Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04485.t1 | RHN73282.1 | 91.1 | 721 | 64 | 0 | 203 | 923 | 1 | 721 | 0.00E+00 | 1342 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04485.t1 | Q9SWG3 | 34.7 | 646 | 397 | 11 | 199 | 833 | 51 | 682 | 5.6e-109 | 397.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04485.t1 | A0A396J7J0 | 91.1 | 721 | 64 | 0 | 203 | 923 | 1 | 721 | 0.0e+00 | 1342.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04485.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04485.t1 | MTR_2g090105 | 56.716 | 201 | 48 | 4 | 777 | 977 | 16 | 177 | 5.77e-61 | 206 |
| MS.gene04485.t1 | MTR_6g051425 | 36.318 | 201 | 127 | 1 | 265 | 464 | 91 | 291 | 4.48e-37 | 143 |
| MS.gene04485.t1 | MTR_7g446060 | 66.667 | 90 | 30 | 0 | 276 | 365 | 2 | 91 | 3.72e-34 | 128 |
| MS.gene04485.t1 | MTR_7g031620 | 59.259 | 81 | 33 | 0 | 205 | 285 | 2 | 82 | 1.13e-26 | 104 |
| MS.gene04485.t1 | MTR_5g023310 | 38.217 | 157 | 30 | 2 | 330 | 486 | 16 | 105 | 5.94e-26 | 103 |
| MS.gene04485.t1 | MTR_4g035820 | 29.520 | 271 | 170 | 7 | 184 | 439 | 60 | 324 | 1.25e-22 | 104 |
| MS.gene04485.t1 | MTR_4g035820 | 33.113 | 151 | 93 | 4 | 530 | 675 | 283 | 430 | 2.09e-11 | 68.6 |
| MS.gene04485.t1 | MTR_0558s0020 | 27.099 | 262 | 157 | 7 | 203 | 435 | 40 | 296 | 3.38e-21 | 95.5 |
| MS.gene04485.t1 | MTR_1g008290 | 38.931 | 131 | 77 | 2 | 261 | 391 | 17 | 144 | 3.76e-21 | 91.3 |
| MS.gene04485.t1 | MTR_0856s0010 | 36.220 | 127 | 80 | 1 | 199 | 324 | 34 | 160 | 7.05e-20 | 88.2 |
| MS.gene04485.t1 | MTR_8g446020 | 32.414 | 145 | 97 | 1 | 292 | 435 | 112 | 256 | 1.60e-18 | 87.0 |
| MS.gene04485.t1 | MTR_1g070355 | 29.020 | 255 | 160 | 9 | 187 | 429 | 64 | 309 | 1.78e-16 | 84.3 |
| MS.gene04485.t1 | MTR_6g090505 | 26.425 | 193 | 136 | 3 | 263 | 451 | 57 | 247 | 9.99e-15 | 77.4 |
| MS.gene04485.t1 | MTR_7g446480 | 29.814 | 161 | 111 | 2 | 285 | 443 | 154 | 314 | 2.44e-14 | 75.5 |
| MS.gene04485.t1 | MTR_7g446510 | 29.193 | 161 | 112 | 2 | 285 | 443 | 169 | 329 | 5.03e-14 | 75.1 |
| MS.gene04485.t1 | MTR_0177s0050 | 39.837 | 123 | 59 | 4 | 10 | 130 | 206 | 315 | 1.76e-13 | 73.9 |
| MS.gene04485.t1 | MTR_1g083640 | 25.322 | 233 | 140 | 7 | 203 | 406 | 55 | 282 | 3.62e-13 | 71.6 |
| MS.gene04485.t1 | MTR_6g022070 | 28.082 | 146 | 101 | 1 | 489 | 634 | 1 | 142 | 1.25e-11 | 67.8 |
| MS.gene04485.t1 | MTR_7g446520 | 25.131 | 191 | 135 | 3 | 249 | 437 | 131 | 315 | 1.79e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04485.t1 | AT4G15090 | 35.855 | 608 | 374 | 9 | 199 | 800 | 51 | 648 | 1.26e-123 | 396 |
| MS.gene04485.t1 | AT4G15090 | 35.855 | 608 | 374 | 9 | 199 | 800 | 51 | 648 | 1.26e-123 | 396 |
| MS.gene04485.t1 | AT4G15090 | 35.855 | 608 | 374 | 9 | 199 | 800 | 51 | 648 | 1.26e-123 | 396 |
| MS.gene04485.t1 | AT4G15090 | 35.855 | 608 | 374 | 9 | 199 | 800 | 51 | 648 | 1.26e-123 | 396 |
| MS.gene04485.t1 | AT4G15090 | 35.855 | 608 | 374 | 9 | 199 | 800 | 51 | 648 | 1.26e-123 | 396 |
| MS.gene04485.t1 | AT4G38180 | 35.739 | 582 | 351 | 10 | 189 | 758 | 64 | 634 | 2.31e-115 | 373 |
| MS.gene04485.t1 | AT1G76320 | 35.387 | 568 | 341 | 9 | 203 | 763 | 1 | 549 | 2.85e-110 | 356 |
| MS.gene04485.t1 | AT1G76320 | 32.316 | 721 | 436 | 18 | 203 | 894 | 1 | 698 | 2.89e-110 | 358 |
| MS.gene04485.t1 | AT1G76320 | 35.387 | 568 | 341 | 9 | 203 | 763 | 1 | 549 | 3.48e-110 | 358 |
| MS.gene04485.t1 | AT1G76320 | 35.387 | 568 | 341 | 9 | 203 | 763 | 1 | 549 | 3.48e-110 | 358 |
| MS.gene04485.t1 | AT3G22170 | 34.596 | 581 | 333 | 7 | 199 | 761 | 70 | 621 | 2.19e-108 | 356 |
| MS.gene04485.t1 | AT3G22170 | 34.596 | 581 | 333 | 7 | 199 | 761 | 70 | 621 | 2.19e-108 | 356 |
| MS.gene04485.t1 | AT1G52520 | 34.622 | 569 | 354 | 11 | 197 | 759 | 83 | 639 | 4.65e-104 | 340 |
| MS.gene04485.t1 | AT1G80010 | 33.333 | 603 | 367 | 13 | 179 | 762 | 79 | 665 | 7.47e-95 | 316 |
| MS.gene04485.t1 | AT4G19990 | 32.516 | 612 | 333 | 12 | 179 | 763 | 6 | 564 | 1.46e-91 | 308 |
| MS.gene04485.t1 | AT4G19990 | 32.516 | 612 | 333 | 12 | 179 | 763 | 6 | 564 | 1.46e-91 | 308 |
| MS.gene04485.t1 | AT4G19990 | 32.516 | 612 | 333 | 12 | 179 | 763 | 6 | 564 | 1.69e-91 | 308 |
| MS.gene04485.t1 | AT4G19990 | 32.516 | 612 | 333 | 12 | 179 | 763 | 6 | 564 | 1.88e-91 | 308 |
| MS.gene04485.t1 | AT4G19990 | 32.516 | 612 | 333 | 12 | 179 | 763 | 6 | 564 | 1.88e-91 | 308 |
| MS.gene04485.t1 | AT4G19990 | 32.516 | 612 | 333 | 12 | 179 | 763 | 20 | 578 | 3.56e-91 | 307 |
| MS.gene04485.t1 | AT4G19990 | 33.516 | 546 | 309 | 10 | 224 | 763 | 10 | 507 | 9.51e-88 | 296 |
| MS.gene04485.t1 | AT2G27110 | 31.641 | 591 | 358 | 13 | 181 | 758 | 22 | 579 | 5.31e-86 | 295 |
| MS.gene04485.t1 | AT2G27110 | 31.641 | 591 | 358 | 13 | 181 | 758 | 22 | 579 | 5.31e-86 | 295 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 176 | 550 | 4.70e-81 | 280 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 135 | 509 | 6.93e-81 | 279 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 135 | 509 | 7.52e-81 | 279 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 176 | 550 | 7.88e-81 | 280 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 176 | 550 | 7.88e-81 | 280 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 176 | 550 | 8.42e-81 | 280 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 176 | 550 | 8.42e-81 | 280 |
