Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04479.t1 | XP_013460192.1 | 95.4 | 389 | 17 | 1 | 1 | 388 | 1 | 389 | 4.80E-204 | 720.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04479.t1 | G7ZYI5 | 95.4 | 389 | 17 | 1 | 1 | 388 | 1 | 389 | 3.4e-204 | 720.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04479.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04479.t1 | MTR_3g463270 | 98.201 | 389 | 6 | 1 | 1 | 388 | 1 | 389 | 0.0 | 793 |
| MS.gene04479.t1 | MTR_3g072920 | 49.798 | 247 | 109 | 10 | 146 | 386 | 212 | 449 | 7.31e-64 | 211 |
| MS.gene04479.t1 | MTR_1g024980 | 45.200 | 250 | 111 | 9 | 147 | 388 | 170 | 401 | 5.60e-59 | 197 |
| MS.gene04479.t1 | MTR_4g081420 | 45.000 | 240 | 115 | 8 | 153 | 385 | 205 | 434 | 7.74e-57 | 192 |
| MS.gene04479.t1 | MTR_2g010860 | 35.849 | 265 | 151 | 6 | 132 | 386 | 120 | 375 | 1.04e-43 | 156 |
| MS.gene04479.t1 | MTR_2g010870 | 36.131 | 274 | 145 | 8 | 133 | 386 | 91 | 354 | 3.47e-42 | 152 |
| MS.gene04479.t1 | MTR_5g012220 | 38.426 | 216 | 97 | 7 | 175 | 386 | 105 | 288 | 5.16e-31 | 120 |
| MS.gene04479.t1 | MTR_4g101450 | 37.089 | 213 | 97 | 7 | 178 | 388 | 98 | 275 | 3.66e-30 | 117 |
| MS.gene04479.t1 | MTR_5g094440 | 31.224 | 237 | 128 | 10 | 159 | 387 | 61 | 270 | 2.84e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04479.t1 | AT2G29660 | 55.319 | 329 | 122 | 8 | 73 | 388 | 57 | 373 | 1.91e-111 | 331 |
| MS.gene04479.t1 | AT4G27240 | 41.935 | 279 | 136 | 8 | 115 | 385 | 168 | 428 | 6.62e-58 | 195 |
| MS.gene04479.t1 | AT5G54630 | 42.164 | 268 | 122 | 9 | 133 | 385 | 220 | 469 | 7.54e-58 | 196 |
| MS.gene04479.t1 | AT1G75710 | 42.754 | 276 | 114 | 10 | 144 | 388 | 197 | 459 | 5.35e-57 | 193 |
| MS.gene04479.t1 | AT4G27240 | 41.270 | 252 | 124 | 7 | 115 | 357 | 168 | 404 | 9.11e-49 | 171 |
| MS.gene04479.t1 | AT1G11490 | 35.628 | 247 | 140 | 8 | 150 | 386 | 126 | 363 | 1.53e-35 | 134 |
| MS.gene04479.t1 | AT1G11490 | 35.628 | 247 | 140 | 8 | 150 | 386 | 126 | 363 | 1.53e-35 | 134 |
| MS.gene04479.t1 | AT4G22560 | 34.440 | 241 | 109 | 10 | 153 | 388 | 68 | 264 | 3.16e-28 | 112 |
| MS.gene04479.t1 | AT1G62520 | 33.178 | 214 | 109 | 6 | 176 | 388 | 100 | 280 | 1.49e-23 | 99.4 |
| MS.gene04479.t1 | AT4G12450 | 30.357 | 280 | 128 | 9 | 118 | 388 | 56 | 277 | 3.81e-23 | 98.2 |
Find 108 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGAGAAGGTTCGGTTTC+TGG | 0.131058 | 3.4:-58539897 | None:intergenic |
| TTTGGGAAGGTGTTTGTTTC+AGG | 0.164228 | 3.4:-58540009 | None:intergenic |
| ATAAAACTCTTTCTTCTTCT+TGG | 0.198943 | 3.4:+58539614 | MS.gene04479:CDS |
| ATGTCCCAACTCACATAAAA+AGG | 0.291860 | 3.4:-58540193 | None:intergenic |
| GGTGAAGAGGGTTGTGATAA+AGG | 0.305338 | 3.4:-58539568 | None:intergenic |
| TTCAAGATTCGGTGTATGTT+TGG | 0.305966 | 3.4:-58540027 | None:intergenic |
| ATTTGTGGAATTATTAAATC+AGG | 0.327652 | 3.4:+58540255 | MS.gene04479:CDS |
