AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044947

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044947.t1 MTR_7g024670 91.420 338 22 4 1 335 40 373 0.0 553
MS.gene044947.t1 MTR_4g022370 40.132 304 154 9 9 308 55 334 8.00e-50 170
MS.gene044947.t1 MTR_4g063780 41.600 250 99 10 16 252 55 270 1.49e-40 145
MS.gene044947.t1 MTR_7g059400 37.736 318 152 11 13 323 53 331 1.79e-40 145
MS.gene044947.t1 MTR_2g096740 41.176 238 70 10 16 235 41 226 1.53e-39 141
MS.gene044947.t1 MTR_2g096740 41.176 238 70 10 16 235 26 211 1.56e-39 141
MS.gene044947.t1 MTR_8g479350 77.778 63 14 0 39 101 69 131 1.18e-31 121
MS.gene044947.t1 MTR_8g068210 56.044 91 30 1 12 102 16 96 2.21e-30 118
MS.gene044947.t1 MTR_8g079060 59.551 89 29 2 40 122 31 118 3.22e-30 115
MS.gene044947.t1 MTR_4g088580 74.194 62 16 0 39 100 56 117 9.46e-30 117
MS.gene044947.t1 MTR_3g091820 57.609 92 34 1 1 92 11 97 3.72e-29 114
MS.gene044947.t1 MTR_8g015840 66.667 75 24 1 20 93 1 75 3.93e-29 112
MS.gene044947.t1 MTR_2g014060 56.311 103 37 2 23 118 11 112 4.18e-29 114
MS.gene044947.t1 MTR_3g077750 59.091 88 31 2 1 88 29 111 8.72e-29 114
MS.gene044947.t1 MTR_5g031440 88.000 50 6 0 39 88 44 93 1.35e-28 113
MS.gene044947.t1 MTR_4g109980 86.538 52 7 0 37 88 39 90 1.60e-28 112
MS.gene044947.t1 MTR_3g090430 47.414 116 50 2 37 152 50 154 2.12e-28 112
MS.gene044947.t1 MTR_4g461080 83.333 54 9 0 37 90 28 81 3.91e-28 110
MS.gene044947.t1 MTR_8g027295 72.464 69 14 1 40 103 26 94 1.25e-27 109
MS.gene044947.t1 MTR_1g077600 60.274 73 29 0 22 94 27 99 1.89e-27 108
MS.gene044947.t1 MTR_1g077600 60.274 73 29 0 22 94 27 99 2.22e-27 108
MS.gene044947.t1 MTR_2g093220 78.571 56 12 0 37 92 39 94 4.68e-27 108
MS.gene044947.t1 MTR_2g059540 88.000 50 6 0 37 86 30 79 8.29e-27 105
MS.gene044947.t1 MTR_2g014170 86.000 50 7 0 37 86 44 93 1.52e-26 107
MS.gene044947.t1 MTR_1g056810 79.245 53 11 0 40 92 14 66 3.94e-26 105
MS.gene044947.t1 MTR_2g013370 58.333 84 30 2 12 95 23 101 5.85e-26 104
MS.gene044947.t1 MTR_4g089095 78.571 56 10 1 40 95 52 105 1.67e-25 104
MS.gene044947.t1 MTR_4g089095 78.571 56 10 1 40 95 18 71 2.29e-25 103
MS.gene044947.t1 MTR_6g012450 76.471 51 12 0 40 90 138 188 1.37e-23 101
MS.gene044947.t1 MTR_2g016030 76.000 50 12 0 40 89 49 98 1.74e-23 95.1
MS.gene044947.t1 MTR_7g010950 74.510 51 13 0 40 90 137 187 7.78e-23 99.4
MS.gene044947.t1 MTR_4g082060 56.962 79 23 2 40 118 124 191 8.50e-23 99.0
