Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045059.t1 | XP_003602071.2 | 93.7 | 239 | 11 | 1 | 1 | 239 | 1 | 235 | 8.80E-92 | 346.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045059.t1 | O80365 | 57.1 | 156 | 52 | 3 | 19 | 173 | 6 | 147 | 6.5e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045059.t1 | B7FMM2 | 93.7 | 239 | 11 | 1 | 1 | 239 | 1 | 235 | 6.3e-92 | 346.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045059.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045059.t1 | MTR_3g088630 | 95.816 | 239 | 6 | 1 | 1 | 239 | 1 | 235 | 3.69e-164 | 453 |
| MS.gene045059.t1 | MTR_8g038620 | 54.494 | 178 | 66 | 2 | 19 | 195 | 6 | 169 | 2.72e-59 | 185 |
| MS.gene045059.t1 | MTR_7g490310 | 54.706 | 170 | 58 | 5 | 22 | 186 | 9 | 164 | 2.59e-54 | 174 |
| MS.gene045059.t1 | MTR_3g015490 | 56.209 | 153 | 50 | 3 | 22 | 173 | 4 | 140 | 3.80e-51 | 164 |
| MS.gene045059.t1 | MTR_3g093860 | 53.472 | 144 | 48 | 2 | 23 | 166 | 19 | 143 | 4.06e-48 | 156 |
| MS.gene045059.t1 | MTR_5g036480 | 45.455 | 187 | 82 | 5 | 20 | 204 | 14 | 182 | 4.63e-48 | 159 |
| MS.gene045059.t1 | MTR_3g078613 | 50.649 | 154 | 53 | 3 | 21 | 173 | 22 | 153 | 1.22e-47 | 156 |
| MS.gene045059.t1 | MTR_3g078613 | 49.677 | 155 | 54 | 3 | 21 | 173 | 22 | 154 | 4.12e-47 | 155 |
| MS.gene045059.t1 | MTR_1g049100 | 53.289 | 152 | 50 | 4 | 20 | 170 | 6 | 137 | 2.26e-46 | 153 |
| MS.gene045059.t1 | MTR_4g106590 | 48.387 | 155 | 56 | 3 | 21 | 173 | 25 | 157 | 5.55e-44 | 147 |
| MS.gene045059.t1 | MTR_6g007460 | 39.269 | 219 | 57 | 4 | 19 | 183 | 8 | 204 | 1.05e-43 | 146 |
| MS.gene045059.t1 | MTR_4g051330 | 66.038 | 53 | 18 | 0 | 121 | 173 | 77 | 129 | 8.70e-19 | 80.5 |
| MS.gene045059.t1 | MTR_1g067110 | 31.034 | 116 | 79 | 1 | 99 | 213 | 131 | 246 | 7.04e-11 | 62.0 |
| MS.gene045059.t1 | MTR_1g067110 | 31.034 | 116 | 79 | 1 | 99 | 213 | 131 | 246 | 7.20e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045059.t1 | AT2G41310 | 58.170 | 153 | 49 | 3 | 22 | 173 | 9 | 147 | 4.75e-59 | 186 |
| MS.gene045059.t1 | AT3G57040 | 57.051 | 156 | 54 | 3 | 19 | 173 | 6 | 149 | 1.88e-56 | 180 |
| MS.gene045059.t1 | AT3G57040 | 57.051 | 156 | 54 | 3 | 19 | 173 | 6 | 149 | 1.88e-56 | 180 |
| MS.gene045059.t1 | AT1G59940 | 47.647 | 170 | 66 | 3 | 11 | 179 | 22 | 169 | 4.40e-49 | 161 |
| MS.gene045059.t1 | AT3G48100 | 51.592 | 157 | 54 | 3 | 22 | 177 | 25 | 160 | 1.46e-47 | 155 |
| MS.gene045059.t1 | AT1G59940 | 47.647 | 170 | 66 | 3 | 11 | 179 | 114 | 261 | 1.80e-47 | 159 |
| MS.gene045059.t1 | AT1G10470 | 50.000 | 162 | 58 | 3 | 17 | 177 | 15 | 154 | 4.28e-47 | 156 |
| MS.gene045059.t1 | AT5G62920 | 53.947 | 152 | 47 | 3 | 22 | 172 | 25 | 154 | 6.09e-47 | 154 |
| MS.gene045059.t1 | AT1G10470 | 50.000 | 162 | 58 | 3 | 17 | 177 | 29 | 168 | 6.38e-47 | 156 |
| MS.gene045059.t1 | AT3G56380 | 51.299 | 154 | 53 | 3 | 19 | 171 | 17 | 149 | 2.42e-45 | 149 |
| MS.gene045059.t1 | AT1G19050 | 50.327 | 153 | 53 | 3 | 21 | 172 | 23 | 153 | 2.89e-45 | 150 |
| MS.gene045059.t1 | AT3G56380 | 50.323 | 155 | 54 | 3 | 19 | 171 | 17 | 150 | 7.13e-45 | 147 |
