AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045127

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045127.t1 MTR_2g093960 35.632 174 96 5 104 268 37 203 4.02e-27 110
MS.gene045127.t1 MTR_8g017210 35.897 156 92 3 104 259 67 214 9.54e-27 110
MS.gene045127.t1 MTR_4g059870 35.897 156 93 4 104 259 43 191 3.83e-26 108
MS.gene045127.t1 MTR_2g099990 35.256 156 93 3 104 259 51 198 4.73e-25 105
MS.gene045127.t1 MTR_1g112270 34.228 149 90 3 111 259 56 196 1.20e-24 104
MS.gene045127.t1 MTR_1g112270 34.228 149 90 3 111 259 67 207 1.37e-24 104
MS.gene045127.t1 MTR_1g094115 34.899 149 89 3 111 259 59 199 2.92e-24 103
MS.gene045127.t1 MTR_1g016010 35.099 151 91 3 109 259 51 194 3.04e-23 99.8
MS.gene045127.t1 MTR_2g090745 35.570 149 88 4 111 259 19 159 2.61e-22 97.1
MS.gene045127.t1 MTR_2g099990 36.496 137 79 3 123 259 1 129 2.77e-22 96.7
MS.gene045127.t1 MTR_1g094115 35.878 131 76 3 129 259 60 182 6.52e-21 93.6
MS.gene045127.t1 MTR_1g093095 35.220 159 86 6 130 278 117 268 3.01e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045127.t1 AT1G34370 59.394 165 61 2 113 271 19 183 3.81e-70 220
MS.gene045127.t1 AT1G34370 39.432 317 121 8 26 271 77 393 2.37e-69 224
MS.gene045127.t1 AT1G34370 39.432 317 121 8 26 271 77 393 2.37e-69 224
MS.gene045127.t1 AT5G22890 58.125 160 61 1 113 266 202 361 2.84e-66 213
MS.gene045127.t1 AT5G66730 37.821 156 89 3 104 259 37 184 1.47e-27 112
MS.gene045127.t1 AT5G44160 35.897 156 92 4 104 259 42 189 4.41e-27 110
MS.gene045127.t1 AT5G44160 36.424 151 88 4 109 259 8 150 7.45e-27 109
MS.gene045127.t1 AT1G03840 37.086 151 87 4 109 259 51 193 1.29e-26 110
MS.gene045127.t1 AT3G45260 35.762 151 90 3 109 259 49 192 4.39e-26 107
MS.gene045127.t1 AT3G45260 35.762 151 90 3 109 259 49 192 4.39e-26 107
MS.gene045127.t1 AT1G03840 36.913 149 86 4 111 259 51 191 4.41e-26 108
MS.gene045127.t1 AT5G03150 35.065 154 93 4 106 259 60 206 5.53e-26 108
MS.gene045127.t1 AT5G60470 35.811 148 88 3 109 256 50 190 5.60e-26 107
MS.gene045127.t1 AT5G60470 35.811 148 88 3 109 256 54 194 5.96e-26 107
MS.gene045127.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene045127.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene045127.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene045127.t1 AT5G60470 35.616 146 87 3 111 256 47 185 3.49e-25 105
MS.gene045127.t1 AT3G50700 35.897 156 92 3 104 259 39 186 1.28e-24 103
MS.gene045127.t1 AT3G13810 34.503 171 98 4 109 279 80 236 1.66e-24 103
MS.gene045127.t1 AT3G13810 34.503 171 98 4 109 279 80 236 1.66e-24 103
MS.gene045127.t1 AT3G13810 34.503 171 98 4 109 279 75 231 1.78e-24 103
