Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045098.t1 | XP_003601983.1 | 95.3 | 429 | 19 | 1 | 1 | 429 | 1 | 428 | 1.90E-222 | 781.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045098.t1 | Q9SLH0 | 61.6 | 279 | 93 | 5 | 10 | 280 | 28 | 300 | 3.9e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045098.t1 | G7J4B1 | 95.3 | 429 | 19 | 1 | 1 | 429 | 1 | 428 | 1.4e-222 | 781.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045098.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045098.t1 | MTR_3g087530 | 95.804 | 429 | 17 | 1 | 1 | 429 | 1 | 428 | 0.0 | 790 |
| MS.gene045098.t1 | MTR_8g091370 | 51.965 | 458 | 171 | 8 | 1 | 423 | 1 | 444 | 6.07e-148 | 428 |
| MS.gene045098.t1 | MTR_5g087790 | 56.869 | 313 | 111 | 7 | 22 | 326 | 39 | 335 | 1.06e-113 | 346 |
| MS.gene045098.t1 | MTR_3g078770 | 57.718 | 298 | 102 | 6 | 2 | 280 | 9 | 301 | 2.42e-110 | 338 |
| MS.gene045098.t1 | MTR_2g098470 | 54.237 | 295 | 114 | 6 | 27 | 305 | 33 | 322 | 9.08e-101 | 313 |
| MS.gene045098.t1 | MTR_6g460640 | 48.175 | 274 | 121 | 6 | 16 | 280 | 26 | 287 | 1.02e-85 | 275 |
| MS.gene045098.t1 | MTR_6g060600 | 39.454 | 403 | 199 | 10 | 16 | 403 | 26 | 398 | 4.20e-84 | 271 |
| MS.gene045098.t1 | MTR_3g010790 | 50.495 | 202 | 90 | 3 | 83 | 280 | 1 | 196 | 2.15e-69 | 228 |
| MS.gene045098.t1 | MTR_1g024420 | 46.078 | 102 | 50 | 2 | 29 | 125 | 7 | 108 | 4.11e-24 | 97.1 |
| MS.gene045098.t1 | MTR_7g095580 | 41.250 | 80 | 43 | 1 | 72 | 151 | 1 | 76 | 9.12e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045098.t1 | AT5G65100 | 61.679 | 274 | 87 | 1 | 27 | 282 | 33 | 306 | 5.16e-120 | 360 |
| MS.gene045098.t1 | AT5G10120 | 53.939 | 330 | 140 | 5 | 25 | 349 | 16 | 338 | 1.34e-118 | 354 |
| MS.gene045098.t1 | AT2G27050 | 61.649 | 279 | 93 | 5 | 10 | 280 | 28 | 300 | 4.20e-115 | 349 |
| MS.gene045098.t1 | AT3G20770 | 55.937 | 320 | 112 | 9 | 13 | 322 | 31 | 331 | 8.89e-111 | 339 |
| MS.gene045098.t1 | AT1G73730 | 48.773 | 326 | 145 | 6 | 4 | 323 | 11 | 320 | 1.91e-99 | 308 |
| MS.gene045098.t1 | AT1G73730 | 48.916 | 323 | 143 | 6 | 7 | 323 | 2 | 308 | 4.17e-99 | 307 |
| MS.gene045098.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.43e-78 | 252 |
| MS.gene045098.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.43e-78 | 252 |
| MS.gene045098.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 59 | 311 | 3.05e-78 | 252 |
Find 93 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTACAATAGACAATTTA+TGG | 0.077687 | 3.4:-81199304 | None:intergenic |