| MS.gene04485.t1 | AT2G32250 | 36.911 | 382 | 233 | 3 | 375 | 755 | 176 | 550 | 8.42e-81 | 280 |
| MS.gene04485.t1 | AT2G27110 | 35.535 | 439 | 262 | 9 | 323 | 758 | 14 | 434 | 1.44e-80 | 277 |
| MS.gene04485.t1 | AT3G06250 | 30.961 | 562 | 335 | 13 | 199 | 756 | 190 | 702 | 2.35e-75 | 263 |
| MS.gene04485.t1 | AT3G06250 | 30.961 | 562 | 335 | 13 | 199 | 756 | 190 | 702 | 2.35e-75 | 263 |
| MS.gene04485.t1 | AT3G06250 | 30.961 | 562 | 335 | 13 | 199 | 756 | 190 | 702 | 2.35e-75 | 263 |
| MS.gene04485.t1 | AT5G18960 | 31.972 | 563 | 331 | 17 | 199 | 756 | 211 | 726 | 7.32e-75 | 263 |
| MS.gene04485.t1 | AT5G18960 | 31.972 | 563 | 331 | 17 | 199 | 756 | 211 | 726 | 7.32e-75 | 263 |
| MS.gene04485.t1 | AT4G38170 | 34.483 | 406 | 248 | 7 | 370 | 770 | 19 | 411 | 5.57e-73 | 251 |
| MS.gene04485.t1 | AT1G10240 | 28.961 | 587 | 357 | 21 | 199 | 755 | 48 | 604 | 3.39e-64 | 230 |
| MS.gene04485.t1 | AT1G10240 | 28.961 | 587 | 357 | 21 | 199 | 755 | 48 | 604 | 3.39e-64 | 230 |
| MS.gene04485.t1 | AT5G28530 | 26.930 | 583 | 381 | 18 | 198 | 756 | 54 | 615 | 3.05e-48 | 184 |
| MS.gene04485.t1 | AT5G28530 | 26.930 | 583 | 381 | 18 | 198 | 756 | 54 | 615 | 3.05e-48 | 184 |
| MS.gene04485.t1 | AT5G28530 | 26.917 | 587 | 380 | 19 | 198 | 756 | 54 | 619 | 2.45e-47 | 181 |
| MS.gene04485.t1 | AT5G28530 | 28.125 | 320 | 207 | 10 | 441 | 756 | 252 | 552 | 2.84e-27 | 119 |
| MS.gene04485.t1 | AT5G28530 | 27.640 | 322 | 210 | 10 | 441 | 756 | 252 | 556 | 1.80e-26 | 116 |
Find 150 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCTCCACAACAATTTA+AGG | 0.108400 | 3.4:-58589326 | MS.gene04485:CDS |
| CATATGTAAGGGACACATTT+TGG | 0.131035 | 3.4:-58587159 | MS.gene04485:CDS |
| TGCCACTTGTTTGAATTTAA+AGG | 0.135288 | 3.4:-58586731 | MS.gene04485:CDS |
| CGTGCCATCTAATTATATTT+TGG | 0.139147 | 3.4:-58586654 | MS.gene04485:CDS |
| CTTTACCAATGCAAAGTTTC+AGG | 0.186559 | 3.4:-58586924 | MS.gene04485:CDS |
| CACACTGAATTTAAAGTCTT+TGG | 0.192763 | 3.4:+58589360 | None:intergenic |
| GTCGATTACGAAATGTGTTT+TGG | 0.243742 | 3.4:-58587696 | MS.gene04485:CDS |
| CAATCTTCTTCTATAATTCT+AGG | 0.251982 | 3.4:+58586419 | None:intergenic |
| AACCCTCCTTTGGTCATTCT+TGG | 0.254190 | 3.4:+58589255 | None:intergenic |
| TATGCTCAGCGGGTAGGTTT+TGG | 0.263362 | 3.4:-58588231 | MS.gene04485:CDS |
| CAAACACCATTTCACAAGTA+TGG | 0.271250 | 3.4:+58589134 | None:intergenic |
| TCACCAAGATGTTCTTGATT+TGG | 0.273818 | 3.4:+58585813 | None:intergenic |
| TGTTGAAGCAAATTCATAAA+AGG | 0.279740 | 3.4:+58586526 | None:intergenic |
| TGAGAAGCAAGGAAACTTAT+AGG | 0.290326 | 3.4:-58589177 | MS.gene04485:CDS |
| CCTTTACTTCGAGCCAGTTT+AGG | 0.301900 | 3.4:+58586365 | None:intergenic |
| CGAGAGCACAATGTATTAAA+TGG | 0.304628 | 3.4:-58589295 | MS.gene04485:CDS |
| AGAGCCGCATATGAATATTT+TGG | 0.320351 | 3.4:-58587658 | MS.gene04485:CDS |
| TTGCTTCAGTGTTGTCTTTG+AGG | 0.321090 | 3.4:+58587075 | None:intergenic |
| AATTTCATACTCACCTCTTC+AGG | 0.327852 | 3.4:+58586233 | None:intergenic |
| CAATACAGAAATACTTTGTT+AGG | 0.333443 | 3.4:-58587771 | MS.gene04485:CDS |
| TTTCAACAGATTGGAGGGTT+TGG | 0.335508 | 3.4:-58586858 | MS.gene04485:CDS |
| TACTTGTTCAGATCTGTTAT+AGG | 0.336018 | 3.4:-58585614 | None:intergenic |
| AGGAAATTACTGAGTATTAC+AGG | 0.339510 | 3.4:-58588257 | MS.gene04485:CDS |
| TGATCAGTGATTATGGCATT+TGG | 0.345022 | 3.4:+58587451 | None:intergenic |
| CGAGAAGTCAACAAATGAAT+TGG | 0.348297 | 3.4:-58589458 | MS.gene04485:CDS |
| GATCATGCTTGGAACTCTTA+AGG | 0.357984 | 3.4:+58589107 | None:intergenic |
| ATTTGAGTCTTGTGATGAAT+TGG | 0.359102 | 3.4:-58588358 | MS.gene04485:CDS |
| CCTTGTGCTGGGATGTCATT+TGG | 0.364680 | 3.4:-58588288 | MS.gene04485:CDS |
| TCAAGACGGAGCAATGAAAA+AGG | 0.370440 | 3.4:-58587431 | MS.gene04485:CDS |
| ACTTCTCCACAACAATTTAA+GGG | 0.371955 | 3.4:-58589325 | MS.gene04485:CDS |
| TCTATTGAACTTCCTTGTAT+TGG | 0.374726 | 3.4:+58589049 | None:intergenic |
| CTAGGAGATGTTTCATTACA+TGG | 0.377943 | 3.4:+58586437 | None:intergenic |
| ATTGGTAGCTGTTGTGTAGT+TGG | 0.392402 | 3.4:+58589067 | None:intergenic |
| AATGTATGGAGTAGTGAAAA+TGG | 0.393540 | 3.4:-58585864 | MS.gene04485:CDS |
| CCATTTCACAAGTATGGTTT+CGG | 0.394972 | 3.4:+58589140 | None:intergenic |
| CGACTTTCGTTCATTTAATA+CGG | 0.395887 | 3.4:-58586996 | MS.gene04485:CDS |
| GAGAAGCAAGGAAACTTATA+GGG | 0.399259 | 3.4:-58589176 | MS.gene04485:CDS |
| GATGAAAGATATTGTGTTCA+TGG | 0.400462 | 3.4:-58586792 | MS.gene04485:CDS |
| AAACAGCTTTAACCCTCCTT+TGG | 0.404711 | 3.4:+58589245 | None:intergenic |
| CTTCTACATTGAACTTATCA+TGG | 0.405015 | 3.4:+58589392 | None:intergenic |
| TACCATTCTTGATCCTAAAC+TGG | 0.409646 | 3.4:-58586378 | MS.gene04485:CDS |
| TCTCAACTTGGTGATGGAAT+TGG | 0.412917 | 3.4:-58586089 | MS.gene04485:CDS |
| CTGAAACTTTGCATTGGTAA+AGG | 0.413276 | 3.4:+58586925 | None:intergenic |
| GATCTGAACAAGTAGCATTA+TGG | 0.413793 | 3.4:+58585623 | None:intergenic |