MS.gene044947.t1 MTR_8g044220 69.811 53 16 0 40 92 120 172 1.13e-22 98.6
MS.gene044947.t1 MTR_3g435480 67.213 61 16 1 40 100 138 194 1.73e-22 98.2
MS.gene044947.t1 MTR_6g027450 71.154 52 15 0 39 90 90 141 6.36e-22 94.7
MS.gene044947.t1 MTR_5g041420 49.412 85 41 1 6 90 108 190 7.87e-22 94.4
MS.gene044947.t1 MTR_7g086780 67.241 58 18 1 39 96 100 156 8.35e-22 95.9
MS.gene044947.t1 MTR_5g041530 68.966 58 17 1 40 97 142 198 1.52e-21 94.7
MS.gene044947.t1 MTR_5g041380 45.000 120 51 4 40 153 129 239 3.16e-21 93.6
MS.gene044947.t1 MTR_6g027460 67.308 52 17 0 39 90 97 148 3.65e-21 93.2
MS.gene044947.t1 MTR_5g041400 43.548 124 47 4 40 153 121 231 9.39e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044947.t1 AT3G55370 37.000 300 128 13 4 286 46 301 5.37e-38 139
MS.gene044947.t1 AT3G55370 40.086 232 98 8 4 235 46 236 6.66e-37 135
MS.gene044947.t1 AT3G55370 40.086 232 98 8 4 235 91 281 7.74e-37 136
MS.gene044947.t1 AT2G37590 73.418 79 19 1 16 94 69 145 2.79e-35 131
MS.gene044947.t1 AT1G07640 71.951 82 21 1 14 95 55 134 9.39e-35 129
MS.gene044947.t1 AT1G07640 74.026 77 18 1 19 95 4 78 1.05e-34 128
MS.gene044947.t1 AT1G07640 71.951 82 21 1 14 95 63 142 1.14e-34 129
MS.gene044947.t1 AT5G02460 71.429 77 20 1 16 92 75 149 4.96e-33 126
MS.gene044947.t1 AT2G28810 35.099 302 129 8 22 311 62 308 9.61e-33 124
MS.gene044947.t1 AT2G28810 35.099 302 129 8 22 311 79 325 1.22e-32 124
MS.gene044947.t1 AT1G51700 79.032 62 13 0 39 100 34 95 4.28e-31 116
MS.gene044947.t1 AT5G60200 58.889 90 31 2 37 122 54 141 2.03e-30 116
MS.gene044947.t1 AT5G65590 80.328 61 12 0 39 99 42 102 2.09e-30 117
MS.gene044947.t1 AT5G60850 56.250 96 35 2 25 113 35 130 3.50e-30 117
MS.gene044947.t1 AT2G28510 80.952 63 10 1 37 99 47 107 4.20e-30 116
MS.gene044947.t1 AT1G21340 56.322 87 37 1 10 95 9 95 4.89e-30 115
MS.gene044947.t1 AT5G66940 52.294 109 45 2 40 141 34 142 7.11e-30 114
MS.gene044947.t1 AT3G21270 83.929 56 9 0 39 94 30 85 1.55e-29 112
MS.gene044947.t1 AT3G45610 51.961 102 38 2 1 102 11 101 7.90e-29 112
MS.gene044947.t1 AT5G62940 88.235 51 6 0 38 88 73 123 2.59e-28 113
MS.gene044947.t1 AT4G38000 71.212 66 19 0 39 104 42 107 9.12e-28 108
MS.gene044947.t1 AT3G50410 75.439 57 14 0 40 96 32 88 2.06e-27 108
MS.gene044947.t1 AT1G28310 75.439 57 14 0 39 95 28 84 3.59e-27 108
MS.gene044947.t1 AT1G28310 75.439 57 14 0 39 95 52 108 5.57e-27 108
MS.gene044947.t1 AT3G52440 70.769 65 18 1 34 98 21 84 5.68e-27 107
