Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045126.t1 | XP_024636003.1 | 92.6 | 216 | 16 | 0 | 1 | 216 | 10 | 225 | 1.20E-108 | 402.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045126.t1 | Q943I6 | 59.8 | 107 | 39 | 2 | 114 | 216 | 268 | 374 | 1.9e-33 | 144.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045126.t1 | A0A396IUG6 | 92.6 | 216 | 16 | 0 | 1 | 216 | 10 | 225 | 8.8e-109 | 402.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene045126.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045126.t1 | MTR_8g017210 | 34.259 | 108 | 64 | 2 | 109 | 216 | 72 | 172 | 8.68e-15 | 72.8 |
MS.gene045126.t1 | MTR_2g093960 | 33.628 | 113 | 69 | 3 | 104 | 216 | 37 | 143 | 8.68e-14 | 69.7 |
MS.gene045126.t1 | MTR_4g059870 | 31.858 | 113 | 71 | 3 | 104 | 216 | 43 | 149 | 2.14e-13 | 68.6 |
MS.gene045126.t1 | MTR_2g099990 | 33.333 | 108 | 65 | 2 | 109 | 216 | 56 | 156 | 1.01e-12 | 66.6 |
MS.gene045126.t1 | MTR_1g112270 | 31.132 | 106 | 66 | 2 | 111 | 216 | 56 | 154 | 1.62e-12 | 66.2 |
MS.gene045126.t1 | MTR_1g112270 | 31.132 | 106 | 66 | 2 | 111 | 216 | 67 | 165 | 1.80e-12 | 66.2 |
MS.gene045126.t1 | MTR_1g094115 | 32.075 | 106 | 65 | 2 | 111 | 216 | 59 | 157 | 2.64e-12 | 65.5 |
MS.gene045126.t1 | MTR_1g016010 | 32.407 | 108 | 67 | 2 | 109 | 216 | 51 | 152 | 3.06e-11 | 62.4 |
MS.gene045126.t1 | MTR_2g090745 | 33.019 | 106 | 64 | 3 | 111 | 216 | 19 | 117 | 5.25e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045126.t1 | AT5G22890 | 57.273 | 110 | 41 | 1 | 113 | 216 | 202 | 311 | 2.35e-42 | 147 |
MS.gene045126.t1 | AT1G34370 | 58.182 | 110 | 40 | 2 | 113 | 216 | 19 | 128 | 1.70e-40 | 140 |
MS.gene045126.t1 | AT1G34370 | 34.733 | 262 | 100 | 8 | 26 | 216 | 77 | 338 | 2.92e-40 | 144 |
MS.gene045126.t1 | AT1G34370 | 34.733 | 262 | 100 | 8 | 26 | 216 | 77 | 338 | 2.92e-40 | 144 |
MS.gene045126.t1 | AT5G66730 | 35.398 | 113 | 66 | 2 | 104 | 216 | 37 | 142 | 1.85e-15 | 74.7 |
MS.gene045126.t1 | AT5G44160 | 35.185 | 108 | 63 | 3 | 109 | 216 | 47 | 147 | 5.21e-15 | 73.6 |
MS.gene045126.t1 | AT5G44160 | 35.185 | 108 | 63 | 3 | 109 | 216 | 8 | 108 | 7.28e-15 | 72.8 |
MS.gene045126.t1 | AT1G03840 | 36.111 | 108 | 62 | 3 | 109 | 216 | 51 | 151 | 7.66e-15 | 73.2 |
MS.gene045126.t1 | AT1G03840 | 35.849 | 106 | 61 | 3 | 111 | 216 | 51 | 149 | 2.44e-14 | 71.6 |
MS.gene045126.t1 | AT5G60470 | 32.407 | 108 | 67 | 2 | 109 | 216 | 54 | 155 | 1.15e-13 | 69.7 |
MS.gene045126.t1 | AT5G60470 | 32.407 | 108 | 67 | 2 | 109 | 216 | 50 | 151 | 1.17e-13 | 69.3 |
MS.gene045126.t1 | AT3G45260 | 32.407 | 108 | 67 | 2 | 109 | 216 | 49 | 150 | 3.15e-13 | 68.2 |
