AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044841

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044841.t1 MTR_7g026400 85.446 426 48 3 1 413 69 493 0.0 681
MS.gene044841.t1 MTR_0450s0040 48.173 301 114 6 1 300 86 345 1.66e-73 234
MS.gene044841.t1 MTR_4g121020 35.185 162 91 2 1 148 9 170 1.46e-25 109
MS.gene044841.t1 MTR_4g121020 35.185 162 91 2 1 148 113 274 3.27e-25 108
MS.gene044841.t1 MTR_4g121020 35.185 162 91 2 1 148 113 274 3.36e-25 108
MS.gene044841.t1 MTR_2g034960 38.750 160 86 4 1 148 111 270 5.81e-25 107
MS.gene044841.t1 MTR_6g088950 61.111 90 33 2 1 88 86 175 2.30e-24 100
MS.gene044841.t1 MTR_4g021760 29.583 240 135 6 1 229 92 308 4.88e-24 102
MS.gene044841.t1 MTR_1g032570 31.771 192 106 5 1 168 24 214 1.60e-23 103
MS.gene044841.t1 MTR_1g032570 31.771 192 106 5 1 168 93 283 5.13e-23 102
MS.gene044841.t1 MTR_1g013170 34.118 170 82 3 2 148 88 250 6.27e-23 101
MS.gene044841.t1 MTR_8g079940 33.690 187 106 5 1 169 107 293 1.10e-22 100
MS.gene044841.t1 MTR_3g106220 37.654 162 77 4 9 148 98 257 3.39e-22 99.8
MS.gene044841.t1 MTR_4g021855 32.597 181 98 3 1 177 91 251 9.77e-22 95.1
MS.gene044841.t1 MTR_7g117705 33.158 190 91 5 2 167 89 266 1.04e-21 97.4
MS.gene044841.t1 MTR_3g086100 33.155 187 99 5 1 164 24 207 1.31e-21 97.4
MS.gene044841.t1 MTR_4g021845 35.915 142 72 2 1 138 91 217 1.49e-21 92.8
MS.gene044841.t1 MTR_4g021790 34.810 158 84 2 1 154 91 233 2.99e-21 93.2
MS.gene044841.t1 MTR_3g086100 33.155 187 99 5 1 164 95 278 3.38e-21 96.3
MS.gene044841.t1 MTR_2g450070 32.584 178 89 4 8 156 107 282 5.71e-21 95.9
MS.gene044841.t1 MTR_2g450070 32.584 178 89 4 8 156 107 282 7.99e-21 95.5
MS.gene044841.t1 MTR_1g013180 34.463 177 86 3 2 155 239 408 1.08e-19 92.0
MS.gene044841.t1 MTR_4g131600 32.941 170 90 3 10 155 111 280 2.29e-19 90.9
MS.gene044841.t1 MTR_4g131580 34.395 157 90 2 10 153 108 264 3.61e-19 90.5
MS.gene044841.t1 MTR_3g102590 33.566 143 59 2 1 143 91 197 6.31e-19 85.9
MS.gene044841.t1 MTR_6g045327 34.161 161 74 3 1 151 96 234 1.91e-18 87.0
MS.gene044841.t1 MTR_4g064730 44.828 87 41 2 66 145 101 187 3.82e-18 85.1
MS.gene044841.t1 MTR_3g102600 29.801 151 60 2 1 151 41 145 4.26e-18 82.0
MS.gene044841.t1 MTR_6g089050 60.317 63 25 0 1 63 32 94 6.85e-18 80.9
MS.gene044841.t1 MTR_7g089010 51.515 66 32 0 80 145 82 147 8.11e-18 84.0
MS.gene044841.t1 MTR_3g102600 29.801 151 60 2 1 151 90 194 1.20e-17 82.0
MS.gene044841.t1 MTR_4g131570 32.716 162 93 3 10 155 108 269 1.61e-17 85.1
MS.gene044841.t1 MTR_3g102590 31.884 138 58 2 1 138 91 192 3.56e-16 77.0
MS.gene044841.t1 MTR_0054s0010 55.556 63 28 0 1 63 21 83 3.38e-15 73.6
MS.gene044841.t1 MTR_4g078810 59.259 54 22 0 88 141 157 210 6.79e-15 76.6
MS.gene044841.t1 MTR_2g090675 59.259 54 22 0 88 141 160 213 1.82e-14 75.1
MS.gene044841.t1 MTR_4g098870 49.206 63 32 0 88 150 309 371 3.09e-14 75.1
MS.gene044841.t1 MTR_4g098870 49.206 63 32 0 88 150 329 391 3.24e-14 75.1
MS.gene044841.t1 MTR_4g098870 49.206 63 32 0 88 150 309 371 3.40e-14 74.7