MS.gene045127.t1 AT3G13810 34.503 171 98 4 109 279 61 217 1.84e-24 103
MS.gene045127.t1 AT2G02070 33.962 159 95 4 101 259 56 204 2.37e-24 103
MS.gene045127.t1 AT2G02070 33.962 159 95 4 101 259 56 204 2.37e-24 103
MS.gene045127.t1 AT1G14580 29.949 197 115 6 78 259 17 205 3.97e-24 102
MS.gene045127.t1 AT1G14580 29.949 197 115 6 78 259 17 205 3.97e-24 102
MS.gene045127.t1 AT1G14580 29.949 197 115 6 78 259 31 219 5.30e-24 102
MS.gene045127.t1 AT4G02670 36.424 151 89 3 109 259 65 208 5.91e-24 101
MS.gene045127.t1 AT4G02670 36.424 151 89 3 109 259 63 206 6.02e-24 101
MS.gene045127.t1 AT3G13810 34.320 169 97 4 111 279 83 237 1.05e-23 101
MS.gene045127.t1 AT3G13810 34.320 169 97 4 111 279 69 223 1.18e-23 101
MS.gene045127.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene045127.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene045127.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene045127.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene045127.t1 AT1G51220 36.747 166 89 8 130 291 180 333 1.60e-22 96.7
MS.gene045127.t1 AT3G20880 35.220 159 95 6 130 284 258 412 2.42e-22 97.1
MS.gene045127.t1 AT1G25250 36.913 149 87 4 109 256 43 185 1.13e-21 94.7
MS.gene045127.t1 AT1G25250 36.913 149 87 4 109 256 20 162 1.28e-21 94.4
MS.gene045127.t1 AT1G34790 37.725 167 94 8 121 281 137 299 1.57e-21 93.2
MS.gene045127.t1 AT2G01940 36.842 152 82 6 109 256 54 195 5.46e-21 93.6
MS.gene045127.t1 AT1G08290 34.375 160 94 6 130 282 182 337 1.28e-20 91.3
MS.gene045127.t1 AT1G68130 37.500 152 81 6 109 256 51 192 1.54e-20 92.0
MS.gene045127.t1 AT2G02080 32.847 137 84 3 123 259 1 129 3.50e-20 90.9
MS.gene045127.t1 AT2G02080 32.847 137 84 3 123 259 1 129 3.50e-20 90.9
MS.gene045127.t1 AT3G57670 31.658 199 118 7 109 293 189 383 2.11e-19 88.2
MS.gene045127.t1 AT1G13290 33.333 174 107 6 95 263 69 238 7.56e-19 85.9
MS.gene045127.t1 AT2G01940 37.143 140 74 6 109 244 54 183 2.44e-18 85.9

Find 97 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGCTTTGATGAAATTT+TGG 0.092891 3.1:-70099627 MS.gene045127:CDS
GAAGAGTTCTTTCATGATTT+TGG 0.097161 3.1:-70099662 MS.gene045127:CDS
TGGGTAGTGTGATGGGAATC+TGG 0.233101 3.1:+70100547 None:intergenic
GGACGACGACGCACGGTTAA+AGG 0.268870 3.1:+70100076 None:intergenic
TTTGCAGTGGATGAAGTATC+TGG 0.279945 3.1:+70100527 None:intergenic
GAAGAATTATTCGATGCTTT+CGG 0.349953 3.1:-70099909 MS.gene045127:CDS
TCGAGTAAAGATGATGAAAT+TGG 0.358576 3.1:-70099692 MS.gene045127:CDS
AACGCCGCCGCCCTCGTTCC+CGG 0.371943 3.1:-70100325 MS.gene045127:CDS
TCTAGGAAGGATAAGTTGTT+TGG 0.372634 3.1:-70099821 MS.gene045127:CDS