MS.gene045126.t1 | AT3G45260 | 32.407 | 108 | 67 | 2 | 109 | 216 | 49 | 150 | 3.15e-13 | 68.2 |
MS.gene045126.t1 | AT5G03150 | 31.481 | 108 | 68 | 3 | 109 | 216 | 63 | 164 | 3.56e-13 | 68.2 |
MS.gene045126.t1 | AT5G60470 | 32.075 | 106 | 66 | 2 | 111 | 216 | 47 | 146 | 5.75e-13 | 67.4 |
MS.gene045126.t1 | AT1G55110 | 34.259 | 108 | 65 | 3 | 109 | 216 | 73 | 174 | 6.99e-13 | 67.4 |
MS.gene045126.t1 | AT1G55110 | 34.259 | 108 | 65 | 3 | 109 | 216 | 73 | 174 | 6.99e-13 | 67.4 |
MS.gene045126.t1 | AT1G55110 | 34.259 | 108 | 65 | 3 | 109 | 216 | 73 | 174 | 6.99e-13 | 67.4 |
MS.gene045126.t1 | AT2G02070 | 31.481 | 108 | 67 | 2 | 109 | 216 | 62 | 162 | 8.08e-13 | 67.0 |
MS.gene045126.t1 | AT2G02070 | 31.481 | 108 | 67 | 2 | 109 | 216 | 62 | 162 | 8.08e-13 | 67.0 |
MS.gene045126.t1 | AT4G02670 | 34.259 | 108 | 65 | 2 | 109 | 216 | 63 | 164 | 9.52e-13 | 66.6 |
MS.gene045126.t1 | AT4G02670 | 34.259 | 108 | 65 | 2 | 109 | 216 | 65 | 166 | 9.65e-13 | 66.6 |
MS.gene045126.t1 | AT3G50700 | 32.743 | 113 | 69 | 2 | 104 | 216 | 39 | 144 | 1.81e-12 | 65.9 |
MS.gene045126.t1 | AT1G25250 | 36.697 | 109 | 63 | 3 | 109 | 216 | 43 | 146 | 2.31e-12 | 65.5 |
MS.gene045126.t1 | AT3G13810 | 33.333 | 108 | 66 | 2 | 109 | 216 | 61 | 162 | 2.34e-12 | 65.9 |
MS.gene045126.t1 | AT3G13810 | 33.333 | 108 | 66 | 2 | 109 | 216 | 75 | 176 | 2.35e-12 | 65.9 |
MS.gene045126.t1 | AT3G13810 | 33.333 | 108 | 66 | 2 | 109 | 216 | 80 | 181 | 2.54e-12 | 65.9 |
MS.gene045126.t1 | AT3G13810 | 33.333 | 108 | 66 | 2 | 109 | 216 | 80 | 181 | 2.54e-12 | 65.9 |
MS.gene045126.t1 | AT1G14580 | 32.075 | 106 | 65 | 3 | 111 | 216 | 65 | 163 | 2.90e-12 | 65.5 |
MS.gene045126.t1 | AT1G14580 | 32.075 | 106 | 65 | 3 | 111 | 216 | 65 | 163 | 2.90e-12 | 65.5 |
MS.gene045126.t1 | AT1G34790 | 40.000 | 100 | 54 | 4 | 121 | 216 | 137 | 234 | 3.03e-12 | 64.7 |
MS.gene045126.t1 | AT1G25250 | 36.697 | 109 | 63 | 3 | 109 | 216 | 20 | 123 | 3.31e-12 | 65.1 |
MS.gene045126.t1 | AT1G14580 | 32.075 | 106 | 65 | 3 | 111 | 216 | 79 | 177 | 3.38e-12 | 65.1 |
MS.gene045126.t1 | AT1G51220 | 40.000 | 90 | 49 | 4 | 130 | 216 | 180 | 267 | 6.53e-12 | 63.9 |
MS.gene045126.t1 | AT2G01940 | 36.607 | 112 | 58 | 5 | 109 | 216 | 54 | 156 | 7.93e-12 | 64.3 |
MS.gene045126.t1 | AT2G01940 | 36.607 | 112 | 58 | 5 | 109 | 216 | 54 | 156 | 8.49e-12 | 63.9 |
MS.gene045126.t1 | AT2G02080 | 31.132 | 106 | 66 | 2 | 111 | 216 | 66 | 164 | 9.64e-12 | 63.9 |
MS.gene045126.t1 | AT2G02080 | 31.132 | 106 | 66 | 2 | 111 | 216 | 66 | 164 | 9.64e-12 | 63.9 |
MS.gene045126.t1 | AT2G02080 | 31.132 | 106 | 66 | 2 | 111 | 216 | 66 | 164 | 9.64e-12 | 63.9 |
MS.gene045126.t1 | AT2G02080 | 31.132 | 106 | 66 | 2 | 111 | 216 | 66 | 164 | 9.64e-12 | 63.9 |