| TGATGACTGGGTGGTGGGAG+TGG | 0.330208 | 3.4:-58539686 | None:intergenic |
| GCTTCTTCCGTGGTGGGTCT+TGG | 0.343897 | 3.4:-58539786 | None:intergenic |
| CGTGGTGGGTCTTGGAAACT+CGG | 0.356512 | 3.4:-58539778 | None:intergenic |
| GTGGAAATTCCATCTAATTT+CGG | 0.370485 | 3.4:-58540285 | None:intergenic |
| CACGCTGTATCGGAGCTTAT+CGG | 0.371706 | 3.4:+58539937 | MS.gene04479:CDS |
| GTGTTATCGCGGGTCGGGTT+GGG | 0.390583 | 3.4:+58540403 | MS.gene04479:CDS |
| CACGCAATCCCTTATCTCAT+TGG | 0.395281 | 3.4:+58539744 | MS.gene04479:CDS |
| TCAAGATTCGGTGTATGTTT+GGG | 0.399126 | 3.4:-58540026 | None:intergenic |
| GGGTCGGGTTGGGTCAGATT+TGG | 0.399327 | 3.4:+58540413 | MS.gene04479:CDS |
| AGTGCAAATCATCTTCAAAT+CGG | 0.403452 | 3.4:+58539981 | MS.gene04479:CDS |
| CGGATTGCTTCTTCCGTGGT+GGG | 0.415148 | 3.4:-58539792 | None:intergenic |
| CGTGTTATCGCGGGTCGGGT+TGG | 0.422970 | 3.4:+58540402 | MS.gene04479:CDS |
| CTGAGGTGATGACTGGGTGG+TGG | 0.427431 | 3.4:-58539692 | None:intergenic |
| AACTCCCGCTCGATGTCATC+AGG | 0.433180 | 3.4:-58540342 | None:intergenic |
| CTCCGATACAGCGTGGTTTG+CGG | 0.437651 | 3.4:-58539929 | None:intergenic |
| TGTTATGGATCTTCAAGATT+CGG | 0.443222 | 3.4:-58540038 | None:intergenic |
| TGCTTTCACGGTGGTTGTAA+TGG | 0.445907 | 3.4:-58539719 | None:intergenic |
| GGGTCTTGGAAACTCGGGTC+GGG | 0.449711 | 3.4:-58539772 | None:intergenic |
| TGACTGGGTGGTGGGAGTGG+TGG | 0.453479 | 3.4:-58539683 | None:intergenic |
| TATGTGAGTTGGGACATAAC+GGG | 0.454446 | 3.4:+58540199 | MS.gene04479:CDS |
| TCCGGCGGTCGCGGCGGCGA+TGG | 0.455880 | 3.4:-58539497 | None:intergenic |
| TTGTCGTGTTATCGCGGGTC+GGG | 0.457674 | 3.4:+58540398 | MS.gene04479:CDS |
| TTAAGTTCATGAACGTCAAA+CGG | 0.460337 | 3.4:+58540364 | MS.gene04479:CDS |
| GGATTGCGTGGATGCTTTCA+CGG | 0.461082 | 3.4:-58539731 | None:intergenic |
| ATCTCGCCGCACGCAGTGCA+TGG | 0.466339 | 3.4:-58539871 | None:intergenic |
| CGGGTTGAACCAATGAGATA+AGG | 0.467937 | 3.4:-58539753 | None:intergenic |
| TTGATCCTCATTGTCCACCT+TGG | 0.471213 | 3.4:+58539460 | MS.gene04479:CDS |
| AGGGAAGAAGAGGTTGTTAT+CGG | 0.474066 | 3.4:-58539830 | None:intergenic |
| CTCGTTTGTCGTGTTATCGC+GGG | 0.476759 | 3.4:+58540393 | MS.gene04479:CDS |
| TAAGTTCATGAACGTCAAAC+GGG | 0.478847 | 3.4:+58540365 | MS.gene04479:CDS |
| TGAGGTGATGACTGGGTGGT+GGG | 0.484564 | 3.4:-58539691 | None:intergenic |
| TTTCCACGCTGTCGACCAGC+TGG | 0.486939 | 3.4:+58540301 | MS.gene04479:CDS |
| TGGTGGACTGAGGTGATGAC+TGG | 0.491734 | 3.4:-58539699 | None:intergenic |
| GCTCGTTTGTCGTGTTATCG+CGG | 0.495918 | 3.4:+58540392 | MS.gene04479:CDS |
| CACTATGTTGTGACCCGGGT+CGG | 0.498754 | 3.4:-58539962 | None:intergenic |
| TCTTTGATGGTAATAATTGA+CGG | 0.507796 | 3.4:-58539531 | None:intergenic |
| GTGCAAATCATCTTCAAATC+GGG | 0.509342 | 3.4:+58539982 | MS.gene04479:CDS |
| ACCATCGCCGCCGCGACCGC+CGG | 0.512569 | 3.4:+58539496 | MS.gene04479:CDS |