GAGGGCGGCGGCGTTGACTA+TGG 0.385405 3.1:+70100333 None:intergenic
GGTGGAGGACGGCAAAGATT+TGG 0.403975 3.1:+70100359 None:intergenic
TGTTGGAAGATGAGGAGAAA+GGG 0.407870 3.1:-70099760 MS.gene045127:CDS
GGACATGTTGCTTTGTTTGA+GGG 0.416752 3.1:-70099800 MS.gene045127:CDS
CGAAGCGGAACTTGAGGGTC+GGG 0.417024 3.1:+70100490 None:intergenic
AAAGGCTTCGCTAAAGCTTC+CGG 0.425013 3.1:+70100094 None:intergenic
CGGTTCTCGTGTCCGTTTGA+AGG 0.428660 3.1:-70100049 MS.gene045127:CDS
GGAATCTTCCACGGCGGTGA+GGG 0.432442 3.1:+70100255 None:intergenic
GAGCGTTGGTGGTGATGGAT+TGG 0.440346 3.1:+70100416 None:intergenic
TGCCGCATATCTCGCAGAAA+TGG 0.442862 3.1:+70100182 None:intergenic
GAATGAAGATCCTATGGAAA+TGG 0.446675 3.1:-70099717 MS.gene045127:CDS
TGGACATGTTGCTTTGTTTG+AGG 0.450086 3.1:-70099801 MS.gene045127:CDS
GAAATTCAAAGCATTGAAAT+CGG 0.454219 3.1:-70100002 MS.gene045127:CDS
TCCGCTTCGGAATCTATCCT+TGG 0.455820 3.1:-70100476 MS.gene045127:CDS
TCAAGCGCGACGCGAATCTC+CGG 0.460817 3.1:-70100153 MS.gene045127:CDS
CGGATTTGAAGAGTCATATG+AGG 0.460927 3.1:-70099889 MS.gene045127:CDS
GGCACCGGGAACGAGGGCGG+CGG 0.463287 3.1:+70100321 None:intergenic
GATTCCGAAGCGGAACTTGA+GGG 0.464978 3.1:+70100485 None:intergenic
GGAGGAGAAGACGGAGGCAC+CGG 0.465619 3.1:+70100306 None:intergenic
AGCGTTGGTGGTGATGGATT+GGG 0.484580 3.1:+70100417 None:intergenic
GAATCTTCCACGGCGGTGAG+GGG 0.490348 3.1:+70100256 None:intergenic
GGGTAGTGTGATGGGAATCT+GGG 0.490735 3.1:+70100548 None:intergenic
AAGTATCTGGGTAGTGTGAT+GGG 0.491876 3.1:+70100540 None:intergenic
GAGCTCCACAATTTCGCAAT+CGG 0.498272 3.1:+70100234 None:intergenic
GACGGAGGCACCGGGAACGA+GGG 0.499392 3.1:+70100315 None:intergenic
CTAAGTGGAAGTGTTCTTGT+GGG 0.500097 3.1:-70099853 MS.gene045127:CDS
GACAGGAGCGTTGGTGGTGA+TGG 0.501841 3.1:+70100411 None:intergenic
CGTGTGCTCTCATGTGCATC+CGG 0.503672 3.1:+70100134 None:intergenic
TTACTCGATGCCATTTCCAT+AGG 0.504832 3.1:+70099707 None:intergenic
GTGTGATGGGAATCTGGGTT+CGG 0.507152 3.1:+70100553 None:intergenic
TGGATTGGGACAGGAAGGTT+CGG 0.516488 3.1:+70100431 None:intergenic
TGGTGGTGATGGATTGGGAC+AGG 0.519067 3.1:+70100422 None:intergenic
AATCTTCCACGGCGGTGAGG+GGG 0.520341 3.1:+70100257 None:intergenic
TTTCTGTTACATCCTTCAAA+CGG 0.521111 3.1:+70100037 None:intergenic
AGATTCCGATTGCGAAATTG+TGG 0.528555 3.1:-70100239 MS.gene045127:CDS
TGAGGAGAATGAAGATCCTA+TGG 0.533388 3.1:-70099723 MS.gene045127:CDS
TAAAGATGATGAAATTGGTA+TGG 0.536892 3.1:-70099687 MS.gene045127:CDS
AGATTACACGAATACATCTT+CGG 0.537959 3.1:+70099941 None:intergenic
TTCTGCGAGATATGCGGCAA+AGG 0.541688 3.1:-70100178 MS.gene045127:CDS