MS.gene045126.t1 | AT1G08290 | 37.363 | 91 | 51 | 2 | 130 | 216 | 182 | 270 | 1.03e-11 | 63.5 |
MS.gene045126.t1 | AT3G13810 | 33.019 | 106 | 65 | 2 | 111 | 216 | 69 | 168 | 1.25e-11 | 63.5 |
MS.gene045126.t1 | AT3G13810 | 33.019 | 106 | 65 | 2 | 111 | 216 | 83 | 182 | 1.36e-11 | 63.5 |
MS.gene045126.t1 | AT1G68130 | 37.500 | 112 | 57 | 5 | 109 | 216 | 51 | 153 | 2.86e-11 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGTAGTGTGATGGGAATC+TGG | 0.233101 | 3.4:+80961422 | None:intergenic |
GGACGACGACGCACGGTTAA+AGG | 0.268870 | 3.4:+80960951 | None:intergenic |
TTTGCAGTGGATGAAGTATC+TGG | 0.279945 | 3.4:+80961402 | None:intergenic |
AACGCCGCCGCCCTCGTTCC+CGG | 0.371943 | 3.4:-80961200 | MS.gene045126:CDS |
GAGGGCGGCGGCGTTGACTA+TGG | 0.385405 | 3.4:+80961208 | None:intergenic |
GGTGGAGGACGGCAAAGATT+TGG | 0.403975 | 3.4:+80961234 | None:intergenic |
CGAAGCGGAACTTGAGGGTC+GGG | 0.417024 | 3.4:+80961365 | None:intergenic |
AAAGGCTTCGCTAAAGCTTC+CGG | 0.425013 | 3.4:+80960969 | None:intergenic |
CGGTTCTCGTGTCCGTTTGA+AGG | 0.428660 | 3.4:-80960924 | MS.gene045126:CDS |
GGAATCTTCCACGGCGGTGA+GGG | 0.432442 | 3.4:+80961130 | None:intergenic |
GAGCGTTGGTGGTGATGGAT+TGG | 0.440346 | 3.4:+80961291 | None:intergenic |
TGCCGCATATCTCGCAGAAA+TGG | 0.442862 | 3.4:+80961057 | None:intergenic |
GAAATTCAAAGCATTGAAAT+CGG | 0.454219 | 3.4:-80960877 | MS.gene045126:CDS |
TCCGCTTCGGAATCTATCCT+TGG | 0.455820 | 3.4:-80961351 | MS.gene045126:CDS |
TCAAGCGCGACGCGAATCTC+CGG | 0.460817 | 3.4:-80961028 | MS.gene045126:CDS |
GGCACCGGGAACGAGGGCGG+CGG | 0.463287 | 3.4:+80961196 | None:intergenic |
GATTCCGAAGCGGAACTTGA+GGG | 0.464978 | 3.4:+80961360 | None:intergenic |
GGAGGAGAAGACGGAGGCAC+CGG | 0.465619 | 3.4:+80961181 | None:intergenic |
AGCGTTGGTGGTGATGGATT+GGG | 0.484580 | 3.4:+80961292 | None:intergenic |
GAATCTTCCACGGCGGTGAG+GGG | 0.490348 | 3.4:+80961131 | None:intergenic |
GGGTAGTGTGATGGGAATCT+GGG | 0.490735 | 3.4:+80961423 | None:intergenic |
AAGTATCTGGGTAGTGTGAT+GGG | 0.491876 | 3.4:+80961415 | None:intergenic |
GAGCTCCACAATTTCGCAAT+CGG | 0.498272 | 3.4:+80961109 | None:intergenic |
GACGGAGGCACCGGGAACGA+GGG | 0.499392 | 3.4:+80961190 | None:intergenic |
GACAGGAGCGTTGGTGGTGA+TGG | 0.501841 | 3.4:+80961286 | None:intergenic |
CGTGTGCTCTCATGTGCATC+CGG | 0.503672 | 3.4:+80961009 | None:intergenic |
GTGTGATGGGAATCTGGGTT+CGG | 0.507152 | 3.4:+80961428 | None:intergenic |
TGGATTGGGACAGGAAGGTT+CGG | 0.516488 | 3.4:+80961306 | None:intergenic |
TGGTGGTGATGGATTGGGAC+AGG | 0.519067 | 3.4:+80961297 | None:intergenic |
AATCTTCCACGGCGGTGAGG+GGG | 0.520341 | 3.4:+80961132 | None:intergenic |