| ATCGGCGGAGATATCTGATT+CGG | 0.513214 | 3.4:-58539812 | None:intergenic |
| ATACAGCGTGGTTTGCGGAT+TGG | 0.514347 | 3.4:-58539924 | None:intergenic |
| TGGGTCTTGGAAACTCGGGT+CGG | 0.518275 | 3.4:-58539773 | None:intergenic |
| AAGACTTGATGAGGAGGAGT+TGG | 0.519786 | 3.4:+58540506 | MS.gene04479:CDS |
| TCGGATTGCTTCTTCCGTGG+TGG | 0.523041 | 3.4:-58539793 | None:intergenic |
| GGGTTGAACCAATGAGATAA+GGG | 0.524136 | 3.4:-58539752 | None:intergenic |
| TTAGGGTGAGAAGGTGAAGA+GGG | 0.530433 | 3.4:-58539580 | None:intergenic |
| TTATGTGAGTTGGGACATAA+CGG | 0.530916 | 3.4:+58540198 | MS.gene04479:CDS |
| GACGAACGTTGCATCGCCGA+CGG | 0.537463 | 3.4:+58540141 | MS.gene04479:CDS |
| GATTCGGATTGCTTCTTCCG+TGG | 0.537688 | 3.4:-58539796 | None:intergenic |
| ATCCGCAAACCACGCTGTAT+CGG | 0.538075 | 3.4:+58539927 | MS.gene04479:CDS |
| TCTCGCCGCACGCAGTGCAT+GGG | 0.550082 | 3.4:-58539870 | None:intergenic |
| GGAAGATGTCGTTACGGAGA+GGG | 0.551121 | 3.4:-58539849 | None:intergenic |
| GGAGCTTATCGGATCCGACC+CGG | 0.553645 | 3.4:+58539948 | MS.gene04479:CDS |
| TTTGTCGTGTTATCGCGGGT+CGG | 0.555072 | 3.4:+58540397 | MS.gene04479:CDS |
| TTTGATTCGGTGATGGCGCG+GGG | 0.558734 | 3.4:+58540465 | MS.gene04479:CDS |
| ACGAACGTTGCATCGCCGAC+GGG | 0.558988 | 3.4:+58540142 | MS.gene04479:CDS |
| TGCATGGGAAGATGTCGTTA+CGG | 0.561690 | 3.4:-58539855 | None:intergenic |
| GTGATGGCGCGGGGCGAGAG+CGG | 0.565593 | 3.4:+58540474 | MS.gene04479:CDS |
| ATTTGCACTATGTTGTGACC+CGG | 0.567600 | 3.4:-58539967 | None:intergenic |
| CACCGAATCAAAACCTCCAT+CGG | 0.572913 | 3.4:-58540454 | None:intergenic |
| ATTCGAAGAATATCGTGAAA+CGG | 0.573251 | 3.4:+58540080 | MS.gene04479:CDS |
| CACGCTGTCGACCAGCTGGA+GGG | 0.576873 | 3.4:+58540305 | MS.gene04479:CDS |
| TGACACGTGTGCCCTCCAGC+TGG | 0.577029 | 3.4:-58540316 | None:intergenic |
| CGGCGATGCAACGTTCGTCA+CGG | 0.579536 | 3.4:-58540137 | None:intergenic |
| TTTAGGGTGAGAAGGTGAAG+AGG | 0.580588 | 3.4:-58539581 | None:intergenic |
| GGGAAGATGTCGTTACGGAG+AGG | 0.581531 | 3.4:-58539850 | None:intergenic |
| ATCTTCCCATGCACTGCGTG+CGG | 0.588283 | 3.4:+58539865 | MS.gene04479:CDS |
| AAGCAAGGAAGAACAGCCCT+AGG | 0.591167 | 3.4:-58540540 | None:intergenic |
| TGGTGAACATGAAGCATCCA+AGG | 0.593598 | 3.4:-58539477 | None:intergenic |
| CAATGAGATAAGGGATTGCG+TGG | 0.593615 | 3.4:-58539743 | None:intergenic |
| TGGGTCAGATTTGGACGATG+AGG | 0.600823 | 3.4:+58540422 | MS.gene04479:CDS |
| GATTCGGTGTATGTTTGGGA+AGG | 0.604252 | 3.4:-58540022 | None:intergenic |
| AGCATCCAAGGTGGACAATG+AGG | 0.604755 | 3.4:-58539465 | None:intergenic |
| GTGGTGGGTCTTGGAAACTC+GGG | 0.606862 | 3.4:-58539777 | None:intergenic |
| CTATACACAATCACAAAGCA+AGG | 0.609481 | 3.4:-58540555 | None:intergenic |
| CGTTTACACAAGACTTGATG+AGG | 0.610240 | 3.4:+58540497 | MS.gene04479:CDS |
| AATTCCTGATGACATCGAGC+GGG | 0.613181 | 3.4:+58540338 | MS.gene04479:CDS |
| GAGCTTATCGGATCCGACCC+GGG | 0.613363 | 3.4:+58539949 | MS.gene04479:CDS |