MS.gene044947.t1 AT3G52440 70.769 65 18 1 34 98 40 103 7.75e-27 107
MS.gene044947.t1 AT3G61850 62.857 70 26 0 40 109 64 133 1.29e-25 104
MS.gene044947.t1 AT3G61850 62.857 70 26 0 40 109 64 133 1.29e-25 104
MS.gene044947.t1 AT4G00940 57.333 75 32 0 18 92 48 122 1.36e-25 104
MS.gene044947.t1 AT4G00940 57.333 75 32 0 18 92 48 122 1.36e-25 104
MS.gene044947.t1 AT4G00940 57.333 75 32 0 18 92 48 122 1.36e-25 104
MS.gene044947.t1 AT3G61850 62.857 70 26 0 40 109 76 145 1.44e-25 104
MS.gene044947.t1 AT4G21050 64.706 68 23 1 37 104 23 89 1.61e-25 102
MS.gene044947.t1 AT3G61850 62.857 70 26 0 40 109 64 133 1.75e-25 104
MS.gene044947.t1 AT3G61850 62.857 70 26 0 40 109 76 145 1.95e-25 104
MS.gene044947.t1 AT4G24060 75.000 56 14 0 37 92 52 107 3.54e-25 104
MS.gene044947.t1 AT1G47655 75.000 52 13 0 35 86 26 77 1.74e-23 96.7
MS.gene044947.t1 AT2G46590 84.783 46 7 0 40 85 70 115 3.01e-23 99.0
MS.gene044947.t1 AT2G46590 84.783 46 7 0 40 85 82 127 3.38e-23 99.0
MS.gene044947.t1 AT1G64620 57.895 76 29 1 12 87 26 98 3.45e-23 99.0
MS.gene044947.t1 AT3G47500 74.510 51 13 0 40 90 112 162 4.07e-23 99.8
MS.gene044947.t1 AT1G29160 75.472 53 12 1 40 92 64 115 4.91e-23 94.4
MS.gene044947.t1 AT2G34140 75.472 53 12 1 40 92 60 111 5.67e-23 94.4
MS.gene044947.t1 AT1G69570 74.510 51 13 0 40 90 134 184 1.39e-22 97.8
MS.gene044947.t1 AT5G39660 55.000 80 25 2 40 119 140 208 2.11e-22 97.8
MS.gene044947.t1 AT5G39660 55.000 80 25 2 40 119 140 208 2.11e-22 97.8
MS.gene044947.t1 AT5G39660 55.000 80 25 2 40 119 140 208 2.11e-22 97.8
MS.gene044947.t1 AT5G62430 54.167 72 32 1 19 90 36 106 2.31e-22 95.5
MS.gene044947.t1 AT4G21040 51.064 94 35 2 40 133 27 109 7.39e-22 92.8
MS.gene044947.t1 AT1G26790 70.588 51 15 0 40 90 113 163 1.22e-21 94.7
MS.gene044947.t1 AT4G21080 61.538 65 23 1 40 104 27 89 9.30e-21 90.1
MS.gene044947.t1 AT4G21030 51.667 60 29 0 40 99 23 82 2.83e-14 70.9

Find 72 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAACTTGTCGTCGTTAT+TGG 0.174969 7.1:+73115569 MS.gene044947:CDS
GAAATAGTAATGATCTATTT+TGG 0.191335 7.1:+73116274 MS.gene044947:CDS
CAAATTGGATTATTTCAATT+TGG 0.211059 7.1:+73116090 MS.gene044947:CDS
AGTAATTTGCAACCACAAAT+TGG 0.232158 7.1:+73116075 MS.gene044947:CDS
GCAAATTCTTCTTCTAATAA+TGG 0.247534 7.1:+73115754 MS.gene044947:CDS
GTGCTGCTGCAGCATCATTC+TGG 0.303371 7.1:-73115465 None:intergenic
TGATGAACTTGTAGCGAATT+CGG 0.333842 7.1:-73116024 None:intergenic
GACCGAAACAAATTTCTTTG+TGG 0.341322 7.1:-73116132 None:intergenic
