Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044817.t1 | KEH21945.1 | 90.4 | 136 | 13 | 0 | 1 | 136 | 1 | 136 | 2.30E-63 | 251.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044817.t1 | Q69T58 | 63.6 | 154 | 51 | 2 | 6 | 159 | 8 | 156 | 2.8e-46 | 186.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044817.t1 | A0A072U7Y3 | 90.4 | 136 | 13 | 0 | 1 | 136 | 1 | 136 | 1.6e-63 | 251.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene044817.t1 | TF | HB-other |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044817.t1 | MTR_7g027265 | 90.441 | 136 | 13 | 0 | 1 | 136 | 1 | 136 | 3.18e-89 | 257 |
MS.gene044817.t1 | MTR_6g477820 | 65.294 | 170 | 47 | 1 | 1 | 158 | 1 | 170 | 6.74e-66 | 214 |
MS.gene044817.t1 | MTR_7g427700 | 64.901 | 151 | 41 | 2 | 1 | 151 | 1 | 139 | 9.00e-57 | 184 |
MS.gene044817.t1 | MTR_7g427710 | 64.901 | 151 | 41 | 2 | 1 | 151 | 1 | 139 | 9.46e-55 | 183 |
MS.gene044817.t1 | MTR_5g046040 | 58.156 | 141 | 58 | 1 | 19 | 158 | 35 | 175 | 5.86e-49 | 162 |
MS.gene044817.t1 | MTR_7g076080 | 55.396 | 139 | 62 | 0 | 17 | 155 | 91 | 229 | 7.59e-47 | 163 |
MS.gene044817.t1 | MTR_8g432540 | 55.396 | 139 | 62 | 0 | 17 | 155 | 115 | 253 | 1.63e-46 | 162 |
MS.gene044817.t1 | MTR_5g029320 | 50.714 | 140 | 68 | 1 | 19 | 157 | 91 | 230 | 1.81e-43 | 154 |
MS.gene044817.t1 | MTR_2g088470 | 52.239 | 134 | 64 | 0 | 19 | 152 | 69 | 202 | 6.62e-43 | 152 |
MS.gene044817.t1 | MTR_1g101280 | 52.518 | 139 | 66 | 0 | 17 | 155 | 56 | 194 | 1.17e-42 | 151 |
MS.gene044817.t1 | MTR_4g047800 | 47.712 | 153 | 78 | 1 | 2 | 152 | 43 | 195 | 1.17e-42 | 151 |
MS.gene044817.t1 | MTR_0198s0030 | 47.482 | 139 | 73 | 0 | 21 | 159 | 59 | 197 | 1.44e-41 | 148 |
MS.gene044817.t1 | MTR_2g101720 | 41.558 | 154 | 87 | 2 | 21 | 171 | 143 | 296 | 1.18e-30 | 117 |
MS.gene044817.t1 | MTR_7g427670 | 54.867 | 113 | 36 | 2 | 49 | 157 | 6 | 107 | 7.62e-29 | 103 |
MS.gene044817.t1 | MTR_2g030570 | 40.491 | 163 | 93 | 2 | 21 | 182 | 28 | 187 | 8.00e-28 | 109 |
MS.gene044817.t1 | MTR_2g030600 | 39.264 | 163 | 93 | 3 | 21 | 182 | 28 | 185 | 2.57e-25 | 102 |
MS.gene044817.t1 | MTR_6g027290 | 34.641 | 153 | 94 | 3 | 6 | 156 | 17 | 165 | 1.98e-22 | 89.0 |
MS.gene044817.t1 | MTR_2g030660 | 39.831 | 118 | 63 | 2 | 19 | 135 | 17 | 127 | 1.03e-20 | 89.0 |
MS.gene044817.t1 | MTR_5g005600 | 37.069 | 116 | 72 | 1 | 24 | 139 | 52 | 166 | 3.43e-17 | 79.0 |