GTTAATTGATCATTGCTGAC+AGG 0.542229 3.1:+70100394 None:intergenic
GGAGGCACCGGGAACGAGGG+CGG 0.542744 3.1:+70100318 None:intergenic
GAGGAGAAGACGGAGGCACC+GGG 0.543680 3.1:+70100307 None:intergenic
CCGACCCTCAAGTTCCGCTT+CGG 0.543888 3.1:-70100489 MS.gene045127:CDS
GAGGACGGCAAAGATTTGGT+TGG 0.549075 3.1:+70100363 None:intergenic
AGACGGAGGCACCGGGAACG+AGG 0.549677 3.1:+70100314 None:intergenic
GTGTGAAGACTCATTTCAAG+AGG 0.550074 3.1:-70099973 MS.gene045127:CDS
GAAGCGGAACTTGAGGGTCG+GGG 0.550186 3.1:+70100491 None:intergenic
ATTGCTGACAGGAGCGTTGG+TGG 0.551289 3.1:+70100405 None:intergenic
CGGAATCTTCCACGGCGGTG+AGG 0.555882 3.1:+70100254 None:intergenic
AGATTCCGAAGCGGAACTTG+AGG 0.557075 3.1:+70100484 None:intergenic
GGCAAAGATTTGGTTGGAGA+CGG 0.557743 3.1:+70100369 None:intergenic
TCATCTTCCAACATAACAGC+AGG 0.563199 3.1:+70099770 None:intergenic
AGGGAAGCAAGTTGTTGCTG+AGG 0.563220 3.1:-70099741 MS.gene045127:CDS
AAGCGGAACTTGAGGGTCGG+GGG 0.565688 3.1:+70100492 None:intergenic
GAAGTATCTGGGTAGTGTGA+TGG 0.565886 3.1:+70100539 None:intergenic
AAAGGTGATGGAGGAGAAGA+CGG 0.568206 3.1:+70100297 None:intergenic
AATTGTGGAGCTCGACGCCA+TGG 0.568707 3.1:-70100224 MS.gene045127:CDS
ATCATTGCTGACAGGAGCGT+TGG 0.573157 3.1:+70100402 None:intergenic
ATGTTGGAAGATGAGGAGAA+AGG 0.574571 3.1:-70099761 MS.gene045127:CDS
TGCTGTTATGTTGGAAGATG+AGG 0.574860 3.1:-70099768 MS.gene045127:CDS
TCATATGCCTGCTGTTATGT+TGG 0.575110 3.1:-70099777 MS.gene045127:CDS
TTGCAGTGGATGAAGTATCT+GGG 0.575606 3.1:+70100528 None:intergenic
CGGATGCACATGAGAGCACA+CGG 0.577893 3.1:-70100133 MS.gene045127:CDS
AACGGACACGAGAACCGTGT+TGG 0.584128 3.1:+70100055 None:intergenic
TTCGCAATCGGAATCTTCCA+CGG 0.585611 3.1:+70100246 None:intergenic
CGGCGGCGTTGACTATGGTA+TGG 0.588110 3.1:+70100338 None:intergenic
GGCAATGTGGTGAGTCTAAG+TGG 0.591829 3.1:-70099868 MS.gene045127:CDS
GTTGTTGTTGACTGAATCAA+AGG 0.592805 3.1:+70100279 None:intergenic
GGTGATGGATTGGGACAGGA+AGG 0.593615 3.1:+70100426 None:intergenic
ATGTTCAGCTAGCAATTCCA+TGG 0.594022 3.1:+70100207 None:intergenic
CCGAAGCGGAACTTGAGGGT+CGG 0.601485 3.1:+70100489 None:intergenic
CCGTGCGTCGTCGTCCAACA+CGG 0.603358 3.1:-70100069 MS.gene045127:CDS
GACTATGGTATGGTGGAGGA+CGG 0.605416 3.1:+70100348 None:intergenic
CCGTGTTGGACGACGACGCA+CGG 0.605601 3.1:+70100069 None:intergenic
TCTAAGTGGAAGTGTTCTTG+TGG 0.613240 3.1:-70099854 MS.gene045127:CDS
CTCCATTTCTGCGAGATATG+CGG 0.627013 3.1:-70100184 MS.gene045127:CDS
AAAGATTTGGTTGGAGACGG+CGG 0.627067 3.1:+70100372 None:intergenic
GTTGACTGAATCAAAGGTGA+TGG 0.628225 3.1:+70100285 None:intergenic
CGGCGTTGACTATGGTATGG+TGG 0.628323 3.1:+70100341 None:intergenic