| MS.gene045059.t1 | AT1G74890 | 48.718 | 156 | 57 | 3 | 21 | 175 | 17 | 150 | 2.23e-44 | 148 |
| MS.gene045059.t1 | AT2G40670 | 46.835 | 158 | 54 | 3 | 20 | 171 | 27 | 160 | 1.27e-41 | 140 |
| MS.gene045059.t1 | AT2G40670 | 45.912 | 159 | 55 | 3 | 20 | 171 | 27 | 161 | 3.03e-41 | 139 |
| MS.gene045059.t1 | AT2G07440 | 53.846 | 52 | 24 | 0 | 122 | 173 | 10 | 61 | 8.23e-15 | 69.3 |
| MS.gene045059.t1 | AT1G10470 | 36.471 | 85 | 53 | 1 | 92 | 175 | 6 | 90 | 1.20e-13 | 67.4 |
Find 46 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGCCAACCCTTTCATTT+TGG | 0.085264 | 3.2:+75169611 | None:intergenic |
| CTGCACTGCAGGGATCTTCT+TGG | 0.261594 | 3.2:-75170161 | MS.gene045059:intron |
| GATAAGGCTTTGAAATATCT+TGG | 0.316965 | 3.2:-75172658 | MS.gene045059:CDS |
| TCTGATGACATAACCACAAC+TGG | 0.369928 | 3.2:+75170129 | None:intergenic |
| AATTGATATGGAGCTTGCTT+TGG | 0.375819 | 3.2:-75172983 | None:intergenic |
| ATTGATCTCTCTGGAGGCTC+AGG | 0.433469 | 3.2:+75169636 | None:intergenic |
| GTCCGAGTCTGTGGTGGTAG+TGG | 0.436880 | 3.2:+75169740 | None:intergenic |
| ATGACAGATTATTGCATGCC+TGG | 0.445954 | 3.2:-75171385 | MS.gene045059:CDS |
| AATGAAAGGGTTGGCGGTGG+TGG | 0.458526 | 3.2:-75169607 | MS.gene045059:CDS |
| GCTAATAGGTGCTTGGAAGA+AGG | 0.458769 | 3.2:-75169876 | MS.gene045059:intron |
| CTGTGTGGACTCTGGAGATA+AGG | 0.474705 | 3.2:-75172674 | MS.gene045059:CDS |
| ACTTACATGCTAATTCTAGA+AGG | 0.476558 | 3.2:+75170099 | None:intergenic |
| ATTACCTCTTGTAGCTGCAA+TGG | 0.489838 | 3.2:+75172553 | None:intergenic |
| CTAATAGGTGCTTGGAAGAA+GGG | 0.490036 | 3.2:-75169875 | MS.gene045059:intron |
| TAATTTGGCTAATAGGTGCT+TGG | 0.497490 | 3.2:-75169883 | MS.gene045059:intron |
| ACAGTTACCTGTGTGGACTC+TGG | 0.503672 | 3.2:-75172682 | MS.gene045059:intron |
| CTCTGGAGGCTCAGGAGACA+TGG | 0.506463 | 3.2:+75169644 | None:intergenic |
| TTGGAAAGATGTTCCAGTTG+TGG | 0.523397 | 3.2:-75170142 | MS.gene045059:CDS |
| AGATCAATGCCCAAAATGAA+AGG | 0.528945 | 3.2:-75169621 | MS.gene045059:CDS |
| CTTAGAGATTCTTCATGCAA+AGG | 0.532173 | 3.2:-75172856 | MS.gene045059:intron |
| TAGATGATAGTGTCATTGAT+AGG | 0.538094 | 3.2:-75172897 | MS.gene045059:CDS |
| TTGGGCATTGATCTCTCTGG+AGG | 0.540639 | 3.2:+75169630 | None:intergenic |
| AAATCATAGCCACTCATCCC+AGG | 0.545060 | 3.2:+75171367 | None:intergenic |
| GCCCAAAATGAAAGGGTTGG+CGG | 0.559802 | 3.2:-75169613 | MS.gene045059:CDS |
| TGCAAATCTGATAACTGAAG+AGG | 0.563149 | 3.2:+75169831 | None:intergenic |
| GCAAGAACACTTTCATGTGT+TGG | 0.563382 | 3.2:-75172923 | MS.gene045059:CDS |
| TTCCACTACCACCACAGACT+CGG | 0.564431 | 3.2:-75169742 | MS.gene045059:CDS |
| GATCAATGCCCAAAATGAAA+GGG | 0.575333 | 3.2:-75169620 | MS.gene045059:CDS |
| TGACAGATTATTGCATGCCT+GGG | 0.579945 | 3.2:-75171384 | MS.gene045059:CDS |
| TGCAATGGTTGTTGAAGAGG+AGG | 0.579983 | 3.2:+75172568 | None:intergenic |
| AGCTGCAATGGTTGTTGAAG+AGG | 0.586818 | 3.2:+75172565 | None:intergenic |
| TGTGGTGGTAGTGGAACTGT+TGG | 0.587887 | 3.2:+75169749 | None:intergenic |