MS.gene044817.t1 | MTR_2g030720 | 32.500 | 120 | 69 | 2 | 21 | 140 | 22 | 129 | 5.86e-13 | 63.9 |
MS.gene044817.t1 | MTR_8g013980 | 35.577 | 104 | 59 | 2 | 11 | 106 | 6 | 109 | 1.94e-11 | 62.4 |
MS.gene044817.t1 | MTR_2g101190 | 37.778 | 90 | 41 | 2 | 20 | 94 | 14 | 103 | 8.57e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044817.t1 | AT1G17920 | 64.748 | 139 | 49 | 0 | 20 | 158 | 24 | 162 | 2.31e-55 | 186 |
MS.gene044817.t1 | AT1G17920 | 64.748 | 139 | 49 | 0 | 20 | 158 | 24 | 162 | 2.31e-55 | 186 |
MS.gene044817.t1 | AT1G73360 | 64.964 | 137 | 48 | 0 | 19 | 155 | 34 | 170 | 8.65e-55 | 184 |
MS.gene044817.t1 | AT3G61150 | 54.887 | 133 | 60 | 0 | 19 | 151 | 112 | 244 | 1.09e-45 | 160 |
MS.gene044817.t1 | AT4G00730 | 54.135 | 133 | 61 | 0 | 17 | 149 | 134 | 266 | 8.02e-45 | 155 |
MS.gene044817.t1 | AT4G00730 | 54.135 | 133 | 61 | 0 | 17 | 149 | 134 | 266 | 4.56e-44 | 155 |
MS.gene044817.t1 | AT1G05230 | 49.669 | 151 | 73 | 1 | 6 | 153 | 50 | 200 | 2.76e-43 | 152 |
MS.gene044817.t1 | AT4G21750 | 53.731 | 134 | 62 | 0 | 19 | 152 | 64 | 197 | 7.20e-43 | 152 |
MS.gene044817.t1 | AT4G21750 | 53.731 | 134 | 62 | 0 | 19 | 152 | 64 | 197 | 7.20e-43 | 152 |
MS.gene044817.t1 | AT4G21750 | 53.731 | 134 | 62 | 0 | 19 | 152 | 64 | 197 | 7.20e-43 | 152 |
MS.gene044817.t1 | AT4G21750 | 53.731 | 134 | 62 | 0 | 19 | 152 | 64 | 197 | 7.20e-43 | 152 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 9.04e-43 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT1G05230 | 53.333 | 135 | 63 | 0 | 19 | 153 | 66 | 200 | 1.01e-42 | 151 |
MS.gene044817.t1 | AT4G04890 | 52.593 | 135 | 64 | 0 | 19 | 153 | 64 | 198 | 3.57e-42 | 150 |
MS.gene044817.t1 | AT4G04890 | 52.593 | 135 | 64 | 0 | 19 | 153 | 64 | 198 | 3.57e-42 | 150 |
MS.gene044817.t1 | AT5G52170 | 49.635 | 137 | 69 | 0 | 21 | 157 | 61 | 197 | 5.49e-39 | 140 |
MS.gene044817.t1 | AT5G52170 | 49.635 | 137 | 69 | 0 | 21 | 157 | 61 | 197 | 5.49e-39 | 140 |
MS.gene044817.t1 | AT5G52170 | 49.635 | 137 | 69 | 0 | 21 | 157 | 61 | 197 | 5.66e-39 | 140 |
MS.gene044817.t1 | AT5G46880 | 47.482 | 139 | 71 | 1 | 19 | 157 | 113 | 249 | 1.77e-36 | 134 |
MS.gene044817.t1 | AT5G46880 | 47.482 | 139 | 71 | 1 | 19 | 157 | 113 | 249 | 1.77e-36 | 134 |
MS.gene044817.t1 | AT5G46880 | 47.482 | 139 | 71 | 1 | 19 | 157 | 113 | 249 | 1.77e-36 | 134 |
MS.gene044817.t1 | AT3G03260 | 53.226 | 124 | 57 | 1 | 22 | 144 | 28 | 151 | 7.55e-34 | 125 |