CGTTGACTATGGTATGGTGG+AGG 0.634509 3.1:+70100344 None:intergenic
GACTGAATCAAAGGTGATGG+AGG 0.635823 3.1:+70100288 None:intergenic
ATCGATGCTTGTCTGAACCA+AGG 0.654173 3.1:+70100459 None:intergenic
CGGGAATCAGTTCAAGACGC+CGG 0.682583 3.1:-70100113 MS.gene045127:CDS
GGATGCACATGAGAGCACAC+GGG 0.701290 3.1:-70100132 MS.gene045127:CDS
ACCAAGGATAGATTCCGAAG+CGG 0.716599 3.1:+70100475 None:intergenic
GCAATCGGAATCTTCCACGG+CGG 0.729614 3.1:+70100249 None:intergenic
GGTGATGGAGGAGAAGACGG+AGG 0.738851 3.1:+70100300 None:intergenic
AAGAGTCATATGAGGCAATG+TGG 0.740474 3.1:-70099881 MS.gene045127:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGCTTTGATGAAATTTT+GGG - chr3.1:70100546-70100565 MS.gene045127:CDS 20.0%
! TAAAGATGATGAAATTGGTA+TGG - chr3.1:70100485-70100504 MS.gene045127:CDS 25.0%
!! AAGAGTTCTTTCATGATTTT+GGG - chr3.1:70100511-70100530 MS.gene045127:CDS 25.0%
!! CTATTGCTTTGATGAAATTT+TGG - chr3.1:70100545-70100564 MS.gene045127:CDS 25.0%
!!! GAAATTCAAAGCATTGAAAT+CGG - chr3.1:70100170-70100189 MS.gene045127:CDS 25.0%
AGATTACACGAATACATCTT+CGG + chr3.1:70100234-70100253 None:intergenic 30.0%
GAAGAATTATTCGATGCTTT+CGG - chr3.1:70100263-70100282 MS.gene045127:CDS 30.0%
TCGAGTAAAGATGATGAAAT+TGG - chr3.1:70100480-70100499 MS.gene045127:CDS 30.0%
TTTCTGTTACATCCTTCAAA+CGG + chr3.1:70100138-70100157 None:intergenic 30.0%
! GAAGAGTTCTTTCATGATTT+TGG - chr3.1:70100510-70100529 MS.gene045127:CDS 30.0%
GAATGAAGATCCTATGGAAA+TGG - chr3.1:70100455-70100474 MS.gene045127:CDS 35.0%
GTTAATTGATCATTGCTGAC+AGG + chr3.1:70099781-70099800 None:intergenic 35.0%
TCTAGGAAGGATAAGTTGTT+TGG - chr3.1:70100351-70100370 MS.gene045127:CDS 35.0%
! GTATTAGTTGGATTTTGCAG+TGG + chr3.1:70099661-70099680 None:intergenic 35.0%
! GTTGTTGTTGACTGAATCAA+AGG + chr3.1:70099896-70099915 None:intergenic 35.0%
AAGAGTCATATGAGGCAATG+TGG - chr3.1:70100291-70100310 MS.gene045127:CDS 40.0%
AAGTATCTGGGTAGTGTGAT+GGG + chr3.1:70099635-70099654 None:intergenic 40.0%
AGATTCCGATTGCGAAATTG+TGG - chr3.1:70099933-70099952 MS.gene045127:CDS 40.0%
ATGTTCAGCTAGCAATTCCA+TGG + chr3.1:70099968-70099987 None:intergenic 40.0%
ATGTTGGAAGATGAGGAGAA+AGG - chr3.1:70100411-70100430 MS.gene045127:CDS 40.0%
CGGATTTGAAGAGTCATATG+AGG - chr3.1:70100283-70100302 MS.gene045127:CDS 40.0%
GTGTGAAGACTCATTTCAAG+AGG - chr3.1:70100199-70100218 MS.gene045127:CDS 40.0%
GTTGACTGAATCAAAGGTGA+TGG + chr3.1:70099890-70099909 None:intergenic 40.0%
TCATATGCCTGCTGTTATGT+TGG - chr3.1:70100395-70100414 MS.gene045127:CDS 40.0%
TCATCTTCCAACATAACAGC+AGG + chr3.1:70100405-70100424 None:intergenic 40.0%
