Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045299.t1 | XP_003601756.2 | 95.9 | 952 | 25 | 1 | 22 | 959 | 5 | 956 | 0.00E+00 | 1755 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045299.t1 | Q9FYG2 | 47.4 | 970 | 429 | 17 | 23 | 925 | 35 | 990 | 2.0e-215 | 750.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045299.t1 | G7JBF2 | 95.9 | 952 | 25 | 1 | 22 | 959 | 5 | 956 | 0.0e+00 | 1755.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045299.t1 | TF | CAMTA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045299.t1 | MTR_3g085050 | 95.798 | 952 | 26 | 1 | 22 | 959 | 5 | 956 | 0.0 | 1908 |
| MS.gene045299.t1 | MTR_3g085050 | 95.619 | 913 | 26 | 1 | 22 | 920 | 5 | 917 | 0.0 | 1820 |
| MS.gene045299.t1 | MTR_8g080800 | 59.184 | 980 | 316 | 12 | 23 | 945 | 6 | 958 | 0.0 | 1093 |
| MS.gene045299.t1 | MTR_4g121840 | 31.049 | 963 | 546 | 29 | 25 | 938 | 26 | 919 | 1.84e-115 | 377 |
| MS.gene045299.t1 | MTR_2g008840 | 37.971 | 611 | 304 | 14 | 392 | 945 | 399 | 991 | 8.18e-115 | 377 |
| MS.gene045299.t1 | MTR_2g008840 | 53.191 | 141 | 58 | 3 | 59 | 192 | 8 | 147 | 3.83e-36 | 148 |
| MS.gene045299.t1 | MTR_2g008840 | 37.971 | 611 | 304 | 14 | 392 | 945 | 439 | 1031 | 1.87e-114 | 377 |
| MS.gene045299.t1 | MTR_2g008840 | 49.718 | 177 | 81 | 3 | 23 | 192 | 12 | 187 | 3.65e-43 | 171 |
| MS.gene045299.t1 | MTR_8g090205 | 37.750 | 551 | 293 | 8 | 403 | 914 | 344 | 883 | 1.15e-106 | 353 |
| MS.gene045299.t1 | MTR_8g090205 | 37.750 | 551 | 293 | 8 | 403 | 914 | 344 | 883 | 1.58e-106 | 352 |
| MS.gene045299.t1 | MTR_4g121840 | 31.128 | 922 | 517 | 29 | 66 | 938 | 37 | 889 | 1.12e-105 | 349 |
| MS.gene045299.t1 | MTR_8g090205 | 37.750 | 551 | 293 | 8 | 403 | 914 | 503 | 1042 | 1.55e-105 | 353 |
| MS.gene045299.t1 | MTR_8g090205 | 58.197 | 122 | 51 | 0 | 25 | 146 | 12 | 133 | 1.93e-42 | 168 |
| MS.gene045299.t1 | MTR_8g090205 | 37.750 | 551 | 293 | 8 | 403 | 914 | 501 | 1040 | 1.77e-105 | 353 |
| MS.gene045299.t1 | MTR_8g090205 | 48.521 | 169 | 83 | 2 | 23 | 188 | 8 | 175 | 2.32e-43 | 171 |
| MS.gene045299.t1 | MTR_8g090205 | 37.750 | 551 | 293 | 8 | 403 | 914 | 503 | 1042 | 1.84e-105 | 353 |
| MS.gene045299.t1 | MTR_8g090205 | 58.197 | 122 | 51 | 0 | 25 | 146 | 12 | 133 | 1.96e-42 | 168 |
| MS.gene045299.t1 | MTR_8g090205 | 37.750 | 551 | 293 | 8 | 403 | 914 | 501 | 1040 | 2.05e-105 | 353 |
| MS.gene045299.t1 | MTR_8g090205 | 58.065 | 124 | 52 | 0 | 23 | 146 | 8 | 131 | 2.28e-43 | 171 |
| MS.gene045299.t1 | MTR_4g094215 | 36.192 | 583 | 288 | 14 | 392 | 914 | 426 | 984 | 1.04e-101 | 342 |
| MS.gene045299.t1 | MTR_4g094215 | 48.571 | 140 | 72 | 0 | 20 | 159 | 9 | 148 | 2.64e-38 | 155 |
| MS.gene045299.t1 | MTR_4g094215 | 36.192 | 583 | 288 | 14 | 392 | 914 | 426 | 984 | 1.07e-101 | 342 |
| MS.gene045299.t1 | MTR_4g094215 | 48.571 | 140 | 72 | 0 | 20 | 159 | 9 | 148 | 2.69e-38 | 155 |
| MS.gene045299.t1 | MTR_2g008840 | 38.025 | 476 | 249 | 10 | 392 | 837 | 439 | 898 | 5.76e-90 | 307 |
| MS.gene045299.t1 | MTR_2g008840 | 49.718 | 177 | 81 | 3 | 23 | 192 | 12 | 187 | 2.46e-43 | 171 |
| MS.gene045299.t1 | MTR_8g090205 | 38.053 | 452 | 254 | 6 | 403 | 838 | 503 | 944 | 8.60e-87 | 299 |