| GATATTCTTCGAATTTCGAG+AGG | 0.614943 | 3.4:-58540071 | None:intergenic |
| GAGGTTGATAAAACCGATGG+AGG | 0.615798 | 3.4:+58540441 | MS.gene04479:CDS |
| GGACTGAGGTGATGACTGGG+TGG | 0.616068 | 3.4:-58539695 | None:intergenic |
| CGTTACGGAGAGGGAAGAAG+AGG | 0.619125 | 3.4:-58539840 | None:intergenic |
| ATGTGAGTTGGGACATAACG+GGG | 0.619416 | 3.4:+58540200 | MS.gene04479:CDS |
| AAATCATCTTCAAATCGGGT+TGG | 0.628705 | 3.4:+58539986 | MS.gene04479:CDS |
| CCACGCTGTCGACCAGCTGG+AGG | 0.629960 | 3.4:+58540304 | MS.gene04479:CDS |
| GGTGGACTGAGGTGATGACT+GGG | 0.635403 | 3.4:-58539698 | None:intergenic |
| GATGAGGTTGATAAAACCGA+TGG | 0.635684 | 3.4:+58540438 | MS.gene04479:CDS |
| CGAGTTTCCAAGACCCACCA+CGG | 0.640363 | 3.4:+58539779 | MS.gene04479:CDS |
| CAATTCCTGATGACATCGAG+CGG | 0.650943 | 3.4:+58540337 | MS.gene04479:CDS |
| ACGCATGAGTTCATTCCCGT+CGG | 0.655062 | 3.4:-58540157 | None:intergenic |
| CCTCCAGCTGGTCGACAGCG+TGG | 0.656388 | 3.4:-58540304 | None:intergenic |
| GTGAAGATTAAAGCGGCGCG+TGG | 0.661117 | 3.4:+58540102 | MS.gene04479:CDS |
| GAAGAAGAGGTTGTTATCGG+CGG | 0.680562 | 3.4:-58539827 | None:intergenic |
| TGAAACGGTGAAGATTAAAG+CGG | 0.683941 | 3.4:+58540095 | MS.gene04479:CDS |
| TTGCGTGGATGCTTTCACGG+TGG | 0.689558 | 3.4:-58539728 | None:intergenic |
| TTTCACGGTGGTTGTAATGG+TGG | 0.692003 | 3.4:-58539716 | None:intergenic |
| TTACACAAGACTTGATGAGG+AGG | 0.692720 | 3.4:+58540500 | MS.gene04479:CDS |
| TTTGCACTATGTTGTGACCC+GGG | 0.694888 | 3.4:-58539966 | None:intergenic |
| CGATGCAACGTTCGTCACGG+CGG | 0.705635 | 3.4:-58540134 | None:intergenic |
| TGAACATGAAGCATCCAAGG+TGG | 0.709914 | 3.4:-58539474 | None:intergenic |
| CGATAAGCTCCGATACAGCG+TGG | 0.733944 | 3.4:-58539936 | None:intergenic |
| GTGGTTGTAATGGTGGACTG+AGG | 0.746411 | 3.4:-58539709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTGGAATTATTAAATC+AGG | + | chr3.4:58540255-58540274 | MS.gene04479:CDS | 20.0% |
| !!! | TTTTATGGGTTTTGAATTTA+GGG | - | chr3.4:58539600-58539619 | None:intergenic | 20.0% |
| ! | ATAAAACTCTTTCTTCTTCT+TGG | + | chr3.4:58539614-58539633 | MS.gene04479:CDS | 25.0% |
| !! | AAGAAGAAGAAAGAGTTTTA+TGG | - | chr3.4:58539615-58539634 | None:intergenic | 25.0% |
| !! | CAGCAATTTTGTAATATTTG+TGG | + | chr3.4:58540240-58540259 | MS.gene04479:CDS | 25.0% |
| !! | TCTTTGATGGTAATAATTGA+CGG | - | chr3.4:58539534-58539553 | None:intergenic | 25.0% |
| !!! | AGAAGAAGAAAGAGTTTTAT+GGG | - | chr3.4:58539614-58539633 | None:intergenic | 25.0% |
| !!! | GTTTTATGGGTTTTGAATTT+AGG | - | chr3.4:58539601-58539620 | None:intergenic | 25.0% |
| AGTGCAAATCATCTTCAAAT+CGG | + | chr3.4:58539981-58540000 | MS.gene04479:CDS | 30.0% | |
| ATTCGAAGAATATCGTGAAA+CGG | + | chr3.4:58540080-58540099 | MS.gene04479:CDS | 30.0% | |
| GTGGAAATTCCATCTAATTT+CGG | - | chr3.4:58540288-58540307 | None:intergenic | 30.0% | |