TGAGGAGAATGAAGATCCTA+TGG - chr3.1:70100449-70100468 MS.gene045127:CDS 40.0%
TGCTGTTATGTTGGAAGATG+AGG - chr3.1:70100404-70100423 MS.gene045127:CDS 40.0%
TGTTGGAAGATGAGGAGAAA+GGG - chr3.1:70100412-70100431 MS.gene045127:CDS 40.0%
! TTACTCGATGCCATTTCCAT+AGG + chr3.1:70100468-70100487 None:intergenic 40.0%
! TTGCAGTGGATGAAGTATCT+GGG + chr3.1:70099647-70099666 None:intergenic 40.0%
! TTTGCAGTGGATGAAGTATC+TGG + chr3.1:70099648-70099667 None:intergenic 40.0%
!! CTAAGTGGAAGTGTTCTTGT+GGG - chr3.1:70100319-70100338 MS.gene045127:CDS 40.0%
!! GGACATGTTGCTTTGTTTGA+GGG - chr3.1:70100372-70100391 MS.gene045127:CDS 40.0%
!! TCTAAGTGGAAGTGTTCTTG+TGG - chr3.1:70100318-70100337 MS.gene045127:CDS 40.0%
!! TGGACATGTTGCTTTGTTTG+AGG - chr3.1:70100371-70100390 MS.gene045127:CDS 40.0%
!!! CTTGTGGGAGTACTTTTTCT+AGG - chr3.1:70100334-70100353 MS.gene045127:CDS 40.0%
!!! TGGGAGTACTTTTTCTAGGA+AGG - chr3.1:70100338-70100357 MS.gene045127:CDS 40.0%
AAAGGCTTCGCTAAAGCTTC+CGG + chr3.1:70100081-70100100 None:intergenic 45.0%
ACCAAGGATAGATTCCGAAG+CGG + chr3.1:70099700-70099719 None:intergenic 45.0%
ATCGATGCTTGTCTGAACCA+AGG + chr3.1:70099716-70099735 None:intergenic 45.0%
CTCCATTTCTGCGAGATATG+CGG - chr3.1:70099988-70100007 MS.gene045127:CDS 45.0%
GAGCTCCACAATTTCGCAAT+CGG + chr3.1:70099941-70099960 None:intergenic 45.0%
TTCGCAATCGGAATCTTCCA+CGG + chr3.1:70099929-70099948 None:intergenic 45.0%
! AAAGATTTGGTTGGAGACGG+CGG + chr3.1:70099803-70099822 None:intergenic 45.0%
! GAAGTATCTGGGTAGTGTGA+TGG + chr3.1:70099636-70099655 None:intergenic 45.0%
! GACTGAATCAAAGGTGATGG+AGG + chr3.1:70099887-70099906 None:intergenic 45.0%
! GGCAAAGATTTGGTTGGAGA+CGG + chr3.1:70099806-70099825 None:intergenic 45.0%
!! AAAGGTGATGGAGGAGAAGA+CGG + chr3.1:70099878-70099897 None:intergenic 45.0%
AGATTCCGAAGCGGAACTTG+AGG + chr3.1:70099691-70099710 None:intergenic 50.0%
AGGGAAGCAAGTTGTTGCTG+AGG - chr3.1:70100431-70100450 MS.gene045127:CDS 50.0%
GATTCCGAAGCGGAACTTGA+GGG + chr3.1:70099690-70099709 None:intergenic 50.0%
GGCAATGTGGTGAGTCTAAG+TGG - chr3.1:70100304-70100323 MS.gene045127:CDS 50.0%
TCCGCTTCGGAATCTATCCT+TGG - chr3.1:70099696-70099715 MS.gene045127:CDS 50.0%
TGCCGCATATCTCGCAGAAA+TGG + chr3.1:70099993-70100012 None:intergenic 50.0%
TTCTGCGAGATATGCGGCAA+AGG - chr3.1:70099994-70100013 MS.gene045127:CDS 50.0%
! ATCATTGCTGACAGGAGCGT+TGG + chr3.1:70099773-70099792 None:intergenic 50.0%
! CGTTGACTATGGTATGGTGG+AGG + chr3.1:70099831-70099850 None:intergenic 50.0%
! GACTATGGTATGGTGGAGGA+CGG + chr3.1:70099827-70099846 None:intergenic 50.0%
! GAGGACGGCAAAGATTTGGT+TGG + chr3.1:70099812-70099831 None:intergenic 50.0%
