AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045053

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045053.t1 MTR_7g011120 75.391 256 23 4 1 217 56 310 1.22e-133 378
MS.gene045053.t1 MTR_7g011130 67.832 286 23 6 1 217 67 352 3.71e-126 360
MS.gene045053.t1 MTR_3g070030 56.507 292 46 3 1 217 67 352 3.09e-102 300
MS.gene045053.t1 MTR_3g070040 57.401 277 40 4 13 217 65 335 3.08e-99 291
MS.gene045053.t1 MTR_6g012670 44.569 267 83 6 2 217 69 321 9.48e-63 198
MS.gene045053.t1 MTR_4g108760 59.172 169 55 4 2 169 66 221 3.76e-57 185
MS.gene045053.t1 MTR_3g435150 60.265 151 50 2 2 152 65 205 5.24e-55 177
MS.gene045053.t1 MTR_2g078700 52.660 188 61 5 2 169 72 251 1.17e-51 171
MS.gene045053.t1 MTR_6g084430 62.791 129 37 3 2 130 54 171 6.01e-48 160
MS.gene045053.t1 MTR_7g085260 52.747 182 70 7 2 176 66 238 1.04e-47 161
MS.gene045053.t1 MTR_6g032770 58.125 160 52 6 2 157 67 215 1.99e-47 160
MS.gene045053.t1 MTR_3g109340 62.393 117 32 2 2 116 71 177 2.04e-43 149
MS.gene045053.t1 MTR_3g109340 62.393 117 31 2 2 116 71 176 5.26e-43 148
MS.gene045053.t1 MTR_1g008740 61.157 121 35 2 2 120 63 173 1.67e-42 146
MS.gene045053.t1 MTR_1g008740 61.157 121 35 2 2 120 77 187 2.33e-42 146
MS.gene045053.t1 MTR_3g116070 69.792 96 27 1 1 94 72 167 8.98e-41 142
MS.gene045053.t1 MTR_5g012080 54.762 126 41 4 1 120 55 170 2.07e-37 133
MS.gene045053.t1 MTR_8g024480 55.738 122 47 3 2 118 64 183 3.27e-37 134
MS.gene045053.t1 MTR_4g101680 55.556 117 32 3 1 111 55 157 9.08e-37 132
MS.gene045053.t1 MTR_4g036030 58.491 106 33 1 6 111 63 157 9.29e-37 131
MS.gene045053.t1 MTR_8g076110 40.230 174 80 5 8 181 64 213 2.30e-36 130
MS.gene045053.t1 MTR_5g041940 46.667 135 55 3 4 136 54 173 2.67e-35 125
MS.gene045053.t1 MTR_4g035590 52.482 141 47 5 2 138 57 181 2.84e-35 128
MS.gene045053.t1 MTR_5g021710 58.491 106 33 2 6 111 64 158 3.07e-35 127
MS.gene045053.t1 MTR_0036s0150 37.561 205 101 5 3 191 58 251 2.22e-34 128
MS.gene045053.t1 MTR_3g093050 39.474 190 89 5 1 179 72 246 2.25e-34 129
MS.gene045053.t1 MTR_3g093050 40.541 185 84 5 6 179 77 246 2.42e-34 129
MS.gene045053.t1 MTR_2g062730 54.054 111 39 2 6 115 66 165 2.76e-34 125
MS.gene045053.t1 MTR_3g093040 50.820 122 44 2 1 115 158 270 3.14e-34 124
MS.gene045053.t1 MTR_2g064470 54.128 109 42 2 2 110 58 158 6.20e-34 123
MS.gene045053.t1 MTR_8g094580 52.033 123 49 4 1 121 1 115 7.32e-34 121
MS.gene045053.t1 MTR_8g059170 51.304 115 49 2 2 116 63 170 7.56e-34 123
MS.gene045053.t1 MTR_4g081870 49.153 118 51 2 2 117 58 168 8.11e-34 122
MS.gene045053.t1 MTR_5g069030 50.427 117 42 2 6 115 80 187 1.39e-33 127
MS.gene045053.t1 MTR_8g094580 52.033 123 49 4 1 121 55 169 2.28e-33 121
MS.gene045053.t1 MTR_1g096430 52.174 115 35 3 2 110 56 156 2.59e-33 122
MS.gene045053.t1 MTR_8g063550 42.857 126 62 2 5 130 60 175 4.19e-33 122
MS.gene045053.t1 MTR_8g063550 42.857 126 62 2 5 130 60 175 7.88e-33 123
MS.gene045053.t1 MTR_8g063550 42.857 126 62 2 5 130 60 175 1.09e-32 122
MS.gene045053.t1 MTR_1g069805 48.387 124 46 3 1 122 58 165 5.18e-32 117
MS.gene045053.t1 MTR_2g079990 47.826 115 51 1 2 116 65 170 7.35e-32 119
MS.gene045053.t1 MTR_4g098630 41.011 178 90 5 6 180 61 226 7.43e-32 118
MS.gene045053.t1 MTR_2g080010 48.739 119 51 3 2 113 64 179 9.95e-32 118
MS.gene045053.t1 MTR_7g100990 54.054 111 44 3 2 110 60 165 1.13e-31 118
MS.gene045053.t1 MTR_3g088110 49.153 118 49 3 1 116 55 163 1.43e-31 117
MS.gene045053.t1 MTR_4g089135 46.457 127 52 3 2 112 64 190 1.71e-31 117
MS.gene045053.t1 MTR_3g096140 43.077 130 64 3 1 130 57 176 1.79e-31 116
MS.gene045053.t1 MTR_7g085220 46.721 122 51 2 2 114 57 173 3.07e-31 117