| ACATTAATAGTATCAGCAAA+CGG | 0.588740 | 3.2:-75169671 | MS.gene045059:CDS |
| TAATAGGTGCTTGGAAGAAG+GGG | 0.593866 | 3.2:-75169874 | MS.gene045059:intron |
| GTTGTCGTCGTCCGAGTCTG+TGG | 0.598775 | 3.2:+75169731 | None:intergenic |
| AATGCCCAAAATGAAAGGGT+TGG | 0.602173 | 3.2:-75169616 | MS.gene045059:CDS |
| TTGATAGGATGCTTCTAGAG+AGG | 0.609363 | 3.2:-75172882 | MS.gene045059:CDS |
| TAATAGTATCAGCAAACGGA+AGG | 0.609687 | 3.2:-75169667 | MS.gene045059:CDS |
| ACAACCATTGCAGCTACAAG+AGG | 0.610346 | 3.2:-75172557 | MS.gene045059:intron |
| TATTGCATGCCTGGGATGAG+TGG | 0.615464 | 3.2:-75171376 | MS.gene045059:CDS |
| CAAAATGAAAGGGTTGGCGG+TGG | 0.616336 | 3.2:-75169610 | MS.gene045059:CDS |
| TGATTTACTTAAAAGAGTCA+AGG | 0.620876 | 3.2:-75171350 | MS.gene045059:intron |
| GTCGTCGTCCGAGTCTGTGG+TGG | 0.650795 | 3.2:+75169734 | None:intergenic |
| TAATATAGAAGACTTTGTTG+AGG | 0.651761 | 3.2:+75172603 | None:intergenic |
| TGTTAAAACAGTTACCTGTG+TGG | 0.666037 | 3.2:-75172689 | MS.gene045059:intron |
| CTTATCTCCAGAGTCCACAC+AGG | 0.676893 | 3.2:+75172675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATTAACAACTTAATT+TGG | - | chr3.2:75172680-75172699 | MS.gene045059:CDS | 10.0% |
| !! | TAATATATACATGTTATATA+TGG | - | chr3.2:75170493-75170512 | MS.gene045059:intron | 10.0% |
| !!! | AACATTAAATTTTTATGTTT+GGG | - | chr3.2:75171118-75171137 | MS.gene045059:intron | 10.0% |
| !!! | AAGTATTTAAGATATAATAA+AGG | + | chr3.2:75172563-75172582 | None:intergenic | 10.0% |
| !!! | TATACATTTTTTTTTTTTGA+AGG | - | chr3.2:75170733-75170752 | MS.gene045059:intron | 10.0% |
| !! | TCAAAAGAAGAAAAAATTAA+TGG | + | chr3.2:75172388-75172407 | None:intergenic | 15.0% |
| !!! | AAATTAAATCCTAACATTTT+GGG | - | chr3.2:75172258-75172277 | MS.gene045059:intron | 15.0% |
| !!! | AGAAAATTAATTTTACTTCA+AGG | - | chr3.2:75171422-75171441 | MS.gene045059:intron | 15.0% |
| !!! | ATATATATTCTCTTGTTTAT+AGG | - | chr3.2:75170852-75170871 | MS.gene045059:intron | 15.0% |
| !!! | CTTAGCTTTATTAATTTTAT+GGG | + | chr3.2:75170249-75170268 | None:intergenic | 15.0% |
| !!! | GAACATTAAATTTTTATGTT+TGG | - | chr3.2:75171117-75171136 | MS.gene045059:intron | 15.0% |
| !!! | TAAATTAAATCCTAACATTT+TGG | - | chr3.2:75172257-75172276 | MS.gene045059:intron | 15.0% |
| !!! | TTAGCTTTATTAATTTTATG+GGG | + | chr3.2:75170248-75170267 | None:intergenic | 15.0% |
| !!! | TTTGATATTTGATTTTTAAG+TGG | + | chr3.2:75172047-75172066 | None:intergenic | 15.0% |
| !! | AAATACTTCTTCAAAGAAAA+AGG | - | chr3.2:75172575-75172594 | MS.gene045059:CDS | 20.0% |
| !! | AACTATTCAAAATACATACA+AGG | - | chr3.2:75171782-75171801 | MS.gene045059:intron | 20.0% |
| !! | ACAAAAAAAGAATAGATACA+TGG | + | chr3.2:75172361-75172380 | None:intergenic | 20.0% |
| !! | ATACATGTTATATATGGATA+TGG | - | chr3.2:75170499-75170518 | MS.gene045059:intron | 20.0% |
| !! | ATGCAACAATTTAAAGATTT+GGG | + | chr3.2:75171917-75171936 | None:intergenic | 20.0% |
| !! | GAAAAAAGAATACAATTCAA+TGG | - | chr3.2:75170904-75170923 | MS.gene045059:intron | 20.0% |
| !! | GTACTACATATATATGATAA+TGG | - | chr3.2:75170705-75170724 | MS.gene045059:intron | 20.0% |