! GGGTAGTGTGATGGGAATCT+GGG + chr3.1:70099627-70099646 None:intergenic 50.0%
! GTGTGATGGGAATCTGGGTT+CGG + chr3.1:70099622-70099641 None:intergenic 50.0%
! TGGATTGGGACAGGAAGGTT+CGG + chr3.1:70099744-70099763 None:intergenic 50.0%
! TGGGTAGTGTGATGGGAATC+TGG + chr3.1:70099628-70099647 None:intergenic 50.0%
!! AGCGTTGGTGGTGATGGATT+GGG + chr3.1:70099758-70099777 None:intergenic 50.0%
AACGGACACGAGAACCGTGT+TGG + chr3.1:70100120-70100139 None:intergenic 55.0%
AATTGTGGAGCTCGACGCCA+TGG - chr3.1:70099948-70099967 MS.gene045127:CDS 55.0%
CGGGAATCAGTTCAAGACGC+CGG - chr3.1:70100059-70100078 MS.gene045127:CDS 55.0%
CGGTTCTCGTGTCCGTTTGA+AGG - chr3.1:70100123-70100142 MS.gene045127:CDS 55.0%
CGTGTGCTCTCATGTGCATC+CGG + chr3.1:70100041-70100060 None:intergenic 55.0%
GCAATCGGAATCTTCCACGG+CGG + chr3.1:70099926-70099945 None:intergenic 55.0%
GGTGGAGGACGGCAAAGATT+TGG + chr3.1:70099816-70099835 None:intergenic 55.0%
! CGGATGCACATGAGAGCACA+CGG - chr3.1:70100039-70100058 MS.gene045127:CDS 55.0%
! GGATGCACATGAGAGCACAC+GGG - chr3.1:70100040-70100059 MS.gene045127:CDS 55.0%
!! ATTGCTGACAGGAGCGTTGG+TGG + chr3.1:70099770-70099789 None:intergenic 55.0%
!! CGGCGTTGACTATGGTATGG+TGG + chr3.1:70099834-70099853 None:intergenic 55.0%
!! GAGCGTTGGTGGTGATGGAT+TGG + chr3.1:70099759-70099778 None:intergenic 55.0%
!! GGTGATGGATTGGGACAGGA+AGG + chr3.1:70099749-70099768 None:intergenic 55.0%
!! TGAGGGTCGGGGGTATTAGT+TGG + chr3.1:70099673-70099692 None:intergenic 55.0%
!! TGGTGGTGATGGATTGGGAC+AGG + chr3.1:70099753-70099772 None:intergenic 55.0%
AAGCGGAACTTGAGGGTCGG+GGG + chr3.1:70099683-70099702 None:intergenic 60.0%
AATCTTCCACGGCGGTGAGG+GGG + chr3.1:70099918-70099937 None:intergenic 60.0%
CCGAAGCGGAACTTGAGGGT+CGG + chr3.1:70099686-70099705 None:intergenic 60.0%
CCGACCCTCAAGTTCCGCTT+CGG - chr3.1:70099683-70099702 MS.gene045127:CDS 60.0%
CGAAGCGGAACTTGAGGGTC+GGG + chr3.1:70099685-70099704 None:intergenic 60.0%
GAAGCGGAACTTGAGGGTCG+GGG + chr3.1:70099684-70099703 None:intergenic 60.0%
GAATCTTCCACGGCGGTGAG+GGG + chr3.1:70099919-70099938 None:intergenic 60.0%
GGAATCTTCCACGGCGGTGA+GGG + chr3.1:70099920-70099939 None:intergenic 60.0%
GGACGACGACGCACGGTTAA+AGG + chr3.1:70100099-70100118 None:intergenic 60.0%
TCAAGCGCGACGCGAATCTC+CGG - chr3.1:70100019-70100038 MS.gene045127:CDS 60.0%
!! CGGCGGCGTTGACTATGGTA+TGG + chr3.1:70099837-70099856 None:intergenic 60.0%
!! GACAGGAGCGTTGGTGGTGA+TGG + chr3.1:70099764-70099783 None:intergenic 60.0%
!! GGTGATGGAGGAGAAGACGG+AGG + chr3.1:70099875-70099894 None:intergenic 60.0%
CCGTGCGTCGTCGTCCAACA+CGG - chr3.1:70100103-70100122 MS.gene045127:CDS 65.0%