MS.gene044841.t1 MTR_4g098870 49.206 63 32 0 88 150 329 391 3.54e-14 74.7
MS.gene044841.t1 MTR_4g098870 49.206 63 32 0 88 150 348 410 3.64e-14 74.7
MS.gene044841.t1 MTR_5g014040 51.667 60 29 0 88 147 310 369 4.94e-14 74.3
MS.gene044841.t1 MTR_3g102600 50.943 53 26 0 88 140 82 134 5.91e-14 69.3
MS.gene044841.t1 MTR_3g102600 27.857 140 55 2 1 140 90 183 2.09e-13 68.9
MS.gene044841.t1 MTR_8g105600 31.288 163 82 4 1 144 91 242 1.81e-12 69.7
MS.gene044841.t1 MTR_5g014040 47.692 65 29 1 88 147 270 334 4.66e-12 68.2
MS.gene044841.t1 MTR_5g014040 47.692 65 29 1 88 147 310 374 5.02e-12 68.2
MS.gene044841.t1 MTR_4g086835 42.857 63 36 0 85 147 270 332 6.93e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044841.t1 AT3G16857 35.079 191 84 4 1 157 45 229 1.16e-26 113
MS.gene044841.t1 AT3G16857 35.079 191 84 4 1 157 115 299 2.27e-26 112
MS.gene044841.t1 AT3G16857 35.079 191 84 4 1 157 115 299 2.63e-26 112
MS.gene044841.t1 AT5G07210 55.446 101 42 1 68 165 206 306 3.02e-25 108
MS.gene044841.t1 AT5G07210 55.446 101 42 1 68 165 198 298 3.52e-25 108
MS.gene044841.t1 AT4G31920 34.211 152 100 0 1 152 95 246 1.28e-22 100
MS.gene044841.t1 AT2G01760 34.706 170 89 3 1 148 25 194 1.71e-21 95.1
MS.gene044841.t1 AT2G27070 43.609 133 71 2 37 165 169 301 2.00e-21 97.1
MS.gene044841.t1 AT2G25180 35.625 160 91 2 1 148 95 254 3.01e-21 96.7
MS.gene044841.t1 AT2G01760 34.706 170 89 3 1 148 90 259 7.61e-21 94.0
MS.gene044841.t1 AT2G01760 34.706 170 89 3 1 148 118 287 1.20e-20 94.0
MS.gene044841.t1 AT5G58080 31.383 188 103 4 10 179 104 283 5.29e-20 93.2
MS.gene044841.t1 AT5G49240 33.121 157 82 3 1 138 120 272 1.55e-18 85.9
MS.gene044841.t1 AT5G59570 37.500 112 59 2 47 147 88 199 3.84e-18 85.1
MS.gene044841.t1 AT5G59570 37.500 112 59 2 47 147 88 199 3.84e-18 85.1
MS.gene044841.t1 AT3G10760 47.887 71 37 0 75 145 91 161 4.47e-18 85.5
MS.gene044841.t1 AT5G05090 47.826 69 36 0 77 145 69 137 7.19e-18 83.6
MS.gene044841.t1 AT3G46640 50.000 68 32 1 80 145 133 200 1.13e-17 84.0
MS.gene044841.t1 AT3G46640 50.000 68 32 1 80 145 133 200 1.13e-17 84.0
MS.gene044841.t1 AT1G67710 36.310 168 89 5 1 151 24 190 1.40e-17 85.1
MS.gene044841.t1 AT2G40970 51.515 66 32 0 80 145 96 161 1.44e-17 82.4
MS.gene044841.t1 AT1G67710 36.310 168 89 5 1 151 15 181 1.69e-17 84.7
MS.gene044841.t1 AT3G46640 50.000 68 32 1 80 145 133 200 1.94e-17 83.2
MS.gene044841.t1 AT1G67710 35.714 168 90 5 1 151 89 255 2.24e-17 84.7
MS.gene044841.t1 AT5G44190 60.656 61 22 1 81 141 141 199 1.46e-16 81.3
MS.gene044841.t1 AT5G44190 60.656 61 22 1 81 141 141 199 1.52e-16 80.9
MS.gene044841.t1 AT2G20570 57.407 54 23 0 88 141 152 205 3.00e-14 74.7
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.00e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.00e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.00e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.00e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.00e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.00e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.09e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.09e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.09e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.09e-14 75.1