| CTCGTCATCGGTGGTGCTTA+TGG | 0.417009 | 3.4:-58587384 | MS.gene04485:CDS |
| ACATTGAACTTATCATGGTT+CGG | 0.417239 | 3.4:+58589397 | None:intergenic |
| TCCTTGGTCGGTGAAGCTAA+TGG | 0.421297 | 3.4:-58587883 | MS.gene04485:CDS |
| TCATGCATGTTTCAACAGAT+TGG | 0.428105 | 3.4:-58586867 | MS.gene04485:CDS |
| ATTTAGTGAAAGTGATGAAC+TGG | 0.429598 | 3.4:-58586484 | MS.gene04485:CDS |
| ATATTCTAGTCAAGTAAATC+AGG | 0.431513 | 3.4:-58586036 | MS.gene04485:intron |
| TGAATTGGACAATGCATCTC+AGG | 0.431925 | 3.4:-58589443 | MS.gene04485:CDS |
| TCATGGTCAGTCAATGTTGT+TGG | 0.434993 | 3.4:-58587557 | MS.gene04485:CDS |
| ATATTTATTTGTTAAGTAAG+TGG | 0.436838 | 3.4:+58587615 | None:intergenic |
| CCTAAACTGGCTCGAAGTAA+AGG | 0.438698 | 3.4:-58586365 | MS.gene04485:CDS |
| CTAAAATATCGTGCTTTCCC+TGG | 0.443457 | 3.4:+58587991 | None:intergenic |
| AGCAGGAGCAGAACAATGTA+TGG | 0.443830 | 3.4:-58585878 | MS.gene04485:intron |
| CTTTAAATTCAGTGTGGGAA+TGG | 0.446014 | 3.4:-58589353 | MS.gene04485:CDS |
| TCTATGACCTCAGAATAATA+AGG | 0.447361 | 3.4:+58585646 | None:intergenic |
| GTTGGGTTCCTGCATATGTA+AGG | 0.449314 | 3.4:-58587171 | MS.gene04485:CDS |
| TCCGTCTTGATCAGTGATTA+TGG | 0.451000 | 3.4:+58587444 | None:intergenic |
| CATGGTCAGTCAATGTTGTT+GGG | 0.451390 | 3.4:-58587556 | MS.gene04485:CDS |
| CTTTGTGTGCTTAAGCTCAC+AGG | 0.451912 | 3.4:-58586689 | MS.gene04485:CDS |
| CGTGCCAAAATATAATTAGA+TGG | 0.452638 | 3.4:+58586650 | None:intergenic |
| CCTTGGTCGGTGAAGCTAAT+GGG | 0.452698 | 3.4:-58587882 | MS.gene04485:CDS |
| CATAATCATGATCTAAGTCC+AGG | 0.457184 | 3.4:-58588009 | MS.gene04485:CDS |
| CATGACAATGAATGGTTGAA+AGG | 0.459474 | 3.4:-58587214 | MS.gene04485:CDS |
| AAAGTTTCAGGAATTCCAAT+TGG | 0.459609 | 3.4:-58586912 | MS.gene04485:CDS |
| GGGTATGAGAATCTCACATT+TGG | 0.461849 | 3.4:-58587862 | MS.gene04485:CDS |
| ACTGATATTGTGATCATGCT+TGG | 0.468423 | 3.4:+58589096 | None:intergenic |
| GAGTCGCTCAAAGAATTTGT+TGG | 0.471785 | 3.4:-58588127 | MS.gene04485:CDS |
| ATTTGTTGAACGACATCGTT+GGG | 0.471859 | 3.4:-58587188 | MS.gene04485:CDS |
| TCATAGAAGCTATTTCCAAT+TGG | 0.475525 | 3.4:+58586897 | None:intergenic |
| TGCCTTTAAATTCAAACAAG+TGG | 0.476652 | 3.4:+58586729 | None:intergenic |
| AAACAACCAAGTAAAAGTTT+CGG | 0.479809 | 3.4:+58587507 | None:intergenic |
| AATCCAAATCAAGAACATCT+TGG | 0.480865 | 3.4:-58585816 | MS.gene04485:CDS |
| CTAAACTGGCTCGAAGTAAA+GGG | 0.481198 | 3.4:-58586364 | MS.gene04485:CDS |
| ATTGCTTGTATTAGTCACTT+TGG | 0.482461 | 3.4:-58586971 | MS.gene04485:CDS |
| CACCACCGATGACGAGCCTT+CGG | 0.488875 | 3.4:+58587391 | None:intergenic |
| TAGGATCAAGAATGGTAGCT+TGG | 0.489659 | 3.4:+58586384 | None:intergenic |
| TTACTTGGTTGTTTAAGACT+TGG | 0.489960 | 3.4:-58587498 | MS.gene04485:CDS |
| TTTAAATTCAAACAAGTGGC+AGG | 0.494534 | 3.4:+58586733 | None:intergenic |
| ACTCCAACAAAAGGAGCAAA+AGG | 0.499554 | 3.4:+58587586 | None:intergenic |
| TTTGTTGTATTAGTGCAAGA+AGG | 0.500028 | 3.4:-58588381 | MS.gene04485:intron |
| ATGTTCTTGATTTGGATTGA+AGG | 0.500280 | 3.4:+58585821 | None:intergenic |
| ATTGAAAGATAAAATTGAAA+AGG | 0.501824 | 3.4:-58587029 | MS.gene04485:CDS |
| ATGACAATGAATGGTTGAAA+GGG | 0.502339 | 3.4:-58587213 | MS.gene04485:CDS |
| AATGTGTCCCTTACATATGC+AGG | 0.504374 | 3.4:+58587163 | None:intergenic |
| TGTTCTTGATTTGGATTGAA+GGG | 0.505856 | 3.4:+58585822 | None:intergenic |
| TTGGTTGTTTAAGACTTGGT+TGG | 0.512889 | 3.4:-58587494 | MS.gene04485:CDS |
| CCGAAACCATACTTGTGAAA+TGG | 0.516067 | 3.4:-58589140 | MS.gene04485:CDS |
| GCAGGCTCCTTATTATTCTG+AGG | 0.516319 | 3.4:-58585653 | MS.gene04485:intron |
| TTTGTTGGAGTAAACCATCA+TGG | 0.519035 | 3.4:-58587574 | MS.gene04485:CDS |
| AGCCAGTTTAGGATCAAGAA+TGG | 0.525245 | 3.4:+58586376 | None:intergenic |
| TGATGGTTTACTCCAACAAA+AGG | 0.525957 | 3.4:+58587577 | None:intergenic |
| TCTTTCCGAAGGCTCGTCAT+CGG | 0.529464 | 3.4:-58587396 | MS.gene04485:CDS |
| ACAAAGCCCTTAAATTGTTG+TGG | 0.532386 | 3.4:+58589319 | None:intergenic |
| GATGAAGAAACACCTTGTGC+TGG | 0.535095 | 3.4:-58588300 | MS.gene04485:CDS |
| AGGAATTATGCTCAGCGGGT+AGG | 0.535514 | 3.4:-58588237 | MS.gene04485:CDS |
| TGCATGTTTCAACAGATTGG+AGG | 0.536104 | 3.4:-58586864 | MS.gene04485:CDS |
| AAGGGCGTCCTCCTTCGAAA+AGG | 0.541721 | 3.4:-58586346 | MS.gene04485:CDS |
| GCATGTTTCAACAGATTGGA+GGG | 0.542407 | 3.4:-58586863 | MS.gene04485:CDS |
| GAATTCCTGAAACTTTGCAT+TGG | 0.542586 | 3.4:+58586919 | None:intergenic |
| TTACAGGAATTATGCTCAGC+GGG | 0.544325 | 3.4:-58588241 | MS.gene04485:CDS |
| TCTTGACCTCTAGATATGCA+TGG | 0.555627 | 3.4:+58586137 | None:intergenic |
| TTGCCAAGAATGACCAAAGG+AGG | 0.556526 | 3.4:-58589258 | MS.gene04485:CDS |
| CAGAAGCACAATGTGTGGAA+TGG | 0.557455 | 3.4:-58589485 | None:intergenic |
| CTTGACCTCTAGATATGCAT+GGG | 0.557675 | 3.4:+58586138 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 3.4:-58587931 | MS.gene04485:CDS |
| ACAACATTGACTGACCATGA+TGG | 0.560012 | 3.4:+58587560 | None:intergenic |
| TACAGATCTCAACTTGGTGA+TGG | 0.562461 | 3.4:-58586095 | MS.gene04485:CDS |
| AAGTAAGACGATTACGACTT+GGG | 0.562674 | 3.4:-58587810 | MS.gene04485:CDS |
| ACACAACAGCTACCAATACA+AGG | 0.563142 | 3.4:-58589061 | MS.gene04485:CDS |