MS.gene045053.t1 MTR_1g090723 41.139 158 82 2 3 160 61 207 4.01e-31 119
MS.gene045053.t1 MTR_3g096140 43.077 130 64 3 1 130 36 155 4.31e-31 116
MS.gene045053.t1 MTR_1g090723 41.139 158 82 2 3 160 61 207 4.67e-31 119
MS.gene045053.t1 MTR_3g096140 43.077 130 64 3 1 130 57 176 5.78e-31 116
MS.gene045053.t1 MTR_1g090723 41.139 158 83 2 3 160 61 208 8.84e-31 119
MS.gene045053.t1 MTR_5g040420 38.743 191 92 6 1 180 62 238 1.14e-30 116
MS.gene045053.t1 MTR_8g093580 40.476 126 65 2 5 130 60 175 1.36e-30 117
MS.gene045053.t1 MTR_2157s0010 37.824 193 94 7 2 175 57 242 1.38e-30 113
MS.gene045053.t1 MTR_6g477900 53.333 105 40 1 6 110 61 156 1.59e-30 112
MS.gene045053.t1 MTR_8g467490 47.414 116 55 3 1 112 62 175 3.24e-30 115
MS.gene045053.t1 MTR_5g014300 37.755 196 89 6 6 180 61 244 4.69e-30 114
MS.gene045053.t1 MTR_1g097300 45.082 122 55 3 3 123 71 181 9.32e-30 115
MS.gene045053.t1 MTR_6g011860 47.826 115 55 3 1 112 63 175 1.16e-29 114
MS.gene045053.t1 MTR_3g096920 47.967 123 51 3 1 120 55 167 1.63e-29 111
MS.gene045053.t1 MTR_2g064090 62.651 83 27 1 6 84 61 143 2.27e-29 112
MS.gene045053.t1 MTR_2g079990 62.338 77 29 0 2 78 65 141 5.79e-29 111
MS.gene045053.t1 MTR_7g097090 49.091 110 41 2 1 108 58 154 6.00e-29 110
MS.gene045053.t1 MTR_7g005280 49.558 113 44 3 6 116 65 166 7.34e-29 108
MS.gene045053.t1 MTR_3g064580 50.476 105 44 1 6 110 61 157 7.50e-29 113
MS.gene045053.t1 MTR_5g076850 64.865 74 26 0 6 79 61 134 1.15e-28 113
MS.gene045053.t1 MTR_2g093810 40.000 150 75 3 4 151 65 201 3.27e-27 106
MS.gene045053.t1 MTR_3g096920 62.821 78 28 1 1 78 55 131 3.57e-27 106
MS.gene045053.t1 MTR_4g075980 56.471 85 34 1 1 82 63 147 6.50e-27 104
MS.gene045053.t1 MTR_2g068880 47.009 117 55 4 5 115 75 190 1.95e-26 103
MS.gene045053.t1 MTR_4g134460 45.946 111 48 2 1 110 102 201 2.99e-26 105
MS.gene045053.t1 MTR_2g086880 57.971 69 29 0 8 76 74 142 4.57e-26 105
MS.gene045053.t1 MTR_2g086880 57.971 69 29 0 8 76 74 142 5.69e-26 105
MS.gene045053.t1 MTR_2g068920 44.915 118 58 4 5 116 74 190 7.74e-26 101
MS.gene045053.t1 MTR_5g090970 42.727 110 60 1 4 110 68 177 9.83e-26 102
MS.gene045053.t1 MTR_5g090970 42.727 110 60 1 4 110 69 178 1.00e-25 102
MS.gene045053.t1 MTR_7g070140 50.000 88 39 2 6 88 17 104 5.67e-24 93.2
MS.gene045053.t1 MTR_1g090720 46.429 112 57 1 3 114 94 202 5.84e-23 96.3
MS.gene045053.t1 MTR_8g023840 56.410 78 31 3 1 76 62 138 4.72e-21 90.5
MS.gene045053.t1 MTR_8g023860 53.165 79 34 3 1 77 63 140 3.14e-20 88.2
MS.gene045053.t1 MTR_7g105170 39.167 120 65 4 2 118 58 172 3.49e-19 83.6
MS.gene045053.t1 MTR_8g099750 39.474 114 57 3 6 114 65 171 3.98e-19 82.8
MS.gene045053.t1 MTR_2g086690 52.000 75 34 2 5 77 61 135 4.59e-19 82.8
MS.gene045053.t1 MTR_3g098810 36.937 111 63 2 5 111 64 171 7.54e-19 82.0
MS.gene045053.t1 MTR_4g052620 36.522 115 69 2 1 111 58 172 5.19e-17 77.4
MS.gene045053.t1 MTR_3g098810 44.872 78 39 1 5 78 64 141 6.51e-17 75.5
MS.gene045053.t1 MTR_8g023900 29.146 199 98 8 1 171 244 427 2.07e-16 77.4
MS.gene045053.t1 MTR_8g023900 26.754 228 120 11 1 217 63 254 7.85e-15 72.8
MS.gene045053.t1 MTR_8g023930 34.783 138 71 6 1 134 75 197 3.52e-16 77.0
MS.gene045053.t1 MTR_4g094302 33.333 117 65 3 8 122 66 171 8.00e-15 70.5
MS.gene045053.t1 MTR_4g094302 41.096 73 33 2 8 78 66 130 1.01e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045053.t1 AT5G61430 64.000 150 44 2 1 150 1 140 6.54e-60 189
MS.gene045053.t1 AT5G61430 64.000 150 44 2 1 150 64 203 6.03e-59 189
MS.gene045053.t1 AT5G07680 59.091 176 53 5 2 171 52 214 1.27e-58 187
MS.gene045053.t1 AT5G07680 59.091 176 53 5 2 171 66 228 1.99e-58 187