MS.gene044841.t1 AT4G18020 43.421 76 40 1 89 164 296 368 3.09e-14 75.1
MS.gene044841.t1 AT2G20570 58.824 51 21 0 91 141 171 221 1.42e-13 72.8
MS.gene044841.t1 AT1G49190 30.952 168 91 6 1 146 112 276 4.09e-11 65.1

Find 68 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATTCTATTTCTAATATT+AGG 0.147775 7.2:+72800982 MS.gene044841:CDS
CAATTTCCTTATATACAAAA+AGG 0.214869 7.2:+72800462 MS.gene044841:CDS
GCTGAAGACTTCAAAGATAT+TGG 0.226006 7.2:+72799046 MS.gene044841:CDS
GAACTATGAACAATGGATTA+AGG 0.243060 7.2:+72800859 MS.gene044841:CDS
TATGCCAGTGTTTGCAAATA+TGG 0.272397 7.2:-72800375 None:intergenic
AGATTCTATTTCTAATATTA+GGG 0.274157 7.2:+72800983 MS.gene044841:CDS
AAATGTAGCAAGTCACTTAC+AGG 0.277878 7.2:+72800033 MS.gene044841:CDS
CAACATGATGTGTTGGAAAT+TGG 0.289454 7.2:-72800437 None:intergenic
CTGCTTGCTATTGACCAAAT+TGG 0.292299 7.2:+72799271 MS.gene044841:CDS
ACTTACTTTCCAATCCAATT+TGG 0.301438 7.2:-72799285 None:intergenic
TTAAGAAACAAAAGCTTGTT+TGG 0.309580 7.2:+72799224 MS.gene044841:CDS
TTCGGAATTCAGCTGAATAA+TGG 0.313022 7.2:+72800816 MS.gene044841:CDS
GATATTAGAAACCAAAATTA+TGG 0.315005 7.2:+72800732 MS.gene044841:CDS
AGGGCTGGCTCTTCAAGATT+TGG 0.319081 7.2:+72800482 MS.gene044841:CDS
TTGAAGTCTTCAGCACAAAA+AGG 0.324880 7.2:-72799037 None:intergenic
ATCTCGAAGACACTAGAAAA+TGG 0.329147 7.2:+72798992 MS.gene044841:CDS
TTCAAGATTTGGAACAAGTT+AGG 0.330501 7.2:+72800493 MS.gene044841:CDS
GGCTGTGCCAAAGAAAATTC+TGG 0.364480 7.2:+72799979 MS.gene044841:CDS
AACTATGAACAATGGATTAA+GGG 0.373260 7.2:+72800860 MS.gene044841:CDS
GGTTTGGTTCAAGGAGGGTT+TGG 0.385385 7.2:+72800957 MS.gene044841:CDS
CTGAAGACTTCAAAGATATT+GGG 0.389220 7.2:+72799047 MS.gene044841:CDS
GGAGCAGGAATGGTTGGAAT+TGG 0.414917 7.2:+72800837 MS.gene044841:CDS
TAGAGCTGAACAAGGATTGA+TGG 0.418771 7.2:+72800662 MS.gene044841:CDS
CTGCGAGATGTTGCAGAGAA+AGG 0.423104 7.2:+72800234 MS.gene044841:CDS
GTGTTGGAAATTGGTTGAAA+TGG 0.423793 7.2:-72800428 None:intergenic
AGATATTGGGAAATATGTTA+TGG 0.426061 7.2:+72799060 MS.gene044841:CDS
GTAAGAAATAACAATCCTTT+CGG 0.436356 7.2:+72800798 MS.gene044841:CDS
TGCTATTGACCAAATTGGAT+TGG 0.439605 7.2:+72799276 MS.gene044841:CDS
AGCTATGATCAATACAGGTT+TGG 0.444597 7.2:+72800561 MS.gene044841:CDS
CAGTTATGTCTGAAGACAAT+AGG 0.449275 7.2:+72798960 None:intergenic
TAGTGCAAATAACAATGAAA+CGG 0.469674 7.2:+72800887 MS.gene044841:CDS
ACATCAGAAGTAAATTTATG+AGG 0.469959 7.2:-72800777 None:intergenic
CTTCTTCAAGTTTCTTAACA+AGG 0.470322 7.2:+72800694 MS.gene044841:CDS
ATAACAGCTATGATCAATAC+AGG 0.478599 7.2:+72800556 MS.gene044841:CDS
AGTGCAAATAACAATGAAAC+GGG 0.482006 7.2:+72800888 MS.gene044841:CDS
GATTTGGAACAAGTTAGGCT+TGG 0.484973 7.2:+72800498 MS.gene044841:CDS
AGTGTCTTCGAGATTAAACT+TGG 0.495636 7.2:-72798983 None:intergenic