| AATTGAGGTTGTCTTTCCGA+AGG | 0.571191 | 3.4:-58587407 | MS.gene04485:CDS |
| AAAGACTTTAAATTCAGTGT+GGG | 0.571518 | 3.4:-58589358 | MS.gene04485:CDS |
| AGACGATTACGACTTGGGAC+AGG | 0.573381 | 3.4:-58587805 | MS.gene04485:CDS |
| AGGTATACACTTATTAAATG+TGG | 0.576417 | 3.4:-58586605 | MS.gene04485:CDS |
| TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 3.4:-58587930 | MS.gene04485:CDS |
| CGTATTAAATGAACGAAAGT+CGG | 0.581453 | 3.4:+58586997 | None:intergenic |
| TTCCGAAGGCTCGTCATCGG+TGG | 0.582821 | 3.4:-58587393 | MS.gene04485:CDS |
| TGTGAGTATAGTGAGAAGCA+AGG | 0.584692 | 3.4:-58589188 | MS.gene04485:CDS |
| ACAAGCTACATGACAATGAA+TGG | 0.585144 | 3.4:-58587222 | MS.gene04485:CDS |
| AAAGTAAGACGATTACGACT+TGG | 0.586722 | 3.4:-58587811 | MS.gene04485:CDS |
| CCCATTAGCTTCACCGACCA+AGG | 0.589497 | 3.4:+58587882 | None:intergenic |
| TTGTGCTCTGTTGTCAAATG+AGG | 0.594293 | 3.4:-58587533 | MS.gene04485:CDS |
| GGTGGAGGAAAGATATAAAG+AGG | 0.601606 | 3.4:-58586628 | MS.gene04485:CDS |
| GATGTCATTTGGATCTGAGA+AGG | 0.602818 | 3.4:-58588277 | MS.gene04485:CDS |
| CCAAATGACATCCCAGCACA+AGG | 0.603480 | 3.4:+58588288 | None:intergenic |
| TATTTGTTGAACGACATCGT+TGG | 0.605298 | 3.4:-58587189 | MS.gene04485:CDS |
| ATGAAGAAACACCTTGTGCT+GGG | 0.605897 | 3.4:-58588299 | MS.gene04485:CDS |
| TGCCAAGAATGACCAAAGGA+GGG | 0.613417 | 3.4:-58589257 | MS.gene04485:CDS |
| TTGGGTTCCTGCATATGTAA+GGG | 0.614874 | 3.4:-58587170 | MS.gene04485:CDS |
| TTTATGAATTTGCTTCAACA+AGG | 0.617064 | 3.4:-58586523 | MS.gene04485:CDS |
| TTTGTGTGCTTAAGCTCACA+GGG | 0.620968 | 3.4:-58586688 | MS.gene04485:CDS |
| CAAAGACTTTAAATTCAGTG+TGG | 0.622276 | 3.4:-58589359 | MS.gene04485:CDS |
| ATATTCAGAAGCACAATGTG+TGG | 0.623308 | 3.4:-58589490 | None:intergenic |
| TTGGGGCTCAAATGAAGAGG+AGG | 0.629697 | 3.4:-58587954 | MS.gene04485:CDS |
| ATAATCATGATCTAAGTCCA+GGG | 0.638934 | 3.4:-58588008 | MS.gene04485:CDS |
| ATATTGGGGCTCAAATGAAG+AGG | 0.642532 | 3.4:-58587957 | MS.gene04485:CDS |
| AATGCGTGTATGTATTCAGA+CGG | 0.642701 | 3.4:-58588063 | MS.gene04485:CDS |
| ACATCTTGGTGAAGAAAACA+AGG | 0.642932 | 3.4:-58585802 | MS.gene04485:intron |
| GTGCGTTACAGATCTCAACT+TGG | 0.645749 | 3.4:-58586101 | MS.gene04485:CDS |
| GGAGGAAAGATATAAAGAGG+AGG | 0.646690 | 3.4:-58586625 | MS.gene04485:CDS |
| CAGGGCCCATGCATATCTAG+AGG | 0.652261 | 3.4:-58586143 | MS.gene04485:CDS |
| GTGTTGTGCAAGAATACTCA+CGG | 0.652670 | 3.4:-58588900 | MS.gene04485:CDS |
| GCCATAATCACTGATCAAGA+CGG | 0.657114 | 3.4:-58587445 | MS.gene04485:CDS |
| ACTTGGTTGGAATGTATGCA+TGG | 0.665132 | 3.4:-58587481 | MS.gene04485:CDS |
| TTCGCCAAAATATTCATATG+CGG | 0.669862 | 3.4:+58587654 | None:intergenic |
| AATTTGCCAAGAATGACCAA+AGG | 0.685310 | 3.4:-58589261 | MS.gene04485:CDS |
| CTGTGAGCTTAAGCACACAA+AGG | 0.692799 | 3.4:+58586690 | None:intergenic |
| ATTACAGGAATTATGCTCAG+CGG | 0.724935 | 3.4:-58588242 | MS.gene04485:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTTTAAAATAAAAGTA+TGG | + | chr3.4:58589141-58589160 | None:intergenic | 10.0% |
| !! | AAATATTTACATAGAAAACA+TGG | + | chr3.4:58589191-58589210 | None:intergenic | 15.0% |
| !! | ACTAAAATAAGTTCAAAAAA+AGG | - | chr3.4:58586886-58586905 | MS.gene04485:CDS | 15.0% |
| !! | ATTAATATCATAACAGAATT+TGG | - | chr3.4:58589352-58589371 | MS.gene04485:CDS | 15.0% |
| !! | ATTGAAAGATAAAATTGAAA+AGG | - | chr3.4:58588061-58588080 | MS.gene04485:CDS | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | + | chr3.4:58587478-58587497 | None:intergenic | 15.0% |
| !!! | TAGTCAATTTTATTATGTAA+TGG | - | chr3.4:58587356-58587375 | MS.gene04485:CDS | 15.0% |
| !!! | TCTAATTTAGGATTTTTTTA+TGG | - | chr3.4:58588924-58588943 | MS.gene04485:CDS | 15.0% |
| !!! | TTAATTTAATCTTATTTTGC+TGG | + | chr3.4:58586259-58586278 | None:intergenic | 15.0% |
| !! | AATAGATAGATCTAAAAAGA+GGG | - | chr3.4:58586058-58586077 | MS.gene04485:CDS | 20.0% |
| !! | TTAGATCGAACAAAAATATT+GGG | - | chr3.4:58587118-58587137 | MS.gene04485:CDS | 20.0% |
| !! | TTTAGATCGAACAAAAATAT+TGG | - | chr3.4:58587117-58587136 | MS.gene04485:CDS | 20.0% |
| !!! | AATTTAAAGGCATTTTATGT+AGG | - | chr3.4:58588372-58588391 | MS.gene04485:intron | 20.0% |
| !!! | ATAGTTGATAAGTCTAATTT+AGG | - | chr3.4:58588912-58588931 | MS.gene04485:CDS | 20.0% |
| !!! | TAAATGTGGTTTTGATAATT+TGG | - | chr3.4:58588499-58588518 | MS.gene04485:intron | 20.0% |
| !!! | TGTTTTTATATATCATTAGC+AGG | - | chr3.4:58586614-58586633 | MS.gene04485:CDS | 20.0% |
| !!! | TTAATGTGAGTAGAAATTTT+CGG | - | chr3.4:58587184-58587203 | MS.gene04485:CDS | 20.0% |
| !!! | TTCTATGTAAATATTTTAGC+AGG | - | chr3.4:58589195-58589214 | MS.gene04485:CDS | 20.0% |
| ! | AAAAAGATTCCAGAAAAGTT+TGG | - | chr3.4:58587738-58587757 | MS.gene04485:CDS | 25.0% |
| ! | AAACAACCAAGTAAAAGTTT+CGG | + | chr3.4:58587586-58587605 | None:intergenic | 25.0% |
| ! | AAAGACTTTAAATTCAGTGT+GGG | - | chr3.4:58585732-58585751 | MS.gene04485:intron | 25.0% |
| ! | ACTAAAAAGAACAACCAAAA+TGG | - | chr3.4:58588818-58588837 | MS.gene04485:intron | 25.0% |
| ! | AGGTATACACTTATTAAATG+TGG | - | chr3.4:58588485-58588504 | MS.gene04485:intron | 25.0% |