| GAGATTGAAGGTGGGAAATT+TGG | 0.186624 | 3.4:+81199533 | MS.gene045098:CDS |
| TGTTGATGATTGGTTGAAAA+TGG | 0.189311 | 3.4:+81199508 | MS.gene045098:CDS |
| AGAAGATGTATGTAAGAATT+TGG | 0.224002 | 3.4:-81198897 | None:intergenic |
| AAGGTGGTGGGCCTTGTTCT+TGG | 0.225823 | 3.4:-81199076 | None:intergenic |
| AAAACATATGTCACCTGATT+TGG | 0.233366 | 3.4:+81199157 | MS.gene045098:CDS |
| AGGTCATGTGGTTTCTTATA+AGG | 0.240985 | 3.4:-81199095 | None:intergenic |
| CACCTGATTTGGAGAAATTA+AGG | 0.264068 | 3.4:+81199168 | MS.gene045098:CDS |
| GCATCACAATCAAGCAAATT+AGG | 0.277177 | 3.4:-81199473 | None:intergenic |
| TTCCTTAATTTCTCCAAATC+AGG | 0.277968 | 3.4:-81199170 | None:intergenic |
| GGCCCACAGGATTAGAAAAT+TGG | 0.318543 | 3.4:+81199030 | MS.gene045098:CDS |
| GAAACCACATGACCTTAAAA+AGG | 0.331860 | 3.4:+81199103 | MS.gene045098:CDS |
| AGACAATTTATGGCATTTAT+CGG | 0.339024 | 3.4:-81199294 | None:intergenic |
| TAAAATGTTCATCTTCTTGA+AGG | 0.356058 | 3.4:-81198857 | None:intergenic |
| AGGTGGTGGGCCTTGTTCTT+GGG | 0.363001 | 3.4:-81199075 | None:intergenic |
| GGCATGGAAAGTTTCTGTTT+TGG | 0.364875 | 3.4:+81199124 | MS.gene045098:CDS |
| ATCTACCTCTTCAGTTCCTT+CGG | 0.367358 | 3.4:-81198487 | None:intergenic |
| GCGGCAATCGAAATGGTAAA+AGG | 0.387494 | 3.4:+81199605 | MS.gene045098:CDS |
| GAGTTGAATCTTGTAAATCT+TGG | 0.394723 | 3.4:-81198920 | None:intergenic |
| TTTGGAGAAATTAAGGAAGT+TGG | 0.395073 | 3.4:+81199175 | MS.gene045098:CDS |
| GAAAAGGGTAAACCAGTATC+AGG | 0.402465 | 3.4:+81198747 | MS.gene045098:CDS |
| GATTCCATAAACAAAACCTT+TGG | 0.403082 | 3.4:-81198718 | None:intergenic |
| AGTGAAGAAATTGATCCTTA+TGG | 0.408727 | 3.4:+81198456 | MS.gene045098:CDS |
| CCTTCGGCTTCCGCGCCATA+AGG | 0.409758 | 3.4:-81198471 | None:intergenic |
| GATTTACAAGATTCAACTCT+TGG | 0.415106 | 3.4:+81198924 | MS.gene045098:CDS |
| TTATGGAATCATCCCTGAAA+AGG | 0.418370 | 3.4:+81198731 | MS.gene045098:CDS |
| TGTGGTTTCTTATAAGGTGG+TGG | 0.433405 | 3.4:-81199089 | None:intergenic |
| GAATTGAAAATGTTGATGAT+TGG | 0.439281 | 3.4:+81199498 | MS.gene045098:CDS |
| GTTGATGATTGGTTGAAAAT+GGG | 0.440872 | 3.4:+81199509 | MS.gene045098:CDS |
| CTATCAGAAGAACCTGATAC+TGG | 0.447835 | 3.4:-81198759 | None:intergenic |
| CAAATACATGGCAAAGATCA+TGG | 0.447987 | 3.4:+81198683 | MS.gene045098:CDS |
| GTAATAACAGAAGTGAGAAA+AGG | 0.454452 | 3.4:+81199363 | MS.gene045098:CDS |
| ATTCGAAGCGGCAATCGAAA+TGG | 0.459117 | 3.4:+81199598 | MS.gene045098:CDS |