| !! | TGAATGAAAGTAATTTGATA+AGG | + | chr3.2:75170453-75170472 | None:intergenic | 20.0% |
| !!! | ACAATTCAAAAAGAAGTATA+AGG | - | chr3.2:75171702-75171721 | MS.gene045059:intron | 20.0% |
| !!! | AGATAGATTTAGTTCATATA+TGG | + | chr3.2:75172222-75172241 | None:intergenic | 20.0% |
| !!! | CAATTCAAAAAGAAGTATAA+GGG | - | chr3.2:75171703-75171722 | MS.gene045059:intron | 20.0% |
| !!! | GCTTAGCTTTATTAATTTTA+TGG | + | chr3.2:75170250-75170269 | None:intergenic | 20.0% |
| !!! | TATACTTCTTTTTGAATTGT+TGG | + | chr3.2:75171702-75171721 | None:intergenic | 20.0% |
| !!! | TCTCTTTTTTAAACTTGAAT+AGG | - | chr3.2:75171294-75171313 | MS.gene045059:intron | 20.0% |
| ! | AAATCAAGAATTGAGAAAGA+GGG | - | chr3.2:75171753-75171772 | MS.gene045059:intron | 25.0% |
| ! | AACAATTTAAAGATTTGGGA+GGG | + | chr3.2:75171913-75171932 | None:intergenic | 25.0% |
| ! | ACATTAATAGTATCAGCAAA+CGG | - | chr3.2:75172907-75172926 | MS.gene045059:CDS | 25.0% |
| ! | AGAAAGAGTAAGAAAGAAAA+AGG | - | chr3.2:75172282-75172301 | MS.gene045059:intron | 25.0% |
| ! | AGCATACATTAAATCAGATT+AGG | - | chr3.2:75170882-75170901 | MS.gene045059:intron | 25.0% |
| ! | ATGAAAGTAATTTGATAAGG+AGG | + | chr3.2:75170450-75170469 | None:intergenic | 25.0% |
| ! | CATATATGACTTATGATACA+TGG | - | chr3.2:75170792-75170811 | MS.gene045059:intron | 25.0% |
| ! | CATGCAACAATTTAAAGATT+TGG | + | chr3.2:75171918-75171937 | None:intergenic | 25.0% |
| ! | CATGGATCAAAACAATAATT+AGG | + | chr3.2:75170986-75171005 | None:intergenic | 25.0% |
| ! | TAAATCAAGAATTGAGAAAG+AGG | - | chr3.2:75171752-75171771 | MS.gene045059:intron | 25.0% |
| ! | TAACAATTTCAACAGTCTAA+AGG | + | chr3.2:75170391-75170410 | None:intergenic | 25.0% |
| ! | TAATATAGAAGACTTTGTTG+AGG | + | chr3.2:75169978-75169997 | None:intergenic | 25.0% |
| ! | TAATTAATTGTAACTACCCA+AGG | + | chr3.2:75172131-75172150 | None:intergenic | 25.0% |
| ! | TCAAGTTTAAAAAAGAGAGA+GGG | + | chr3.2:75171292-75171311 | None:intergenic | 25.0% |
| ! | TCCTAATAATTGAGATTGTA+CGG | + | chr3.2:75169771-75169790 | None:intergenic | 25.0% |
| ! | TCTCCTATGTCTAATAAAAT+TGG | + | chr3.2:75171659-75171678 | None:intergenic | 25.0% |
| ! | TGATTTACTTAAAAGAGTCA+AGG | - | chr3.2:75171228-75171247 | MS.gene045059:intron | 25.0% |
| ! | TGGAATAAAAATCACTGAAA+TGG | + | chr3.2:75171957-75171976 | None:intergenic | 25.0% |
| !! | AAATCTCTCTTTTGTGAAAA+AGG | - | chr3.2:75171061-75171080 | MS.gene045059:intron | 25.0% |
| !! | AACAACTTAATTTGGCTAAT+AGG | - | chr3.2:75172688-75172707 | MS.gene045059:intron | 25.0% |
| !! | AACTATCTTGAAAACTTTTG+AGG | + | chr3.2:75170075-75170094 | None:intergenic | 25.0% |
| !! | AATTAATTTTACTTCAAGGC+TGG | - | chr3.2:75171426-75171445 | MS.gene045059:intron | 25.0% |
| !! | AGAATTTTGTGTACTGAATT+TGG | - | chr3.2:75169834-75169853 | MS.gene045059:CDS | 25.0% |
| !! | CATCCAATTTTATTAGACAT+AGG | - | chr3.2:75171653-75171672 | MS.gene045059:intron | 25.0% |
| !! | CCTCTAAAAAAAATACAGTT+AGG | - | chr3.2:75170565-75170584 | MS.gene045059:intron | 25.0% |