MS.gene045053.t1 AT3G29035 51.648 182 69 3 2 171 73 247 7.61e-52 170
MS.gene045053.t1 AT5G39610 67.769 121 32 1 2 122 69 182 9.00e-52 169
MS.gene045053.t1 AT3G04060 59.184 147 51 5 1 145 68 207 4.31e-47 158
MS.gene045053.t1 AT3G18400 67.826 115 27 2 2 116 54 158 4.71e-47 157
MS.gene045053.t1 AT5G18270 71.429 112 24 4 2 112 70 174 7.87e-47 157
MS.gene045053.t1 AT5G18270 71.429 112 24 4 2 112 70 174 9.64e-47 157
MS.gene045053.t1 AT5G53950 68.468 111 26 2 2 110 66 169 1.69e-45 155
MS.gene045053.t1 AT1G76420 63.393 112 29 2 1 110 70 171 8.28e-43 147
MS.gene045053.t1 AT3G15170 49.112 169 75 3 2 168 69 228 2.38e-42 145
MS.gene045053.t1 AT2G24430 62.393 117 32 2 2 116 65 171 3.74e-42 145
MS.gene045053.t1 AT2G24430 62.393 117 32 2 2 116 65 171 3.74e-42 145
MS.gene045053.t1 AT2G46770 48.649 148 68 3 1 140 64 211 8.09e-39 137
MS.gene045053.t1 AT3G12977 52.137 117 48 1 2 118 14 122 8.78e-38 131
MS.gene045053.t1 AT3G61910 48.299 147 69 2 1 140 59 205 1.50e-37 133
MS.gene045053.t1 AT1G56010 58.182 110 40 3 1 110 1 104 1.65e-37 131
MS.gene045053.t1 AT1G12260 57.895 114 34 3 1 111 55 157 5.30e-37 132
MS.gene045053.t1 AT1G62700 57.018 114 35 3 1 111 55 157 5.59e-37 133
MS.gene045053.t1 AT1G62700 57.018 114 35 3 1 111 55 157 5.59e-37 133
MS.gene045053.t1 AT1G12260 57.018 114 35 2 1 111 55 157 5.99e-37 133
MS.gene045053.t1 AT2G18060 48.936 141 60 3 6 146 65 193 6.50e-37 132
MS.gene045053.t1 AT2G18060 48.936 141 60 3 6 146 65 193 6.50e-37 132
MS.gene045053.t1 AT3G12977 52.137 117 48 1 2 118 67 175 6.62e-37 130
MS.gene045053.t1 AT1G56010 58.182 110 40 3 1 110 68 171 1.01e-36 131
MS.gene045053.t1 AT4G10350 57.265 117 38 3 2 115 11 118 6.83e-36 128
MS.gene045053.t1 AT4G35580 47.552 143 61 3 1 140 59 190 1.14e-35 131
MS.gene045053.t1 AT4G35580 47.552 143 61 3 1 140 59 190 1.24e-35 132
MS.gene045053.t1 AT4G35580 47.552 143 61 3 1 140 59 190 1.44e-35 131
MS.gene045053.t1 AT5G62380 52.000 125 43 3 6 124 63 176 1.52e-35 128
MS.gene045053.t1 AT5G62380 52.000 125 43 3 6 124 63 176 1.52e-35 128
MS.gene045053.t1 AT4G10350 57.265 117 38 3 2 115 58 165 2.30e-35 128
MS.gene045053.t1 AT5G66300 57.009 107 36 2 6 112 68 164 4.72e-35 126
MS.gene045053.t1 AT4G36160 47.794 136 60 2 8 143 68 192 7.19e-35 127
MS.gene045053.t1 AT4G36160 47.794 136 60 2 8 143 68 192 7.19e-35 127
MS.gene045053.t1 AT4G36160 47.794 136 60 2 8 143 72 196 7.61e-35 127
MS.gene045053.t1 AT1G71930 54.464 112 37 3 2 110 58 158 2.09e-34 125
MS.gene045053.t1 AT1G71930 54.464 112 37 3 2 110 58 158 2.09e-34 125
MS.gene045053.t1 AT1G33060 52.727 110 43 1 1 110 74 174 2.45e-34 129
MS.gene045053.t1 AT1G33060 52.727 110 43 1 1 110 74 174 2.69e-34 129
MS.gene045053.t1 AT1G77450 38.389 211 95 8 1 200 58 244 9.32e-34 121
MS.gene045053.t1 AT1G32770 49.206 126 63 1 6 130 72 197 1.24e-33 124
MS.gene045053.t1 AT1G33280 53.846 117 39 3 2 115 57 161 1.50e-33 122
MS.gene045053.t1 AT3G15500 47.826 115 51 1 2 116 63 168 3.11e-33 122
MS.gene045053.t1 AT1G52890 47.826 115 51 1 2 116 63 168 4.54e-33 121
MS.gene045053.t1 AT1G69490 47.899 119 53 2 2 118 58 169 7.89e-33 119
MS.gene045053.t1 AT3G15510 47.244 127 57 3 2 121 66 189 1.07e-32 121
MS.gene045053.t1 AT4G27410 44.079 152 68 4 2 148 63 202 1.26e-32 119
MS.gene045053.t1 AT4G27410 44.079 152 68 4 2 148 80 219 1.87e-32 119
MS.gene045053.t1 AT5G04410 51.351 111 45 1 6 116 64 165 2.26e-32 123
MS.gene045053.t1 AT5G39820 36.898 187 93 3 1 173 68 243 2.35e-32 120
MS.gene045053.t1 AT3G10500 50.450 111 46 1 6 116 64 165 3.65e-32 122
MS.gene045053.t1 AT5G46590 38.073 218 110 7 6 211 61 265 3.79e-32 118