| ! | ATATTCTAGTCAAGTAAATC+AGG | - | chr3.4:58589054-58589073 | MS.gene04485:CDS | 25.0% |
| ! | ATTAAGTATGTATTCTTTGC+AGG | - | chr3.4:58589419-58589438 | MS.gene04485:CDS | 25.0% |
| ! | CAAAATGGTAAAAAAAGTCA+AGG | - | chr3.4:58588833-58588852 | MS.gene04485:intron | 25.0% |
| ! | CAATACAGAAATACTTTGTT+AGG | - | chr3.4:58587319-58587338 | MS.gene04485:CDS | 25.0% |
| ! | CAATAGATAGATCTAAAAAG+AGG | - | chr3.4:58586057-58586076 | MS.gene04485:CDS | 25.0% |
| ! | CAATCTTCTTCTATAATTCT+AGG | + | chr3.4:58588674-58588693 | None:intergenic | 25.0% |
| ! | TAGATCGAACAAAAATATTG+GGG | - | chr3.4:58587119-58587138 | MS.gene04485:CDS | 25.0% |
| ! | TGTTGAAGCAAATTCATAAA+AGG | + | chr3.4:58588567-58588586 | None:intergenic | 25.0% |
| ! | TTAGTATGCAATGTAATATC+AGG | + | chr3.4:58589164-58589183 | None:intergenic | 25.0% |
| !! | AAACATTGTATCCACATTTT+TGG | + | chr3.4:58585881-58585900 | None:intergenic | 25.0% |
| !! | AAAGTGATTTTATGATGAAG+TGG | - | chr3.4:58587826-58587845 | MS.gene04485:CDS | 25.0% |
| !! | AAGTGATTTTATGATGAAGT+GGG | - | chr3.4:58587827-58587846 | MS.gene04485:CDS | 25.0% |
| !! | TTTATGAATTTGCTTCAACA+AGG | - | chr3.4:58588567-58588586 | MS.gene04485:intron | 25.0% |
| !!! | AGTATGAACTCATTTTTTGA+TGG | - | chr3.4:58587984-58588003 | MS.gene04485:CDS | 25.0% |
| !!! | ATTTAGGATTTTTTTATGGC+AGG | - | chr3.4:58588928-58588947 | MS.gene04485:intron | 25.0% |
| !!! | ATTTTATTATGTAATGGACG+TGG | - | chr3.4:58587362-58587381 | MS.gene04485:CDS | 25.0% |
| !!! | CATCTAATTATATTTTGGCA+CGG | - | chr3.4:58588441-58588460 | MS.gene04485:intron | 25.0% |
| !!! | CTTGACTTTTTTTACCATTT+TGG | + | chr3.4:58588835-58588854 | None:intergenic | 25.0% |
| !!! | CTTGTTATGTGTTTTCTTAT+AGG | - | chr3.4:58586146-58586165 | MS.gene04485:intron | 25.0% |
| !!! | TAGGAAAATGCTATTTTGTA+CGG | - | chr3.4:58586165-58586184 | MS.gene04485:intron | 25.0% |
| !!! | TTTAGGATTTTTTTATGGCA+GGG | - | chr3.4:58588929-58588948 | MS.gene04485:intron | 25.0% |
| !!! | TTTTTTTAGTTACAAACTGC+AGG | + | chr3.4:58586295-58586314 | None:intergenic | 25.0% |
| AAAGTTTCAGGAATTCCAAT+TGG | - | chr3.4:58588178-58588197 | MS.gene04485:CDS | 30.0% | |
| AATCCAAATCAAGAACATCT+TGG | - | chr3.4:58589274-58589293 | MS.gene04485:CDS | 30.0% | |
| AATGTATGGAGTAGTGAAAA+TGG | - | chr3.4:58589226-58589245 | MS.gene04485:CDS | 30.0% | |
| ACATTGAACTTATCATGGTT+CGG | + | chr3.4:58585696-58585715 | None:intergenic | 30.0% | |
| ACTTCTCCACAACAATTTAA+GGG | - | chr3.4:58585765-58585784 | MS.gene04485:intron | 30.0% | |
| AGGAAATTACTGAGTATTAC+AGG | - | chr3.4:58586833-58586852 | MS.gene04485:CDS | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+AGG | - | chr3.4:58586895-58586914 | MS.gene04485:CDS | 30.0% | |
| ATAATCATGATCTAAGTCCA+GGG | - | chr3.4:58587082-58587101 | MS.gene04485:CDS | 30.0% | |
| ATGACAATGAATGGTTGAAA+GGG | - | chr3.4:58587877-58587896 | MS.gene04485:CDS | 30.0% | |
| ATTGCTTGTATTAGTCACTT+TGG | - | chr3.4:58588119-58588138 | MS.gene04485:CDS | 30.0% | |
| ATTTAGTGAAAGTGATGAAC+TGG | - | chr3.4:58588606-58588625 | MS.gene04485:intron | 30.0% | |
| CAAAGACTTTAAATTCAGTG+TGG | - | chr3.4:58585731-58585750 | MS.gene04485:intron | 30.0% | |
| CGACTTTCGTTCATTTAATA+CGG | - | chr3.4:58588094-58588113 | MS.gene04485:CDS | 30.0% | |
| CGTATTAAATGAACGAAAGT+CGG | + | chr3.4:58588096-58588115 | None:intergenic | 30.0% | |
| CGTGCCAAAATATAATTAGA+TGG | + | chr3.4:58588443-58588462 | None:intergenic | 30.0% | |
| CTTCTACATTGAACTTATCA+TGG | + | chr3.4:58585701-58585720 | None:intergenic | 30.0% | |
| GATGAAAGATATTGTGTTCA+TGG | - | chr3.4:58588298-58588317 | MS.gene04485:CDS | 30.0% | |
| GTTCAAAAAAAGGAGATGAA+GGG | - | chr3.4:58586896-58586915 | MS.gene04485:CDS | 30.0% | |
| GTTTCATTTACTACTTGTGT+TGG | - | chr3.4:58586659-58586678 | MS.gene04485:CDS | 30.0% | |
| TACTTCTCCACAACAATTTA+AGG | - | chr3.4:58585764-58585783 | MS.gene04485:intron | 30.0% | |
| TCTATGACCTCAGAATAATA+AGG | + | chr3.4:58589447-58589466 | None:intergenic | 30.0% | |
| TCTATTGAACTTCCTTGTAT+TGG | + | chr3.4:58586044-58586063 | None:intergenic | 30.0% | |
| TGCCTTTAAATTCAAACAAG+TGG | + | chr3.4:58588364-58588383 | None:intergenic | 30.0% | |
| TGTAAGTTCAACCAAAAATG+TGG | - | chr3.4:58585867-58585886 | MS.gene04485:CDS | 30.0% | |
| TTCGCCAAAATATTCATATG+CGG | + | chr3.4:58587439-58587458 | None:intergenic | 30.0% | |
| TTTAAATTCAAACAAGTGGC+AGG | + | chr3.4:58588360-58588379 | None:intergenic | 30.0% | |
| ! | AATCTGAAATACTCTGCTTT+AGG | + | chr3.4:58586558-58586577 | None:intergenic | 30.0% |
| ! | ATATGTAAGGGACACATTTT+GGG | - | chr3.4:58587932-58587951 | MS.gene04485:CDS | 30.0% |
| ! | ATCTGAAATACTCTGCTTTA+GGG | + | chr3.4:58586557-58586576 | None:intergenic | 30.0% |
| ! | ATTTGAGTCTTGTGATGAAT+TGG | - | chr3.4:58586732-58586751 | MS.gene04485:CDS | 30.0% |
| ! | CAAGGTGCAAATATAGATTT+TGG | - | chr3.4:58589306-58589325 | MS.gene04485:CDS | 30.0% |
| ! | CACACTGAATTTAAAGTCTT+TGG | + | chr3.4:58585733-58585752 | None:intergenic | 30.0% |
| ! | CGTGCCATCTAATTATATTT+TGG | - | chr3.4:58588436-58588455 | MS.gene04485:intron | 30.0% |