MS.gene044817.t1 | AT3G03260 | 53.226 | 124 | 57 | 1 | 22 | 144 | 28 | 151 | 1.68e-33 | 125 |
MS.gene044817.t1 | AT5G17320 | 43.094 | 181 | 94 | 4 | 6 | 177 | 14 | 194 | 2.54e-32 | 122 |
MS.gene044817.t1 | AT2G32370 | 42.466 | 146 | 84 | 0 | 3 | 148 | 54 | 199 | 1.43e-31 | 120 |
MS.gene044817.t1 | AT1G79840 | 45.385 | 130 | 60 | 2 | 19 | 146 | 103 | 223 | 1.85e-28 | 110 |
MS.gene044817.t1 | AT1G79840 | 45.385 | 130 | 60 | 2 | 19 | 146 | 103 | 223 | 2.53e-28 | 110 |
MS.gene044817.t1 | AT1G79840 | 45.385 | 130 | 60 | 2 | 19 | 146 | 103 | 223 | 2.61e-28 | 110 |
MS.gene044817.t1 | AT4G17710 | 44.094 | 127 | 59 | 1 | 19 | 145 | 90 | 204 | 3.17e-28 | 110 |
MS.gene044817.t1 | AT1G79840 | 45.385 | 130 | 60 | 2 | 19 | 146 | 45 | 165 | 3.42e-28 | 110 |
MS.gene044817.t1 | AT1G79840 | 45.385 | 130 | 60 | 2 | 19 | 146 | 45 | 165 | 3.42e-28 | 110 |
MS.gene044817.t1 | AT1G79840 | 45.385 | 130 | 60 | 2 | 19 | 146 | 132 | 252 | 4.44e-28 | 110 |
MS.gene044817.t1 | AT1G34650 | 44.961 | 129 | 71 | 0 | 24 | 152 | 23 | 151 | 2.20e-26 | 105 |
MS.gene044817.t1 | AT4G25530 | 33.871 | 124 | 82 | 0 | 14 | 137 | 37 | 160 | 4.52e-17 | 78.6 |
MS.gene044817.t1 | AT4G32880 | 36.893 | 103 | 50 | 2 | 7 | 94 | 2 | 104 | 1.38e-12 | 65.5 |
MS.gene044817.t1 | AT1G30490 | 34.211 | 114 | 67 | 2 | 1 | 106 | 2 | 115 | 1.51e-11 | 62.8 |
MS.gene044817.t1 | AT1G52150 | 37.778 | 90 | 41 | 2 | 20 | 94 | 17 | 106 | 6.68e-11 | 60.8 |
MS.gene044817.t1 | AT1G52150 | 37.778 | 90 | 41 | 2 | 20 | 94 | 17 | 106 | 6.69e-11 | 60.8 |
MS.gene044817.t1 | AT1G52150 | 37.778 | 90 | 41 | 2 | 20 | 94 | 17 | 106 | 6.95e-11 | 60.8 |
Find 34 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTTTGGTTTCAGAATAAA+AGG | 0.220895 | 7.2:+72267452 | MS.gene044817:CDS |
CATACCTTCAACCCGTTACT+TGG | 0.318720 | 7.2:+72268997 | MS.gene044817:CDS |
CTCCTAGACAGATTGATGTT+TGG | 0.363835 | 7.2:+72267437 | MS.gene044817:CDS |
TATTGATCTGCCACTAAATC+TGG | 0.390615 | 7.2:-72268973 | None:intergenic |
AGCATTGCAGCCAGATTTAG+TGG | 0.391080 | 7.2:+72268963 | MS.gene044817:CDS |
AAATCACAATCAACATTGAT+TGG | 0.400197 | 7.2:-72268421 | None:intergenic |
CTGGTTTCGTCCCAAGTAAC+GGG | 0.406535 | 7.2:-72269008 | None:intergenic |
AACATAGGTTGCAGTTAAGC+AGG | 0.427466 | 7.2:+72267401 | MS.gene044817:CDS |
CTTCTAATACAGATTATATG+AGG | 0.451700 | 7.2:+72267215 | MS.gene044817:CDS |