| MS.gene045299.t1 | MTR_8g090205 | 58.197 | 122 | 51 | 0 | 25 | 146 | 12 | 133 | 1.37e-42 | 169 |
| MS.gene045299.t1 | MTR_4g094215 | 35.197 | 483 | 253 | 12 | 392 | 837 | 426 | 885 | 3.04e-80 | 280 |
| MS.gene045299.t1 | MTR_4g094215 | 48.571 | 140 | 72 | 0 | 20 | 159 | 9 | 148 | 2.58e-38 | 155 |
| MS.gene045299.t1 | MTR_2g034650 | 31.746 | 567 | 320 | 13 | 392 | 911 | 339 | 885 | 1.23e-71 | 256 |
| MS.gene045299.t1 | MTR_2g034650 | 52.703 | 148 | 68 | 1 | 25 | 172 | 25 | 170 | 1.01e-40 | 162 |
| MS.gene045299.t1 | MTR_8g090200 | 45.161 | 93 | 48 | 1 | 405 | 494 | 315 | 407 | 1.57e-19 | 92.8 |
| MS.gene045299.t1 | MTR_4g123740 | 49.153 | 59 | 29 | 1 | 87 | 145 | 6 | 63 | 3.71e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045299.t1 | AT1G67310 | 47.830 | 1014 | 421 | 24 | 22 | 958 | 34 | 1016 | 0.0 | 801 |
| MS.gene045299.t1 | AT5G09410 | 35.910 | 621 | 315 | 15 | 396 | 954 | 281 | 880 | 2.23e-106 | 351 |
| MS.gene045299.t1 | AT5G09410 | 35.968 | 620 | 316 | 15 | 396 | 954 | 402 | 1001 | 2.37e-105 | 351 |
| MS.gene045299.t1 | AT5G09410 | 52.632 | 133 | 63 | 0 | 22 | 154 | 14 | 146 | 4.76e-41 | 164 |
| MS.gene045299.t1 | AT5G09410 | 35.968 | 620 | 316 | 15 | 396 | 954 | 384 | 983 | 2.52e-105 | 351 |
| MS.gene045299.t1 | AT5G09410 | 52.632 | 133 | 63 | 0 | 22 | 154 | 14 | 146 | 5.17e-41 | 164 |
| MS.gene045299.t1 | AT5G09410 | 35.968 | 620 | 316 | 15 | 396 | 954 | 461 | 1060 | 1.41e-104 | 350 |
| MS.gene045299.t1 | AT5G09410 | 54.400 | 125 | 52 | 1 | 22 | 141 | 73 | 197 | 3.00e-37 | 152 |
| MS.gene045299.t1 | AT5G64220 | 37.611 | 561 | 294 | 14 | 396 | 912 | 451 | 999 | 1.10e-103 | 348 |
| MS.gene045299.t1 | AT5G64220 | 47.879 | 165 | 84 | 1 | 23 | 185 | 12 | 176 | 1.53e-43 | 172 |
| MS.gene045299.t1 | AT5G64220 | 37.611 | 561 | 294 | 14 | 396 | 912 | 451 | 999 | 1.10e-103 | 348 |
| MS.gene045299.t1 | AT5G64220 | 47.879 | 165 | 84 | 1 | 23 | 185 | 12 | 176 | 1.53e-43 | 172 |
| MS.gene045299.t1 | AT2G22300 | 36.577 | 555 | 289 | 11 | 396 | 914 | 396 | 923 | 4.59e-100 | 336 |
| MS.gene045299.t1 | AT2G22300 | 51.240 | 121 | 58 | 1 | 70 | 189 | 1 | 121 | 4.35e-31 | 132 |
| MS.gene045299.t1 | AT2G22300 | 36.528 | 553 | 292 | 10 | 396 | 914 | 454 | 981 | 8.10e-100 | 337 |
| MS.gene045299.t1 | AT2G22300 | 45.833 | 168 | 90 | 1 | 23 | 189 | 12 | 179 | 6.44e-42 | 167 |
| MS.gene045299.t1 | AT2G22300 | 36.528 | 553 | 292 | 10 | 396 | 914 | 454 | 981 | 8.10e-100 | 337 |
| MS.gene045299.t1 | AT2G22300 | 45.833 | 168 | 90 | 1 | 23 | 189 | 12 | 179 | 6.44e-42 | 167 |
| MS.gene045299.t1 | AT3G16940 | 31.552 | 580 | 331 | 14 | 390 | 927 | 262 | 817 | 2.37e-69 | 248 |
| MS.gene045299.t1 | AT3G16940 | 52.414 | 145 | 66 | 2 | 29 | 173 | 1 | 142 | 1.16e-39 | 159 |
| MS.gene045299.t1 | AT3G16940 | 31.552 | 580 | 331 | 14 | 390 | 927 | 289 | 844 | 4.12e-69 | 247 |
| MS.gene045299.t1 | AT3G16940 | 51.007 | 149 | 70 | 2 | 25 | 173 | 24 | 169 | 5.45e-40 | 160 |
| MS.gene045299.t1 | AT3G16940 | 31.435 | 474 | 275 | 12 | 390 | 836 | 289 | 739 | 1.73e-52 | 197 |
| MS.gene045299.t1 | AT3G16940 | 51.007 | 149 | 70 | 2 | 25 | 173 | 24 | 169 | 2.92e-40 | 160 |
