGG | 0.641594 | 4.1:-45899481 | MS.gene044763:CDS |
| AGAAGTTAACAAAGTTAACA+AGG | 0.642145 | 4.1:-45890345 | MS.gene044763:CDS |
| TGACACAAACACTTCAAATG+TGG | 0.644398 | 4.1:-45904425 | MS.gene044763:CDS |
| TGGAGATTTCTTGACTGACA+AGG | 0.644849 | 4.1:-45901069 | MS.gene044763:intron |
| TCAGACGCCTGTATCTGGAA+AGG | 0.645384 | 4.1:-45892780 | MS.gene044763:CDS |
| AGGATCAGGTACTTCCAAAG+TGG | 0.647576 | 4.1:+45890766 | None:intergenic |
| CTGCATGATCTGGTCCGGCG+CGG | 0.652743 | 4.1:+45895135 | None:intergenic |
| TAGGTTCAGAAGTACACTGA+AGG | 0.653526 | 4.1:-45900598 | MS.gene044763:CDS |
| TCATCATTAGGATGGAAACA+AGG | 0.654793 | 4.1:+45904361 | None:intergenic |
| ATATCGACATGGACCAGCAG+GGG | 0.655262 | 4.1:+45892477 | None:intergenic |
| GAGAAGTTTGAGGAGATCCA+CGG | 0.655684 | 4.1:-45890401 | MS.gene044763:CDS |
| TCTCCGGCGGAGAGAAAGGG+AGG | 0.656909 | 4.1:+45895082 | None:intergenic |
| AGTAACCATCTATAAAACGA+TGG | 0.659634 | 4.1:+45904484 | None:intergenic |
| TTTGTATTTATAGGAAGCCG+AGG | 0.659675 | 4.1:-45903152 | MS.gene044763:intron |
| ATATCTTGTGGACATAAACA+AGG | 0.669996 | 4.1:-45901732 | MS.gene044763:intron |
| TAGAAGGAAAGCGCTTCATG+TGG | 0.670368 | 4.1:-45899883 | MS.gene044763:CDS |
| AAATACGAGCATCCTGCTGG+TGG | 0.671206 | 4.1:-45899148 | MS.gene044763:CDS |
| AAGCCGAGGAAGAGAGACTG+AGG | 0.671391 | 4.1:-45903138 | MS.gene044763:CDS |
| CTTACTTCTTCATCAGACTG+AGG | 0.677507 | 4.1:+45901258 | None:intergenic |
| GCCATCTTTGGATATTCACG+AGG | 0.678827 | 4.1:-45901899 | MS.gene044763:intron |
| AAACAGTTAGGGGAGAAACA+TGG | 0.682040 | 4.1:-45901597 | MS.gene044763:intron |
| TTTCGAGGTCTTGAATCCGG+CGG | 0.682874 | 4.1:+45895035 | None:intergenic |
| CATATCGGTTATGCTAACAT+CGG | 0.684451 | 4.1:+45889936 | None:intergenic |
| GGTCCCAGAAGATAAAGGGA+AGG | 0.692159 | 4.1:-45890309 | MS.gene044763:CDS |
| CGCCTGTATCTGGAAAGGCG+GGG | 0.701641 | 4.1:-45892775 | MS.gene044763:CDS |
| AATGAGCTGTCATATCGACA+TGG | 0.710086 | 4.1:+45892466 | None:intergenic |
| ACTATCCTGTATCTTCTCTG+GGG | 0.711189 | 4.1:+45890642 | None:intergenic |
| ACTTCCAAAGTGGTACCATG+TGG | 0.714904 | 4.1:+45890776 | None:intergenic |
| ATAGCAATTAAAGCTCCACA+TGG | 0.715913 | 4.1:-45890791 | MS.gene044763:CDS |
| TAACAAGGATCCATCAACTG+TGG | 0.718425 | 4.1:-45890330 | MS.gene044763:CDS |
| ATTCAAATATTATAACACCA+GGG | 0.720952 | 4.1:-45903057 | MS.gene044763:CDS |
| TGCCACCAAATGCTCCAATG+CGG | 0.723491 | 4.1:-45902158 | MS.gene044763:CDS |
| GAGAAAGGGAGGTTTCATGG+AGG | 0.723613 | 4.1:+45895093 | None:intergenic |
| GAAGCGGTGATAATCTCCGG+CGG | 0.749300 | 4.1:+45895069 | None:intergenic |
| TGGATGCAACATCAACACCG+TGG | 0.767009 | 4.1:+45890384 | None:intergenic |
| TCATTCATAAGGAAACAGCG+TGG | 0.793260 | 4.1:-45902762 | MS.gene044763:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 45889642 | 45904515 | 45889642 | ID=MS.gene044763 |
| chr4.1 | mRNA | 45889642 | 45904515 | 45889642 | ID=MS.gene044763.t1;Parent=MS.gene044763 |
| chr4.1 | exon | 45904348 | 45904515 | 45904348 | ID=MS.gene044763.t1.exon1;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45904348 | 45904515 | 45904348 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45904153 | 45904258 | 45904153 | ID=MS.gene044763.t1.exon2;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45904153 | 45904258 | 45904153 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45903271 | 45903347 | 45903271 | ID=MS.gene044763.t1.exon3;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45903271 | 45903347 | 45903271 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45902970 | 45903161 | 45902970 | ID=MS.gene044763.t1.exon4;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45902970 | 45903161 | 45902970 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45902716 | 45902835 | 45902716 | ID=MS.gene044763.t1.exon5;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45902716 | 45902835 | 45902716 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45902565 | 45902627 | 45902565 | ID=MS.gene044763.t1.exon6;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45902565 | 45902627 | 45902565 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45902152 | 45902205 | 45902152 | ID=MS.gene044763.t1.exon7;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45902152 | 45902205 | 45902152 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45901900 | 45902070 | 45901900 | ID=MS.gene044763.t1.exon8;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45901900 | 45902070 | 45901900 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45901733 | 45901810 | 45901733 | ID=MS.gene044763.t1.exon9;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45901733 | 45901810 | 45901733 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45901464 | 45901613 | 45901464 | ID=MS.gene044763.t1.exon10;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45901464 | 45901613 | 45901464 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45901263 | 45901382 | 45901263 | ID=MS.gene044763.t1.exon11;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45901263 | 45901382 | 45901263 