CTTGAATATCTCTCTCTCCT+TGG 0.495918 7.2:-72799198 None:intergenic
TCTAATATTAGGGGAGGGAG+TGG 0.503861 7.2:+72800993 MS.gene044841:CDS
GTTGCAGAGAAAGGAATGGT+TGG 0.508048 7.2:+72800243 MS.gene044841:CDS
TAGGCTTGGAAAATCAAAGT+TGG 0.508790 7.2:+72800512 MS.gene044841:CDS
CTCACAGAGCTCTAAGATCA+AGG 0.512314 7.2:+72800274 MS.gene044841:CDS
AGGATCAGTTAATATAATGA+AGG 0.528442 7.2:+72801031 MS.gene044841:CDS
AATAATGGAGCAGGAATGGT+TGG 0.529804 7.2:+72800831 MS.gene044841:CDS
TTCTTCAAGTTTCTTAACAA+GGG 0.536372 7.2:+72800695 MS.gene044841:CDS
GCTGAATAATGGAGCAGGAA+TGG 0.538668 7.2:+72800827 MS.gene044841:CDS
TTTCCATCTAATTTATATCG+AGG 0.553052 7.2:-72801079 None:intergenic
TCTATTTCTAATATTAGGGG+AGG 0.557220 7.2:+72800987 MS.gene044841:CDS
AATTTGGTTTGGTTCAAGGA+GGG 0.563542 7.2:+72800952 MS.gene044841:CDS
ATTCAGCTGAATAATGGAGC+AGG 0.566994 7.2:+72800822 MS.gene044841:CDS
AGTGGAAGAGAGTTTCTAGC+AGG 0.567708 7.2:+72801011 MS.gene044841:CDS
GCAGAGAAAGGAATGGTTGG+AGG 0.578705 7.2:+72800246 MS.gene044841:CDS
ACTTCCATATTTGCAAACAC+TGG 0.582579 7.2:+72800371 MS.gene044841:CDS
CTATTTCTAATATTAGGGGA+GGG 0.586359 7.2:+72800988 MS.gene044841:CDS
AAATTTGGTTTGGTTCAAGG+AGG 0.591953 7.2:+72800951 MS.gene044841:CDS
GGAATTGGAACTATGAACAA+TGG 0.591999 7.2:+72800852 MS.gene044841:CDS
AATTGGCCAACATGATGTGT+TGG 0.593925 7.2:-72800444 None:intergenic
GATTCTATTTCTAATATTAG+GGG 0.598018 7.2:+72800984 MS.gene044841:CDS
GTTATTCTCTGCAACAACAT+CGG 0.600928 7.2:-72800538 None:intergenic
TCTATATGATGAAAAGCTAG+TGG 0.601942 7.2:-72800643 None:intergenic
AGAAAGAGTAAAGAATGCCA+AGG 0.604346 7.2:+72799181 MS.gene044841:CDS
TCATCATATAGAGCTGAACA+AGG 0.608032 7.2:+72800654 MS.gene044841:CDS
ATTTCTCTTATCATAGACAT+CGG 0.611317 7.2:-72800312 None:intergenic
GTTTGCAAATATGGAAGTGT+TGG 0.612895 7.2:-72800366 None:intergenic
CAATTTCCAACACATCATGT+TGG 0.618695 7.2:+72800438 MS.gene044841:CDS
TTATTCAGCTGAATTCCGAA+AGG 0.621035 7.2:-72800813 None:intergenic
ACACTGGCATATCAAACAAG+AGG 0.654807 7.2:+72800387 MS.gene044841:CDS
AGATGTTGCAGAGAAAGGAA+TGG 0.689031 7.2:+72800239 MS.gene044841:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATGATATTATAATATTA+TGG - chr7.2:72800088-72800107 None:intergenic 10.0%
!! TGTGTATTAATATTAAAATT+TGG - chr7.2:72799854-72799873 None:intergenic 10.0%
!!! ATCTTTTAAAAATATTTGAA+AGG + chr7.2:72799309-72799328 MS.gene044841:intron 10.0%
!! AACAATTTAGTAATTTACAT+AGG + chr7.2:72799690-72799709 MS.gene044841:intron 15.0%
!! AATATTAAAATTTGGATGAT+AGG - chr7.2:72799846-72799865 None:intergenic 15.0%
!! AATTTCCTTATATACAAAAA+GGG + chr7.2:72800463-72800482 MS.gene044841:CDS 15.0%
!! TGTTATTAGTATATTTACTT+AGG - chr7.2:72799674-72799693 None:intergenic 15.0%
!!! AGATTCTATTTCTAATATTA+GGG + chr7.2:72800983-72801002 MS.gene044841:CDS 15.0%
!!! ATTTTACAGTGATATTATAA+TGG + chr7.2:72799533-72799552 MS.gene044841:intron 15.0%
!!! TAGATTCTATTTCTAATATT+AGG + chr7.2:72800982-72801001 MS.gene044841:CDS 15.0%
!! ATATCACTGTAAAATAATAG+CGG - chr7.2:72799528-72799547 None:intergenic 20.0%