CGTCCCAAGTAACGGGTTGA+AGG | 0.466739 | 7.2:-72269001 | None:intergenic |
TCTGGTTTCGTCCCAAGTAA+CGG | 0.484246 | 7.2:-72269009 | None:intergenic |
GAATAAAAGGGCTCAGATGA+AGG | 0.502319 | 7.2:+72267465 | MS.gene044817:CDS |
ATCTGAGAATATAGCTATGA+GGG | 0.523034 | 7.2:+72268357 | MS.gene044817:CDS |
ACACTCCTCGTCAGATTCAA+AGG | 0.528470 | 7.2:+72267257 | MS.gene044817:CDS |
AAGCAGACACGAGAAGAAAG+AGG | 0.531686 | 7.2:+72268295 | MS.gene044817:intron |
GATCTGAGAATATAGCTATG+AGG | 0.531988 | 7.2:+72268356 | MS.gene044817:CDS |
CACATCCTTGTGAACAACAT+AGG | 0.537997 | 7.2:+72267386 | MS.gene044817:CDS |
ATACCTTCAACCCGTTACTT+GGG | 0.567944 | 7.2:+72268998 | MS.gene044817:CDS |
AACCAAACATCAATCTGTCT+AGG | 0.586256 | 7.2:-72267439 | None:intergenic |
TCACAATCAACATTGATTGG+AGG | 0.587576 | 7.2:-72268418 | None:intergenic |
AAAATTCTATTGTGATGAGA+CGG | 0.590587 | 7.2:+72269043 | MS.gene044817:CDS |
TGTTTGGTTTCAGAATAAAA+GGG | 0.598282 | 7.2:+72267453 | MS.gene044817:CDS |
ATCAATCTGTCTAGGAGACA+AGG | 0.602937 | 7.2:-72267431 | None:intergenic |
AAATGCTCAACTCAAAGAAG+AGG | 0.603990 | 7.2:+72268468 | MS.gene044817:CDS |
TGCAACCTATGTTGTTCACA+AGG | 0.621373 | 7.2:-72267391 | None:intergenic |
CTTATGGAGCATCACAGTGA+AGG | 0.621938 | 7.2:+72267184 | None:intergenic |
ACATAGGTTGCAGTTAAGCA+GGG | 0.638853 | 7.2:+72267402 | MS.gene044817:CDS |
TCAAGCCTTTGAATCTGACG+AGG | 0.643299 | 7.2:-72267262 | None:intergenic |
AATGTTATCTGCAGCACTTG+TGG | 0.647495 | 7.2:+72268391 | MS.gene044817:CDS |
ACTTCATCTAGATGCCGCCA+CGG | 0.659844 | 7.2:-72269076 | None:intergenic |
GAATCTGACGAGGAGTGTGA+CGG | 0.662551 | 7.2:-72267252 | None:intergenic |
GTTATCTGCAGCACTTGTGG+TGG | 0.684640 | 7.2:+72268394 | MS.gene044817:CDS |
ACGGCAAGAGCACACCGTGG+CGG | 0.705845 | 7.2:+72269062 | MS.gene044817:CDS |
GAGACGGCAAGAGCACACCG+TGG | 0.814166 | 7.2:+72269059 | MS.gene044817:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATTAGTTAAAAATTG+TGG | + | chr7.2:72268699-72268718 | MS.gene044817:intron | 10.0% |
!! | AATTCAACAAAATGTATTTA+AGG | + | chr7.2:72268637-72268656 | MS.gene044817:intron | 15.0% |
!! | GATTATTACATTGAATTATA+TGG | + | chr7.2:72267630-72267649 | MS.gene044817:intron | 15.0% |
!!! | GTCTTTTTATTTTATTTTTC+AGG | + | chr7.2:72267347-72267366 | MS.gene044817:intron | 15.0% |
!!! | GTTATAAATTTTAGATGATT+TGG | + | chr7.2:72267495-72267514 | MS.gene044817:intron | 15.0% |
!! | TATATTTAACCACGATATAA+AGG | - | chr7.2:72268737-72268756 | None:intergenic | 20.0% |