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45901070 | 45901165 | 45901070 | ID=MS.gene044763.t1.exon12;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45901070 | 45901165 | 45901070 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45900809 | 45900904 | 45900809 | ID=MS.gene044763.t1.exon13;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45900809 | 45900904 | 45900809 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45900547 | 45900617 | 45900547 | ID=MS.gene044763.t1.exon14;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45900547 | 45900617 | 45900547 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45900176 | 45900304 | 45900176 | ID=MS.gene044763.t1.exon15;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45900176 | 45900304 | 45900176 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45900001 | 45900077 | 45900001 | ID=MS.gene044763.t1.exon16;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45900001 | 45900077 | 45900001 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45899880 | 45899920 | 45899880 | ID=MS.gene044763.t1.exon17;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45899880 | 45899920 | 45899880 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45899669 | 45899743 | 45899669 | ID=MS.gene044763.t1.exon18;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45899669 | 45899743 | 45899669 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45899465 | 45899580 | 45899465 | ID=MS.gene044763.t1.exon19;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45899465 | 45899580 | 45899465 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45899262 | 45899333 | 45899262 | ID=MS.gene044763.t1.exon20;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45899262 | 45899333 | 45899262 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45899099 | 45899177 | 45899099 | ID=MS.gene044763.t1.exon21;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45899099 | 45899177 | 45899099 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45898865 | 45898938 | 45898865 | ID=MS.gene044763.t1.exon22;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45898865 | 45898938 | 45898865 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45895009 | 45895192 | 45895009 | ID=MS.gene044763.t1.exon23;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45895009 | 45895192 | 45895009 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45892705 | 45892894 | 45892705 | ID=MS.gene044763.t1.exon24;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45892705 | 45892894 | 45892705 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45892464 | 45892523 | 45892464 | ID=MS.gene044763.t1.exon25;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45892464 | 45892523 | 45892464 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45891879 | 45891964 | 45891879 | ID=MS.gene044763.t1.exon26;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45891879 | 45891964 | 45891879 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45891710 | 45891798 | 45891710 | ID=MS.gene044763.t1.exon27;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45891710 | 45891798 | 45891710 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45891564 | 45891618 | 45891564 | ID=MS.gene044763.t1.exon28;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45891564 | 45891618 | 45891564 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45891247 | 45891299 | 45891247 | ID=MS.gene044763.t1.exon29;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45891247 | 45891299 | 45891247 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45891099 | 45891149 | 45891099 | ID=MS.gene044763.t1.exon30;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45891099 | 45891149 | 45891099 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45890944 | 45890992 | 45890944 | ID=MS.gene044763.t1.exon31;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45890944 | 45890992 | 45890944 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45890760 | 45890825 | 45890760 | ID=MS.gene044763.t1.exon32;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45890760 | 45890825 | 45890760 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45890600 | 45890676 | 45890600 | ID=MS.gene044763.t1.exon33;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45890600 | 45890676 | 45890600 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45890205 | 45890433 | 45890205 | ID=MS.gene044763.t1.exon34;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45890205 | 45890433 | 45890205 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45889923 | 45889989 | 45889923 | ID=MS.gene044763.t1.exon35;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45889923 | 45889989 | 45889923 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| chr4.1 | exon | 45889642 | 45889772 | 45889642 | ID=MS.gene044763.t1.exon36;Parent=MS.gene044763.t1 |
| chr4.1 | CDS | 45889642 | 45889772 | 45889642 | ID=cds.MS.gene044763.t1;Parent=MS.gene044763.t1 |
| Gene Sequence |
| Protein sequence |