CCGTGTTGGACGACGACGCA+CGG + chr3.1:70100106-70100125 None:intergenic 65.0%
CGGAATCTTCCACGGCGGTG+AGG + chr3.1:70099921-70099940 None:intergenic 65.0%
! GGAGGAGAAGACGGAGGCAC+CGG + chr3.1:70099869-70099888 None:intergenic 65.0%
!! GAGGAGAAGACGGAGGCACC+GGG + chr3.1:70099868-70099887 None:intergenic 65.0%
CAACAACCCCCTCACCGCCG+TGG - chr3.1:70099909-70099928 MS.gene045127:CDS 70.0%
!! AGACGGAGGCACCGGGAACG+AGG + chr3.1:70099861-70099880 None:intergenic 70.0%
!! GACGGAGGCACCGGGAACGA+GGG + chr3.1:70099860-70099879 None:intergenic 70.0%
!! GAGGGCGGCGGCGTTGACTA+TGG + chr3.1:70099842-70099861 None:intergenic 70.0%
AACGCCGCCGCCCTCGTTCC+CGG - chr3.1:70099847-70099866 MS.gene045127:CDS 75.0%
!! GGAGGCACCGGGAACGAGGG+CGG + chr3.1:70099857-70099876 None:intergenic 75.0%
!! GGCACCGGGAACGAGGGCGG+CGG + chr3.1:70099854-70099873 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 70099610 70100584 70099610 ID=MS.gene045127
chr3.1 mRNA 70099610 70100584 70099610 ID=MS.gene045127.t1;Parent=MS.gene045127
chr3.1 exon 70099610 70100584 70099610 ID=MS.gene045127.t1.exon1;Parent=MS.gene045127.t1
chr3.1 CDS 70099610 70100584 70099610 ID=cds.MS.gene045127.t1;Parent=MS.gene045127.t1
Gene Sequence

>MS.gene045127

ATGTCTAATCCGAACCCAGATTCCCATCACACTACCCAGATACTTCATCCACTGCAAAATCCAACTAATACCCCCGACCCTCAAGTTCCGCTTCGGAATCTATCCTTGGTTCAGACAAGCATCGATTCTCTCCGAACCTTCCTGTCCCAATCCATCACCACCAACGCTCCTGTCAGCAATGATCAATTAACCGCCGTCTCCAACCAAATCTTTGCCGTCCTCCACCATACCATAGTCAACGCCGCCGCCCTCGTTCCCGGTGCCTCCGTCTTCTCCTCCATCACCTTTGATTCAGTCAACAACAACCCCCTCACCGCCGTGGAAGATTCCGATTGCGAAATTGTGGAGCTCGACGCCATGGAATTGCTAGCTGAACATCTCCATTTCTGCGAGATATGCGGCAAAGGCTTCAAGCGCGACGCGAATCTCCGGATGCACATGAGAGCACACGGGAATCAGTTCAAGACGCCGGAAGCTTTAGCGAAGCCTTTAACCGTGCGTCGTCGTCCAACACGGTTCTCGTGTCCGTTTGAAGGATGTAACAGAAACAAGAAGCATAAGAAATTCAAAGCATTGAAATCGGTGATTTGTGTGAAGACTCATTTCAAGAGGAGTCATTGTCCGAAGATGTATTCGTGTAATCTTTGTCGTAAGAAGAATTATTCGATGCTTTCGGATTTGAAGAGTCATATGAGGCAATGTGGTGAGTCTAAGTGGAAGTGTTCTTGTGGGAGTACTTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCTGTTATGTTGGAAGATGAGGAGAAAGGGAAGCAAGTTGTTGCTGAGGAGAATGAAGATCCTATGGAAATGGCATCGAGTAAAGATGATGAAATTGGTATGGATGAAGAGTTCTTTCATGATTTTGGGTCTATTGATAACTATTGCTTTGATGAAATTTTGGGATTTCGTCGTAGCTAG
Protein sequence

>MS.gene045127.t1

MSNPNPDSHHTTQILHPLQNPTNTPDPQVPLRNLSLVQTSIDSLRTFLSQSITTNAPVSNDQLTAVSNQIFAVLHHTIVNAAALVPGASVFSSITFDSVNNNPLTAVEDSDCEIVELDAMELLAEHLHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLTVRRRPTRFSCPFEGCNRNKKHKKFKALKSVICVKTHFKRSHCPKMYSCNLCRKKNYSMLSDLKSHMRQCGESKWKCSCGSTFSRKDKLFGHVALFEGHMPAVMLEDEEKGKQVVAEENEDPMEMASSKDDEIGMDEEFFHDFGSIDNYCFDEILGFRRS