MS.gene045053.t1 AT3G49530 37.569 181 94 4 1 180 63 225 6.73e-32 120
MS.gene045053.t1 AT5G63790 50.000 116 53 2 1 116 108 218 8.85e-32 118
MS.gene045053.t1 AT5G63790 50.000 116 53 2 1 116 98 208 8.93e-32 117
MS.gene045053.t1 AT1G79580 54.630 108 36 3 6 112 73 168 9.36e-32 119
MS.gene045053.t1 AT1G79580 54.630 108 36 3 6 112 73 168 9.36e-32 119
MS.gene045053.t1 AT1G79580 54.630 108 36 3 6 112 73 168 9.36e-32 119
MS.gene045053.t1 AT1G79580 54.630 108 36 3 6 112 73 168 9.36e-32 119
MS.gene045053.t1 AT1G79580 54.630 108 36 3 6 112 73 168 9.36e-32 119
MS.gene045053.t1 AT4G28530 42.767 159 71 5 1 152 74 219 1.18e-31 118
MS.gene045053.t1 AT5G08790 49.138 116 54 2 1 116 55 165 1.34e-31 117
MS.gene045053.t1 AT3G49530 37.569 181 94 4 1 180 63 225 1.52e-31 120
MS.gene045053.t1 AT5G46590 64.198 81 28 1 6 85 61 141 1.88e-31 116
MS.gene045053.t1 AT5G24590 38.095 168 91 3 1 164 63 221 2.56e-31 119
MS.gene045053.t1 AT3G10480 52.632 114 41 2 3 114 79 181 3.00e-31 119
MS.gene045053.t1 AT1G61110 49.558 113 53 2 2 110 65 177 3.50e-31 116
MS.gene045053.t1 AT3G04070 47.445 137 59 4 2 130 59 190 4.79e-31 116
MS.gene045053.t1 AT1G01720 46.552 116 56 2 1 116 55 164 4.80e-31 115
MS.gene045053.t1 AT3G10480 52.174 115 41 2 3 114 79 182 1.05e-30 117
MS.gene045053.t1 AT3G10480 52.174 115 41 2 3 114 112 215 3.38e-30 117
MS.gene045053.t1 AT3G10490 52.212 113 44 2 3 114 79 182 3.70e-30 112
MS.gene045053.t1 AT5G22290 56.410 78 34 0 6 83 75 152 7.86e-30 113
MS.gene045053.t1 AT1G65910 47.059 119 52 2 6 123 61 169 7.94e-30 116
MS.gene045053.t1 AT2G27300 58.667 75 31 0 6 80 68 142 9.77e-30 113
MS.gene045053.t1 AT3G10490 52.212 113 44 2 3 114 79 182 1.56e-29 114
MS.gene045053.t1 AT2G33480 49.541 109 40 2 6 111 8 104 1.98e-29 109
MS.gene045053.t1 AT3G04070 42.953 149 64 4 2 130 59 206 2.25e-29 112
MS.gene045053.t1 AT3G17730 64.865 74 26 0 6 79 61 134 2.62e-29 110
MS.gene045053.t1 AT2G33480 49.541 109 40 2 6 111 65 161 1.14e-28 108
MS.gene045053.t1 AT5G13180 47.788 113 47 3 6 116 64 166 1.24e-28 108
MS.gene045053.t1 AT3G03200 52.830 106 40 2 6 110 61 157 1.46e-28 112
MS.gene045053.t1 AT1G26870 47.368 114 58 1 1 112 64 177 2.71e-28 110
MS.gene045053.t1 AT2G33480 50.000 106 42 2 6 111 65 159 3.27e-28 107
MS.gene045053.t1 AT5G09330 38.281 128 69 2 3 130 58 175 5.08e-28 110
MS.gene045053.t1 AT5G09330 38.281 128 69 2 3 130 58 175 5.08e-28 110
MS.gene045053.t1 AT5G09330 38.281 128 69 2 3 130 58 175 5.08e-28 110
MS.gene045053.t1 AT5G09330 38.281 128 69 2 3 130 58 175 5.08e-28 110
MS.gene045053.t1 AT5G09330 38.281 128 69 2 3 130 58 175 5.08e-28 110
MS.gene045053.t1 AT3G44290 55.128 78 35 0 6 83 68 145 5.14e-28 106
MS.gene045053.t1 AT5G17260 51.887 106 41 2 6 110 61 157 6.43e-28 110
MS.gene045053.t1 AT4G17980 64.000 75 25 1 6 78 61 135 6.57e-28 106
MS.gene045053.t1 AT4G17980 64.000 75 25 1 6 78 61 135 1.15e-27 106
MS.gene045053.t1 AT2G02450 43.846 130 58 3 1 129 99 214 1.43e-27 108
MS.gene045053.t1 AT2G02450 42.446 139 65 3 1 138 99 223 1.58e-27 108
MS.gene045053.t1 AT3G44290 55.128 78 35 0 6 83 68 145 2.68e-27 106
MS.gene045053.t1 AT1G34190 42.276 123 61 2 1 123 66 178 3.77e-27 108
MS.gene045053.t1 AT5G64060 36.508 126 70 2 5 130 60 175 5.77e-27 105
MS.gene045053.t1 AT1G34180 41.463 123 62 2 1 123 66 178 9.76e-27 106
MS.gene045053.t1 AT1G34180 41.463 123 62 2 1 123 78 190 1.04e-26 106
MS.gene045053.t1 AT1G52880 47.826 115 55 2 2 112 66 179 1.07e-26 104
MS.gene045053.t1 AT1G32510 55.556 90 33 1 6 88 61 150 1.25e-26 103
MS.gene045053.t1 AT1G54330 51.429 105 39 1 6 110 61 153 1.33e-26 103
MS.gene045053.t1 AT1G34180 41.463 123 62 2 1 123 66 178 2.35e-26 106