!! CAATTTCCTTATATACAAAA+AGG + chr7.2:72800462-72800481 MS.gene044841:CDS 20.0%
!! GATATTAGAAACCAAAATTA+TGG + chr7.2:72800732-72800751 MS.gene044841:CDS 20.0%
!!! CTTTTTGTATATAAGGAAAT+TGG - chr7.2:72800464-72800483 None:intergenic 20.0%
!!! GATTCTATTTCTAATATTAG+GGG + chr7.2:72800984-72801003 MS.gene044841:CDS 20.0%
!!! TCTTTTGTGAATGAAAAATT+TGG + chr7.2:72800936-72800955 MS.gene044841:CDS 20.0%
! ACATCAGAAGTAAATTTATG+AGG - chr7.2:72800780-72800799 None:intergenic 25.0%
! AGATATTGGGAAATATGTTA+TGG + chr7.2:72799060-72799079 MS.gene044841:CDS 25.0%
! AGGATCAGTTAATATAATGA+AGG + chr7.2:72801031-72801050 MS.gene044841:CDS 25.0%
! AGTTAAAATCCCATATGATA+TGG - chr7.2:72799570-72799589 None:intergenic 25.0%
! ATTTCTCTTATCATAGACAT+CGG - chr7.2:72800315-72800334 None:intergenic 25.0%
! ATTTGACAACCATATCATAT+GGG + chr7.2:72799558-72799577 MS.gene044841:intron 25.0%
! GTAAGAAATAACAATCCTTT+CGG + chr7.2:72800798-72800817 MS.gene044841:CDS 25.0%
! TAGTGCAAATAACAATGAAA+CGG + chr7.2:72800887-72800906 MS.gene044841:CDS 25.0%
! TGTGAATGAAAAATTTGGTT+TGG + chr7.2:72800941-72800960 MS.gene044841:CDS 25.0%
!! TGCTTTTAACACCATAATTT+TGG - chr7.2:72800746-72800765 None:intergenic 25.0%
!! TTAAGAAACAAAAGCTTGTT+TGG + chr7.2:72799224-72799243 MS.gene044841:CDS 25.0%
!! TTATCTTTTCCCTAATTTAG+AGG + chr7.2:72799958-72799977 MS.gene044841:intron 25.0%
!! TTCTTCAAGTTTCTTAACAA+GGG + chr7.2:72800695-72800714 MS.gene044841:CDS 25.0%
!! TTTTTGCTTGAAAAATTGGA+AGG - chr7.2:72800602-72800621 None:intergenic 25.0%
!!! AACTATGAACAATGGATTAA+GGG + chr7.2:72800860-72800879 MS.gene044841:CDS 25.0%
!!! GAGTTTTTTGCTTGAAAAAT+TGG - chr7.2:72800606-72800625 None:intergenic 25.0%
ACACCACTATCATTGTTTAT+AGG + chr7.2:72799648-72799667 MS.gene044841:intron 30.0%
ACTTACTTTCCAATCCAATT+TGG - chr7.2:72799288-72799307 None:intergenic 30.0%
AGTGCAAATAACAATGAAAC+GGG + chr7.2:72800888-72800907 MS.gene044841:CDS 30.0%
ATAACAGCTATGATCAATAC+AGG + chr7.2:72800556-72800575 MS.gene044841:CDS 30.0%
CATTTGACAACCATATCATA+TGG + chr7.2:72799557-72799576 MS.gene044841:intron 30.0%
CCAACAATGAAATATACTTG+AGG + chr7.2:72799466-72799485 MS.gene044841:intron 30.0%
CCTCAAGTATATTTCATTGT+TGG - chr7.2:72799469-72799488 None:intergenic 30.0%
CTGAAGACTTCAAAGATATT+GGG + chr7.2:72799047-72799066 MS.gene044841:CDS 30.0%
GCAAAAAACTCATTCAATGA+TGG + chr7.2:72800615-72800634 MS.gene044841:CDS 30.0%
TACTTCTTCCAACCATTAAT+CGG + chr7.2:72799378-72799397 MS.gene044841:intron 30.0%
TCTATATGATGAAAAGCTAG+TGG - chr7.2:72800646-72800665 None:intergenic 30.0%
TTTCATTGTTGGATTGATAG+TGG - chr7.2:72799458-72799477 None:intergenic 30.0%
! AGAAACATTTTGTGGAGATA+AGG - chr7.2:72799253-72799272 None:intergenic 30.0%
! AGAGCCAACAACTTAATTTT+AGG - chr7.2:72799897-72799916 None:intergenic 30.0%
! AGCCAACAACTTAATTTTAG+GGG - chr7.2:72799895-72799914 None:intergenic 30.0%
! AGTTTAACTTTGTAACCTCA+AGG - chr7.2:72799598-72799617 None:intergenic 30.0%
! ATGATCTCCAGAATTTTCTT+TGG - chr7.2:72799989-72800008 None:intergenic 30.0%