| AATCAAGAAGAAGCTTTGCT+TGG | 0.469320 | 3.4:+81199266 | MS.gene045098:CDS |
| TGTTCATCTTCTTGAAGGAT+AGG | 0.475070 | 3.4:-81198852 | None:intergenic |
| CATTCTATTTAGTCTTGCGC+TGG | 0.480486 | 3.4:-81199719 | None:intergenic |
| CTGCAAGAGATAGTGCTACT+TGG | 0.489905 | 3.4:+81199231 | MS.gene045098:CDS |
| TTGAAGGTGGGAAATTTGGA+TGG | 0.490896 | 3.4:+81199537 | MS.gene045098:CDS |
| TATGGAATCATCCCTGAAAA+GGG | 0.513987 | 3.4:+81198732 | MS.gene045098:CDS |
| GTGGTTTCTTATAAGGTGGT+GGG | 0.519151 | 3.4:-81199088 | None:intergenic |
| GTGGGGTGAACAAGGTCTGT+TGG | 0.522121 | 3.4:+81199052 | MS.gene045098:CDS |
| TCTCCTCCATGGTGGCCCAC+AGG | 0.524329 | 3.4:+81199017 | MS.gene045098:CDS |
| TTGAAAATGGGAGAGATTGA+AGG | 0.525609 | 3.4:+81199521 | MS.gene045098:CDS |
| CAAAACAAGAAGCATCAAGA+AGG | 0.533135 | 3.4:+81198628 | MS.gene045098:CDS |
| AGAGGGGAATTTCTCCTCCA+TGG | 0.534345 | 3.4:+81199006 | MS.gene045098:CDS |
| TCCGCAGAGTAAGTTACCTA+TGG | 0.540781 | 3.4:+81199424 | MS.gene045098:CDS |
| GTAGAGGAAGGTGAAAGCTC+TGG | 0.542132 | 3.4:+81199320 | MS.gene045098:CDS |
| GAAAATTGGTGGGGTGAACA+AGG | 0.545195 | 3.4:+81199044 | MS.gene045098:CDS |
| CCACAGGATTAGAAAATTGG+TGG | 0.547684 | 3.4:+81199033 | MS.gene045098:CDS |
| AACAGAAAGTGTGGACTATG+AGG | 0.556253 | 3.4:+81198518 | MS.gene045098:CDS |
| TGAAGGTGGGAAATTTGGAT+GGG | 0.560628 | 3.4:+81199538 | MS.gene045098:CDS |
| GGTCTGTTGGCCCAAGAACA+AGG | 0.567933 | 3.4:+81199065 | MS.gene045098:CDS |
| CTTCTGATAGTTTACGCGAG+TGG | 0.569816 | 3.4:+81198772 | MS.gene045098:CDS |
| CCATAAATTGTCTATTGTAG+AGG | 0.575509 | 3.4:+81199304 | MS.gene045098:CDS |
| AAAATGGGAGAGATTGAAGG+TGG | 0.578746 | 3.4:+81199524 | MS.gene045098:CDS |
| AGGAGCTGAAGAAACGTATG+TGG | 0.578948 | 3.4:+81198538 | MS.gene045098:CDS |
| TCTAATCCTGTGGGCCACCA+TGG | 0.579340 | 3.4:-81199023 | None:intergenic |
| CTGATAGTTTACGCGAGTGG+TGG | 0.579904 | 3.4:+81198775 | MS.gene045098:CDS |
| TGATCAAAGTGCACCACTCG+CGG | 0.580612 | 3.4:+81198815 | MS.gene045098:CDS |
| CCTTATGGCGCGGAAGCCGA+AGG | 0.583226 | 3.4:+81198471 | MS.gene045098:CDS |
| CACAGGATTAGAAAATTGGT+GGG | 0.587810 | 3.4:+81199034 | MS.gene045098:CDS |
| GAGGAGGTTTCCACTCGAGA+GGG | 0.588256 | 3.4:+81198989 | MS.gene045098:CDS |
| AAATGGGAGAGATTGAAGGT+GGG | 0.590105 | 3.4:+81199525 | MS.gene045098:CDS |
| GTTGTTAAACTCATAGCCAT+AGG | 0.592800 | 3.4:-81199440 | None:intergenic |
| GTGGTGCACTTTGATCAAAA+CGG | 0.595848 | 3.4:-81198809 | None:intergenic |
| TGAAACTGAAACAGAAAGTG+TGG | 0.596612 | 3.4:+81198509 | MS.gene045098:CDS |