| !! | GGAATTATATATGTTGATGA+AGG | + | chr3.2:75170547-75170566 | None:intergenic | 25.0% |
| !! | TGTGACTTTAAAGATAGTTA+CGG | - | chr3.2:75171546-75171565 | MS.gene045059:intron | 25.0% |
| !! | TTCAAGTTTAAAAAAGAGAG+AGG | + | chr3.2:75171293-75171312 | None:intergenic | 25.0% |
| !!! | AAGAATTTTCAAGGGATTTT+AGG | + | chr3.2:75172791-75172810 | None:intergenic | 25.0% |
| !!! | AGCAAATATACCTTTTTTTC+TGG | + | chr3.2:75170138-75170157 | None:intergenic | 25.0% |
| !!! | ATGTTGATGAAGGTAATTTT+TGG | + | chr3.2:75170537-75170556 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGTGGATCATAGT+TGG | + | chr3.2:75172036-75172055 | None:intergenic | 25.0% |
| !!! | CCTAACTGTATTTTTTTTAG+AGG | + | chr3.2:75170568-75170587 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGTCCAGAAAAAA+AGG | - | chr3.2:75170125-75170144 | MS.gene045059:CDS | 25.0% |
| !!! | TTGATTTAGAGTCTTTGTTT+TGG | + | chr3.2:75171740-75171759 | None:intergenic | 25.0% |
| !!! | TTGGTTAAGTAATTGTTTTG+TGG | - | chr3.2:75169853-75169872 | MS.gene045059:CDS | 25.0% |
| AAAAAAGAGAGAGGGAATTT+AGG | + | chr3.2:75171284-75171303 | None:intergenic | 30.0% | |
| AAAAAGAGAGAGGGAATTTA+GGG | + | chr3.2:75171283-75171302 | None:intergenic | 30.0% | |
| ACTTACATGCTAATTCTAGA+AGG | + | chr3.2:75172482-75172501 | None:intergenic | 30.0% | |
| AGATTGTACGGAAAAAATGT+TGG | + | chr3.2:75169759-75169778 | None:intergenic | 30.0% | |
| ATGATGAAACATGAGGTTAT+GGG | + | chr3.2:75172105-75172124 | None:intergenic | 30.0% | |
| CAACAATTTAAAGATTTGGG+AGG | + | chr3.2:75171914-75171933 | None:intergenic | 30.0% | |
| TAAACCAAAGCGACTTTATA+TGG | - | chr3.2:75170613-75170632 | MS.gene045059:intron | 30.0% | |
| TATGATGAAACATGAGGTTA+TGG | + | chr3.2:75172106-75172125 | None:intergenic | 30.0% | |
| TCCGTACAATCTCAATTATT+AGG | - | chr3.2:75169767-75169786 | MS.gene045059:CDS | 30.0% | |
| TCCTAACTAAGAAAGGAAAA+AGG | + | chr3.2:75170327-75170346 | None:intergenic | 30.0% | |
| TCTTAAGTCCTAACTAAGAA+AGG | + | chr3.2:75170334-75170353 | None:intergenic | 30.0% | |
| TTAGAAGAAAAAAACGCAGA+AGG | + | chr3.2:75170363-75170382 | None:intergenic | 30.0% | |
| TTAGTAGTATTATGCTGAGT+GGG | - | chr3.2:75170408-75170427 | MS.gene045059:intron | 30.0% | |
| TTTGTGAAAAAGGATACGTA+CGG | - | chr3.2:75171071-75171090 | MS.gene045059:intron | 30.0% | |
| ! | ATTGATGCAGCATTAGATTT+TGG | + | chr3.2:75172629-75172648 | None:intergenic | 30.0% |
| ! | CTCATCAGAAGAATTTTCAA+GGG | + | chr3.2:75172799-75172818 | None:intergenic | 30.0% |
| ! | TAGATGATAGTGTCATTGAT+AGG | - | chr3.2:75169681-75169700 | MS.gene045059:CDS | 30.0% |
| ! | TAGATGTAATTTTGTCGACA+AGG | + | chr3.2:75172070-75172089 | None:intergenic | 30.0% |
| ! | TCCTTTTTCCTTTCTTAGTT+AGG | - | chr3.2:75170323-75170342 | MS.gene045059:intron | 30.0% |
| ! | TGATTTTTATTCCACGACAA+AGG | - | chr3.2:75171963-75171982 | MS.gene045059:intron | 30.0% |
| ! | TTTTTCCTCAAAGAACTTGA+AGG | + | chr3.2:75171875-75171894 | None:intergenic | 30.0% |
| !! | AGTTTAATTTTCGCATCTTG+TGG | - | chr3.2:75171486-75171505 | MS.gene045059:intron | 30.0% |