| TGTTATGGATCTTCAAGATT+CGG | - | chr3.4:58540041-58540060 | None:intergenic | 30.0% | |
| TTAAGTTCATGAACGTCAAA+CGG | + | chr3.4:58540364-58540383 | MS.gene04479:CDS | 30.0% | |
| ! | GAGATTTTTCGTTTCTTTGA+TGG | - | chr3.4:58539547-58539566 | None:intergenic | 30.0% |
| !!! | AGTTGGTTGTTTTTAATCCT+AGG | + | chr3.4:58540523-58540542 | MS.gene04479:CDS | 30.0% |
| !!! | GTTGGTTGTTTTTAATCCTA+GGG | + | chr3.4:58540524-58540543 | MS.gene04479:CDS | 30.0% |
| AAATCATCTTCAAATCGGGT+TGG | + | chr3.4:58539986-58540005 | MS.gene04479:CDS | 35.0% | |
| ATGTCCCAACTCACATAAAA+AGG | - | chr3.4:58540196-58540215 | None:intergenic | 35.0% | |
| CTATACACAATCACAAAGCA+AGG | - | chr3.4:58540558-58540577 | None:intergenic | 35.0% | |
| GATATTCTTCGAATTTCGAG+AGG | - | chr3.4:58540074-58540093 | None:intergenic | 35.0% | |
| GTGCAAATCATCTTCAAATC+GGG | + | chr3.4:58539982-58540001 | MS.gene04479:CDS | 35.0% | |
| TAAGTTCATGAACGTCAAAC+GGG | + | chr3.4:58540365-58540384 | MS.gene04479:CDS | 35.0% | |
| TGAAACGGTGAAGATTAAAG+CGG | + | chr3.4:58540095-58540114 | MS.gene04479:CDS | 35.0% | |
| ! | GGTTTTTCACCGAAATTAGA+TGG | + | chr3.4:58540276-58540295 | MS.gene04479:CDS | 35.0% |
| ! | TCCACCTTTTTATGTGAGTT+GGG | + | chr3.4:58540189-58540208 | MS.gene04479:CDS | 35.0% |
| ! | TTATGTGAGTTGGGACATAA+CGG | + | chr3.4:58540198-58540217 | MS.gene04479:CDS | 35.0% |
| !! | GTTTTGAATTTAGGGTGAGA+AGG | - | chr3.4:58539592-58539611 | None:intergenic | 35.0% |
| !! | TCAAGATTCGGTGTATGTTT+GGG | - | chr3.4:58540029-58540048 | None:intergenic | 35.0% |
| !! | TTCAAGATTCGGTGTATGTT+TGG | - | chr3.4:58540030-58540049 | None:intergenic | 35.0% |
| !!! | TTGACGGTTATCTTGTTTTC+CGG | - | chr3.4:58539518-58539537 | None:intergenic | 35.0% |
| AGGGAAGAAGAGGTTGTTAT+CGG | - | chr3.4:58539833-58539852 | None:intergenic | 40.0% | |
| ATTTGCACTATGTTGTGACC+CGG | - | chr3.4:58539970-58539989 | None:intergenic | 40.0% | |
| CGTTTACACAAGACTTGATG+AGG | + | chr3.4:58540497-58540516 | MS.gene04479:CDS | 40.0% | |
| GGGTTGAACCAATGAGATAA+GGG | - | chr3.4:58539755-58539774 | None:intergenic | 40.0% | |
| TCCCAACTCACATAAAAAGG+TGG | - | chr3.4:58540193-58540212 | None:intergenic | 40.0% | |
| TTACACAAGACTTGATGAGG+AGG | + | chr3.4:58540500-58540519 | MS.gene04479:CDS | 40.0% | |
| ! | CGAATTTCGAGAGGATTTTC+TGG | - | chr3.4:58540065-58540084 | None:intergenic | 40.0% |
| ! | CTCCACCTTTTTATGTGAGT+TGG | + | chr3.4:58540188-58540207 | MS.gene04479:CDS | 40.0% |
| ! | TATGTGAGTTGGGACATAAC+GGG | + | chr3.4:58540199-58540218 | MS.gene04479:CDS | 40.0% |
| ! | TGCACGAATTTTTGCAGAAG+AGG | - | chr3.4:58539654-58539673 | None:intergenic | 40.0% |
| !! | GATGAGGTTGATAAAACCGA+TGG | + | chr3.4:58540438-58540457 | MS.gene04479:CDS | 40.0% |
| !! | TGGTGATTTTCGAGAAGGTT+CGG | - | chr3.4:58539907-58539926 | None:intergenic | 40.0% |
| !! | TTTGGGAAGGTGTTTGTTTC+AGG | - | chr3.4:58540012-58540031 | None:intergenic | 40.0% |