MS.gene045053.t1 AT1G34180 41.463 123 62 2 1 123 78 190 2.70e-26 106
MS.gene045053.t1 AT2G43000 40.000 110 58 1 1 110 66 167 5.29e-26 102
MS.gene045053.t1 AT2G17040 52.809 89 38 2 1 85 54 142 3.20e-24 97.4
MS.gene045053.t1 AT2G18060 44.828 116 52 3 31 146 2 105 1.30e-23 95.5
MS.gene045053.t1 AT1G32870 52.941 85 38 1 1 85 60 142 1.63e-23 98.2
MS.gene045053.t1 AT1G32870 52.941 85 38 1 1 85 60 142 1.95e-23 97.8
MS.gene045053.t1 AT1G32870 52.941 85 38 1 1 85 96 178 2.05e-23 97.8
MS.gene045053.t1 AT3G10490 54.444 90 31 2 26 114 2 82 2.07e-22 93.6
MS.gene045053.t1 AT3G10490 54.444 90 31 2 26 114 2 82 2.07e-22 93.6
MS.gene045053.t1 AT3G12910 55.263 76 31 1 6 78 75 150 1.73e-21 90.5
MS.gene045053.t1 AT2G43000 37.113 97 53 1 14 110 1 89 1.52e-18 80.5
MS.gene045053.t1 AT5G22290 59.615 52 21 0 32 83 2 53 3.18e-18 80.5
MS.gene045053.t1 AT3G44350 31.325 166 98 5 8 170 65 217 7.86e-18 79.3
MS.gene045053.t1 AT5G22380 36.937 111 65 3 8 114 66 175 3.23e-17 77.8
MS.gene045053.t1 AT5G04395 46.429 84 42 1 1 81 89 172 5.03e-17 76.3
MS.gene045053.t1 AT4G01550 50.685 73 33 2 9 78 63 135 1.17e-16 78.2
MS.gene045053.t1 AT3G44350 44.318 88 43 3 8 89 65 152 1.49e-16 74.3
MS.gene045053.t1 AT4G01540 38.095 105 48 4 6 107 61 151 6.36e-16 75.9
MS.gene045053.t1 AT3G04420 45.946 74 40 0 3 76 57 130 7.04e-16 75.1
MS.gene045053.t1 AT4G01540 38.095 105 48 4 6 107 61 151 8.22e-16 75.9
MS.gene045053.t1 AT4G01540 38.095 105 48 4 6 107 61 151 8.53e-16 75.5
MS.gene045053.t1 AT4G01540 38.095 105 48 4 6 107 61 151 1.05e-15 75.5
MS.gene045053.t1 AT3G04420 45.946 74 40 0 3 76 57 130 1.35e-15 74.7
MS.gene045053.t1 AT4G01520 36.190 105 50 4 6 107 61 151 7.12e-15 72.4
MS.gene045053.t1 AT4G28530 67.442 43 14 0 1 43 74 116 3.44e-13 67.8
MS.gene045053.t1 AT1G02220 40.541 74 41 1 3 76 57 127 4.50e-12 64.7
MS.gene045053.t1 AT1G02230 33.784 148 70 7 1 145 55 177 7.04e-12 63.9
MS.gene045053.t1 AT1G01010 37.113 97 39 4 9 95 63 147 6.89e-11 61.2

Find 55 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGGGAAATTCATTAAT+TGG 0.105364 7.2:-86231024 MS.gene045053:CDS
GCGTAATTGTGGAAAGAAAA+TGG 0.290534 7.2:-86230321 MS.gene045053:CDS
TTGCAGCCAATGATAGCTTT+TGG 0.296269 7.2:-86229856 MS.gene045053:CDS
TTATTCAGTGATGGCTAAAA+TGG 0.298330 7.2:-86231163 None:intergenic
GATATCTCATCTGTGGTATA+TGG 0.312060 7.2:-86229938 MS.gene045053:CDS
ATCTCTATTGTCTCCATTGT+TGG 0.314151 7.2:-86230240 MS.gene045053:CDS
ACAAGGGAAATTCATTAATT+GGG 0.364746 7.2:-86231023 MS.gene045053:CDS
ATCGGTTGTGCTCAGGAAAA+AGG 0.384221 7.2:+86230893 None:intergenic
GAGCTACTAATGCTGGCTAT+TGG 0.387868 7.2:-86231074 MS.gene045053:CDS
GCCAGCATTAGTAGCTCTAT+TGG 0.388516 7.2:+86231080 None:intergenic
TATTGGTCCTTTGACCAGTT+GGG 0.417126 7.2:+86231097 None:intergenic
GATTTGTCACCAGCTTCTAC+TGG 0.426239 7.2:-86229881 MS.gene045053:CDS
ACATGTTTCAAAGGTGGTCT+AGG 0.435057 7.2:-86229910 MS.gene045053:CDS
CTATTGGTCCTTTGACCAGT+TGG 0.441493 7.2:+86231096 None:intergenic
AAAATGGATGGGTCAAAACT+TGG 0.452019 7.2:-86230305 MS.gene045053:CDS
CAGCATCAGCATCAAAGTCT+TGG 0.452771 7.2:+86229960 None:intergenic
GAAATTCCAAAAGCTATCAT+TGG 0.459053 7.2:+86229850 None:intergenic
CCCGACCATTGAGGCTTGGT+TGG 0.462880 7.2:+86230006 None:intergenic
GCTGGCTATTGGAAAGCAAC+AGG 0.467708 7.2:-86231063 MS.gene045053:CDS
AGAGATGCAATAGTATTTGA+AGG 0.471599 7.2:+86230257 None:intergenic
AGCATCAGCATCAAAGTCTT+GGG 0.482978 7.2:+86229961 None:intergenic
CCAACCAAGCCTCAATGGTC+GGG 0.487670 7.2:-86230006 MS.gene045053:CDS
ACCAATAGAGCTACTAATGC+TGG 0.495849 7.2:-86231081 MS.gene045053:CDS
TGATTCCAACCAAGCCTCAA+TGG 0.514118 7.2:-86230011 MS.gene045053:CDS