| GGAGAAATTCCCCTCTCGAG+TGG | 0.599812 | 3.4:-81198999 | None:intergenic |
| TCATGTGGTTTCTTATAAGG+TGG | 0.601388 | 3.4:-81199092 | None:intergenic |
| AGTGGAAACCTCCTCTGTGG+TGG | 0.601734 | 3.4:-81198981 | None:intergenic |
| TTGGATGGGATGTTGAACAT+TGG | 0.603559 | 3.4:+81199552 | MS.gene045098:CDS |
| GCATAATCTACATGATCAAG+AGG | 0.603727 | 3.4:+81199661 | MS.gene045098:CDS |
| GCTGAAGAAACGTATGTGGA+AGG | 0.612562 | 3.4:+81198542 | MS.gene045098:CDS |
| AAGCAAATTAGGAACACGAT+GGG | 0.617311 | 3.4:-81199462 | None:intergenic |
| AAATTGTCTATTGTAGAGGA+AGG | 0.619180 | 3.4:+81199308 | MS.gene045098:CDS |
| AGATTCAGTACTCAAATACA+TGG | 0.630198 | 3.4:+81198671 | MS.gene045098:CDS |
| AGAGGAGGTTTCCACTCGAG+AGG | 0.641374 | 3.4:+81198988 | MS.gene045098:CDS |
| TGAACATTGGCTGAATGATG+TGG | 0.642242 | 3.4:+81199565 | MS.gene045098:CDS |
| ATGGATGTATGCAAAGCCAA+AGG | 0.644473 | 3.4:+81198702 | MS.gene045098:CDS |
| GGTAAAAGGTAATCATAACA+TGG | 0.646961 | 3.4:+81199619 | MS.gene045098:CDS |
| CAAGCAAATTAGGAACACGA+TGG | 0.654501 | 3.4:-81199463 | None:intergenic |
| GGAAGCCGAAGGAACTGAAG+AGG | 0.657866 | 3.4:+81198482 | MS.gene045098:CDS |
| TTCTTCACTGATCACCACCA+TGG | 0.663634 | 3.4:-81198442 | None:intergenic |
| GGGGAATTTCTCCTCCATGG+TGG | 0.664010 | 3.4:+81199009 | MS.gene045098:CDS |
| GAGGAAGGTGAAAGCTCTGG+CGG | 0.666246 | 3.4:+81199323 | MS.gene045098:CDS |
| AGGAGGTTTCCACTCGAGAG+GGG | 0.673102 | 3.4:+81198990 | MS.gene045098:CDS |
| AATCCTGTGGGCCACCATGG+AGG | 0.673179 | 3.4:-81199020 | None:intergenic |
| TCGAGTGGAAACCTCCTCTG+TGG | 0.673267 | 3.4:-81198984 | None:intergenic |
| ACTGTGTGCCACCACAGAGG+AGG | 0.682764 | 3.4:+81198973 | MS.gene045098:CDS |
| ACAGGATTAGAAAATTGGTG+GGG | 0.694629 | 3.4:+81199035 | MS.gene045098:CDS |
| AGAAATTGATCCTTATGGCG+CGG | 0.694845 | 3.4:+81198461 | MS.gene045098:CDS |
| GCCATAGGTAACTTACTCTG+CGG | 0.696224 | 3.4:-81199425 | None:intergenic |
| GGATGATCATGAATTCGAAG+CGG | 0.715431 | 3.4:+81199586 | MS.gene045098:CDS |
| AACACTGTGTGCCACCACAG+AGG | 0.743629 | 3.4:+81198970 | MS.gene045098:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAACATTTTAATACTATAA+TGG | + | chr3.4:81198869-81198888 | MS.gene045098:CDS | 15.0% |
| !!! | TTTCTTTGAACTTTTGTAAA+AGG | - | chr3.4:81198575-81198594 | None:intergenic | 20.0% |
| ! | AAGAGGAAGAAAAATCTATT+TGG | + | chr3.4:81199678-81199697 | MS.gene045098:CDS | 25.0% |
| ! | AGAAGATGTATGTAAGAATT+TGG | - | chr3.4:81198900-81198919 | None:intergenic | 25.0% |