| !!! | AACCGATGGAGGTTTTGATT+CGG | + | chr3.4:58540452-58540471 | MS.gene04479:CDS | 40.0% |
| !!! | AGAGGATTTTCTGGCTGTTA+TGG | - | chr3.4:58540056-58540075 | None:intergenic | 40.0% |
| AAGACTTGATGAGGAGGAGT+TGG | + | chr3.4:58540506-58540525 | MS.gene04479:CDS | 45.0% | |
| AATTCCTGATGACATCGAGC+GGG | + | chr3.4:58540338-58540357 | MS.gene04479:CDS | 45.0% | |
| ATCGGCGGAGATATCTGATT+CGG | - | chr3.4:58539815-58539834 | None:intergenic | 45.0% | |
| CAATGAGATAAGGGATTGCG+TGG | - | chr3.4:58539746-58539765 | None:intergenic | 45.0% | |
| CAATTCCTGATGACATCGAG+CGG | + | chr3.4:58540337-58540356 | MS.gene04479:CDS | 45.0% | |
| CACCGAATCAAAACCTCCAT+CGG | - | chr3.4:58540457-58540476 | None:intergenic | 45.0% | |
| CACGCAATCCCTTATCTCAT+TGG | + | chr3.4:58539744-58539763 | MS.gene04479:CDS | 45.0% | |
| GAAGAAGAGGTTGTTATCGG+CGG | - | chr3.4:58539830-58539849 | None:intergenic | 45.0% | |
| GGTGAAGAGGGTTGTGATAA+AGG | - | chr3.4:58539571-58539590 | None:intergenic | 45.0% | |
| TGCATGGGAAGATGTCGTTA+CGG | - | chr3.4:58539858-58539877 | None:intergenic | 45.0% | |
| TGCTTTCACGGTGGTTGTAA+TGG | - | chr3.4:58539722-58539741 | None:intergenic | 45.0% | |
| TTAGGGTGAGAAGGTGAAGA+GGG | - | chr3.4:58539583-58539602 | None:intergenic | 45.0% | |
| TTGATCCTCATTGTCCACCT+TGG | + | chr3.4:58539460-58539479 | MS.gene04479:CDS | 45.0% | |
| TTTCACGGTGGTTGTAATGG+TGG | - | chr3.4:58539719-58539738 | None:intergenic | 45.0% | |
| TTTGCACTATGTTGTGACCC+GGG | - | chr3.4:58539969-58539988 | None:intergenic | 45.0% | |
| ! | ATGTGAGTTGGGACATAACG+GGG | + | chr3.4:58540200-58540219 | MS.gene04479:CDS | 45.0% |
| ! | CGGGTTGAACCAATGAGATA+AGG | - | chr3.4:58539756-58539775 | None:intergenic | 45.0% |
| ! | TGAACATGAAGCATCCAAGG+TGG | - | chr3.4:58539477-58539496 | None:intergenic | 45.0% |
| ! | TGGTGAACATGAAGCATCCA+AGG | - | chr3.4:58539480-58539499 | None:intergenic | 45.0% |
| ! | TTTAGGGTGAGAAGGTGAAG+AGG | - | chr3.4:58539584-58539603 | None:intergenic | 45.0% |
| ! | TTTCGAGAAGGTTCGGTTTC+TGG | - | chr3.4:58539900-58539919 | None:intergenic | 45.0% |
| !! | GAGGTTGATAAAACCGATGG+AGG | + | chr3.4:58540441-58540460 | MS.gene04479:CDS | 45.0% |
| !! | GATTCGGTGTATGTTTGGGA+AGG | - | chr3.4:58540025-58540044 | None:intergenic | 45.0% |
| !!! | ACGGTTATCTTGTTTTCCGG+CGG | - | chr3.4:58539515-58539534 | None:intergenic | 45.0% |
| !!! | CGGATTGGTGATTTTCGAGA+AGG | - | chr3.4:58539912-58539931 | None:intergenic | 45.0% |
| !!! | TGGAGGTTTTGATTCGGTGA+TGG | + | chr3.4:58540458-58540477 | MS.gene04479:CDS | 45.0% |
| AAGCAAGGAAGAACAGCCCT+AGG | - | chr3.4:58540543-58540562 | None:intergenic | 50.0% | |
| ACGCATGAGTTCATTCCCGT+CGG | - | chr3.4:58540160-58540179 | None:intergenic | 50.0% | |
| AGCATCCAAGGTGGACAATG+AGG | - | chr3.4:58539468-58539487 | None:intergenic | 50.0% | |
| ATCCGCAAACCACGCTGTAT+CGG | + | chr3.4:58539927-58539946 | MS.gene04479:CDS | 50.0% | |