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTGTAAATTTCTGTTTC+TGG | 0.128293 | 3.1:+64760166 | None:intergenic |
| CATCCCGAGGTTCTTGAATT+TGG | 0.192741 | 3.1:+64760211 | None:intergenic |
| TATAATCCCTTGCTCTTTCT+TGG | 0.193263 | 3.1:+64758862 | None:intergenic |
| GGGATTATACACATAGTTTC+TGG | 0.215272 | 3.1:-64758848 | MS.gene045299:CDS |
| AATTTCATGCTCATTATAAA+AGG | 0.218703 | 3.1:+64764699 | None:intergenic |
| TGAGTTTCTATTGAAGAATA+TGG | 0.231372 | 3.1:+64760276 | None:intergenic |
| GCCTCCACCACTTGTCTAAA+TGG | 0.241617 | 3.1:-64757735 | MS.gene045299:CDS |
| TCATTGGCATAACAATATTC+TGG | 0.250713 | 3.1:+64760132 | None:intergenic |
| TTCGAAAAGATGGTCATAAT+TGG | 0.253911 | 3.1:-64766758 | MS.gene045299:CDS |
| AATGGATATGTCACCGGTTT+AGG | 0.257839 | 3.1:-64757717 | MS.gene045299:CDS |
| TTGCATTCACTGTAATGTTT+TGG | 0.270778 | 3.1:-64759179 | MS.gene045299:CDS |
| CAGTCCCTTGTGCCCATTGC+TGG | 0.272292 | 3.1:+64758019 | None:intergenic |
| GAAACGCCTCTATCTTCTTT+TGG | 0.274448 | 3.1:-64760505 | MS.gene045299:CDS |
| TTGAAGAATATGGAGAAAAT+TGG | 0.278554 | 3.1:+64760286 | None:intergenic |
| TTCTCATCATTATTGCTGTT+GGG | 0.280715 | 3.1:+64760439 | None:intergenic |
| GTTTCCAGAGGCGAAGTTAT+TGG | 0.289983 | 3.1:-64766007 | MS.gene045299:CDS |
| CAACCATATGATGGATATAA+TGG | 0.292630 | 3.1:-64764643 | MS.gene045299:CDS |
| TCTACCTGGGCTTGTATGTT+TGG | 0.292828 | 3.1:-64759358 | MS.gene045299:CDS |
| GTGCATTACTTCAGGAAATA+AGG | 0.299775 | 3.1:-64759251 | MS.gene045299:CDS |
| CCATTTGGATCTTGTGAACT+TGG | 0.310113 | 3.1:+64758065 | None:intergenic |
| GAGGCTCCGTCCCATCTTCT+TGG | 0.324091 | 3.1:-64759286 | MS.gene045299:CDS |
| TCAAGCTCAGAAGAATCTTT+AGG | 0.325777 | 3.1:+64757927 | None:intergenic |
| GGCAATACAAGCTAATGATA+TGG | 0.326426 | 3.1:-64757327 | MS.gene045299:CDS |
| CTAGGAGAGCATCTATAATA+TGG | 0.330922 | 3.1:+64759008 | None:intergenic |
| TGCATCTTCATCTCGTTCAT+TGG | 0.331556 | 3.1:+64758898 | None:intergenic |
| AGTTCCTGCTGAAATAATTC+AGG | 0.333245 | 3.1:-64759326 | MS.gene045299:CDS |
| ATAACAGTTCTTCTGGACTA+TGG | 0.334037 | 3.1:+64759143 | None:intergenic |
| CACAACTGAGAATGGGGTTC+AGG | 0.337492 | 3.1:+64758807 | None:intergenic |
| GCATCTATTGCGGCCAGCAA+TGG | 0.343835 | 3.1:-64758032 | MS.gene045299:CDS |
| CTTCATTGGGCTGCACGGTT+TGG | 0.345093 | 3.1:-64758743 | MS.gene045299:CDS |
| ACAAGTAATAACAGTTCTTC+TGG | 0.345367 | 3.1:+64759136 | None:intergenic |
| CCTCTCTGCTTCGATTATAA+AGG | 0.347695 | 3.1:-64759095 | MS.gene045299:CDS |
| AACTTAATTGTTCCTCCAAT+TGG | 0.352792 | 3.1:+64764752 | None:intergenic |
| GCCTCCCCTCGGATTCTACC+TGG | 0.353045 | 3.1:-64759372 | MS.gene045299:CDS |
| GTTGGGGTGTATCCGGTAAC+TGG | 0.354213 | 3.1:+64760456 | None:intergenic |
| CGCACAAGCTCTGCGCCAAT+TGG | 0.355249 | 3.1:-64764767 | MS.gene045299:CDS |
| TCCTTGTATGCGTGTTGTTT+TGG | 0.357909 | 3.1:+64760931 | None:intergenic |
| GGGAAAATCGGTGAACTTGC+AGG | 0.359647 | 3.1:+64766957 | None:intergenic |
| TATGGTTGTTTATGATCATC+TGG | 0.363053 | 3.1:+64764658 | None:intergenic |
| TTCACATGAATCACCAACTA+TGG | 0.363538 | 3.1:+64764882 | None:intergenic |
| CATCTATTGCGGCCAGCAAT+GGG | 0.366299 | 3.1:-64758031 | MS.gene045299:CDS |