| ! | AGACAATTTATGGCATTTAT+CGG | - | chr3.4:81199297-81199316 | None:intergenic | 25.0% |
| ! | AGAGGAAGAAAAATCTATTT+GGG | + | chr3.4:81199679-81199698 | MS.gene045098:CDS | 25.0% |
| ! | TAAAATGTTCATCTTCTTGA+AGG | - | chr3.4:81198860-81198879 | None:intergenic | 25.0% |
| !! | ATGGATTTTACTCAAAATCA+AGG | + | chr3.4:81199638-81199657 | MS.gene045098:CDS | 25.0% |
| !! | TGGATTTTACTCAAAATCAA+GGG | + | chr3.4:81199639-81199658 | MS.gene045098:CDS | 25.0% |
| !!! | GAATTGAAAATGTTGATGAT+TGG | + | chr3.4:81199498-81199517 | MS.gene045098:CDS | 25.0% |
| AAAACATATGTCACCTGATT+TGG | + | chr3.4:81199157-81199176 | MS.gene045098:CDS | 30.0% | |
| AAATTGTCTATTGTAGAGGA+AGG | + | chr3.4:81199308-81199327 | MS.gene045098:CDS | 30.0% | |
| AGATTCAGTACTCAAATACA+TGG | + | chr3.4:81198671-81198690 | MS.gene045098:CDS | 30.0% | |
| AGTGAAGAAATTGATCCTTA+TGG | + | chr3.4:81198456-81198475 | MS.gene045098:CDS | 30.0% | |
| CCATAAATTGTCTATTGTAG+AGG | + | chr3.4:81199304-81199323 | MS.gene045098:CDS | 30.0% | |
| CCTCTACAATAGACAATTTA+TGG | - | chr3.4:81199307-81199326 | None:intergenic | 30.0% | |
| GAGTTGAATCTTGTAAATCT+TGG | - | chr3.4:81198923-81198942 | None:intergenic | 30.0% | |
| GATTCCATAAACAAAACCTT+TGG | - | chr3.4:81198721-81198740 | None:intergenic | 30.0% | |
| GATTTACAAGATTCAACTCT+TGG | + | chr3.4:81198924-81198943 | MS.gene045098:CDS | 30.0% | |
| GGTAAAAGGTAATCATAACA+TGG | + | chr3.4:81199619-81199638 | MS.gene045098:CDS | 30.0% | |
| GTAATAACAGAAGTGAGAAA+AGG | + | chr3.4:81199363-81199382 | MS.gene045098:CDS | 30.0% | |
| TTCCTTAATTTCTCCAAATC+AGG | - | chr3.4:81199173-81199192 | None:intergenic | 30.0% | |
| TTTGGAGAAATTAAGGAAGT+TGG | + | chr3.4:81199175-81199194 | MS.gene045098:CDS | 30.0% | |
| ! | AAACTTTCCATGCCTTTTTA+AGG | - | chr3.4:81199118-81199137 | None:intergenic | 30.0% |
| !! | GTTGATGATTGGTTGAAAAT+GGG | + | chr3.4:81199509-81199528 | MS.gene045098:CDS | 30.0% |
| !! | TGTTGATGATTGGTTGAAAA+TGG | + | chr3.4:81199508-81199527 | MS.gene045098:CDS | 30.0% |
| !!! | AAAGCCAAAGGTTTTGTTTA+TGG | + | chr3.4:81198714-81198733 | MS.gene045098:CDS | 30.0% |
| !!! | AAGTTTGTTTTTGATGTTGG+TGG | + | chr3.4:81199386-81199405 | MS.gene045098:CDS | 30.0% |
| !!! | AGGAAGTTTGTTTTTGATGT+TGG | + | chr3.4:81199383-81199402 | MS.gene045098:CDS | 30.0% |
| AAGCAAATTAGGAACACGAT+GGG | - | chr3.4:81199465-81199484 | None:intergenic | 35.0% | |
| AATCAAGAAGAAGCTTTGCT+TGG | + | chr3.4:81199266-81199285 | MS.gene045098:CDS | 35.0% | |