TGAGGGCATTGGTTCTTTGT+TGG 0.348674 7.1:+73115876 MS.gene044947:CDS
CAATTTGGTGGAGAAAATAA+TGG 0.350809 7.1:+73116105 MS.gene044947:CDS
TGGAGATGATCGTTATGATT+AGG 0.351307 7.1:-73115691 None:intergenic
CTTGGTAGTGGTTCTTCAAT+TGG 0.353175 7.1:+73115943 MS.gene044947:CDS
CAGGTCGGTGCCGGTGCTGC+TGG 0.390469 7.1:+73115712 MS.gene044947:CDS
AATTGAAATAATCCAATTTG+TGG 0.391831 7.1:-73116087 None:intergenic
CTGTTGGAGGTGGTTGTAGA+AGG 0.393447 7.1:+73115620 MS.gene044947:CDS
AGCCACAAAGAAATTTGTTT+CGG 0.401716 7.1:+73116130 MS.gene044947:CDS
CATTGTTCACCAATGCCATT+TGG 0.402281 7.1:-73115994 None:intergenic
GTGTTTGTTGATTCACATCT+TGG 0.421696 7.1:-73115496 None:intergenic
AAGAAATTTGTTTCGGTCGA+AGG 0.427281 7.1:+73116137 MS.gene044947:CDS
ATTGGATTATTTCAATTTGG+TGG 0.443223 7.1:+73116093 MS.gene044947:CDS
TATTCTTCAAGTGTTAGTAT+TGG 0.447776 7.1:+73116165 MS.gene044947:CDS
CAGCAGCACCGGCACCGACC+TGG 0.456075 7.1:-73115711 None:intergenic
AACCAAAAGCACTAGATTTG+AGG 0.456139 7.1:-73116372 None:intergenic
TCAAGTTAATACAGTTAAAG+TGG 0.456282 7.1:+73116197 MS.gene044947:CDS
GGTTGCAAATTACTCAAGAA+AGG 0.462145 7.1:-73116066 None:intergenic
GTTACAAATGGAAATTGTGT+TGG 0.468460 7.1:-73115817 None:intergenic
CTTCTACAACCACCTCCAAC+AGG 0.475660 7.1:-73115619 None:intergenic
CGAAACGTTCCTGTTGGAGG+TGG 0.475928 7.1:+73115610 MS.gene044947:CDS
TCTTCAATTGGTAATGGTAA+TGG 0.476358 7.1:+73115955 MS.gene044947:CDS
CGATGTAAAGAGGTTACAAA+TGG 0.480214 7.1:-73115829 None:intergenic
AGTGGTTCTTCAATTGGTAA+TGG 0.485640 7.1:+73115949 MS.gene044947:CDS
GCTCGATCGGTCATTGATAC+TGG 0.489149 7.1:-73115424 None:intergenic
CTTCGAAACGTTCCTGTTGG+AGG 0.496892 7.1:+73115607 MS.gene044947:CDS
GTTGAGTTTCAACTTGGTAG+TGG 0.507591 7.1:+73115931 MS.gene044947:CDS
ATACTGGTCTTCTAGACCCT+TGG 0.510341 7.1:-73115408 None:intergenic
AGTTATGTTTCTGAGGGCAT+TGG 0.510514 7.1:+73115865 MS.gene044947:CDS
GTTGCAAATTACTCAAGAAA+GGG 0.514735 7.1:-73116065 None:intergenic
GGAAATTGTGTTGGAAAATG+AGG 0.514769 7.1:-73115808 None:intergenic
GATCATCTCCAGGTCGGTGC+CGG 0.519214 7.1:+73115703 MS.gene044947:CDS
GGCTCTTTGTTGATACCAAA+TGG 0.520108 7.1:+73115979 MS.gene044947:CDS
CGACAATAGTTATGTTTCTG+AGG 0.521037 7.1:+73115858 MS.gene044947:CDS
GACAATAGTTATGTTTCTGA+GGG 0.522293 7.1:+73115859 MS.gene044947:CDS
TATCAATGACCGATCGAGCT+AGG 0.522837 7.1:+73115428 MS.gene044947:CDS
CTGGTGGTTCTAGCTCAGCA+AGG 0.527734 7.1:+73115731 MS.gene044947:CDS
GAAGCTGATGGCAGCTACCA+AGG 0.530104 7.1:+73115391 MS.gene044947:CDS