| GTTCTCATCATTATTGCTGT+TGG | 0.366506 | 3.1:+64760438 | None:intergenic |
| CTCCAGTCCTGGGTTCTTAG+AGG | 0.368654 | 3.1:-64764845 | MS.gene045299:CDS |
| ATTGCTGCTGGTGCATCTGC+TGG | 0.368996 | 3.1:-64758101 | MS.gene045299:CDS |
| GATATGGGCAGTTGGAATCT+TGG | 0.378012 | 3.1:-64757311 | MS.gene045299:CDS |
| GTGGCATTGGTGGATATGTT+AGG | 0.378824 | 3.1:-64757695 | MS.gene045299:CDS |
| ATGATTTATATCAATTTCCT+TGG | 0.379049 | 3.1:-64756600 | MS.gene045299:CDS |
| ATGGATGTTGTCTCAGGGTT+TGG | 0.382049 | 3.1:+64764901 | None:intergenic |
| TGTTACCATGAGGCTGGTTA+AGG | 0.382153 | 3.1:+64766935 | None:intergenic |
| GTATCCGGTAACTGGTTTCC+TGG | 0.383094 | 3.1:+64760464 | None:intergenic |
| CTTGACCATGATTGCCCTGC+TGG | 0.384698 | 3.1:-64761021 | MS.gene045299:CDS |
| GTTGCTCTGTGCATTACTTC+AGG | 0.384723 | 3.1:-64759259 | MS.gene045299:CDS |
| GTTCCATTATATCCATCATA+TGG | 0.384932 | 3.1:+64764640 | None:intergenic |
| ATGGATGGACTGCCCTTCAT+TGG | 0.385897 | 3.1:-64758757 | MS.gene045299:CDS |
| CCAACTATGGATGTTGTCTC+AGG | 0.386456 | 3.1:+64764895 | None:intergenic |
| CTTGTTTGCAAATGAGGACT+TGG | 0.388891 | 3.1:+64760957 | None:intergenic |
| GAGGTTCTTGAATTTGGCTT+TGG | 0.394026 | 3.1:+64760217 | None:intergenic |
| CATGTGTAGGTGATCATTGT+TGG | 0.398565 | 3.1:-64759406 | MS.gene045299:intron |
| TCCACCAATGCCACCTAAAC+CGG | 0.398700 | 3.1:+64757704 | None:intergenic |
| GTTAATTTCCGTGATATCAA+TGG | 0.399308 | 3.1:-64758776 | MS.gene045299:CDS |
| AGAAGCGCATGAACGGCTTA+AGG | 0.406373 | 3.1:-64766706 | MS.gene045299:intron |
| GCTTGTATTGCCTCCGAGTC+TGG | 0.406666 | 3.1:+64757338 | None:intergenic |
| TGGTAACTTGTTTGCAAATG+AGG | 0.409912 | 3.1:+64760951 | None:intergenic |
| ATACACATAGTTTCTGGATT+GGG | 0.416266 | 3.1:-64758842 | MS.gene045299:CDS |
| GTGAACCTTTGTTGCCTCAT+TGG | 0.418858 | 3.1:+64760116 | None:intergenic |
| AGAAAGCAGATGATGATTCA+TGG | 0.418980 | 3.1:-64759033 | MS.gene045299:CDS |
| GATGGATATAATGGAACAAA+AGG | 0.419267 | 3.1:-64764634 | MS.gene045299:intron |
| AATCAGAATTTCTCCAGTCC+TGG | 0.422608 | 3.1:-64764856 | MS.gene045299:CDS |
| ATGCGTTTCTTTCGAAAAGA+TGG | 0.423560 | 3.1:-64766768 | MS.gene045299:CDS |
| AAGGATGATAGCTCAGAATC+TGG | 0.430655 | 3.1:-64759076 | MS.gene045299:CDS |
| TATTGCTGTTGGGGTGTATC+CGG | 0.432086 | 3.1:+64760449 | None:intergenic |
| TTACAGGGGACATCCAATTC+TGG | 0.432848 | 3.1:-64764976 | MS.gene045299:intron |
| CAGCATCTCTGTCCAAGATA+AGG | 0.435726 | 3.1:+64760987 | None:intergenic |
| TGGATGGACTGCCCTTCATT+GGG | 0.436126 | 3.1:-64758756 | MS.gene045299:CDS |
| GGACTGGAGAAATTCTGATT+AGG | 0.437165 | 3.1:+64764859 | None:intergenic |
| TGGCAACACGAGTGATGAAA+TGG | 0.437603 | 3.1:-64756689 | MS.gene045299:CDS |
| TGCAGCAATTCAAAAGGCTT+TGG | 0.437608 | 3.1:-64757165 | MS.gene045299:CDS |
| CTGCCCTTCATTGGGCTGCA+CGG | 0.438440 | 3.1:-64758748 | MS.gene045299:CDS |
| CTTATCTTGGACAGAGATGC+TGG | 0.440239 | 3.1:-64760986 | MS.gene045299:CDS |
| CATTGGCATAACAATATTCT+GGG | 0.440294 | 3.1:+64760133 | None:intergenic |
| CAGCAATGGGCACAAGGGAC+TGG | 0.440405 | 3.1:-64758018 | MS.gene045299:CDS |
| GTTGCTTCACTTATTGCTGC+TGG | 0.440412 | 3.1:-64758113 | MS.gene045299:CDS |