! CTTCTTCAAGTTTCTTAACA+AGG + chr7.2:72800694-72800713 MS.gene044841:CDS 30.0%
! GAGCCAACAACTTAATTTTA+GGG - chr7.2:72799896-72799915 None:intergenic 30.0%
! GTTTAACTTTGTAACCTCAA+GGG - chr7.2:72799597-72799616 None:intergenic 30.0%
! TACCCCTAAAATTAAGTTGT+TGG + chr7.2:72799890-72799909 MS.gene044841:intron 30.0%
! TTCAAGATTTGGAACAAGTT+AGG + chr7.2:72800493-72800512 MS.gene044841:CDS 30.0%
!! CTATTTCTAATATTAGGGGA+GGG + chr7.2:72800988-72801007 MS.gene044841:CDS 30.0%
!! GAAAAATTTGGTTTGGTTCA+AGG + chr7.2:72800948-72800967 MS.gene044841:CDS 30.0%
!! GAACTATGAACAATGGATTA+AGG + chr7.2:72800859-72800878 MS.gene044841:CDS 30.0%
!! TCTATTTCTAATATTAGGGG+AGG + chr7.2:72800987-72801006 MS.gene044841:CDS 30.0%
!!! GATGATAGGTAGTTTGTTTT+TGG - chr7.2:72799832-72799851 None:intergenic 30.0%
AAAATGGCTCAACCGATTAA+TGG - chr7.2:72799393-72799412 None:intergenic 35.0%
AAATGTAGCAAGTCACTTAC+AGG + chr7.2:72800033-72800052 MS.gene044841:CDS 35.0%
ACTTCCATATTTGCAAACAC+TGG + chr7.2:72800371-72800390 MS.gene044841:CDS 35.0%
AGAAAGAGTAAAGAATGCCA+AGG + chr7.2:72799181-72799200 MS.gene044841:CDS 35.0%
AGCTATGATCAATACAGGTT+TGG + chr7.2:72800561-72800580 MS.gene044841:CDS 35.0%
AGGCCTATAAACAATGATAG+TGG - chr7.2:72799654-72799673 None:intergenic 35.0%
AGTGTCTTCGAGATTAAACT+TGG - chr7.2:72798986-72799005 None:intergenic 35.0%
ATCTCGAAGACACTAGAAAA+TGG + chr7.2:72798992-72799011 MS.gene044841:CDS 35.0%
CAACATGATGTGTTGGAAAT+TGG - chr7.2:72800440-72800459 None:intergenic 35.0%
CAATTTCCAACACATCATGT+TGG + chr7.2:72800438-72800457 MS.gene044841:CDS 35.0%
CAGACAATACCTCAGAAAAA+TGG - chr7.2:72799409-72799428 None:intergenic 35.0%
GCTGAAGACTTCAAAGATAT+TGG + chr7.2:72799046-72799065 MS.gene044841:CDS 35.0%
GGAATTGGAACTATGAACAA+TGG + chr7.2:72800852-72800871 MS.gene044841:CDS 35.0%
GTGTTGGAAATTGGTTGAAA+TGG - chr7.2:72800431-72800450 None:intergenic 35.0%
GTTATTCTCTGCAACAACAT+CGG - chr7.2:72800541-72800560 None:intergenic 35.0%
TAGGCTTGGAAAATCAAAGT+TGG + chr7.2:72800512-72800531 MS.gene044841:CDS 35.0%
TATGCCAGTGTTTGCAAATA+TGG - chr7.2:72800378-72800397 None:intergenic 35.0%
TCATCATATAGAGCTGAACA+AGG + chr7.2:72800654-72800673 MS.gene044841:CDS 35.0%
TCCTTATATACAAAAAGGGC+TGG + chr7.2:72800467-72800486 MS.gene044841:CDS 35.0%
TGCTATTGACCAAATTGGAT+TGG + chr7.2:72799276-72799295 MS.gene044841:CDS 35.0%
TTAAACTCTTACCACTAAGC+TGG + chr7.2:72799611-72799630 MS.gene044841:intron 35.0%
TTATTCAGCTGAATTCCGAA+AGG - chr7.2:72800816-72800835 None:intergenic 35.0%
TTCGGAATTCAGCTGAATAA+TGG + chr7.2:72800816-72800835 MS.gene044841:CDS 35.0%
TTGAAGTCTTCAGCACAAAA+AGG - chr7.2:72799040-72799059 None:intergenic 35.0%
! CAATGCTTCTTTTCGTTCTT+AGG - chr7.2:72799157-72799176 None:intergenic 35.0%
! GTTTGCAAATATGGAAGTGT+TGG - chr7.2:72800369-72800388 None:intergenic 35.0%
! TAGCAAGCAGAAACATTTTG+TGG - chr7.2:72799261-72799280 None:intergenic 35.0%
!! AAATTTGGTTTGGTTCAAGG+AGG + chr7.2:72800951-72800970 MS.gene044841:CDS 35.0%
!! AATTTGGTTTGGTTCAAGGA+GGG + chr7.2:72800952-72800971 MS.gene044841:CDS 35.0%