| !! | GATAAGGCTTTGAAATATCT+TGG | - | chr3.2:75169920-75169939 | MS.gene045059:intron | 30.0% |
| !! | TATCTTGAAAACTTTTGAGG+AGG | + | chr3.2:75170072-75170091 | None:intergenic | 30.0% |
| !! | TTATTTTTCATCCTTTGTCG+TGG | + | chr3.2:75171977-75171996 | None:intergenic | 30.0% |
| !!! | ATTTAGAGTCTTTGTTTTGG+TGG | + | chr3.2:75171737-75171756 | None:intergenic | 30.0% |
| !!! | TTTAGAGTCTTTGTTTTGGT+GGG | + | chr3.2:75171736-75171755 | None:intergenic | 30.0% |
| AACTCCATATAAAGTCGCTT+TGG | + | chr3.2:75170620-75170639 | None:intergenic | 35.0% | |
| AAGGTGTATGATGAAACATG+AGG | + | chr3.2:75172112-75172131 | None:intergenic | 35.0% | |
| AGATCAATGCCCAAAATGAA+AGG | - | chr3.2:75172957-75172976 | MS.gene045059:CDS | 35.0% | |
| AGTCAACACGATAAAATGGA+TGG | + | chr3.2:75170299-75170318 | None:intergenic | 35.0% | |
| CAAGAATATAGTGTCTGCTA+TGG | - | chr3.2:75171015-75171034 | MS.gene045059:intron | 35.0% | |
| CATGTTTCATCATACACCTT+GGG | - | chr3.2:75172112-75172131 | MS.gene045059:intron | 35.0% | |
| CTCTTTCTACCCAAAATGTT+AGG | + | chr3.2:75172270-75172289 | None:intergenic | 35.0% | |
| CTTAGAGATTCTTCATGCAA+AGG | - | chr3.2:75169722-75169741 | MS.gene045059:CDS | 35.0% | |
| GATCAATGCCCAAAATGAAA+GGG | - | chr3.2:75172958-75172977 | MS.gene045059:CDS | 35.0% | |
| GCTTAGTCAACACGATAAAA+TGG | + | chr3.2:75170303-75170322 | None:intergenic | 35.0% | |
| GTTAGTAGTATTATGCTGAG+TGG | - | chr3.2:75170407-75170426 | MS.gene045059:intron | 35.0% | |
| TAATAGTATCAGCAAACGGA+AGG | - | chr3.2:75172911-75172930 | MS.gene045059:CDS | 35.0% | |
| TAATTTGGCTAATAGGTGCT+TGG | - | chr3.2:75172695-75172714 | MS.gene045059:intron | 35.0% | |
| TAGTAGTATTATGCTGAGTG+GGG | - | chr3.2:75170409-75170428 | MS.gene045059:intron | 35.0% | |
| TCATCAAAGTAACCTCTTAG+AGG | + | chr3.2:75171834-75171853 | None:intergenic | 35.0% | |
| TCATGTTTCATCATACACCT+TGG | - | chr3.2:75172111-75172130 | MS.gene045059:intron | 35.0% | |
| TGCAAATCTGATAACTGAAG+AGG | + | chr3.2:75172750-75172769 | None:intergenic | 35.0% | |
| TGTTAAAACAGTTACCTGTG+TGG | - | chr3.2:75169889-75169908 | MS.gene045059:intron | 35.0% | |
| TTCTTCATGCAAAGGTAGTT+AGG | - | chr3.2:75169730-75169749 | MS.gene045059:CDS | 35.0% | |
| ! | ATCATGTGCACTATTTTGCA+GGG | - | chr3.2:75171151-75171170 | MS.gene045059:intron | 35.0% |
| ! | GCTCATCAGAAGAATTTTCA+AGG | + | chr3.2:75172800-75172819 | None:intergenic | 35.0% |
| !! | TCAAGGGATTTTAGGAAGTA+TGG | + | chr3.2:75172783-75172802 | None:intergenic | 35.0% |
| !! | TGTTCTTGCTTCAAGTTTTG+TGG | + | chr3.2:75169644-75169663 | None:intergenic | 35.0% |
| AAAGAAAACTGCTTACGAGC+AGG | - | chr3.2:75171614-75171633 | MS.gene045059:intron | 40.0% | |
| AATGCCCAAAATGAAAGGGT+TGG | - | chr3.2:75172962-75172981 | MS.gene045059:CDS | 40.0% | |
| AGGGAATTTAGGGAAGATGT+CGG | + | chr3.2:75171273-75171292 | None:intergenic | 40.0% | |
| AGTTCACTAGCACTTTGCAA+AGG | - | chr3.2:75171395-75171414 | MS.gene045059:CDS | 40.0% | |
| ATATTCTTGCGAGGAGATCA+TGG | + | chr3.2:75171004-75171023 | None:intergenic | 40.0% | |