AATTCCCGACCATTGAGGCT+TGG 0.520068 7.2:+86230002 None:intergenic
TATTCAGTGATGGCTAAAAT+GGG 0.532188 7.2:-86231162 None:intergenic
AGGGACAGAAAATACCCAAC+TGG 0.538414 7.2:-86231111 MS.gene045053:CDS
AATTGTGGAAAGAAAATGGA+TGG 0.538683 7.2:-86230317 MS.gene045053:CDS
TCCAACCAAGCCTCAATGGT+CGG 0.540014 7.2:-86230007 MS.gene045053:CDS
CAACCGATCCACACATGGAA+TGG 0.549333 7.2:-86230878 MS.gene045053:intron
TGTGTGGATCGGTTGTGCTC+AGG 0.549723 7.2:+86230886 None:intergenic
GTCTTTGAGAAGCGTAATTG+TGG 0.550437 7.2:-86230332 MS.gene045053:CDS
TTACCATTCCATGTGTGGAT+CGG 0.563735 7.2:+86230875 None:intergenic
AGGTCTAACTCCTCTAGAGA+TGG 0.566136 7.2:-86230281 MS.gene045053:CDS
GTATTCATGCATGACCCAGT+TGG 0.566311 7.2:+86230948 None:intergenic
ATGGAAATGACATGTTTCAA+AGG 0.567928 7.2:-86229919 MS.gene045053:CDS
CAAAGACAAAGAGATTTACA+AGG 0.568333 7.2:-86231040 MS.gene045053:CDS
CAATATTACCATTCCATGTG+TGG 0.569497 7.2:+86230870 None:intergenic
GCTGCAAGTCCAGTAGAAGC+TGG 0.583251 7.2:+86229872 None:intergenic
AGAGTGAGTTACCCTCCAAT+CGG 0.585613 7.2:+86230926 None:intergenic
GGTCATGCATGAATACCGAT+TGG 0.588791 7.2:-86230941 MS.gene045053:CDS
CATGCATGAATACCGATTGG+AGG 0.592763 7.2:-86230938 MS.gene045053:CDS
CTAAAATGGGAGAAACAGAA+TGG 0.594315 7.2:-86231149 MS.gene045053:CDS
TGATGAATTCCCGACCATTG+AGG 0.595523 7.2:+86229997 None:intergenic
GAAAATACCCAACTGGTCAA+AGG 0.598845 7.2:-86231104 MS.gene045053:CDS
TGGATGGGTCAAAACTTGGA+AGG 0.614869 7.2:-86230301 MS.gene045053:CDS
ATGCATGAATACCGATTGGA+GGG 0.621001 7.2:-86230937 MS.gene045053:CDS
GAAATGACATGTTTCAAAGG+TGG 0.623013 7.2:-86229916 MS.gene045053:CDS
ATTTGAAGGTCCATCTCTAG+AGG 0.623412 7.2:+86230271 None:intergenic
TATGGAGAATAATCCAACAA+TGG 0.629197 7.2:+86230227 None:intergenic
GAGCACAACCGATCCACACA+TGG 0.630980 7.2:-86230883 MS.gene045053:CDS
ATTGTGGAAAGAAAATGGAT+GGG 0.648110 7.2:-86230316 MS.gene045053:CDS
AAAGACAAAGAGATTTACAA+GGG 0.662925 7.2:-86231039 MS.gene045053:CDS
TGATGCTGATATCTCATCTG+TGG 0.664657 7.2:-86229945 MS.gene045053:CDS
TACATAGGAAGAGCTCCAAG+AGG 0.736988 7.2:-86230979 MS.gene045053:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTGATTTTTTGATAA+AGG + chr7.2:86230449-86230468 None:intergenic 10.0%
!!! AAAAATTCTTTTCAAAATCA+CGG + chr7.2:86230269-86230288 None:intergenic 15.0%
!!! AGTTTACTTTATTTAGAAAA+AGG + chr7.2:86230395-86230414 None:intergenic 15.0%
!! AGGTTACACATAATATTAAA+TGG + chr7.2:86230618-86230637 None:intergenic 20.0%
!!! ATAAATTTTAGAGAAACTAC+TGG - chr7.2:86230473-86230492 MS.gene045053:intron 20.0%
! AAAGACAAAGAGATTTACAA+GGG - chr7.2:86229961-86229980 MS.gene045053:CDS 25.0%
! AACAGATCTTAGTAATTGTT+TGG + chr7.2:86230346-86230365 None:intergenic 25.0%
! ACAAGGGAAATTCATTAATT+GGG - chr7.2:86229977-86229996 MS.gene045053:CDS 25.0%
! ACGTAATTATATCAAACACA+TGG + chr7.2:86230239-86230258 None:intergenic 25.0%
! ATGATTTCTACTTTGACTAT+AGG - chr7.2:86230183-86230202 MS.gene045053:intron 25.0%
! ATTAGAGAAATCAGAAATAG+TGG + chr7.2:86230816-86230835 None:intergenic 25.0%
! GATAAAGGTTACATTTATCA+TGG + chr7.2:86230434-86230453 None:intergenic 25.0%
! TACAAGGGAAATTCATTAAT+TGG - chr7.2:86229976-86229995 MS.gene045053:CDS 25.0%
!!! AATATCCATTTGTTTTGAAG+AGG + chr7.2:86230943-86230962 None:intergenic 25.0%
!!! GTTTGATTTTCACTATTGTA+TGG + chr7.2:86230794-86230813 None:intergenic 25.0%
AATTGGGATGAAAAAAACAC+TGG - chr7.2:86229993-86230012 MS.gene045053:CDS 30.0%
AATTGTGGAAAGAAAATGGA+TGG - chr7.2:86230683-86230702 MS.gene045053:intron 30.0%
AGAGATGCAATAGTATTTGA+AGG + chr7.2:86230746-86230765 None:intergenic 30.0%
ATGGAAATGACATGTTTCAA+AGG - chr7.2:86231081-86231100 MS.gene045053:CDS 30.0%