GCTAGAACCACCAGCAGCAC+CGG 0.537679 7.1:-73115722 None:intergenic
GCACTTCGAAACGTTCCTGT+TGG 0.543248 7.1:+73115604 MS.gene044947:CDS
ACTTTAACTGTATTAACTTG+AGG 0.543542 7.1:-73116195 None:intergenic
ACTAATTCTAATGTGAATGT+TGG 0.552195 7.1:+73115781 MS.gene044947:CDS
CAAGGTGGTGAAGTGAAACT+AGG 0.554007 7.1:-73116345 None:intergenic
CACTAGATTTGAGGATCACA+AGG 0.554201 7.1:-73116363 None:intergenic
GTGGAAGAAAACAATCATCA+AGG 0.560168 7.1:+73116216 MS.gene044947:CDS
GTCGCTATGACGATGTAAAG+AGG 0.562338 7.1:-73115839 None:intergenic
TAATCATAACGATCATCTCC+AGG 0.573464 7.1:+73115693 MS.gene044947:CDS
GTCGGTGCCGGTGCTGCTGG+TGG 0.577708 7.1:+73115715 MS.gene044947:CDS
GTAGCTGCCATCAGCTTCAA+CGG 0.578179 7.1:-73115386 None:intergenic
TCAATTGGTAATGGTAATGG+TGG 0.579040 7.1:+73115958 MS.gene044947:CDS
TCGTTATGATTAGGTTTCAG+AGG 0.584218 7.1:-73115682 None:intergenic
CGTCGTTATTGGACTAGAGG+TGG 0.585783 7.1:+73115580 MS.gene044947:CDS
TCTGTCACCGTTGAAGCTGA+TGG 0.588932 7.1:+73115379 MS.gene044947:CDS
ACTAATGTTGAGTTTCAACT+TGG 0.589155 7.1:+73115925 MS.gene044947:CDS
AAGCTGATGGCAGCTACCAA+GGG 0.593247 7.1:+73115392 MS.gene044947:CDS
CAAATGGCATTGGTGAACAA+TGG 0.594140 7.1:+73115995 MS.gene044947:CDS
TGTCGTCGTTATTGGACTAG+AGG 0.602398 7.1:+73115577 MS.gene044947:CDS
CTTTGACATCCTAGCTCGAT+CGG 0.607460 7.1:-73115437 None:intergenic
ATGGCATTGGTGAACAATGG+AGG 0.607659 7.1:+73115998 MS.gene044947:CDS
AATGGAAATGGAAATGGAAG+TGG 0.608244 7.1:+73116297 MS.gene044947:CDS
GAAGTGGTAATGAAAATGCA+TGG 0.613061 7.1:+73116313 MS.gene044947:CDS
TTGTTGATACCAAATGGCAT+TGG 0.626903 7.1:+73115985 MS.gene044947:CDS
TGGTGGTTCTAGCTCAGCAA+GGG 0.640666 7.1:+73115732 MS.gene044947:CDS
CATAACGATCATCTCCAGGT+CGG 0.682152 7.1:+73115697 MS.gene044947:CDS
TAGATTTGAGGATCACAAGG+TGG 0.736101 7.1:-73116360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAATAATCCAATTTG+TGG - chr7.1:73116090-73116109 None:intergenic 20.0%
!! CAAATTGGATTATTTCAATT+TGG + chr7.1:73116090-73116109 MS.gene044947:CDS 20.0%
!!! GAAATAGTAATGATCTATTT+TGG + chr7.1:73116274-73116293 MS.gene044947:CDS 20.0%
! ACTAATTCTAATGTGAATGT+TGG + chr7.1:73115781-73115800 MS.gene044947:CDS 25.0%
! ATTGGATTATTTCAATTTGG+TGG + chr7.1:73116093-73116112 MS.gene044947:CDS 25.0%
! GCAAATTCTTCTTCTAATAA+TGG + chr7.1:73115754-73115773 MS.gene044947:CDS 25.0%
! TATTCTTCAAGTGTTAGTAT+TGG + chr7.1:73116165-73116184 MS.gene044947:CDS 25.0%
! TCAAGTTAATACAGTTAAAG+TGG + chr7.1:73116197-73116216 MS.gene044947:CDS 25.0%