TTTCTGTTACATCCTTCAAA+CGG | 0.521111 | 3.4:+80960912 | None:intergenic |
AGATTCCGATTGCGAAATTG+TGG | 0.528555 | 3.4:-80961114 | MS.gene045126:CDS |
AGATTACACGAATACATCTT+CGG | 0.537959 | 3.4:+80960816 | None:intergenic |
TTCTGCGAGATATGCGGCAA+AGG | 0.541688 | 3.4:-80961053 | MS.gene045126:CDS |
GTTAATTGATCATTGCTGAC+AGG | 0.542229 | 3.4:+80961269 | None:intergenic |
GGAGGCACCGGGAACGAGGG+CGG | 0.542744 | 3.4:+80961193 | None:intergenic |
GAGGAGAAGACGGAGGCACC+GGG | 0.543680 | 3.4:+80961182 | None:intergenic |
CCGACCCTCAAGTTCCGCTT+CGG | 0.543888 | 3.4:-80961364 | MS.gene045126:CDS |
GAGGACGGCAAAGATTTGGT+TGG | 0.549075 | 3.4:+80961238 | None:intergenic |
AGACGGAGGCACCGGGAACG+AGG | 0.549677 | 3.4:+80961189 | None:intergenic |
GTGTGAAGACTCATTTCAAG+AGG | 0.550074 | 3.4:-80960848 | MS.gene045126:CDS |
GAAGCGGAACTTGAGGGTCG+GGG | 0.550186 | 3.4:+80961366 | None:intergenic |
ATTGCTGACAGGAGCGTTGG+TGG | 0.551289 | 3.4:+80961280 | None:intergenic |
CGGAATCTTCCACGGCGGTG+AGG | 0.555882 | 3.4:+80961129 | None:intergenic |
AGATTCCGAAGCGGAACTTG+AGG | 0.557075 | 3.4:+80961359 | None:intergenic |
GGCAAAGATTTGGTTGGAGA+CGG | 0.557743 | 3.4:+80961244 | None:intergenic |
AAGCGGAACTTGAGGGTCGG+GGG | 0.565688 | 3.4:+80961367 | None:intergenic |
GAAGTATCTGGGTAGTGTGA+TGG | 0.565886 | 3.4:+80961414 | None:intergenic |
AAAGGTGATGGAGGAGAAGA+CGG | 0.568206 | 3.4:+80961172 | None:intergenic |
AATTGTGGAGCTCGACGCCA+TGG | 0.568707 | 3.4:-80961099 | MS.gene045126:CDS |
ATCATTGCTGACAGGAGCGT+TGG | 0.573157 | 3.4:+80961277 | None:intergenic |
TTGCAGTGGATGAAGTATCT+GGG | 0.575606 | 3.4:+80961403 | None:intergenic |
CGGATGCACATGAGAGCACA+CGG | 0.577893 | 3.4:-80961008 | MS.gene045126:CDS |
AACGGACACGAGAACCGTGT+TGG | 0.584128 | 3.4:+80960930 | None:intergenic |
TTCGCAATCGGAATCTTCCA+CGG | 0.585611 | 3.4:+80961121 | None:intergenic |
CGGCGGCGTTGACTATGGTA+TGG | 0.588110 | 3.4:+80961213 | None:intergenic |
GTTGTTGTTGACTGAATCAA+AGG | 0.592805 | 3.4:+80961154 | None:intergenic |
GGTGATGGATTGGGACAGGA+AGG | 0.593615 | 3.4:+80961301 | None:intergenic |
ATGTTCAGCTAGCAATTCCA+TGG | 0.594022 | 3.4:+80961082 | None:intergenic |
CCGAAGCGGAACTTGAGGGT+CGG | 0.601485 | 3.4:+80961364 | None:intergenic |
CCGTGCGTCGTCGTCCAACA+CGG | 0.603358 | 3.4:-80960944 | MS.gene045126:CDS |
GACTATGGTATGGTGGAGGA+CGG | 0.605416 | 3.4:+80961223 | None:intergenic |
CCGTGTTGGACGACGACGCA+CGG | 0.605601 | 3.4:+80960944 | None:intergenic |
CTCCATTTCTGCGAGATATG+CGG | 0.627013 | 3.4:-80961059 | MS.gene045126:CDS |
AAAGATTTGGTTGGAGACGG+CGG | 0.627067 | 3.4:+80961247 | None:intergenic |
GTTGACTGAATCAAAGGTGA+TGG | 0.628225 | 3.4:+80961160 | None:intergenic |