| ! | TCATAGAAGCTATTTCCAAT+TGG | + | chr3.4:58588196-58588215 | None:intergenic | 30.0% |
| ! | TCGATTACGAAATGTGTTTT+GGG | - | chr3.4:58587395-58587414 | MS.gene04485:CDS | 30.0% |
| ! | TGCCACTTGTTTGAATTTAA+AGG | - | chr3.4:58588359-58588378 | MS.gene04485:CDS | 30.0% |
| ! | TTACTTGGTTGTTTAAGACT+TGG | - | chr3.4:58587592-58587611 | MS.gene04485:CDS | 30.0% |
| ! | TTTGTTGTATTAGTGCAAGA+AGG | - | chr3.4:58586709-58586728 | MS.gene04485:CDS | 30.0% |
| !! | ATGTTCTTGATTTGGATTGA+AGG | + | chr3.4:58589272-58589291 | None:intergenic | 30.0% |
| !! | TGTTCTTGATTTGGATTGAA+GGG | + | chr3.4:58589271-58589290 | None:intergenic | 30.0% |
| AAAGTAAGACGATTACGACT+TGG | - | chr3.4:58587279-58587298 | MS.gene04485:CDS | 35.0% | |
| AAGTAAGACGATTACGACTT+GGG | - | chr3.4:58587280-58587299 | MS.gene04485:CDS | 35.0% | |
| AATGCGTGTATGTATTCAGA+CGG | - | chr3.4:58587027-58587046 | MS.gene04485:CDS | 35.0% | |
| AATTTCATACTCACCTCTTC+AGG | + | chr3.4:58588860-58588879 | None:intergenic | 35.0% | |
| AATTTGCCAAGAATGACCAA+AGG | - | chr3.4:58585829-58585848 | MS.gene04485:CDS | 35.0% | |
| ACAAAGCCCTTAAATTGTTG+TGG | + | chr3.4:58585774-58585793 | None:intergenic | 35.0% | |
| ACAAGCTACATGACAATGAA+TGG | - | chr3.4:58587868-58587887 | MS.gene04485:CDS | 35.0% | |
| ACATCTTGGTGAAGAAAACA+AGG | - | chr3.4:58589288-58589307 | MS.gene04485:CDS | 35.0% | |
| ACTGATATTGTGATCATGCT+TGG | + | chr3.4:58585997-58586016 | None:intergenic | 35.0% | |
| AGCAATGAAAAAGGCAATTG+AGG | - | chr3.4:58587668-58587687 | MS.gene04485:CDS | 35.0% | |
| ATTACAGGAATTATGCTCAG+CGG | - | chr3.4:58586848-58586867 | MS.gene04485:CDS | 35.0% | |
| CAAACACCATTTCACAAGTA+TGG | + | chr3.4:58585959-58585978 | None:intergenic | 35.0% | |
| CATAATCATGATCTAAGTCC+AGG | - | chr3.4:58587081-58587100 | MS.gene04485:CDS | 35.0% | |
| CATGACAATGAATGGTTGAA+AGG | - | chr3.4:58587876-58587895 | MS.gene04485:CDS | 35.0% | |
| CCATTTCACAAGTATGGTTT+CGG | + | chr3.4:58585953-58585972 | None:intergenic | 35.0% | |
| CGAGAAGTCAACAAATGAAT+TGG | - | chr3.4:58585632-58585651 | MS.gene04485:CDS | 35.0% | |
| CTAGGAGATGTTTCATTACA+TGG | + | chr3.4:58588656-58588675 | None:intergenic | 35.0% | |
| CTTTAAATTCAGTGTGGGAA+TGG | - | chr3.4:58585737-58585756 | MS.gene04485:intron | 35.0% | |
| CTTTACCAATGCAAAGTTTC+AGG | - | chr3.4:58588166-58588185 | MS.gene04485:CDS | 35.0% | |
| GAATTCCTGAAACTTTGCAT+TGG | + | chr3.4:58588174-58588193 | None:intergenic | 35.0% | |
| GAGAAGCAAGGAAACTTATA+GGG | - | chr3.4:58585914-58585933 | MS.gene04485:intron | 35.0% | |
| GATCTGAACAAGTAGCATTA+TGG | + | chr3.4:58589470-58589489 | None:intergenic | 35.0% | |
| GTAAGCAGAAACAGAGTTAT+GGG | + | chr3.4:58586509-58586528 | None:intergenic | 35.0% | |
| TACCATTCTTGATCCTAAAC+TGG | - | chr3.4:58588712-58588731 | MS.gene04485:intron | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | - | chr3.4:58587160-58587179 | MS.gene04485:CDS | 35.0% | |
| TCACCAAGATGTTCTTGATT+TGG | + | chr3.4:58589280-58589299 | None:intergenic | 35.0% | |
| TCATGCATGTTTCAACAGAT+TGG | - | chr3.4:58588223-58588242 | MS.gene04485:CDS | 35.0% | |
| TGAATCAATGGAAGCTATGA+TGG | + | chr3.4:58586531-58586550 | None:intergenic | 35.0% | |
| TGAGAAGCAAGGAAACTTAT+AGG | - | chr3.4:58585913-58585932 | MS.gene04485:intron | 35.0% | |
| TGATCAGTGATTATGGCATT+TGG | + | chr3.4:58587642-58587661 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+AGG | + | chr3.4:58587516-58587535 | None:intergenic | 35.0% | |
| TGTAACAAAAACGCAGTGTA+AGG | - | chr3.4:58586996-58587015 | MS.gene04485:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | - | chr3.4:58587159-58587178 | MS.gene04485:CDS | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | - | chr3.4:58587516-58587535 | MS.gene04485:CDS | 35.0% | |
| ! | AATCAGAGTATTTGATTCGC+GGG | + | chr3.4:58586406-58586425 | None:intergenic | 35.0% |
| ! | AGAGCCGCATATGAATATTT+TGG | - | chr3.4:58587432-58587451 | MS.gene04485:CDS | 35.0% |
| ! | AGGATACCGAAACTTTTACT+TGG | - | chr3.4:58587577-58587596 | MS.gene04485:CDS | 35.0% |
| ! | ATTTGTTGAACGACATCGTT+GGG | - | chr3.4:58587902-58587921 | MS.gene04485:CDS | 35.0% |
| ! | CAATCAGAGTATTTGATTCG+CGG | + | chr3.4:58586407-58586426 | None:intergenic | 35.0% |
| ! | CATATGTAAGGGACACATTT+TGG | - | chr3.4:58587931-58587950 | MS.gene04485:CDS | 35.0% |
| ! | CGAGAGCACAATGTATTAAA+TGG | - | chr3.4:58585795-58585814 | MS.gene04485:intron | 35.0% |
| ! | CTGAAACTTTGCATTGGTAA+AGG | + | chr3.4:58588168-58588187 | None:intergenic | 35.0% |
| ! | GTCGATTACGAAATGTGTTT+TGG | - | chr3.4:58587394-58587413 | MS.gene04485:CDS | 35.0% |
| ! | TATTTGTTGAACGACATCGT+TGG | - | chr3.4:58587901-58587920 | MS.gene04485:CDS | 35.0% |
| ! | TGCGTTTTTGTTACAGGATT+TGG | + | chr3.4:58586991-58587010 | None:intergenic | 35.0% |
| ! | TTACACTGCGTTTTTGTTAC+AGG | + | chr3.4:58586997-58587016 | None:intergenic | 35.0% |
| ! | TTAGAAGTCTTCCTTTTCGA+AGG | + | chr3.4:58588758-58588777 | None:intergenic | 35.0% |
| ! | TTGGTTGTTTAAGACTTGGT+TGG | - | chr3.4:58587596-58587615 | MS.gene04485:CDS | 35.0% |
| !! | TTGCATTGGTAAAGGCTTTT+TGG | + | chr3.4:58588160-58588179 | None:intergenic | 35.0% |