| CACGCTGTATCGGAGCTTAT+CGG | + | chr3.4:58539937-58539956 | MS.gene04479:CDS | 50.0% | |
| CTCGTTTGTCGTGTTATCGC+GGG | + | chr3.4:58540393-58540412 | MS.gene04479:CDS | 50.0% | |
| GATTCGGATTGCTTCTTCCG+TGG | - | chr3.4:58539799-58539818 | None:intergenic | 50.0% | |
| GCTCGTTTGTCGTGTTATCG+CGG | + | chr3.4:58540392-58540411 | MS.gene04479:CDS | 50.0% | |
| GGAAGATGTCGTTACGGAGA+GGG | - | chr3.4:58539852-58539871 | None:intergenic | 50.0% | |
| GGATTGCGTGGATGCTTTCA+CGG | - | chr3.4:58539734-58539753 | None:intergenic | 50.0% | |
| TGGGTCAGATTTGGACGATG+AGG | + | chr3.4:58540422-58540441 | MS.gene04479:CDS | 50.0% | |
| TTTGTCGTGTTATCGCGGGT+CGG | + | chr3.4:58540397-58540416 | MS.gene04479:CDS | 50.0% | |
| ! | ATACAGCGTGGTTTGCGGAT+TGG | - | chr3.4:58539927-58539946 | None:intergenic | 50.0% |
| !! | GTGGTTGTAATGGTGGACTG+AGG | - | chr3.4:58539712-58539731 | None:intergenic | 50.0% |
| !!! | GTTTTGATTCGGTGATGGCG+CGG | + | chr3.4:58540463-58540482 | MS.gene04479:CDS | 50.0% |
| !!! | TTTTGATTCGGTGATGGCGC+GGG | + | chr3.4:58540464-58540483 | MS.gene04479:CDS | 50.0% |
| AACTCCCGCTCGATGTCATC+AGG | - | chr3.4:58540345-58540364 | None:intergenic | 55.0% | |
| ATCTTCCCATGCACTGCGTG+CGG | + | chr3.4:58539865-58539884 | MS.gene04479:CDS | 55.0% | |
| CACTATGTTGTGACCCGGGT+CGG | - | chr3.4:58539965-58539984 | None:intergenic | 55.0% | |
| CGAGTTTCCAAGACCCACCA+CGG | + | chr3.4:58539779-58539798 | MS.gene04479:CDS | 55.0% | |
| CGATAAGCTCCGATACAGCG+TGG | - | chr3.4:58539939-58539958 | None:intergenic | 55.0% | |
| CGGATTGCTTCTTCCGTGGT+GGG | - | chr3.4:58539795-58539814 | None:intergenic | 55.0% | |
| CGTTACGGAGAGGGAAGAAG+AGG | - | chr3.4:58539843-58539862 | None:intergenic | 55.0% | |
| CTCCGATACAGCGTGGTTTG+CGG | - | chr3.4:58539932-58539951 | None:intergenic | 55.0% | |
| GGGAAGATGTCGTTACGGAG+AGG | - | chr3.4:58539853-58539872 | None:intergenic | 55.0% | |
| GTGAAGATTAAAGCGGCGCG+TGG | + | chr3.4:58540102-58540121 | MS.gene04479:CDS | 55.0% | |
| TCGGATTGCTTCTTCCGTGG+TGG | - | chr3.4:58539796-58539815 | None:intergenic | 55.0% | |
| TGAGGTGATGACTGGGTGGT+GGG | - | chr3.4:58539694-58539713 | None:intergenic | 55.0% | |
| TGGGTCTTGGAAACTCGGGT+CGG | - | chr3.4:58539776-58539795 | None:intergenic | 55.0% | |
| TTGCGTGGATGCTTTCACGG+TGG | - | chr3.4:58539731-58539750 | None:intergenic | 55.0% | |
| TTGTCGTGTTATCGCGGGTC+GGG | + | chr3.4:58540398-58540417 | MS.gene04479:CDS | 55.0% | |
| !! | CGTGGTGGGTCTTGGAAACT+CGG | - | chr3.4:58539781-58539800 | None:intergenic | 55.0% |
| !! | GGTGGACTGAGGTGATGACT+GGG | - | chr3.4:58539701-58539720 | None:intergenic | 55.0% |
| !! | GTGGTGGGTCTTGGAAACTC+GGG | - | chr3.4:58539780-58539799 | None:intergenic | 55.0% |
| !! | TGGTGGACTGAGGTGATGAC+TGG | - | chr3.4:58539702-58539721 | None:intergenic | 55.0% |
| !! | TTTGATTCGGTGATGGCGCG+GGG | + | chr3.4:58540465-58540484 | MS.gene04479:CDS | 55.0% |