!! | TATTATGTGGTAAATTGAAA+TGG | + | chr7.2:72268905-72268924 | MS.gene044817:intron | 20.0% |
!! | TTTATATCGTGGTTAAATAT+AGG | + | chr7.2:72268736-72268755 | MS.gene044817:intron | 20.0% |
!!! | AATATGTGCTCTTTTTTTTA+AGG | + | chr7.2:72268042-72268061 | MS.gene044817:intron | 20.0% |
!!! | ATTTACATGCAGAATTTTAA+TGG | + | chr7.2:72268549-72268568 | MS.gene044817:intron | 20.0% |
!!! | GATTTTATACAATTTTGTGT+CGG | + | chr7.2:72267741-72267760 | MS.gene044817:intron | 20.0% |
!!! | TGGTTTTCTTAAATTTTTAG+TGG | + | chr7.2:72267650-72267669 | MS.gene044817:intron | 20.0% |
! | AAAATTCTATTGTGATGAGA+CGG | + | chr7.2:72269043-72269062 | MS.gene044817:CDS | 25.0% |
! | AAATACAAAACATGTAAGCA+TGG | - | chr7.2:72268870-72268889 | None:intergenic | 25.0% |
! | AAATCACAATCAACATTGAT+TGG | - | chr7.2:72268424-72268443 | None:intergenic | 25.0% |
! | AATGTAATAATCATATGTGC+CGG | - | chr7.2:72267622-72267641 | None:intergenic | 25.0% |
! | AGATTGTGAACTAATTTGAT+AGG | + | chr7.2:72268671-72268690 | MS.gene044817:intron | 25.0% |
! | CAGAAAAAAAAAGTTCAGAT+GGG | - | chr7.2:72268206-72268225 | None:intergenic | 25.0% |
! | CTTCTAATACAGATTATATG+AGG | + | chr7.2:72267215-72267234 | MS.gene044817:CDS | 25.0% |
! | GATTTATGAACTCTATTATG+TGG | + | chr7.2:72268892-72268911 | MS.gene044817:intron | 25.0% |
!! | ACACAAATATTTTGCATAAG+TGG | - | chr7.2:72268517-72268536 | None:intergenic | 25.0% |
!! | ATCACAATAGAATTTTCGTT+TGG | - | chr7.2:72269039-72269058 | None:intergenic | 25.0% |
!! | ATGTTTGGTTTCAGAATAAA+AGG | + | chr7.2:72267452-72267471 | MS.gene044817:CDS | 25.0% |
!! | CACAAATATTTTGCATAAGT+GGG | - | chr7.2:72268516-72268535 | None:intergenic | 25.0% |
!! | TATTTTACAACGATTCTTTG+TGG | + | chr7.2:72268258-72268277 | MS.gene044817:intron | 25.0% |
!! | TGCTTACATGTTTTGTATTT+TGG | + | chr7.2:72268870-72268889 | MS.gene044817:intron | 25.0% |
!! | TGTTTGGTTTCAGAATAAAA+GGG | + | chr7.2:72267453-72267472 | MS.gene044817:CDS | 25.0% |
!! | TTTTATAATGTGATCGATTG+TGG | + | chr7.2:72268825-72268844 | MS.gene044817:intron | 25.0% |
!!! | TCTTAAATTTTTAGTGGTGT+CGG | + | chr7.2:72267656-72267675 | MS.gene044817:intron | 25.0% |
AGGTTGACTAAAAATTAGAG+TGG | - | chr7.2:72268108-72268127 | None:intergenic | 30.0% | |
ATCTGAGAATATAGCTATGA+GGG | + | chr7.2:72268357-72268376 | MS.gene044817:CDS | 30.0% | |