| !!! | CTAATTATATTTTGGCACGG+TGG | - | chr3.4:58588444-58588463 | MS.gene04485:intron | 35.0% |
| !!! | GTGGGTTTCCATTCTTTTTT+GGG | + | chr3.4:58586331-58586350 | None:intergenic | 35.0% |
| !!! | TGGTAAAGGCTTTTTGGAAT+TGG | + | chr3.4:58588154-58588173 | None:intergenic | 35.0% |
| !!! | TGTGGTTTTGATAATTTGGC+TGG | - | chr3.4:58588503-58588522 | MS.gene04485:intron | 35.0% |
| AAAAAGTCAAGGTCCTGAAG+AGG | - | chr3.4:58588844-58588863 | MS.gene04485:intron | 40.0% | |
| AATGTGTCCCTTACATATGC+AGG | + | chr3.4:58587930-58587949 | None:intergenic | 40.0% | |
| AATTGAGGTTGTCTTTCCGA+AGG | - | chr3.4:58587683-58587702 | MS.gene04485:CDS | 40.0% | |
| ACACAACAGCTACCAATACA+AGG | - | chr3.4:58586029-58586048 | MS.gene04485:intron | 40.0% | |
| ACTCCAACAAAAGGAGCAAA+AGG | + | chr3.4:58587507-58587526 | None:intergenic | 40.0% | |
| ACTTGGTTGGAATGTATGCA+TGG | - | chr3.4:58587609-58587628 | MS.gene04485:CDS | 40.0% | |
| ATATTGGGGCTCAAATGAAG+AGG | - | chr3.4:58587133-58587152 | MS.gene04485:CDS | 40.0% | |
| ATGAAGAAACACCTTGTGCT+GGG | - | chr3.4:58586791-58586810 | MS.gene04485:CDS | 40.0% | |
| CATGGTCAGTCAATGTTGTT+GGG | - | chr3.4:58587534-58587553 | MS.gene04485:CDS | 40.0% | |
| CCGAAACCATACTTGTGAAA+TGG | - | chr3.4:58585950-58585969 | MS.gene04485:intron | 40.0% | |
| CGCGAATCAAATACTCTGAT+TGG | - | chr3.4:58586405-58586424 | MS.gene04485:CDS | 40.0% | |
| CTAAAATATCGTGCTTTCCC+TGG | + | chr3.4:58587102-58587121 | None:intergenic | 40.0% | |
| CTTGACCTCTAGATATGCAT+GGG | + | chr3.4:58588955-58588974 | None:intergenic | 40.0% | |
| GAGTCGCTCAAAGAATTTGT+TGG | - | chr3.4:58586963-58586982 | MS.gene04485:CDS | 40.0% | |
| GATCATGCTTGGAACTCTTA+AGG | + | chr3.4:58585986-58586005 | None:intergenic | 40.0% | |
| GCAGTTCACCCAAAAAAGAA+TGG | - | chr3.4:58586320-58586339 | MS.gene04485:CDS | 40.0% | |
| GCATGTTTCAACAGATTGGA+GGG | - | chr3.4:58588227-58588246 | MS.gene04485:CDS | 40.0% | |
| GCCATAATCACTGATCAAGA+CGG | - | chr3.4:58587645-58587664 | MS.gene04485:CDS | 40.0% | |
| GGAGGAAAGATATAAAGAGG+AGG | - | chr3.4:58588465-58588484 | MS.gene04485:intron | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | - | chr3.4:58587228-58587247 | MS.gene04485:CDS | 40.0% | |
| GGTAAGCAGAAACAGAGTTA+TGG | + | chr3.4:58586510-58586529 | None:intergenic | 40.0% | |
| GGTGGAGGAAAGATATAAAG+AGG | - | chr3.4:58588462-58588481 | MS.gene04485:intron | 40.0% | |
| GTGTTGTGCAAGAATACTCA+CGG | - | chr3.4:58586190-58586209 | MS.gene04485:intron | 40.0% | |
| TAGGATCAAGAATGGTAGCT+TGG | + | chr3.4:58588709-58588728 | None:intergenic | 40.0% | |
| TCAAGACGGAGCAATGAAAA+AGG | - | chr3.4:58587659-58587678 | MS.gene04485:CDS | 40.0% | |
| TCATGGTCAGTCAATGTTGT+TGG | - | chr3.4:58587533-58587552 | MS.gene04485:CDS | 40.0% | |
| TCCGTCTTGATCAGTGATTA+TGG | + | chr3.4:58587649-58587668 | None:intergenic | 40.0% | |
| TCTTGACCTCTAGATATGCA+TGG | + | chr3.4:58588956-58588975 | None:intergenic | 40.0% | |
| TGAATTGGACAATGCATCTC+AGG | - | chr3.4:58585647-58585666 | MS.gene04485:CDS | 40.0% | |
| TGCATGTTTCAACAGATTGG+AGG | - | chr3.4:58588226-58588245 | MS.gene04485:CDS | 40.0% | |
| TGTGAGTATAGTGAGAAGCA+AGG | - | chr3.4:58585902-58585921 | MS.gene04485:intron | 40.0% | |
| TTACAGGAATTATGCTCAGC+GGG | - | chr3.4:58586849-58586868 | MS.gene04485:CDS | 40.0% | |
| TTGCTTCAGTGTTGTCTTTG+AGG | + | chr3.4:58588018-58588037 | None:intergenic | 40.0% | |
| TTGGGTTCCTGCATATGTAA+GGG | - | chr3.4:58587920-58587939 | MS.gene04485:CDS | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | - | chr3.4:58587557-58587576 | MS.gene04485:CDS | 40.0% | |
| TTTCAACAGATTGGAGGGTT+TGG | - | chr3.4:58588232-58588251 | MS.gene04485:CDS | 40.0% | |
| TTTGTGTGCTTAAGCTCACA+GGG | - | chr3.4:58588402-58588421 | MS.gene04485:intron | 40.0% | |
| ! | AAACAGCTTTAACCCTCCTT+TGG | + | chr3.4:58585848-58585867 | None:intergenic | 40.0% |
| ! | ACAACATTGACTGACCATGA+TGG | + | chr3.4:58587533-58587552 | None:intergenic | 40.0% |
| ! | AGAAATTTTCGGTCCTTGGT+CGG | - | chr3.4:58587195-58587214 | MS.gene04485:CDS | 40.0% |
| ! | AGCCAGTTTAGGATCAAGAA+TGG | + | chr3.4:58588717-58588736 | None:intergenic | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | - | chr3.4:58587501-58587520 | MS.gene04485:CDS | 40.0% |
| ! | ATTGGTAGCTGTTGTGTAGT+TGG | + | chr3.4:58586026-58586045 | None:intergenic | 40.0% |
| ! | GAGTAGAAATTTTCGGTCCT+TGG | - | chr3.4:58587191-58587210 | MS.gene04485:CDS | 40.0% |
| ! | GAGTGTCTACCAAACTTTTC+TGG | + | chr3.4:58587750-58587769 | None:intergenic | 40.0% |
| ! | GATGTCATTTGGATCTGAGA+AGG | - | chr3.4:58586813-58586832 | MS.gene04485:CDS | 40.0% |
| ! | TACAGATCTCAACTTGGTGA+TGG | - | chr3.4:58588995-58589014 | MS.gene04485:intron | 40.0% |
| !! | AGGAAAGAGTATCTGATTCG+CGG | + | chr3.4:58586365-58586384 | None:intergenic | 40.0% |
| !! | CTAAACTGGCTCGAAGTAAA+GGG | - | chr3.4:58588726-58588745 | MS.gene04485:intron | 40.0% |
| !! | GCTTTAGGGCTATGAATCAA+TGG | + | chr3.4:58586543-58586562 | None:intergenic | 40.0% |
| !! | TCTCAACTTGGTGATGGAAT+TGG | - | chr3.4:58589001-58589020 | MS.gene04485:intron | 40.0% |