ATTGTGGAAAGAAAATGGAT+GGG - chr7.2:86230684-86230703 MS.gene045053:intron 30.0%
CAAAGACAAAGAGATTTACA+AGG - chr7.2:86229960-86229979 MS.gene045053:CDS 30.0%
GAAATTCCAAAAGCTATCAT+TGG + chr7.2:86231153-86231172 None:intergenic 30.0%
TATGGAGAATAATCCAACAA+TGG + chr7.2:86230776-86230795 None:intergenic 30.0%
TTCATCCTCTTCAAAACAAA+TGG - chr7.2:86230935-86230954 MS.gene045053:CDS 30.0%
! TTTGGTTTCTCTGTTTGATT+TGG + chr7.2:86230860-86230879 None:intergenic 30.0%
!! TTTCTCTGTTTGATTTGGAT+TGG + chr7.2:86230855-86230874 None:intergenic 30.0%
!!! AAAACACTGGTTTTCTACAT+AGG - chr7.2:86230006-86230025 MS.gene045053:CDS 30.0%
!!! AACCTTTTTTGTAGAGTGAA+TGG - chr7.2:86230633-86230652 MS.gene045053:intron 30.0%
!!! AATGGTATTTTTTCTGTGTG+AGG - chr7.2:86229869-86229888 MS.gene045053:CDS 30.0%
!!! ACCTTTTTTGTAGAGTGAAT+GGG - chr7.2:86230634-86230653 MS.gene045053:intron 30.0%
!!! ATGGTATTTTTTCTGTGTGA+GGG - chr7.2:86229870-86229889 MS.gene045053:CDS 30.0%
AAAATGGATGGGTCAAAACT+TGG - chr7.2:86230695-86230714 MS.gene045053:intron 35.0%
AAGAGGTGAAAAATCCAACT+GGG - chr7.2:86230038-86230057 MS.gene045053:intron 35.0%
ACCCATTCACTCTACAAAAA+AGG + chr7.2:86230638-86230657 None:intergenic 35.0%
ATCTCTATTGTCTCCATTGT+TGG - chr7.2:86230760-86230779 MS.gene045053:intron 35.0%
CAATATTACCATTCCATGTG+TGG + chr7.2:86230133-86230152 None:intergenic 35.0%
CTAAAATGGGAGAAACAGAA+TGG - chr7.2:86229851-86229870 MS.gene045053:CDS 35.0%
GAAATGACATGTTTCAAAGG+TGG - chr7.2:86231084-86231103 MS.gene045053:CDS 35.0%
GATATCTCATCTGTGGTATA+TGG - chr7.2:86231062-86231081 MS.gene045053:CDS 35.0%
GCGTAATTGTGGAAAGAAAA+TGG - chr7.2:86230679-86230698 MS.gene045053:intron 35.0%
! ATGTTGTCATCTCGTGTTTT+TGG + chr7.2:86230878-86230897 None:intergenic 35.0%
! CAATTGTTGCTTCAGCTAAA+GGG + chr7.2:86230968-86230987 None:intergenic 35.0%
ACATGTTTCAAAGGTGGTCT+AGG - chr7.2:86231090-86231109 MS.gene045053:CDS 40.0%
ACCAATAGAGCTACTAATGC+TGG - chr7.2:86229919-86229938 MS.gene045053:CDS 40.0%
AGCATCAGCATCAAAGTCTT+GGG + chr7.2:86231042-86231061 None:intergenic 40.0%
ATTTGAAGGTCCATCTCTAG+AGG + chr7.2:86230732-86230751 None:intergenic 40.0%
CAAGAGGTGAAAAATCCAAC+TGG - chr7.2:86230037-86230056 MS.gene045053:intron 40.0%
GAAAATACCCAACTGGTCAA+AGG - chr7.2:86229896-86229915 MS.gene045053:CDS 40.0%
TATTGGTCCTTTGACCAGTT+GGG + chr7.2:86229906-86229925 None:intergenic 40.0%
TGATGCTGATATCTCATCTG+TGG - chr7.2:86231055-86231074 MS.gene045053:CDS 40.0%
TTACCATTCCATGTGTGGAT+CGG + chr7.2:86230128-86230147 None:intergenic 40.0%
! ATGCATGAATACCGATTGGA+GGG - chr7.2:86230063-86230082 MS.gene045053:intron 40.0%
! CAGTTGGATTTTTCACCTCT+TGG + chr7.2:86230039-86230058 None:intergenic 40.0%
! GCAATTGTTGCTTCAGCTAA+AGG + chr7.2:86230969-86230988 None:intergenic 40.0%
! GTCTTTGAGAAGCGTAATTG+TGG - chr7.2:86230668-86230687 MS.gene045053:intron 40.0%
! TTGCAGCCAATGATAGCTTT+TGG - chr7.2:86231144-86231163 MS.gene045053:CDS 40.0%
AGAGTGAGTTACCCTCCAAT+CGG + chr7.2:86230077-86230096 None:intergenic 45.0%
AGGGACAGAAAATACCCAAC+TGG - chr7.2:86229889-86229908 MS.gene045053:CDS 45.0%
ATCGGTTGTGCTCAGGAAAA+AGG + chr7.2:86230110-86230129 None:intergenic 45.0%
CAGCATCAGCATCAAAGTCT+TGG + chr7.2:86231043-86231062 None:intergenic 45.0%
CTATTGGTCCTTTGACCAGT+TGG + chr7.2:86229907-86229926 None:intergenic 45.0%
GATTTGTCACCAGCTTCTAC+TGG - chr7.2:86231119-86231138 MS.gene045053:CDS 45.0%
GGTCATGCATGAATACCGAT+TGG - chr7.2:86230059-86230078 MS.gene045053:intron 45.0%
GTATTCATGCATGACCCAGT+TGG + chr7.2:86230055-86230074 None:intergenic 45.0%
TACATAGGAAGAGCTCCAAG+AGG - chr7.2:86230021-86230040 MS.gene045053:CDS 45.0%