CAATGTAAACCTTTATATCG+TGG | + | chr7.2:72268725-72268744 | MS.gene044817:intron | 30.0% | |
CATATAACAATCTCATGTAG+TGG | - | chr7.2:72268235-72268254 | None:intergenic | 30.0% | |
CCAGAAAAAAAAAGTTCAGA+TGG | - | chr7.2:72268207-72268226 | None:intergenic | 30.0% | |
TATGTGGTAAATTGAAATGG+TGG | + | chr7.2:72268908-72268927 | MS.gene044817:intron | 30.0% | |
! | ATTTTGCATAAGTGGGTATT+TGG | - | chr7.2:72268509-72268528 | None:intergenic | 30.0% |
! | GCTGCAGATAACATTTTTAA+GGG | - | chr7.2:72268386-72268405 | None:intergenic | 30.0% |
! | TCAACAGTTATAGTTTTCCA+CGG | + | chr7.2:72267871-72267890 | MS.gene044817:intron | 30.0% |
! | TGCTGCAGATAACATTTTTA+AGG | - | chr7.2:72268387-72268406 | None:intergenic | 30.0% |
! | TTGTGTGTTTCTATGAAACA+AGG | + | chr7.2:72267545-72267564 | MS.gene044817:intron | 30.0% |
!!! | CCATCTGAACTTTTTTTTTC+TGG | + | chr7.2:72268204-72268223 | MS.gene044817:intron | 30.0% |
!!! | GAATTTTCGTTTGGTTTTTC+TGG | - | chr7.2:72269030-72269049 | None:intergenic | 30.0% |
!!! | GTAAGCATGGTTTTAAATTG+CGG | - | chr7.2:72268857-72268876 | None:intergenic | 30.0% |
AAATGCTCAACTCAAAGAAG+AGG | + | chr7.2:72268468-72268487 | MS.gene044817:CDS | 35.0% | |
AACCAAACATCAATCTGTCT+AGG | - | chr7.2:72267442-72267461 | None:intergenic | 35.0% | |
ATAACAATCTCATGTAGTGG+CGG | - | chr7.2:72268232-72268251 | None:intergenic | 35.0% | |
CTCAACTGAAAATTCTCTCT+CGG | + | chr7.2:72267987-72268006 | MS.gene044817:intron | 35.0% | |
GATCTGAGAATATAGCTATG+AGG | + | chr7.2:72268356-72268375 | MS.gene044817:CDS | 35.0% | |
TACGTACGAAGTTGAAATGA+CGG | - | chr7.2:72268131-72268150 | None:intergenic | 35.0% | |
TATTGATCTGCCACTAAATC+TGG | - | chr7.2:72268976-72268995 | None:intergenic | 35.0% | |
TCGTTAATTCCTATGAAGCA+CGG | - | chr7.2:72267710-72267729 | None:intergenic | 35.0% | |
TGATCAAAATTCTCGCAAAG+TGG | + | chr7.2:72267778-72267797 | MS.gene044817:intron | 35.0% | |
TGTAGAACTTCGAATTTGCA+CGG | + | chr7.2:72267938-72267957 | MS.gene044817:intron | 35.0% | |
TTCAGTTGAGAGACAATATG+CGG | - | chr7.2:72267977-72267996 | None:intergenic | 35.0% | |
TTGGATCCTATAACTCAAGT+GGG | + | chr7.2:72267514-72267533 | MS.gene044817:intron | 35.0% | |
TTTGGATCCTATAACTCAAG+TGG | + | chr7.2:72267513-72267532 | MS.gene044817:intron | 35.0% | |
! | ACAACGATTCTTTGTGGTTT+TGG | + | chr7.2:72268264-72268283 | MS.gene044817:intron | 35.0% |
! | TCACAATCAACATTGATTGG+AGG | - | chr7.2:72268421-72268440 | None:intergenic | 35.0% |