| ACAGGATTAGAAAATTGGTG+GGG | + | chr3.4:81199035-81199054 | MS.gene045098:CDS | 35.0% | |
| AGGTCATGTGGTTTCTTATA+AGG | - | chr3.4:81199098-81199117 | None:intergenic | 35.0% | |
| CAAATACATGGCAAAGATCA+TGG | + | chr3.4:81198683-81198702 | MS.gene045098:CDS | 35.0% | |
| CACAGGATTAGAAAATTGGT+GGG | + | chr3.4:81199034-81199053 | MS.gene045098:CDS | 35.0% | |
| GAAACCACATGACCTTAAAA+AGG | + | chr3.4:81199103-81199122 | MS.gene045098:CDS | 35.0% | |
| GCATAATCTACATGATCAAG+AGG | + | chr3.4:81199661-81199680 | MS.gene045098:CDS | 35.0% | |
| GCATCACAATCAAGCAAATT+AGG | - | chr3.4:81199476-81199495 | None:intergenic | 35.0% | |
| GTTGTTAAACTCATAGCCAT+AGG | - | chr3.4:81199443-81199462 | None:intergenic | 35.0% | |
| TATGGAATCATCCCTGAAAA+GGG | + | chr3.4:81198732-81198751 | MS.gene045098:CDS | 35.0% | |
| TCATGTGGTTTCTTATAAGG+TGG | - | chr3.4:81199095-81199114 | None:intergenic | 35.0% | |
| TGAAACTGAAACAGAAAGTG+TGG | + | chr3.4:81198509-81198528 | MS.gene045098:CDS | 35.0% | |
| TGTTCATCTTCTTGAAGGAT+AGG | - | chr3.4:81198855-81198874 | None:intergenic | 35.0% | |
| TTATGGAATCATCCCTGAAA+AGG | + | chr3.4:81198731-81198750 | MS.gene045098:CDS | 35.0% | |
| TTGAAAATGGGAGAGATTGA+AGG | + | chr3.4:81199521-81199540 | MS.gene045098:CDS | 35.0% | |
| ! | CACCAATTTTCTAATCCTGT+GGG | - | chr3.4:81199035-81199054 | None:intergenic | 35.0% |
| !! | CAAAACAAGAAGCATCAAGA+AGG | + | chr3.4:81198628-81198647 | MS.gene045098:CDS | 35.0% |
| !! | CACCTGATTTGGAGAAATTA+AGG | + | chr3.4:81199168-81199187 | MS.gene045098:CDS | 35.0% |
| !!! | ATACTGGTTTACCCTTTTCA+GGG | - | chr3.4:81198746-81198765 | None:intergenic | 35.0% |
| AAAATGGGAGAGATTGAAGG+TGG | + | chr3.4:81199524-81199543 | MS.gene045098:CDS | 40.0% | |
| AAATGGGAGAGATTGAAGGT+GGG | + | chr3.4:81199525-81199544 | MS.gene045098:CDS | 40.0% | |
| AGAAATTGATCCTTATGGCG+CGG | + | chr3.4:81198461-81198480 | MS.gene045098:CDS | 40.0% | |
| ATCTACCTCTTCAGTTCCTT+CGG | - | chr3.4:81198490-81198509 | None:intergenic | 40.0% | |
| ATGGATGTATGCAAAGCCAA+AGG | + | chr3.4:81198702-81198721 | MS.gene045098:CDS | 40.0% | |
| CAAGCAAATTAGGAACACGA+TGG | - | chr3.4:81199466-81199485 | None:intergenic | 40.0% | |
| CACATGACCTTAAAAAGGCA+TGG | + | chr3.4:81199108-81199127 | MS.gene045098:CDS | 40.0% | |
| CCACAGGATTAGAAAATTGG+TGG | + | chr3.4:81199033-81199052 | MS.gene045098:CDS | 40.0% | |
| CTATCAGAAGAACCTGATAC+TGG | - | chr3.4:81198762-81198781 | None:intergenic | 40.0% | |
| GAAAAGGGTAAACCAGTATC+AGG | + | chr3.4:81198747-81198766 | MS.gene045098:CDS | 40.0% | |