| ATGACAGATTATTGCATGCC+TGG | - | chr3.2:75171193-75171212 | MS.gene045059:intron | 40.0% | |
| ATTACCTCTTGTAGCTGCAA+TGG | + | chr3.2:75170028-75170047 | None:intergenic | 40.0% | |
| CTAATAGGTGCTTGGAAGAA+GGG | - | chr3.2:75172703-75172722 | MS.gene045059:intron | 40.0% | |
| GCAAGAACACTTTCATGTGT+TGG | - | chr3.2:75169655-75169674 | MS.gene045059:CDS | 40.0% | |
| GGAGGATCTGAAAGAGAAAT+TGG | + | chr3.2:75170644-75170663 | None:intergenic | 40.0% | |
| TAATAGGTGCTTGGAAGAAG+GGG | - | chr3.2:75172704-75172723 | MS.gene045059:intron | 40.0% | |
| TCAAAGTAACCTCTTAGAGG+TGG | + | chr3.2:75171831-75171850 | None:intergenic | 40.0% | |
| TCTGATGACATAACCACAAC+TGG | + | chr3.2:75172452-75172471 | None:intergenic | 40.0% | |
| TGACAGATTATTGCATGCCT+GGG | - | chr3.2:75171194-75171213 | MS.gene045059:intron | 40.0% | |
| TGAGTGGGGATATTGAACTT+TGG | - | chr3.2:75170423-75170442 | MS.gene045059:intron | 40.0% | |
| TTCAGATCCTCCATTCATCT+AGG | - | chr3.2:75170652-75170671 | MS.gene045059:intron | 40.0% | |
| TTCCTCAAAGAACTTGAAGG+TGG | + | chr3.2:75171872-75171891 | None:intergenic | 40.0% | |
| TTGGAAAGATGTTCCAGTTG+TGG | - | chr3.2:75172436-75172455 | MS.gene045059:intron | 40.0% | |
| ! | CATCATGTGCACTATTTTGC+AGG | - | chr3.2:75171150-75171169 | MS.gene045059:intron | 40.0% |
| ! | TTCCACCTTCAAGTTCTTTG+AGG | - | chr3.2:75171867-75171886 | MS.gene045059:intron | 40.0% |
| ! | TTGATAGGATGCTTCTAGAG+AGG | - | chr3.2:75169696-75169715 | MS.gene045059:CDS | 40.0% |
| !! | CTTGAAAACTTTTGAGGAGG+AGG | + | chr3.2:75170069-75170088 | None:intergenic | 40.0% |
| !!! | ATTTTGGGCATTGATCTCTC+TGG | + | chr3.2:75172954-75172973 | None:intergenic | 40.0% |
| AAATCATAGCCACTCATCCC+AGG | + | chr3.2:75171214-75171233 | None:intergenic | 45.0% | |
| ACAACCATTGCAGCTACAAG+AGG | - | chr3.2:75170021-75170040 | MS.gene045059:intron | 45.0% | |
| AGCTAGAAACCACCTCTAAG+AGG | - | chr3.2:75171819-75171838 | MS.gene045059:intron | 45.0% | |
| AGCTGCAATGGTTGTTGAAG+AGG | + | chr3.2:75170016-75170035 | None:intergenic | 45.0% | |
| GAAGGTGGAAGAGATTGTAG+AGG | + | chr3.2:75171857-75171876 | None:intergenic | 45.0% | |
| GCAGACACTATATTCTTGCG+AGG | + | chr3.2:75171013-75171032 | None:intergenic | 45.0% | |
| GCTAATAGGTGCTTGGAAGA+AGG | - | chr3.2:75172702-75172721 | MS.gene045059:intron | 45.0% | |
| GGAATTTAGGGAAGATGTCG+GGG | + | chr3.2:75171271-75171290 | None:intergenic | 45.0% | |
| GGGAATTTAGGGAAGATGTC+GGG | + | chr3.2:75171272-75171291 | None:intergenic | 45.0% | |
| GTACGTACAGTGCAGTGAAA+AGG | + | chr3.2:75170962-75170981 | None:intergenic | 45.0% | |
| TGCAATGGTTGTTGAAGAGG+AGG | + | chr3.2:75170013-75170032 | None:intergenic | 45.0% | |
| ! | ACCGCCAACCCTTTCATTTT+GGG | + | chr3.2:75172969-75172988 | None:intergenic | 45.0% |
| !!! | TTTATTTTATATATTTTGAA+TGG | - | chr3.2:75171570-75171589 | MS.gene045059:intron | 5.0% |
| ACACTGCTTACTGCACTGCA+GGG | - | chr3.2:75172407-75172426 | MS.gene045059:intron | 50.0% | |
| ACAGTTACCTGTGTGGACTC+TGG | - | chr3.2:75169896-75169915 | MS.gene045059:intron | 50.0% | |