!! ACTTTAACTGTATTAACTTG+AGG - chr7.1:73116198-73116217 None:intergenic 25.0%
!! AGTACTATTGCTCATATTTT+TGG - chr7.1:73115902-73115921 None:intergenic 25.0%
!!! AGTAATGATCTATTTTGGAA+TGG + chr7.1:73116279-73116298 MS.gene044947:CDS 25.0%
AAAAATCTCTTGAATGGTTC+AGG + chr7.1:73116252-73116271 MS.gene044947:CDS 30.0%
ACTAATGTTGAGTTTCAACT+TGG + chr7.1:73115925-73115944 MS.gene044947:CDS 30.0%
GTTACAAATGGAAATTGTGT+TGG - chr7.1:73115820-73115839 None:intergenic 30.0%
GTTGCAAATTACTCAAGAAA+GGG - chr7.1:73116068-73116087 None:intergenic 30.0%
TTGCCAAAAAATCTCTTGAA+TGG + chr7.1:73116246-73116265 MS.gene044947:CDS 30.0%
! AGCCACAAAGAAATTTGTTT+CGG + chr7.1:73116130-73116149 MS.gene044947:CDS 30.0%
! AGTAATTTGCAACCACAAAT+TGG + chr7.1:73116075-73116094 MS.gene044947:CDS 30.0%
! CAATTTGGTGGAGAAAATAA+TGG + chr7.1:73116105-73116124 MS.gene044947:CDS 30.0%
! GACAATAGTTATGTTTCTGA+GGG + chr7.1:73115859-73115878 MS.gene044947:CDS 30.0%
!! TCTTCAATTGGTAATGGTAA+TGG + chr7.1:73115955-73115974 MS.gene044947:CDS 30.0%
!!! GAACCATTCAAGAGATTTTT+TGG - chr7.1:73116252-73116271 None:intergenic 30.0%
!!! GATCTATTTTGGAATGGAAA+TGG + chr7.1:73116285-73116304 MS.gene044947:CDS 30.0%
!!! TTTTGGAATGGAAATGGAAA+TGG + chr7.1:73116291-73116310 MS.gene044947:CDS 30.0%
AATGGAAATGGAAATGGAAG+TGG + chr7.1:73116297-73116316 MS.gene044947:CDS 35.0%
AGTGGTTCTTCAATTGGTAA+TGG + chr7.1:73115949-73115968 MS.gene044947:CDS 35.0%
CGATGTAAAGAGGTTACAAA+TGG - chr7.1:73115832-73115851 None:intergenic 35.0%
GACCGAAACAAATTTCTTTG+TGG - chr7.1:73116135-73116154 None:intergenic 35.0%
GGAAATTGTGTTGGAAAATG+AGG - chr7.1:73115811-73115830 None:intergenic 35.0%
GGTTGCAAATTACTCAAGAA+AGG - chr7.1:73116069-73116088 None:intergenic 35.0%
GTGGAAGAAAACAATCATCA+AGG + chr7.1:73116216-73116235 MS.gene044947:CDS 35.0%
TAATCATAACGATCATCTCC+AGG + chr7.1:73115693-73115712 MS.gene044947:CDS 35.0%
TCGTTATGATTAGGTTTCAG+AGG - chr7.1:73115685-73115704 None:intergenic 35.0%
TGATGAACTTGTAGCGAATT+CGG - chr7.1:73116027-73116046 None:intergenic 35.0%
TGGAGATGATCGTTATGATT+AGG - chr7.1:73115694-73115713 None:intergenic 35.0%
TTGTTGATACCAAATGGCAT+TGG + chr7.1:73115985-73116004 MS.gene044947:CDS 35.0%
! AAGAAATTTGTTTCGGTCGA+AGG + chr7.1:73116137-73116156 MS.gene044947:CDS 35.0%
! CGACAATAGTTATGTTTCTG+AGG + chr7.1:73115858-73115877 MS.gene044947:CDS 35.0%
! GAAGTGGTAATGAAAATGCA+TGG + chr7.1:73116313-73116332 MS.gene044947:CDS 35.0%