AACATAGGTTGCAGTTAAGC+AGG | + | chr7.2:72267401-72267420 | MS.gene044817:CDS | 40.0% | |
AATGTTATCTGCAGCACTTG+TGG | + | chr7.2:72268391-72268410 | MS.gene044817:CDS | 40.0% | |
ACAAGGACACTTCTCGAATT+AGG | + | chr7.2:72267562-72267581 | MS.gene044817:intron | 40.0% | |
ACATAGGTTGCAGTTAAGCA+GGG | + | chr7.2:72267402-72267421 | MS.gene044817:CDS | 40.0% | |
ATACCTTCAACCCGTTACTT+GGG | + | chr7.2:72268998-72269017 | MS.gene044817:CDS | 40.0% | |
ATCAATCTGTCTAGGAGACA+AGG | - | chr7.2:72267434-72267453 | None:intergenic | 40.0% | |
CACATCCTTGTGAACAACAT+AGG | + | chr7.2:72267386-72267405 | MS.gene044817:CDS | 40.0% | |
CGTTAATTCCTATGAAGCAC+GGG | - | chr7.2:72267709-72267728 | None:intergenic | 40.0% | |
CTCCTAGACAGATTGATGTT+TGG | + | chr7.2:72267437-72267456 | MS.gene044817:CDS | 40.0% | |
GAATAAAAGGGCTCAGATGA+AGG | + | chr7.2:72267465-72267484 | MS.gene044817:CDS | 40.0% | |
GTAATAATCATATGTGCCGG+TGG | - | chr7.2:72267619-72267638 | None:intergenic | 40.0% | |
GTACAGACACAGACATTACA+CGG | - | chr7.2:72267687-72267706 | None:intergenic | 40.0% | |
TCAGTTGAGAGACAATATGC+GGG | - | chr7.2:72267976-72267995 | None:intergenic | 40.0% | |
TCTACACCCACTTGAGTTAT+AGG | - | chr7.2:72267523-72267542 | None:intergenic | 40.0% | |
TGCAACCTATGTTGTTCACA+AGG | - | chr7.2:72267394-72267413 | None:intergenic | 40.0% | |
TTGTAGTTGCATTGTTGCTG+CGG | + | chr7.2:72268783-72268802 | MS.gene044817:intron | 40.0% | |
! | CGTGATTTTTGTGATGCTAG+CGG | + | chr7.2:72267910-72267929 | MS.gene044817:intron | 40.0% |
!!! | GTATGTCACTTTTGAAACCG+TGG | - | chr7.2:72267891-72267910 | None:intergenic | 40.0% |
AAGCAGACACGAGAAGAAAG+AGG | + | chr7.2:72268295-72268314 | MS.gene044817:intron | 45.0% | |
ACACTCCTCGTCAGATTCAA+AGG | + | chr7.2:72267257-72267276 | MS.gene044817:CDS | 45.0% | |
AGCATTGCAGCCAGATTTAG+TGG | + | chr7.2:72268963-72268982 | MS.gene044817:CDS | 45.0% | |
ATTCTCGCAAAGTGGTGTAG+TGG | + | chr7.2:72267786-72267805 | MS.gene044817:intron | 45.0% | |
CATACCTTCAACCCGTTACT+TGG | + | chr7.2:72268997-72269016 | MS.gene044817:CDS | 45.0% | |
GTACGAAGTTGAAATGACGG+AGG | - | chr7.2:72268128-72268147 | None:intergenic | 45.0% | |
TCAAGCCTTTGAATCTGACG+AGG | - | chr7.2:72267265-72267284 | None:intergenic | 45.0% | |
! | TCTGGTTTCGTCCCAAGTAA+CGG | - | chr7.2:72269012-72269031 | None:intergenic | 45.0% |
!! | ATAAAACAAAAATTAATAAA+GGG | - | chr7.2:72267324-72267343 | None:intergenic | 5.0% |