| GAGATTGAAGGTGGGAAATT+TGG | + | chr3.4:81199533-81199552 | MS.gene045098:CDS | 40.0% | |
| GGATGATCATGAATTCGAAG+CGG | + | chr3.4:81199586-81199605 | MS.gene045098:CDS | 40.0% | |
| GTGGTGCACTTTGATCAAAA+CGG | - | chr3.4:81198812-81198831 | None:intergenic | 40.0% | |
| GTGGTTTCTTATAAGGTGGT+GGG | - | chr3.4:81199091-81199110 | None:intergenic | 40.0% | |
| TGAAGGTGGGAAATTTGGAT+GGG | + | chr3.4:81199538-81199557 | MS.gene045098:CDS | 40.0% | |
| TGTGGTTTCTTATAAGGTGG+TGG | - | chr3.4:81199092-81199111 | None:intergenic | 40.0% | |
| TTGAAGGTGGGAAATTTGGA+TGG | + | chr3.4:81199537-81199556 | MS.gene045098:CDS | 40.0% | |
| TTGGATGGGATGTTGAACAT+TGG | + | chr3.4:81199552-81199571 | MS.gene045098:CDS | 40.0% | |
| ! | AACAGAAAGTGTGGACTATG+AGG | + | chr3.4:81198518-81198537 | MS.gene045098:CDS | 40.0% |
| ! | CCACCAATTTTCTAATCCTG+TGG | - | chr3.4:81199036-81199055 | None:intergenic | 40.0% |
| ! | GGCATGGAAAGTTTCTGTTT+TGG | + | chr3.4:81199124-81199143 | MS.gene045098:CDS | 40.0% |
| ! | TGAACATTGGCTGAATGATG+TGG | + | chr3.4:81199565-81199584 | MS.gene045098:CDS | 40.0% |
| !!! | CATGCCTTTTTAAGGTCATG+TGG | - | chr3.4:81199110-81199129 | None:intergenic | 40.0% |
| !!! | GATACTGGTTTACCCTTTTC+AGG | - | chr3.4:81198747-81198766 | None:intergenic | 40.0% |
| !!! | TCTTGTTTTGCTTGTTGCTC+AGG | - | chr3.4:81198618-81198637 | None:intergenic | 40.0% |
| AGGAGCTGAAGAAACGTATG+TGG | + | chr3.4:81198538-81198557 | MS.gene045098:CDS | 45.0% | |
| ATTCGAAGCGGCAATCGAAA+TGG | + | chr3.4:81199598-81199617 | MS.gene045098:CDS | 45.0% | |
| CTTCTGATAGTTTACGCGAG+TGG | + | chr3.4:81198772-81198791 | MS.gene045098:CDS | 45.0% | |
| GAAAATTGGTGGGGTGAACA+AGG | + | chr3.4:81199044-81199063 | MS.gene045098:CDS | 45.0% | |
| GCCATAGGTAACTTACTCTG+CGG | - | chr3.4:81199428-81199447 | None:intergenic | 45.0% | |
| GCGGCAATCGAAATGGTAAA+AGG | + | chr3.4:81199605-81199624 | MS.gene045098:CDS | 45.0% | |
| GCTGAAGAAACGTATGTGGA+AGG | + | chr3.4:81198542-81198561 | MS.gene045098:CDS | 45.0% | |
| GGCCCACAGGATTAGAAAAT+TGG | + | chr3.4:81199030-81199049 | MS.gene045098:CDS | 45.0% | |
| TCCGCAGAGTAAGTTACCTA+TGG | + | chr3.4:81199424-81199443 | MS.gene045098:CDS | 45.0% | |
| ! | AAGTATTTTGCAACCGCGAG+TGG | - | chr3.4:81198831-81198850 | None:intergenic | 45.0% |
| ! | CTGCAAGAGATAGTGCTACT+TGG | + | chr3.4:81199231-81199250 | MS.gene045098:CDS | 45.0% |
| AGAGGGGAATTTCTCCTCCA+TGG | + | chr3.4:81199006-81199025 | MS.gene045098:CDS | 50.0% | |