AATTGGCCAACATGATGTGT+TGG - chr7.2:72800447-72800466 None:intergenic 40.0%
ACACTGGCATATCAAACAAG+AGG + chr7.2:72800387-72800406 MS.gene044841:CDS 40.0%
AGATGTTGCAGAGAAAGGAA+TGG + chr7.2:72800239-72800258 MS.gene044841:CDS 40.0%
CTTGAATATCTCTCTCTCCT+TGG - chr7.2:72799201-72799220 None:intergenic 40.0%
TAACTTTGTAACCTCAAGGG+AGG - chr7.2:72799594-72799613 None:intergenic 40.0%
TAGAGCTGAACAAGGATTGA+TGG + chr7.2:72800662-72800681 MS.gene044841:CDS 40.0%
TTGGCACAGCCTCTAAATTA+GGG - chr7.2:72799970-72799989 None:intergenic 40.0%
TTTGGCACAGCCTCTAAATT+AGG - chr7.2:72799971-72799990 None:intergenic 40.0%
! AATAATGGAGCAGGAATGGT+TGG + chr7.2:72800831-72800850 MS.gene044841:CDS 40.0%
! ACATTTTCTCTGGTCACGTT+AGG - chr7.2:72800019-72800038 None:intergenic 40.0%
! ATTCAGCTGAATAATGGAGC+AGG + chr7.2:72800822-72800841 MS.gene044841:CDS 40.0%
! GATTTGGAACAAGTTAGGCT+TGG + chr7.2:72800498-72800517 MS.gene044841:CDS 40.0%
! GCCAGCCCTTTTTGTATATA+AGG - chr7.2:72800471-72800490 None:intergenic 40.0%
!! CTGCTTGCTATTGACCAAAT+TGG + chr7.2:72799271-72799290 MS.gene044841:CDS 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG + chr7.2:72799412-72799431 MS.gene044841:intron 40.0%
!!! GATTTTAACTTCCTCCCTTG+AGG + chr7.2:72799580-72799599 MS.gene044841:intron 40.0%
!!! GTGACTTGCTACATTTTCTC+TGG - chr7.2:72800029-72800048 None:intergenic 40.0%
GGCTGTGCCAAAGAAAATTC+TGG + chr7.2:72799979-72799998 MS.gene044841:CDS 45.0%
GTTGCAGAGAAAGGAATGGT+TGG + chr7.2:72800243-72800262 MS.gene044841:CDS 45.0%
TCTAATATTAGGGGAGGGAG+TGG + chr7.2:72800993-72801012 MS.gene044841:CDS 45.0%
TGGCTCAACCGATTAATGGT+TGG - chr7.2:72799389-72799408 None:intergenic 45.0%
! GCTGAATAATGGAGCAGGAA+TGG + chr7.2:72800827-72800846 MS.gene044841:CDS 45.0%
!! AGTGGAAGAGAGTTTCTAGC+AGG + chr7.2:72801011-72801030 MS.gene044841:CDS 45.0%
!! CTCACAGAGCTCTAAGATCA+AGG + chr7.2:72800274-72800293 MS.gene044841:CDS 45.0%
!!! TCGGTTGAGCCATTTTTCTG+AGG + chr7.2:72799397-72799416 MS.gene044841:intron 45.0%
CTGCGAGATGTTGCAGAGAA+AGG + chr7.2:72800234-72800253 MS.gene044841:CDS 50.0%
GCAGAGAAAGGAATGGTTGG+AGG + chr7.2:72800246-72800265 MS.gene044841:CDS 50.0%
GGAGCAGGAATGGTTGGAAT+TGG + chr7.2:72800837-72800856 MS.gene044841:CDS 50.0%
! GGTTTGGTTCAAGGAGGGTT+TGG + chr7.2:72800957-72800976 MS.gene044841:CDS 50.0%
!! AGGGCTGGCTCTTCAAGATT+TGG + chr7.2:72800482-72800501 MS.gene044841:CDS 50.0%
TGCACTAGCTGCCAGCTTAG+TGG - chr7.2:72799625-72799644 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 72798965 72801094 72798965 ID=MS.gene044841
chr7.2 mRNA 72798965 72801094 72798965 ID=MS.gene044841.t1;Parent=MS.gene044841
chr7.2 exon 72798965 72799301 72798965 ID=MS.gene044841.t1.exon1;Parent=MS.gene044841.t1
chr7.2 CDS 72798965 72799301 72798965 ID=cds.MS.gene044841.t1;Parent=MS.gene044841.t1
chr7.2 exon 72799978 72800054 72799978 ID=MS.gene044841.t1.exon2;Parent=MS.gene044841.t1
chr7.2 CDS 72799978 72800054 72799978 ID=cds.MS.gene044841.t1;Parent=MS.gene044841.t1