!! | TATAAAACAAAAATTAATAA+AGG | - | chr7.2:72267325-72267344 | None:intergenic | 5.0% |
!!! | ATTGAAATATTTAAATTTTT+TGG | - | chr7.2:72267817-72267836 | None:intergenic | 5.0% |
!!! | TATATTATAATTAATTTTAG+TGG | + | chr7.2:72268180-72268199 | MS.gene044817:intron | 5.0% |
!!! | TTATTAATTTTTGTTTTATA+TGG | + | chr7.2:72267325-72267344 | MS.gene044817:intron | 5.0% |
!!! | TTGAAATATTTAAATTTTTT+GGG | - | chr7.2:72267816-72267835 | None:intergenic | 5.0% |
CTGGTTTCGTCCCAAGTAAC+GGG | - | chr7.2:72269011-72269030 | None:intergenic | 50.0% | |
GTTATCTGCAGCACTTGTGG+TGG | + | chr7.2:72268394-72268413 | MS.gene044817:CDS | 50.0% | |
TGTCTGTACCCGTGCTTCAT+AGG | + | chr7.2:72267698-72267717 | MS.gene044817:intron | 50.0% | |
! | AATCATATGTGCCGGTGGTG+TGG | - | chr7.2:72267614-72267633 | None:intergenic | 50.0% |
! | GAATCTGACGAGGAGTGTGA+CGG | - | chr7.2:72267255-72267274 | None:intergenic | 50.0% |
CGACACTAACACCACACCAC+CGG | + | chr7.2:72267600-72267619 | MS.gene044817:intron | 55.0% | |
! | CGGTGGTGTGGTGTTAGTGT+CGG | - | chr7.2:72267602-72267621 | None:intergenic | 55.0% |
!! | CGTCCCAAGTAACGGGTTGA+AGG | - | chr7.2:72269004-72269023 | None:intergenic | 55.0% |
! | ACGGCAAGAGCACACCGTGG+CGG | + | chr7.2:72269062-72269081 | MS.gene044817:CDS | 65.0% |
! | GAGACGGCAAGAGCACACCG+TGG | + | chr7.2:72269059-72269078 | MS.gene044817:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 72267187 | 72269091 | 72267187 | ID=MS.gene044817 |
chr7.2 | mRNA | 72267187 | 72269091 | 72267187 | ID=MS.gene044817.t1;Parent=MS.gene044817 |
chr7.2 | exon | 72267187 | 72267287 | 72267187 | ID=MS.gene044817.t1.exon1;Parent=MS.gene044817.t1 |
chr7.2 | CDS | 72267187 | 72267287 | 72267187 | ID=cds.MS.gene044817.t1;Parent=MS.gene044817.t1 |
chr7.2 | exon | 72267369 | 72267486 | 72267369 | ID=MS.gene044817.t1.exon2;Parent=MS.gene044817.t1 |
chr7.2 | CDS | 72267369 | 72267486 | 72267369 | ID=cds.MS.gene044817.t1;Parent=MS.gene044817.t1 |
chr7.2 | exon | 72268301 | 72268489 | 72268301 | ID=MS.gene044817.t1.exon3;Parent=MS.gene044817.t1 |
chr7.2 | CDS | 72268301 | 72268489 | 72268301 | ID=cds.MS.gene044817.t1;Parent=MS.gene044817.t1 |
chr7.2 | exon | 72268948 | 72269091 | 72268948 | ID=MS.gene044817.t1.exon4;Parent=MS.gene044817.t1 |
chr7.2 | CDS | 72268948 | 72269091 | 72268948 | ID=cds.MS.gene044817.t1;Parent=MS.gene044817.t1 |
Gene Sequence |
Protein sequence |