! GACGACAAGTTTTGCAAAAA+TGG - chr7.1:73115564-73115583 None:intergenic 35.0%
!! GTGTTTGTTGATTCACATCT+TGG - chr7.1:73115499-73115518 None:intergenic 35.0%
!! TCAATTGGTAATGGTAATGG+TGG + chr7.1:73115958-73115977 MS.gene044947:CDS 35.0%
CATTGTTCACCAATGCCATT+TGG - chr7.1:73115997-73116016 None:intergenic 40.0%
GCAAAACTTGTCGTCGTTAT+TGG + chr7.1:73115569-73115588 MS.gene044947:CDS 40.0%
GGCTCTTTGTTGATACCAAA+TGG + chr7.1:73115979-73115998 MS.gene044947:CDS 40.0%
GTTGAGTTTCAACTTGGTAG+TGG + chr7.1:73115931-73115950 MS.gene044947:CDS 40.0%
TAGATTTGAGGATCACAAGG+TGG - chr7.1:73116363-73116382 None:intergenic 40.0%
! AGTTATGTTTCTGAGGGCAT+TGG + chr7.1:73115865-73115884 MS.gene044947:CDS 40.0%
! CAAGTTTTGCAAAAATGGCG+TGG - chr7.1:73115559-73115578 None:intergenic 40.0%
!! CAAATGGCATTGGTGAACAA+TGG + chr7.1:73115995-73116014 MS.gene044947:CDS 40.0%
!! CTTGGTAGTGGTTCTTCAAT+TGG + chr7.1:73115943-73115962 MS.gene044947:CDS 40.0%
CAAGGTGGTGAAGTGAAACT+AGG - chr7.1:73116348-73116367 None:intergenic 45.0%
CATAACGATCATCTCCAGGT+CGG + chr7.1:73115697-73115716 MS.gene044947:CDS 45.0%
CTTTGACATCCTAGCTCGAT+CGG - chr7.1:73115440-73115459 None:intergenic 45.0%
GTCGCTATGACGATGTAAAG+AGG - chr7.1:73115842-73115861 None:intergenic 45.0%
TATCAATGACCGATCGAGCT+AGG + chr7.1:73115428-73115447 MS.gene044947:CDS 45.0%
! TGTCGTCGTTATTGGACTAG+AGG + chr7.1:73115577-73115596 MS.gene044947:CDS 45.0%
!! ATACTGGTCTTCTAGACCCT+TGG - chr7.1:73115411-73115430 None:intergenic 45.0%
!! ATGGCATTGGTGAACAATGG+AGG + chr7.1:73115998-73116017 MS.gene044947:CDS 45.0%
!! TGAGGGCATTGGTTCTTTGT+TGG + chr7.1:73115876-73115895 MS.gene044947:CDS 45.0%
AAGCTGATGGCAGCTACCAA+GGG + chr7.1:73115392-73115411 MS.gene044947:CDS 50.0%
CTGTTGGAGGTGGTTGTAGA+AGG + chr7.1:73115620-73115639 MS.gene044947:CDS 50.0%
CTTCGAAACGTTCCTGTTGG+AGG + chr7.1:73115607-73115626 MS.gene044947:CDS 50.0%
CTTCTACAACCACCTCCAAC+AGG - chr7.1:73115622-73115641 None:intergenic 50.0%
GCACTTCGAAACGTTCCTGT+TGG + chr7.1:73115604-73115623 MS.gene044947:CDS 50.0%
GCTCGATCGGTCATTGATAC+TGG - chr7.1:73115427-73115446 None:intergenic 50.0%
GTAGCTGCCATCAGCTTCAA+CGG - chr7.1:73115389-73115408 None:intergenic 50.0%
TCTGTCACCGTTGAAGCTGA+TGG + chr7.1:73115379-73115398 MS.gene044947:CDS 50.0%
! CGTCGTTATTGGACTAGAGG+TGG + chr7.1:73115580-73115599 MS.gene044947:CDS 50.0%
!! TGGTGGTTCTAGCTCAGCAA+GGG + chr7.1:73115732-73115751 MS.gene044947:CDS 50.0%