| ATTACAGTGAATGCAACTAT+TGG | 0.441063 | 3.1:+64759186 | None:intergenic |
| AAAATGTAAAGCACTTCTAT+AGG | 0.441324 | 3.1:+64766994 | None:intergenic |
| ATTCATGCCACAACTGAGAA+TGG | 0.444168 | 3.1:+64758799 | None:intergenic |
| TCAGGCAGCTGCACGTATAC+AGG | 0.444713 | 3.1:-64757805 | MS.gene045299:CDS |
| CATCAGTATAATCGCATGCT+TGG | 0.446008 | 3.1:-64757104 | MS.gene045299:CDS |
| ATATTTCTTCTGAATTGATA+AGG | 0.446959 | 3.1:+64757647 | None:intergenic |
| ATGAATTTACGTTGCCAACT+AGG | 0.447557 | 3.1:+64758990 | None:intergenic |
| TTCATGCCACAACTGAGAAT+GGG | 0.447886 | 3.1:+64758800 | None:intergenic |
| TCTGGTTCAGCGAATGCAAC+AGG | 0.449281 | 3.1:+64764676 | None:intergenic |
| CCAACCAGGAAACCAGTTAC+CGG | 0.462646 | 3.1:-64760468 | MS.gene045299:CDS |
| CAACTTCTGTGGATGATGCT+TGG | 0.463627 | 3.1:-64756654 | MS.gene045299:CDS |
| TATACACATAGTTTCTGGAT+TGG | 0.464836 | 3.1:-64758843 | MS.gene045299:CDS |
| GTTTGGGCAGGCTCATGTGA+GGG | 0.465902 | 3.1:-64757365 | MS.gene045299:intron |
| CAAACCGTGCAGCCCAATGA+AGG | 0.466086 | 3.1:+64758744 | None:intergenic |
| TTCAGAAGAAATATAGAGGC+TGG | 0.466525 | 3.1:-64757638 | MS.gene045299:CDS |
| AAGAGAAATGATTGCCAACC+AGG | 0.467341 | 3.1:-64760482 | MS.gene045299:CDS |
| GAGCTACGACTCTGACTAAA+CGG | 0.468229 | 3.1:+64764934 | None:intergenic |
| GTGCACATTCTTTCAGAAAA+CGG | 0.468978 | 3.1:-64757773 | MS.gene045299:CDS |
| ATCCTTTCTCTGCCTCCCCT+CGG | 0.469219 | 3.1:-64759383 | MS.gene045299:CDS |
| TGCTGTCAGAAATGCAGCTC+AGG | 0.471697 | 3.1:-64757823 | MS.gene045299:CDS |
| TCTCTTCCAAAAGAAGATAG+AGG | 0.474103 | 3.1:+64760499 | None:intergenic |
| TTCTGGATTGGGTTTCGAGT+GGG | 0.474526 | 3.1:-64758831 | MS.gene045299:CDS |
| GAGCAACCTTTCCAAGAAGA+TGG | 0.475271 | 3.1:+64759275 | None:intergenic |
| ACAACTGAGAATGGGGTTCA+GGG | 0.477876 | 3.1:+64758808 | None:intergenic |
| ATCAGTATAATCGCATGCTT+GGG | 0.478091 | 3.1:-64757103 | MS.gene045299:CDS |
| TCTCATCATTATTGCTGTTG+GGG | 0.481799 | 3.1:+64760440 | None:intergenic |
| TTCAAGAAGCTAAGAAAAGA+TGG | 0.482062 | 3.1:-64767023 | MS.gene045299:CDS |
| GTTACCATGAGGCTGGTTAA+GGG | 0.482952 | 3.1:+64766936 | None:intergenic |
| CTTGGAATATTGATGATGCT+TGG | 0.484389 | 3.1:-64756636 | MS.gene045299:CDS |
| CATGCCCAGCAGGGCAATCA+TGG | 0.486673 | 3.1:+64761016 | None:intergenic |
| GTTGGCAACGTAAATTCATC+TGG | 0.487682 | 3.1:-64758986 | MS.gene045299:CDS |
| AGGCTGGTTAAGGGGAAAAT+CGG | 0.489276 | 3.1:+64766945 | None:intergenic |
| ATTATAGATGCTCTCCTAGT+TGG | 0.490367 | 3.1:-64759004 | MS.gene045299:CDS |
| GCAATACAAGCTAATGATAT+GGG | 0.490598 | 3.1:-64757326 | MS.gene045299:CDS |
| CCGGTAACTGGTTTCCTGGT+TGG | 0.491923 | 3.1:+64760468 | None:intergenic |
| ATCCGAGGGGAGGCAGAGAA+AGG | 0.494394 | 3.1:+64759381 | None:intergenic |
| TGAAGGATAAGCTGCGGCAC+TGG | 0.500111 | 3.1:-64758934 | MS.gene045299:CDS |
| TCAATTCAGAAGAAATATAG+AGG | 0.500680 | 3.1:-64757642 | MS.gene045299:CDS |
| ACATCCAATAACTTCGCCTC+TGG | 0.501649 | 3.1:+64766003 | None:intergenic |
| TTGACCATGATTGCCCTGCT+GGG | 0.501670 | 3.1:-64761020 | MS.gene045299:CDS |
| ACAAGCTCTGCGCCAATTGG+AGG | 0.502276 | 3.1:-64764764 | MS.gene045299:CDS |
| ATCAGAATTTCTCCAGTCCT+GGG | 0.502563 | 3.1:-64764855 | MS.gene045299:CDS |