CGGCGTTGACTATGGTATGG+TGG | 0.628323 | 3.4:+80961216 | None:intergenic |
CGTTGACTATGGTATGGTGG+AGG | 0.634509 | 3.4:+80961219 | None:intergenic |
GACTGAATCAAAGGTGATGG+AGG | 0.635823 | 3.4:+80961163 | None:intergenic |
ATCGATGCTTGTCTGAACCA+AGG | 0.654173 | 3.4:+80961334 | None:intergenic |
CGGGAATCAGTTCAAGACGC+CGG | 0.682583 | 3.4:-80960988 | MS.gene045126:CDS |
GGATGCACATGAGAGCACAC+GGG | 0.701290 | 3.4:-80961007 | MS.gene045126:CDS |
ACCAAGGATAGATTCCGAAG+CGG | 0.716599 | 3.4:+80961350 | None:intergenic |
GCAATCGGAATCTTCCACGG+CGG | 0.729614 | 3.4:+80961124 | None:intergenic |
GGTGATGGAGGAGAAGACGG+AGG | 0.738851 | 3.4:+80961175 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAAATTCAAAGCATTGAAAT+CGG | - | chr3.4:80961371-80961390 | MS.gene045126:CDS | 25.0% |
AGATTACACGAATACATCTT+CGG | + | chr3.4:80961435-80961454 | None:intergenic | 30.0% | |
TTTCTGTTACATCCTTCAAA+CGG | + | chr3.4:80961339-80961358 | None:intergenic | 30.0% | |
GTTAATTGATCATTGCTGAC+AGG | + | chr3.4:80960982-80961001 | None:intergenic | 35.0% | |
! | GTATTAGTTGGATTTTGCAG+TGG | + | chr3.4:80960862-80960881 | None:intergenic | 35.0% |
! | GTTGTTGTTGACTGAATCAA+AGG | + | chr3.4:80961097-80961116 | None:intergenic | 35.0% |
AAGTATCTGGGTAGTGTGAT+GGG | + | chr3.4:80960836-80960855 | None:intergenic | 40.0% | |
AGATTCCGATTGCGAAATTG+TGG | - | chr3.4:80961134-80961153 | MS.gene045126:CDS | 40.0% | |
ATGTTCAGCTAGCAATTCCA+TGG | + | chr3.4:80961169-80961188 | None:intergenic | 40.0% | |
GTGTGAAGACTCATTTCAAG+AGG | - | chr3.4:80961400-80961419 | MS.gene045126:CDS | 40.0% | |
GTTGACTGAATCAAAGGTGA+TGG | + | chr3.4:80961091-80961110 | None:intergenic | 40.0% | |
! | TTGCAGTGGATGAAGTATCT+GGG | + | chr3.4:80960848-80960867 | None:intergenic | 40.0% |
! | TTTGCAGTGGATGAAGTATC+TGG | + | chr3.4:80960849-80960868 | None:intergenic | 40.0% |
AAAGGCTTCGCTAAAGCTTC+CGG | + | chr3.4:80961282-80961301 | None:intergenic | 45.0% | |
ACCAAGGATAGATTCCGAAG+CGG | + | chr3.4:80960901-80960920 | None:intergenic | 45.0% | |
ATCGATGCTTGTCTGAACCA+AGG | + | chr3.4:80960917-80960936 | None:intergenic | 45.0% | |
CTCCATTTCTGCGAGATATG+CGG | - | chr3.4:80961189-80961208 | MS.gene045126:CDS | 45.0% | |
GAGCTCCACAATTTCGCAAT+CGG | + | chr3.4:80961142-80961161 | None:intergenic | 45.0% | |
TTCGCAATCGGAATCTTCCA+CGG | + | chr3.4:80961130-80961149 | None:intergenic | 45.0% | |
! | AAAGATTTGGTTGGAGACGG+CGG | + | chr3.4:80961004-80961023 | None:intergenic | 45.0% |
! | GAAGTATCTGGGTAGTGTGA+TGG | + | chr3.4:80960837-80960856 | None:intergenic | 45.0% |
! | GACTGAATCAAAGGTGATGG+AGG | + | chr3.4:80961088-80961107 | None:intergenic | 45.0% |
! | GGCAAAGATTTGGTTGGAGA+CGG | + | chr3.4:80961007-80961026 | None:intergenic | 45.0% |