chr7.2 exon 72800219 72801094 72800219 ID=MS.gene044841.t1.exon3;Parent=MS.gene044841.t1
chr7.2 CDS 72800219 72801094 72800219 ID=cds.MS.gene044841.t1;Parent=MS.gene044841.t1
Gene Sequence

>MS.gene044841

ATGTCTGAAGACAATAGGCCAAGTTTAATCTCGAAGACACTAGAAAATGGAGCTGCACAGTACATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTGGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAGTTTATTTGTGAGAAGCGAAGAAGAAGAGATATCAAGTGAACCTAAGAACGAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAATGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTCCACAAAATGTTTCTGCTTGCTATTGACCAAATTGGATTGGAAAGTAAGTCATCTTTTAAAAATATTTGAAAGGCTTTTTAAATCTAAATAGTTTTAAATATACTTTTAAGTTTTATGTGTACTTCTTCCAACCATTAATCGGTTGAGCCATTTTTCTGAGGTATTGTCTGCTTTGGATCTTATATAAATGTATATGCCACTATCAATCCAACAATGAAATATACTTGAGGTCAAAAGAAATATAATAGACTATTTTAATGTACACACCGCTATTATTTTACAGTGATATTATAATGGTCATTTGACAACCATATCATATGGGATTTTAACTTCCTCCCTTGAGGTTACAAAGTTAAACTCTTACCACTAAGCTGGCAGCTAGTGCACAAACACCACTATCATTGTTTATAGGCCTAAGTAAATATACTAATAACAATTTAGTAATTTACATAGGACACACTTAATTTTGCAAATGTTTTCACATCAGACATATGTTTTATATTTTACACGATGAACATAAATACAATTAATATCAAATTACATGCATTAATAATAATTTACATATATTGTCCAAAAACAAACTACCTATCATCCAAATTTTAATATTAATACACACTTTGCATTTGTTTCATACCCCTAAAATTAAGTTGTTGGCTCTTTCATTATATATATAGCTAACTACAATGAGTTTTCTTGTGTTTATCTTTTCCCTAATTTAGAGGCTGTGCCAAAGAAAATTCTGGAGATCATGAATATACCTAACGTGACCAGAGAAAATGTAGCAAGTCACTTACAGGTTTTTCTTCTCAATTTACTTCATATATTTCCATAATATTATAATATCATCATTAGAAGACTGAATGATAATGTTGATAATTTTTCTGTCTCTAATTTTTGTAAACTTTTTCTAGTATATCTTACAAACTATAATGCTTTAGTATATGATCACAATACTTGCAGAAATATCGCATATTTCTGCGAGATGTTGCAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTCTAAGATCAAGGTTTGCATCAAGTCTTCCGATGTCTATGATAAGAGAAATCGAAGAAAAAAGAACAAACAAACTTCATGCGCCAACACTTCCATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACGATGTTTTTAACCATTTCAACCAATTTCCAACACATCATGTTGGCCAATTTCCTTATATACAAAAAGGGCTGGCTCTTCAAGATTTGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCCGATGTTGTTGCAGAGAATAACAGCTATGATCAATACAGGTTTGGAATAAGCTCTTCAAGCCTTCCAATTTTTCAAGCAAAAAACTCATTCAATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGCTGAACAAGGATTGATGGTTTCTTCTTCTTCTTCAAGTTTCTTAACAAGGGATTTTAAATTTGCTGATATTAGAAACCAAAATTATGGTGTTAAAAGCACTAATGTCATGCCTCATAAATTTACTTCTGATGTAAGAAATAACAATCCTTTCGGAATTCAGCTGAATAATGGAGCAGGAATGGTTGGAATTGGAACTATGAACAATGGATTAAGGGCTTCTAGTGCAAATAACAATGAAACGGGTCAAAATGAAAATATGAATTTTAGATCTTTTGTGAATGAAAAATTTGGTTTGGTTCAAGGAGGGTTTGGTCTAGATTCTATTTCTAATATTAGGGGAGGGAGTGGAAGAGAGTTTCTAGCAGGATCAGTTAATATAATGAAGGAAATGTTACAAAGAATAGACAATTTCCTCGATATAAATTAG
Protein sequence

>MS.gene044841.t1

MSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIGKYVMEAKKEKLFIESLFVRSEEEEISSEPKNEKKHCKRKSKECQGERDIQVVKKQKLVWTPYLHKMFLLAIDQIGLEKAVPKKILEIMNIPNVTRENVASHLQKYRIFLRDVAEKGMVGGISHRALRSRFASSLPMSMIREIEEKRTNKLHAPTLPYLQTLAYQTRGANDVFNHFNQFPTHHVGQFPYIQKGLALQDLEQVRLGKSKLEADVVAENNSYDQYRFGISSSSLPIFQAKNSFNDGASTSFSSYRAEQGLMVSSSSSSFLTRDFKFADIRNQNYGVKSTNVMPHKFTSDVRNNNPFGIQLNNGAGMVGIGTMNNGLRASSANNNETGQNENMNFRSFVNEKFGLVQGGFGLDSISNIRGGSGREFLAGSVNIMKEMLQRIDNFLDIN