| AACTCTTTGATTTCACTGCA+TGG | 0.505283 | 3.1:+64759226 | None:intergenic |
| GAAAAGATGGTCATAATTGG+CGG | 0.506642 | 3.1:-64766755 | MS.gene045299:CDS |
| TAGTGAATCCTCATCATCAC+TGG | 0.508175 | 3.1:+64757860 | None:intergenic |
| ATTTCATGCTCATTATAAAA+GGG | 0.509625 | 3.1:+64764700 | None:intergenic |
| CCATCCTGAATTATTTCAGC+AGG | 0.510184 | 3.1:+64759322 | None:intergenic |
| AGTACATGCAGCAATTCAAA+AGG | 0.511198 | 3.1:-64757171 | MS.gene045299:CDS |
| ACCGGTTTAGGTGGCATTGG+TGG | 0.512373 | 3.1:-64757705 | MS.gene045299:CDS |
| TCCATTTAGACAAGTGGTGG+AGG | 0.513397 | 3.1:+64757734 | None:intergenic |
| TTGTGTGACAGGACCAGAAT+TGG | 0.513446 | 3.1:+64764963 | None:intergenic |
| TTTGGCACGGGTGATTTCCA+TGG | 0.514213 | 3.1:-64757147 | MS.gene045299:CDS |
| AATGGGCACAAGGGACTGGC+AGG | 0.514534 | 3.1:-64758014 | MS.gene045299:CDS |
| GATCATAAACAACCATATGA+TGG | 0.514783 | 3.1:-64764652 | MS.gene045299:CDS |
| TGATTTATATCAATTTCCTT+GGG | 0.515469 | 3.1:-64756599 | MS.gene045299:CDS |
| TAACAGTTCTTCTGGACTAT+GGG | 0.516224 | 3.1:+64759144 | None:intergenic |
| CTCGTTCACATTCAACGCTA+CGG | 0.517307 | 3.1:+64769115 | None:intergenic |
| AATTCAAAAGGCTTTGGCAC+GGG | 0.518782 | 3.1:-64757159 | MS.gene045299:CDS |
| GGAACAATTAAGTTTGAATG+AGG | 0.519133 | 3.1:-64764743 | MS.gene045299:CDS |
| AAGCTAATGATATGGGCAGT+TGG | 0.520016 | 3.1:-64757319 | MS.gene045299:CDS |
| GTCACCGGTTTAGGTGGCAT+TGG | 0.523450 | 3.1:-64757708 | MS.gene045299:CDS |
| TCCGTCCCATCTTCTTGGAA+AGG | 0.524865 | 3.1:-64759281 | MS.gene045299:CDS |
| CTGAACCCCATTCTCAGTTG+TGG | 0.525541 | 3.1:-64758806 | MS.gene045299:CDS |
| ATTGGGCTGCACGGTTTGGA+AGG | 0.532088 | 3.1:-64758739 | MS.gene045299:intron |
| GACCTCTAAGAACCCAGGAC+TGG | 0.539550 | 3.1:+64764843 | None:intergenic |
| AAGCCAAATTCAAGAACCTC+GGG | 0.541578 | 3.1:-64760214 | MS.gene045299:CDS |
| ACCAAAACAACACGCATACA+AGG | 0.542431 | 3.1:-64760932 | MS.gene045299:CDS |
| CCAAGTTCACAAGATCCAAA+TGG | 0.543852 | 3.1:-64758065 | MS.gene045299:CDS |
| AACGGTGATGATTGTGTGAC+AGG | 0.544242 | 3.1:+64764952 | None:intergenic |
| TTTGGGCAGGCTCATGTGAG+GGG | 0.545911 | 3.1:-64757364 | MS.gene045299:intron |
| CTGTTTCAGAAGCGCATGAA+CGG | 0.548045 | 3.1:-64766713 | MS.gene045299:CDS |
| CCTCCCCTCGGATTCTACCT+GGG | 0.548614 | 3.1:-64759371 | MS.gene045299:CDS |
| TGTCTAAATGGATATGTCAC+CGG | 0.549024 | 3.1:-64757723 | MS.gene045299:CDS |
| AGTCATCATGAATAATGAAA+CGG | 0.549592 | 3.1:-64764809 | MS.gene045299:CDS |
| TGCATCTGCTGGAGCAGTGA+CGG | 0.550109 | 3.1:-64758090 | MS.gene045299:CDS |
| TGATGACGAGCATGCACAGA+AGG | 0.550115 | 3.1:+64757122 | None:intergenic |
| GGATTCACTAAGAAATACCT+TGG | 0.550666 | 3.1:-64757847 | MS.gene045299:CDS |
| TAAGAATGTTACCATGAGGC+TGG | 0.551040 | 3.1:+64766929 | None:intergenic |
| TGCGGCCAGCAATGGGCACA+AGG | 0.551436 | 3.1:-64758024 | MS.gene045299:CDS |
| TTACTTCCTCAAGACACTGG+TGG | 0.551472 | 3.1:-64760312 | MS.gene045299:CDS |
| TGTTTGGGCAGGCTCATGTG+AGG | 0.551502 | 3.1:-64757366 | MS.gene045299:intron |
| TGCATTTCTGACAGCACCCA+AGG | 0.555782 | 3.1:+64757830 | None:intergenic |
| AACTTCGCCTCTGGAAACTA+CGG | 0.556762 | 3.1:+64766012 | None:intergenic |