| !!! | ATTATATTTTGGCACGGTGG+AGG | - | chr3.4:58588447-58588466 | MS.gene04485:intron | 40.0% |
| !!! | CGTGGGTTTCCATTCTTTTT+TGG | + | chr3.4:58586332-58586351 | None:intergenic | 40.0% |
| AACCCTCCTTTGGTCATTCT+TGG | + | chr3.4:58585838-58585857 | None:intergenic | 45.0% | |
| AGCAGAAACAGAGTTATGGG+AGG | + | chr3.4:58586506-58586525 | None:intergenic | 45.0% | |
| AGCAGGAGCAGAACAATGTA+TGG | - | chr3.4:58589212-58589231 | MS.gene04485:CDS | 45.0% | |
| ATACGAGACCAGATTCACAG+AGG | + | chr3.4:58586479-58586498 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGCCAGTTT+AGG | + | chr3.4:58588728-58588747 | None:intergenic | 45.0% | |
| CTGTGAGCTTAAGCACACAA+AGG | + | chr3.4:58588403-58588422 | None:intergenic | 45.0% | |
| CTTTGTGTGCTTAAGCTCAC+AGG | - | chr3.4:58588401-58588420 | MS.gene04485:intron | 45.0% | |
| GATGAAGAAACACCTTGTGC+TGG | - | chr3.4:58586790-58586809 | MS.gene04485:CDS | 45.0% | |
| GCAGGCTCCTTATTATTCTG+AGG | - | chr3.4:58589437-58589456 | MS.gene04485:CDS | 45.0% | |
| GGAATGAGGAAACAATTCGC+AGG | + | chr3.4:58586385-58586404 | None:intergenic | 45.0% | |
| GTGCGTTACAGATCTCAACT+TGG | - | chr3.4:58588989-58589008 | MS.gene04485:intron | 45.0% | |
| GTTGGGTTCCTGCATATGTA+AGG | - | chr3.4:58587919-58587938 | MS.gene04485:CDS | 45.0% | |
| TGCCAAGAATGACCAAAGGA+GGG | - | chr3.4:58585833-58585852 | MS.gene04485:CDS | 45.0% | |
| TTGCCAAGAATGACCAAAGG+AGG | - | chr3.4:58585832-58585851 | MS.gene04485:CDS | 45.0% | |
| ! | GAAGTCTTCCTTTTCGAAGG+AGG | + | chr3.4:58588755-58588774 | None:intergenic | 45.0% |
| ! | GTATTTGATTCGCGGGAATG+AGG | + | chr3.4:58586399-58586418 | None:intergenic | 45.0% |
| !! | CCTAAACTGGCTCGAAGTAA+AGG | - | chr3.4:58588725-58588744 | MS.gene04485:intron | 45.0% |
| !! | GGAAAGAGTATCTGATTCGC+GGG | + | chr3.4:58586364-58586383 | None:intergenic | 45.0% |
| ACGTCTTGCCTCTGTGAATC+TGG | - | chr3.4:58586468-58586487 | MS.gene04485:CDS | 50.0% | |
| AGGAATTATGCTCAGCGGGT+AGG | - | chr3.4:58586853-58586872 | MS.gene04485:CDS | 50.0% | |
| CCAAATGACATCCCAGCACA+AGG | + | chr3.4:58586805-58586824 | None:intergenic | 50.0% | |
| CCTTGGTCGGTGAAGCTAAT+GGG | - | chr3.4:58587208-58587227 | MS.gene04485:CDS | 50.0% | |
| CCTTGTGCTGGGATGTCATT+TGG | - | chr3.4:58586802-58586821 | MS.gene04485:CDS | 50.0% | |
| TCCTTGGTCGGTGAAGCTAA+TGG | - | chr3.4:58587207-58587226 | MS.gene04485:CDS | 50.0% | |
| TCTTTCCGAAGGCTCGTCAT+CGG | - | chr3.4:58587694-58587713 | MS.gene04485:CDS | 50.0% | |
| TTGGGGCTCAAATGAAGAGG+AGG | - | chr3.4:58587136-58587155 | MS.gene04485:CDS | 50.0% | |
| ! | AGACGATTACGACTTGGGAC+AGG | - | chr3.4:58587285-58587304 | MS.gene04485:CDS | 50.0% |
| ! | GTAAGGGACACATTTTGGGC+TGG | - | chr3.4:58587936-58587955 | MS.gene04485:CDS | 50.0% |
| ! | TATGCTCAGCGGGTAGGTTT+TGG | - | chr3.4:58586859-58586878 | MS.gene04485:CDS | 50.0% |
| CAGGGCCCATGCATATCTAG+AGG | - | chr3.4:58588947-58588966 | MS.gene04485:intron | 55.0% | |
| CTCGTCATCGGTGGTGCTTA+TGG | - | chr3.4:58587706-58587725 | MS.gene04485:CDS | 55.0% | |
| ! | CCCATTAGCTTCACCGACCA+AGG | + | chr3.4:58587211-58587230 | None:intergenic | 55.0% |
| ! | GAAAGAGAAAGTGCAGCGCG+TGG | + | chr3.4:58586237-58586256 | None:intergenic | 55.0% |
| ! | GAGTATCTGATTCGCGGGAG+TGG | + | chr3.4:58586359-58586378 | None:intergenic | 55.0% |
| !! | AAGGGCGTCCTCCTTCGAAA+AGG | - | chr3.4:58588744-58588763 | MS.gene04485:intron | 55.0% |
| ATTCGCGGGAGTGGAGAACG+TGG | + | chr3.4:58586350-58586369 | None:intergenic | 60.0% | |
| CACCACCGATGACGAGCCTT+CGG | + | chr3.4:58587702-58587721 | None:intergenic | 60.0% | |
| TTCCGAAGGCTCGTCATCGG+TGG | - | chr3.4:58587697-58587716 | MS.gene04485:CDS | 60.0% | |
| TTCGCGGGAGTGGAGAACGT+GGG | + | chr3.4:58586349-58586368 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 58585615 | 58589497 | 58585615 | ID=MS.gene04485 |
| chr3.4 | mRNA | 58585615 | 58589497 | 58585615 | ID=MS.gene04485.t1;Parent=MS.gene04485 |
| chr3.4 | exon | 58589033 | 58589497 | 58589033 | ID=MS.gene04485.t1.exon1;Parent=MS.gene04485.t1 |
| chr3.4 | CDS | 58589033 | 58589497 | 58589033 | ID=cds.MS.gene04485.t1;Parent=MS.gene04485.t1 |
| chr3.4 | exon | 58588896 | 58588944 | 58588896 | ID=MS.gene04485.t1.exon2;Parent=MS.gene04485.t1 |
| chr3.4 | CDS | 58588896 | 58588944 | 58588896 | ID=cds.MS.gene04485.t1;Parent=MS.gene04485.t1 |
| chr3.4 | exon | 58586247 | 58588390 | 58586247 | ID=MS.gene04485.t1.exon3;Parent=MS.gene04485.t1 |
| chr3.4 | CDS | 58586247 | 58588390 | 58586247 | ID=cds.MS.gene04485.t1;Parent=MS.gene04485.t1 |
| chr3.4 | exon | 58586037 | 58586162 | 58586037 | ID=MS.gene04485.t1.exon4;Parent=MS.gene04485.t1 |
| chr3.4 | CDS | 58586037 | 58586162 | 58586037 | ID=cds.MS.gene04485.t1;Parent=MS.gene04485.t1 |
| chr3.4 | exon | 58585803 | 58585895 | 58585803 | ID=MS.gene04485.t1.exon5;Parent=MS.gene04485.t1 |
| chr3.4 | CDS | 58585803 | 58585895 | 58585803 | ID=cds.MS.gene04485.t1;Parent=MS.gene04485.t1 |
| chr3.4 | exon | 58585615 | 58585671 | 58585615 | ID=MS.gene04485.t1.exon6;Parent=MS.gene04485.t1 |
| chr3.4 | CDS | 58585615 | 58585671 | 58585615 | ID=cds.MS.gene04485.t1;Parent=MS.gene04485.t1 |
| Gene Sequence |
| Protein sequence |