CGAAACGTTCCTGTTGGAGG+TGG + chr7.1:73115610-73115629 MS.gene044947:CDS 55.0%
GAAGCTGATGGCAGCTACCA+AGG + chr7.1:73115391-73115410 MS.gene044947:CDS 55.0%
! GTGCTGCTGCAGCATCATTC+TGG - chr7.1:73115468-73115487 None:intergenic 55.0%
!! CTGGTGGTTCTAGCTCAGCA+AGG + chr7.1:73115731-73115750 MS.gene044947:CDS 55.0%
GATCATCTCCAGGTCGGTGC+CGG + chr7.1:73115703-73115722 MS.gene044947:CDS 60.0%
GCTAGAACCACCAGCAGCAC+CGG - chr7.1:73115725-73115744 None:intergenic 60.0%
!! CAGCAGCACCGGCACCGACC+TGG - chr7.1:73115714-73115733 None:intergenic 75.0%
!! CAGGTCGGTGCCGGTGCTGC+TGG + chr7.1:73115712-73115731 MS.gene044947:CDS 75.0%
!! GTCGGTGCCGGTGCTGCTGG+TGG + chr7.1:73115715-73115734 MS.gene044947:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 73115376 73116383 73115376 ID=MS.gene044947
chr7.1 mRNA 73115376 73116383 73115376 ID=MS.gene044947.t1;Parent=MS.gene044947
chr7.1 exon 73115376 73116383 73115376 ID=MS.gene044947.t1.exon1;Parent=MS.gene044947.t1
chr7.1 CDS 73115376 73116383 73115376 ID=cds.MS.gene044947.t1;Parent=MS.gene044947.t1
Gene Sequence

>MS.gene044947

ATGTCTGTCACCGTTGAAGCTGATGGCAGCTACCAAGGGTCTAGAAGACCAGTATCAATGACCGATCGAGCTAGGATGTCAAAGATACACCAGAATGATGCTGCAGCAGCACAGAAATGTCCAAGATGTGAATCAACAAACACAAAGTTCTGTTACTACAACAACTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGTGGTGCACTTCGAAACGTTCCTGTTGGAGGTGGTTGTAGAAGGAACAACAAAAGAAGAAAAAGTAATTCAGCATCAAAATCACCTCTGAAACCTAATCATAACGATCATCTCCAGGTCGGTGCCGGTGCTGCTGGTGGTTCTAGCTCAGCAAGGGCAAATTCTTCTTCTAATAATGGTTGCACTAATTCTAATGTGAATGTTGGAATGCCTCATTTTCCAACACAATTTCCATTTGTAACCTCTTTACATCGTCATAGCGACAATAGTTATGTTTCTGAGGGCATTGGTTCTTTGTTGGCCAAAAATATGAGCAATAGTACTACAACTAATGTTGAGTTTCAACTTGGTAGTGGTTCTTCAATTGGTAATGGTAATGGTGGCTCTTTGTTGATACCAAATGGCATTGGTGAACAATGGAGGTTTCCGAATTCGCTACAAGTTCATCAACGACAATATCAACAATTCCCTTTCTTGAGTAATTTGCAACCACAAATTGGATTATTTCAATTTGGTGGAGAAAATAATGGAGAGCCACAAAGAAATTTGTTTCGGTCGAAGGAAACATATTCTTCAAGTGTTAGTATTGGAATGATGCCTCAAGTTAATACAGTTAAAGTGGAAGAAAACAATCATCAAGGTTTGAGTTTGCCAAAAAATCTCTTGAATGGTTCAGGAAATAGTAATGATCTATTTTGGAATGGAAATGGAAATGGAAGTGGTAATGAAAATGCATGGAATGAAGTTCCTAGTTTCACTTCACCACCTTGTGATCCTCAAATCTAG
Protein sequence

>MS.gene044947.t1

MSVTVEADGSYQGSRRPVSMTDRARMSKIHQNDAAAAQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRRKSNSASKSPLKPNHNDHLQVGAGAAGGSSSARANSSSNNGCTNSNVNVGMPHFPTQFPFVTSLHRHSDNSYVSEGIGSLLAKNMSNSTTTNVEFQLGSGSSIGNGNGGSLLIPNGIGEQWRFPNSLQVHQRQYQQFPFLSNLQPQIGLFQFGGENNGEPQRNLFRSKETYSSSVSIGMMPQVNTVKVEENNHQGLSLPKNLLNGSGNSNDLFWNGNGNGSGNENAWNEVPSFTSPPCDPQI