| TTTCCCCTTAACCAGCCTCA+TGG | 0.561765 | 3.1:-64766940 | MS.gene045299:intron |
| GGATATGTCACCGGTTTAGG+TGG | 0.565101 | 3.1:-64757714 | MS.gene045299:CDS |
| CCTGAGACAACATCCATAGT+TGG | 0.569426 | 3.1:-64764895 | MS.gene045299:CDS |
| CAATTCAAAAGGCTTTGGCA+CGG | 0.569867 | 3.1:-64757160 | MS.gene045299:CDS |
| CTAAACTGCTACTATGCACA+TGG | 0.570887 | 3.1:-64766044 | MS.gene045299:CDS |
| CAGTCCATCCATTGATATCA+CGG | 0.574632 | 3.1:+64758768 | None:intergenic |
| ATGTGAGGGGTTACCAGACT+CGG | 0.574934 | 3.1:-64757351 | MS.gene045299:CDS |
| GCATATTCAAGCTTGACTGT+TGG | 0.580162 | 3.1:-64760189 | MS.gene045299:CDS |
| TTTCTGGATTGGGTTTCGAG+TGG | 0.582020 | 3.1:-64758832 | MS.gene045299:CDS |
| AGCAACCTTTCCAAGAAGAT+GGG | 0.582697 | 3.1:+64759276 | None:intergenic |
| AGAATATTGTTATGCCAATG+AGG | 0.584614 | 3.1:-64760130 | MS.gene045299:CDS |
| ATGTTAGGCATAAAGGAAGA+AGG | 0.584665 | 3.1:-64769150 | MS.gene045299:CDS |
| AATGAACGAGATGAAGATGC+AGG | 0.584800 | 3.1:-64758896 | MS.gene045299:CDS |
| TCTTTGTCCAAGAAAGAGCA+AGG | 0.586979 | 3.1:-64758869 | MS.gene045299:CDS |
| TTACCATGAGGCTGGTTAAG+GGG | 0.590627 | 3.1:+64766937 | None:intergenic |
| CTTTGTCCAAGAAAGAGCAA+GGG | 0.591267 | 3.1:-64758868 | MS.gene045299:CDS |
| TCTTGAAGCCAGTGATGATG+AGG | 0.591725 | 3.1:-64757868 | MS.gene045299:CDS |
| TGGGATGCGTCGTCGAGCCG+AGG | 0.592717 | 3.1:-64757084 | MS.gene045299:intron |
| TCTTCTTCAAGAGCTGCTGA+AGG | 0.595191 | 3.1:-64758951 | MS.gene045299:CDS |
| ACCTTTCCAAGAAGATGGGA+CGG | 0.596282 | 3.1:+64759280 | None:intergenic |
| AAAGCCAAATTCAAGAACCT+CGG | 0.596609 | 3.1:-64760215 | MS.gene045299:CDS |
| AACACGGTTATCAACTTCTG+TGG | 0.597925 | 3.1:-64756665 | MS.gene045299:CDS |
| GCATAAAGGAAGAAGGTCAA+GGG | 0.599802 | 3.1:-64769143 | MS.gene045299:CDS |
| TTATGCCAATGAGGCAACAA+AGG | 0.601144 | 3.1:-64760121 | MS.gene045299:intron |
| GATTCACTAAGAAATACCTT+GGG | 0.601371 | 3.1:-64757846 | MS.gene045299:CDS |
| AAACCGTGCAGCCCAATGAA+GGG | 0.601471 | 3.1:+64758745 | None:intergenic |
| GACATATCCATTTAGACAAG+TGG | 0.602811 | 3.1:+64757728 | None:intergenic |
| TCATCTGTCATCCCTCACAT+TGG | 0.603114 | 3.1:-64757964 | MS.gene045299:CDS |
| CAACTATGGATGTTGTCTCA+GGG | 0.603209 | 3.1:+64764896 | None:intergenic |
| ATTTCCGTGATATCAATGGA+TGG | 0.609222 | 3.1:-64758772 | MS.gene045299:CDS |
| CCCAGGTAGAATCCGAGGGG+AGG | 0.609248 | 3.1:+64759371 | None:intergenic |
| GTCACCAAACATACAAGCCC+AGG | 0.609877 | 3.1:+64759354 | None:intergenic |
| TGGACTCCACCAGTGTCTTG+AGG | 0.610261 | 3.1:+64760306 | None:intergenic |
| TAAAACTGCTGCATCTATTG+CGG | 0.610279 | 3.1:-64758042 | MS.gene045299:CDS |
| ACAAGCCCAGGTAGAATCCG+AGG | 0.613314 | 3.1:+64759366 | None:intergenic |
| ATATCCATTTAGACAAGTGG+TGG | 0.614907 | 3.1:+64757731 | None:intergenic |
| ACATTCTTTCAGAAAACGGA+TGG | 0.616326 | 3.1:-64757769 | MS.gene045299:CDS |
| TCATGCTCATTATAAAAGGG+TGG | 0.618544 | 3.1:+64764703 | None:intergenic |
| GGCATAAAGGAAGAAGGTCA+AGG | 0.619862 | 3.1:-64769144 | MS.gene045299:CDS |
| ATTCTCTTACAGGCTGAACA+TGG | 0.626364 | 3.1:-64756709 | MS.gene045299:intron |
| GAAGGCTAGAGCGCTTCCCA+AGG | 0.628496 | 3.1:+64756583 | None:intergenic |