TGATGAATTCCCGACCATTG+AGG + chr7.2:86231006-86231025 None:intergenic 45.0%
TGATTCCAACCAAGCCTCAA+TGG - chr7.2:86230989-86231008 MS.gene045053:CDS 45.0%
TGGATGGGTCAAAACTTGGA+AGG - chr7.2:86230699-86230718 MS.gene045053:intron 45.0%
! AGGTCTAACTCCTCTAGAGA+TGG - chr7.2:86230719-86230738 MS.gene045053:intron 45.0%
! CATGCATGAATACCGATTGG+AGG - chr7.2:86230062-86230081 MS.gene045053:intron 45.0%
! GAGCTACTAATGCTGGCTAT+TGG - chr7.2:86229926-86229945 MS.gene045053:CDS 45.0%
! GCCAGCATTAGTAGCTCTAT+TGG + chr7.2:86229923-86229942 None:intergenic 45.0%
AATTCCCGACCATTGAGGCT+TGG + chr7.2:86231001-86231020 None:intergenic 50.0%
CAACCGATCCACACATGGAA+TGG - chr7.2:86230122-86230141 MS.gene045053:intron 50.0%
GCTGGCTATTGGAAAGCAAC+AGG - chr7.2:86229937-86229956 MS.gene045053:CDS 50.0%
TCCAACCAAGCCTCAATGGT+CGG - chr7.2:86230993-86231012 MS.gene045053:CDS 50.0%
CCAACCAAGCCTCAATGGTC+GGG - chr7.2:86230994-86231013 MS.gene045053:CDS 55.0%
GAGCACAACCGATCCACACA+TGG - chr7.2:86230117-86230136 MS.gene045053:intron 55.0%
GCTGCAAGTCCAGTAGAAGC+TGG + chr7.2:86231131-86231150 None:intergenic 55.0%
TGTGTGGATCGGTTGTGCTC+AGG + chr7.2:86230117-86230136 None:intergenic 55.0%
! CCCGACCATTGAGGCTTGGT+TGG + chr7.2:86230997-86231016 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 86229847 86231175 86229847 ID=MS.gene045053
chr7.2 mRNA 86229847 86231175 86229847 ID=MS.gene045053.t1;Parent=MS.gene045053
chr7.2 exon 86230879 86231175 86230879 ID=MS.gene045053.t1.exon1;Parent=MS.gene045053.t1
chr7.2 CDS 86230879 86231175 86230879 ID=cds.MS.gene045053.t1;Parent=MS.gene045053.t1
chr7.2 exon 86230222 86230375 86230222 ID=MS.gene045053.t1.exon2;Parent=MS.gene045053.t1
chr7.2 CDS 86230222 86230375 86230222 ID=cds.MS.gene045053.t1;Parent=MS.gene045053.t1
chr7.2 exon 86229847 86230049 86229847 ID=MS.gene045053.t1.exon3;Parent=MS.gene045053.t1
chr7.2 CDS 86229847 86230049 86229847 ID=cds.MS.gene045053.t1;Parent=MS.gene045053.t1
Gene Sequence

>MS.gene045053

ATGGCTAAAATGGGAGAAACAGAATGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACCAATAGAGCTACTAATGCTGGCTATTGGAAAGCAACAGGCAAAGACAAAGAGATTTACAAGGGAAATTCATTAATTGGGATGAAAAAAACACTGGTTTTCTACATAGGAAGAGCTCCAAGAGGTGAAAAATCCAACTGGGTCATGCATGAATACCGATTGGAGGGTAACTCACTCTCTAAGCACAACCTTTTTCCTGAGCACAACCGATCCACACATGGAATGGTAATATTGCTATATGTTTTTATTACTTTGTTTTTGTCAATGATTTCTACTTTGACTATAGGTGAAAATTTATTAGTGTATGTTCACATCGACCATGTGTTTGATATAATTACGTTATATTACCGTGATTTTGAAAAGAATTTTTTTTTTAAAATTTTAACAAAGTTAGCATTTTATCATCGTCAAACTTATCGTCGATCCAAACAATTACTAAGATCTGTTTGTAACAAATTATAAAAATTTAATTTCCTTTTTCTAAATAAAGTAAACTATTTTATGTTTGATCACCATGATAAATGTAACCTTTATCAAAAAATCAATTATAAAATATAAATTTTAGAGAAACTACTGGAAACAACTTTTTGTTTGAAACATATATAATATTCTTTCAAATAGTATTTTATTTAAAAACATTTTAATAAATGAATGAATACTAAATAATGACAGTGTTTTTTAAATAATGTCTTTTTTCCATTTAATATTATGTGTAACCTTTTTTGTAGAGTGAATGGGTTGTCACTAGAGTCTTTGAGAAGCGTAATTGTGGAAAGAAAATGGATGGGTCAAAACTTGGAAGGTCTAACTCCTCTAGAGATGGACCTTCAAATACTATTGCATCTCTATTGTCTCCATTGTTGGATTATTCTCCATACAATAGTGAAAATCAAACCACTATTTCTGATTTCTCTAATGTGTTGAATTCATTCACCAATCCAAATCAAACAGAGAAACCAAAAACACGAGATGACAACATTGTTCATAAATAACAATGAAACTAGTATCTTGAACATTTCATCCTCTTCAAAACAAATGGATATTTACCCTTTAGCTGAAGCAACAATTGCTGATTCCAACCAAGCCTCAATGGTCGGGAATTCATCAAACTTTTTCTTCTCCCAAGACTTTGATGCTGATGCTGATATCTCATCTGTGGTATATGGAAATGACATGTTTCAAAGGTGGTCTAGGAATCAAGATTTGTCACCAGCTTCTACTGGACTTGCAGCCAATGATAGCTTTTGGAATTTCTGA
Protein sequence

>MS.gene045053.t1

MAKMGETEWYFFCVRDRKYPTGQRTNRATNAGYWKATGKDKEIYKGNSLIGMKKTLVFYIGRAPRGEKSNWVMHEYRLEGNSLSKHNLFPEHNRSTHGMSEWVVTRVFEKRNCGKKMDGSKLGRSNSSRDGPSNTIASLLSPLLDYSPYNTEATIADSNQASMVGNSSNFFFSQDFDADADISSVVYGNDMFQRWSRNQDLSPASTGLAANDSFWNF