| !!! | ATCTTGTTTTCCGGCGGTCG+CGG | - | chr3.4:58539509-58539528 | None:intergenic | 55.0% |
| ACGAACGTTGCATCGCCGAC+GGG | + | chr3.4:58540142-58540161 | MS.gene04479:CDS | 60.0% | |
| CGATGCAACGTTCGTCACGG+CGG | - | chr3.4:58540137-58540156 | None:intergenic | 60.0% | |
| CGGCGATGCAACGTTCGTCA+CGG | - | chr3.4:58540140-58540159 | None:intergenic | 60.0% | |
| CTGAGGTGATGACTGGGTGG+TGG | - | chr3.4:58539695-58539714 | None:intergenic | 60.0% | |
| GACGAACGTTGCATCGCCGA+CGG | + | chr3.4:58540141-58540160 | MS.gene04479:CDS | 60.0% | |
| GAGCTTATCGGATCCGACCC+GGG | + | chr3.4:58539949-58539968 | MS.gene04479:CDS | 60.0% | |
| GGACTGAGGTGATGACTGGG+TGG | - | chr3.4:58539698-58539717 | None:intergenic | 60.0% | |
| GGAGCTTATCGGATCCGACC+CGG | + | chr3.4:58539948-58539967 | MS.gene04479:CDS | 60.0% | |
| GGGTCTTGGAAACTCGGGTC+GGG | - | chr3.4:58539775-58539794 | None:intergenic | 60.0% | |
| GTGTTATCGCGGGTCGGGTT+GGG | + | chr3.4:58540403-58540422 | MS.gene04479:CDS | 60.0% | |
| TTTCCACGCTGTCGACCAGC+TGG | + | chr3.4:58540301-58540320 | MS.gene04479:CDS | 60.0% | |
| !! | GCTTCTTCCGTGGTGGGTCT+TGG | - | chr3.4:58539789-58539808 | None:intergenic | 60.0% |
| !! | GGGTCGGGTTGGGTCAGATT+TGG | + | chr3.4:58540413-58540432 | MS.gene04479:CDS | 60.0% |
| !! | TGATGACTGGGTGGTGGGAG+TGG | - | chr3.4:58539689-58539708 | None:intergenic | 60.0% |
| ATCTCGCCGCACGCAGTGCA+TGG | - | chr3.4:58539874-58539893 | None:intergenic | 65.0% | |
| CACGCTGTCGACCAGCTGGA+GGG | + | chr3.4:58540305-58540324 | MS.gene04479:CDS | 65.0% | |
| CGTGTTATCGCGGGTCGGGT+TGG | + | chr3.4:58540402-58540421 | MS.gene04479:CDS | 65.0% | |
| TCTCGCCGCACGCAGTGCAT+GGG | - | chr3.4:58539873-58539892 | None:intergenic | 65.0% | |
| TGACACGTGTGCCCTCCAGC+TGG | - | chr3.4:58540319-58540338 | None:intergenic | 65.0% | |
| ! | TTGTTTTCCGGCGGTCGCGG+CGG | - | chr3.4:58539506-58539525 | None:intergenic | 65.0% |
| !! | TGACTGGGTGGTGGGAGTGG+TGG | - | chr3.4:58539686-58539705 | None:intergenic | 65.0% |
| CCACGCTGTCGACCAGCTGG+AGG | + | chr3.4:58540304-58540323 | MS.gene04479:CDS | 70.0% | |
| CCTCCAGCTGGTCGACAGCG+TGG | - | chr3.4:58540307-58540326 | None:intergenic | 70.0% | |
| ! | GTGATGGCGCGGGGCGAGAG+CGG | + | chr3.4:58540474-58540493 | MS.gene04479:CDS | 75.0% |
| ! | ACCATCGCCGCCGCGACCGC+CGG | + | chr3.4:58539496-58539515 | MS.gene04479:CDS | 80.0% |
| ! | TCCGGCGGTCGCGGCGGCGA+TGG | - | chr3.4:58539500-58539519 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 58539418 | 58540584 | 58539418 | ID=MS.gene04479 |
| chr3.4 | mRNA | 58539418 | 58540584 | 58539418 | ID=MS.gene04479.t1;Parent=MS.gene04479 |
| chr3.4 | exon | 58539418 | 58540584 | 58539418 | ID=MS.gene04479.t1.exon1;Parent=MS.gene04479.t1 |
| chr3.4 | CDS | 58539418 | 58540584 | 58539418 | ID=cds.MS.gene04479.t1;Parent=MS.gene04479.t1 |
| Gene Sequence |
| Protein sequence |