| CTGATAGTTTACGCGAGTGG+TGG | + | chr3.4:81198775-81198794 | MS.gene045098:CDS | 50.0% | |
| GTAGAGGAAGGTGAAAGCTC+TGG | + | chr3.4:81199320-81199339 | MS.gene045098:CDS | 50.0% | |
| TGATCAAAGTGCACCACTCG+CGG | + | chr3.4:81198815-81198834 | MS.gene045098:CDS | 50.0% | |
| AACACTGTGTGCCACCACAG+AGG | + | chr3.4:81198970-81198989 | MS.gene045098:CDS | 55.0% | |
| AGAGGAGGTTTCCACTCGAG+AGG | + | chr3.4:81198988-81199007 | MS.gene045098:CDS | 55.0% | |
| AGGAGGTTTCCACTCGAGAG+GGG | + | chr3.4:81198990-81199009 | MS.gene045098:CDS | 55.0% | |
| AGTGGAAACCTCCTCTGTGG+TGG | - | chr3.4:81198984-81199003 | None:intergenic | 55.0% | |
| GAGGAGGTTTCCACTCGAGA+GGG | + | chr3.4:81198989-81199008 | MS.gene045098:CDS | 55.0% | |
| GGAAGCCGAAGGAACTGAAG+AGG | + | chr3.4:81198482-81198501 | MS.gene045098:CDS | 55.0% | |
| GGAGAAATTCCCCTCTCGAG+TGG | - | chr3.4:81199002-81199021 | None:intergenic | 55.0% | |
| GGGGAATTTCTCCTCCATGG+TGG | + | chr3.4:81199009-81199028 | MS.gene045098:CDS | 55.0% | |
| GGTCTGTTGGCCCAAGAACA+AGG | + | chr3.4:81199065-81199084 | MS.gene045098:CDS | 55.0% | |
| GTGGGGTGAACAAGGTCTGT+TGG | + | chr3.4:81199052-81199071 | MS.gene045098:CDS | 55.0% | |
| TCGAGTGGAAACCTCCTCTG+TGG | - | chr3.4:81198987-81199006 | None:intergenic | 55.0% | |
| TCTAATCCTGTGGGCCACCA+TGG | - | chr3.4:81199026-81199045 | None:intergenic | 55.0% | |
| ! | GAGGAAGGTGAAAGCTCTGG+CGG | + | chr3.4:81199323-81199342 | MS.gene045098:CDS | 55.0% |
| !! | AAGGTGGTGGGCCTTGTTCT+TGG | - | chr3.4:81199079-81199098 | None:intergenic | 55.0% |
| !! | AGGTGGTGGGCCTTGTTCTT+GGG | - | chr3.4:81199078-81199097 | None:intergenic | 55.0% |
| AATCCTGTGGGCCACCATGG+AGG | - | chr3.4:81199023-81199042 | None:intergenic | 60.0% | |
| ACTGTGTGCCACCACAGAGG+AGG | + | chr3.4:81198973-81198992 | MS.gene045098:CDS | 60.0% | |
| CCTTATGGCGCGGAAGCCGA+AGG | + | chr3.4:81198471-81198490 | MS.gene045098:CDS | 65.0% | |
| CCTTCGGCTTCCGCGCCATA+AGG | - | chr3.4:81198474-81198493 | None:intergenic | 65.0% | |
| TCTCCTCCATGGTGGCCCAC+AGG | + | chr3.4:81199017-81199036 | MS.gene045098:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 81198444 | 81199733 | 81198444 | ID=MS.gene045098 |
| chr3.4 | mRNA | 81198444 | 81199733 | 81198444 | ID=MS.gene045098.t1;Parent=MS.gene045098 |
| chr3.4 | exon | 81198444 | 81199733 | 81198444 | ID=MS.gene045098.t1.exon1;Parent=MS.gene045098.t1 |
| chr3.4 | CDS | 81198444 | 81199733 | 81198444 | ID=cds.MS.gene045098.t1;Parent=MS.gene045098.t1 |
| Gene Sequence |
| Protein sequence |