!! | AAAGGTGATGGAGGAGAAGA+CGG | + | chr3.4:80961079-80961098 | None:intergenic | 45.0% |
AGATTCCGAAGCGGAACTTG+AGG | + | chr3.4:80960892-80960911 | None:intergenic | 50.0% | |
GATTCCGAAGCGGAACTTGA+GGG | + | chr3.4:80960891-80960910 | None:intergenic | 50.0% | |
TCCGCTTCGGAATCTATCCT+TGG | - | chr3.4:80960897-80960916 | MS.gene045126:CDS | 50.0% | |
TGCCGCATATCTCGCAGAAA+TGG | + | chr3.4:80961194-80961213 | None:intergenic | 50.0% | |
TTCTGCGAGATATGCGGCAA+AGG | - | chr3.4:80961195-80961214 | MS.gene045126:CDS | 50.0% | |
! | ATCATTGCTGACAGGAGCGT+TGG | + | chr3.4:80960974-80960993 | None:intergenic | 50.0% |
! | CGTTGACTATGGTATGGTGG+AGG | + | chr3.4:80961032-80961051 | None:intergenic | 50.0% |
! | GACTATGGTATGGTGGAGGA+CGG | + | chr3.4:80961028-80961047 | None:intergenic | 50.0% |
! | GAGGACGGCAAAGATTTGGT+TGG | + | chr3.4:80961013-80961032 | None:intergenic | 50.0% |
! | GGGTAGTGTGATGGGAATCT+GGG | + | chr3.4:80960828-80960847 | None:intergenic | 50.0% |
! | GTGTGATGGGAATCTGGGTT+CGG | + | chr3.4:80960823-80960842 | None:intergenic | 50.0% |
! | TGGATTGGGACAGGAAGGTT+CGG | + | chr3.4:80960945-80960964 | None:intergenic | 50.0% |
! | TGGGTAGTGTGATGGGAATC+TGG | + | chr3.4:80960829-80960848 | None:intergenic | 50.0% |
!! | AGCGTTGGTGGTGATGGATT+GGG | + | chr3.4:80960959-80960978 | None:intergenic | 50.0% |
AACGGACACGAGAACCGTGT+TGG | + | chr3.4:80961321-80961340 | None:intergenic | 55.0% | |
AATTGTGGAGCTCGACGCCA+TGG | - | chr3.4:80961149-80961168 | MS.gene045126:CDS | 55.0% | |
CGGGAATCAGTTCAAGACGC+CGG | - | chr3.4:80961260-80961279 | MS.gene045126:CDS | 55.0% | |
CGGTTCTCGTGTCCGTTTGA+AGG | - | chr3.4:80961324-80961343 | MS.gene045126:CDS | 55.0% | |
CGTGTGCTCTCATGTGCATC+CGG | + | chr3.4:80961242-80961261 | None:intergenic | 55.0% | |
GCAATCGGAATCTTCCACGG+CGG | + | chr3.4:80961127-80961146 | None:intergenic | 55.0% | |
GGTGGAGGACGGCAAAGATT+TGG | + | chr3.4:80961017-80961036 | None:intergenic | 55.0% | |
! | CGGATGCACATGAGAGCACA+CGG | - | chr3.4:80961240-80961259 | MS.gene045126:CDS | 55.0% |
! | GGATGCACATGAGAGCACAC+GGG | - | chr3.4:80961241-80961260 | MS.gene045126:CDS | 55.0% |
!! | ATTGCTGACAGGAGCGTTGG+TGG | + | chr3.4:80960971-80960990 | None:intergenic | 55.0% |
!! | CGGCGTTGACTATGGTATGG+TGG | + | chr3.4:80961035-80961054 | None:intergenic | 55.0% |
!! | GAGCGTTGGTGGTGATGGAT+TGG | + | chr3.4:80960960-80960979 | None:intergenic | 55.0% |
!! | GGTGATGGATTGGGACAGGA+AGG | + | chr3.4:80960950-80960969 | None:intergenic | 55.0% |
!! | TGAGGGTCGGGGGTATTAGT+TGG | + | chr3.4:80960874-80960893 | None:intergenic | 55.0% |
!! | TGGTGGTGATGGATTGGGAC+AGG | + | chr3.4:80960954-80960973 | None:intergenic | 55.0% |