| CTTATCTCCAGAGTCCACAC+AGG | + | chr3.2:75169906-75169925 | None:intergenic | 50.0% | |
| GCCCAAAATGAAAGGGTTGG+CGG | - | chr3.2:75172965-75172984 | MS.gene045059:CDS | 50.0% | |
| TATTGCATGCCTGGGATGAG+TGG | - | chr3.2:75171202-75171221 | MS.gene045059:intron | 50.0% | |
| TCCTCCATTCATCTAGGTCG+CGG | - | chr3.2:75170658-75170677 | MS.gene045059:intron | 50.0% | |
| TTCCACTACCACCACAGACT+CGG | - | chr3.2:75172836-75172855 | MS.gene045059:intron | 50.0% | |
| ! | ATTGATCTCTCTGGAGGCTC+AGG | + | chr3.2:75172945-75172964 | None:intergenic | 50.0% |
| ! | CAAAATGAAAGGGTTGGCGG+TGG | - | chr3.2:75172968-75172987 | MS.gene045059:CDS | 50.0% |
| ! | CACCGCCAACCCTTTCATTT+TGG | + | chr3.2:75172970-75172989 | None:intergenic | 50.0% |
| ! | CTGTGTGGACTCTGGAGATA+AGG | - | chr3.2:75169904-75169923 | MS.gene045059:intron | 50.0% |
| !! | TGTGGTGGTAGTGGAACTGT+TGG | + | chr3.2:75172832-75172851 | None:intergenic | 50.0% |
| !! | TTGGGCATTGATCTCTCTGG+AGG | + | chr3.2:75172951-75172970 | None:intergenic | 50.0% |
| CTGCACTGCAGGGATCTTCT+TGG | - | chr3.2:75172417-75172436 | MS.gene045059:intron | 55.0% | |
| GACACTGCTTACTGCACTGC+AGG | - | chr3.2:75172406-75172425 | MS.gene045059:intron | 55.0% | |
| GCATCCGCGACCTAGATGAA+TGG | + | chr3.2:75170665-75170684 | None:intergenic | 55.0% | |
| TCCGCGACCTAGATGAATGG+AGG | + | chr3.2:75170662-75170681 | None:intergenic | 55.0% | |
| ! | AATGAAAGGGTTGGCGGTGG+TGG | - | chr3.2:75172971-75172990 | MS.gene045059:CDS | 55.0% |
| GTCCGAGTCTGTGGTGGTAG+TGG | + | chr3.2:75172841-75172860 | None:intergenic | 60.0% | |
| GTTGTCGTCGTCCGAGTCTG+TGG | + | chr3.2:75172850-75172869 | None:intergenic | 60.0% | |
| ! | CTCTGGAGGCTCAGGAGACA+TGG | + | chr3.2:75172937-75172956 | None:intergenic | 60.0% |
| GTCGTCGTCCGAGTCTGTGG+TGG | + | chr3.2:75172847-75172866 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 75169602 | 75172998 | 75169602 | ID=MS.gene045059 |
| chr3.2 | mRNA | 75169602 | 75172998 | 75169602 | ID=MS.gene045059.t1;Parent=MS.gene045059 |
| chr3.2 | exon | 75172857 | 75172998 | 75172857 | ID=MS.gene045059.t1.exon1;Parent=MS.gene045059.t1 |
| chr3.2 | CDS | 75172857 | 75172998 | 75172857 | ID=cds.MS.gene045059.t1;Parent=MS.gene045059.t1 |
| chr3.2 | exon | 75172558 | 75172700 | 75172558 | ID=MS.gene045059.t1.exon2;Parent=MS.gene045059.t1 |
| chr3.2 | CDS | 75172558 | 75172700 | 75172558 | ID=cds.MS.gene045059.t1;Parent=MS.gene045059.t1 |
| chr3.2 | exon | 75171351 | 75171428 | 75171351 | ID=MS.gene045059.t1.exon3;Parent=MS.gene045059.t1 |
| chr3.2 | CDS | 75171351 | 75171428 | 75171351 | ID=cds.MS.gene045059.t1;Parent=MS.gene045059.t1 |
| chr3.2 | exon | 75170105 | 75170172 | 75170105 | ID=MS.gene045059.t1.exon4;Parent=MS.gene045059.t1 |
| chr3.2 | CDS | 75170105 | 75170172 | 75170105 | ID=cds.MS.gene045059.t1;Parent=MS.gene045059.t1 |
| chr3.2 | exon | 75169602 | 75169890 | 75169602 | ID=MS.gene045059.t1.exon5;Parent=MS.gene045059.t1 |
| chr3.2 | CDS | 75169602 | 75169890 | 75169602 | ID=cds.MS.gene045059.t1;Parent=MS.gene045059.t1 |
| Gene Sequence |
| Protein sequence |