AAGCGGAACTTGAGGGTCGG+GGG | + | chr3.4:80960884-80960903 | None:intergenic | 60.0% | |
AATCTTCCACGGCGGTGAGG+GGG | + | chr3.4:80961119-80961138 | None:intergenic | 60.0% | |
CCGAAGCGGAACTTGAGGGT+CGG | + | chr3.4:80960887-80960906 | None:intergenic | 60.0% | |
CCGACCCTCAAGTTCCGCTT+CGG | - | chr3.4:80960884-80960903 | MS.gene045126:CDS | 60.0% | |
CGAAGCGGAACTTGAGGGTC+GGG | + | chr3.4:80960886-80960905 | None:intergenic | 60.0% | |
GAAGCGGAACTTGAGGGTCG+GGG | + | chr3.4:80960885-80960904 | None:intergenic | 60.0% | |
GAATCTTCCACGGCGGTGAG+GGG | + | chr3.4:80961120-80961139 | None:intergenic | 60.0% | |
GGAATCTTCCACGGCGGTGA+GGG | + | chr3.4:80961121-80961140 | None:intergenic | 60.0% | |
GGACGACGACGCACGGTTAA+AGG | + | chr3.4:80961300-80961319 | None:intergenic | 60.0% | |
TCAAGCGCGACGCGAATCTC+CGG | - | chr3.4:80961220-80961239 | MS.gene045126:CDS | 60.0% | |
!! | CGGCGGCGTTGACTATGGTA+TGG | + | chr3.4:80961038-80961057 | None:intergenic | 60.0% |
!! | GACAGGAGCGTTGGTGGTGA+TGG | + | chr3.4:80960965-80960984 | None:intergenic | 60.0% |
!! | GGTGATGGAGGAGAAGACGG+AGG | + | chr3.4:80961076-80961095 | None:intergenic | 60.0% |
CCGTGCGTCGTCGTCCAACA+CGG | - | chr3.4:80961304-80961323 | MS.gene045126:CDS | 65.0% | |
CCGTGTTGGACGACGACGCA+CGG | + | chr3.4:80961307-80961326 | None:intergenic | 65.0% | |
CGGAATCTTCCACGGCGGTG+AGG | + | chr3.4:80961122-80961141 | None:intergenic | 65.0% | |
! | GGAGGAGAAGACGGAGGCAC+CGG | + | chr3.4:80961070-80961089 | None:intergenic | 65.0% |
!! | GAGGAGAAGACGGAGGCACC+GGG | + | chr3.4:80961069-80961088 | None:intergenic | 65.0% |
CAACAACCCCCTCACCGCCG+TGG | - | chr3.4:80961110-80961129 | MS.gene045126:CDS | 70.0% | |
!! | AGACGGAGGCACCGGGAACG+AGG | + | chr3.4:80961062-80961081 | None:intergenic | 70.0% |
!! | GACGGAGGCACCGGGAACGA+GGG | + | chr3.4:80961061-80961080 | None:intergenic | 70.0% |
!! | GAGGGCGGCGGCGTTGACTA+TGG | + | chr3.4:80961043-80961062 | None:intergenic | 70.0% |
AACGCCGCCGCCCTCGTTCC+CGG | - | chr3.4:80961048-80961067 | MS.gene045126:CDS | 75.0% | |
!! | GGAGGCACCGGGAACGAGGG+CGG | + | chr3.4:80961058-80961077 | None:intergenic | 75.0% |
!! | GGCACCGGGAACGAGGGCGG+CGG | + | chr3.4:80961055-80961074 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 80960811 | 80961459 | 80960811 | ID=MS.gene045126 |
chr3.4 | mRNA | 80960811 | 80961459 | 80960811 | ID=MS.gene045126.t1;Parent=MS.gene045126 |
chr3.4 | exon | 80960811 | 80961459 | 80960811 | ID=MS.gene045126.t1.exon1;Parent=MS.gene045126.t1 |
chr3.4 | CDS | 80960811 | 80961459 | 80960811 | ID=cds.MS.gene045126.t1;Parent=MS.gene045126.t1 |
Gene Sequence |
Protein sequence |