| CAAGCCCAGGTAGAATCCGA+GGG | 0.628679 | 3.1:+64759367 | None:intergenic |
| AGCATGCACAGAAGGGACCA+TGG | 0.630235 | 3.1:+64757130 | None:intergenic |
| TATTCTTCAATAGAAACTCA+AGG | 0.630493 | 3.1:-64760273 | MS.gene045299:CDS |
| GGCAGTTGGAATCTTGGACA+AGG | 0.634216 | 3.1:-64757305 | MS.gene045299:CDS |
| TCATGCCACAACTGAGAATG+GGG | 0.637586 | 3.1:+64758801 | None:intergenic |
| ATCTTGGACAAGGTTGTGCT+AGG | 0.638790 | 3.1:-64757295 | MS.gene045299:intron |
| GCGGCCAGCAATGGGCACAA+GGG | 0.639651 | 3.1:-64758023 | MS.gene045299:CDS |
| GGATGGCGTAATCTGTTGTG+AGG | 0.646267 | 3.1:-64759305 | MS.gene045299:CDS |
| CGAGTGATGAAATGGAAACA+CGG | 0.646958 | 3.1:-64756681 | MS.gene045299:CDS |
| CTGCTACTATGCACATGGAG+AGG | 0.651839 | 3.1:-64766039 | MS.gene045299:CDS |
| AGGAGAACCGTAGTTTCCAG+AGG | 0.651888 | 3.1:-64766019 | MS.gene045299:CDS |
| AGCTGCTGAAGGATAAGCTG+CGG | 0.660445 | 3.1:-64758940 | MS.gene045299:CDS |
| GATGACGAGCATGCACAGAA+GGG | 0.661662 | 3.1:+64757123 | None:intergenic |
| ATTCATGATGACTATATCCG+AGG | 0.671055 | 3.1:+64764819 | None:intergenic |
| CATAAAGGAAGAAGGTCAAG+GGG | 0.672134 | 3.1:-64769142 | MS.gene045299:CDS |
| AAGCTTGAATATGCATCCCG+AGG | 0.674899 | 3.1:+64760198 | None:intergenic |
| GAGGTGACCTCTAAGAACCC+AGG | 0.676062 | 3.1:+64764838 | None:intergenic |
| CCTGCTGAAATAATTCAGGA+TGG | 0.681187 | 3.1:-64759322 | MS.gene045299:CDS |
| CCTTTATAATCGAAGCAGAG+AGG | 0.688981 | 3.1:+64759095 | None:intergenic |
| GCATTACAGAGAAACAAATG+AGG | 0.696255 | 3.1:-64765614 | MS.gene045299:intron |
| TGGGTTCTTAGAGGTCACCT+CGG | 0.705452 | 3.1:-64764836 | MS.gene045299:CDS |
| GATGATAGCTCAGAATCTGG+AGG | 0.706195 | 3.1:-64759073 | MS.gene045299:CDS |
| ATTGGCATAACAATATTCTG+GGG | 0.709888 | 3.1:+64760134 | None:intergenic |
| TGAGGGGTTACCAGACTCGG+AGG | 0.712583 | 3.1:-64757348 | MS.gene045299:CDS |
| AAGCCCAGGTAGAATCCGAG+GGG | 0.750615 | 3.1:+64759368 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64756588 | 64769172 | 64756588 | ID=MS.gene045299 |
| chr3.1 | mRNA | 64756588 | 64769172 | 64756588 | ID=MS.gene045299.t1;Parent=MS.gene045299 |
| chr3.1 | exon | 64769112 | 64769172 | 64769112 | ID=MS.gene045299.t1.exon1;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64769112 | 64769172 | 64769112 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64766941 | 64767072 | 64766941 | ID=MS.gene045299.t1.exon2;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64766941 | 64767072 | 64766941 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64766707 | 64766822 | 64766707 | ID=MS.gene045299.t1.exon3;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64766707 | 64766822 | 64766707 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64765996 | 64766084 | 64765996 | ID=MS.gene045299.t1.exon4;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64765996 | 64766084 | 64765996 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64765615 | 64765660 | 64765615 | ID=MS.gene045299.t1.exon5;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64765615 | 64765660 | 64765615 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64764635 | 64764992 | 64764635 | ID=MS.gene045299.t1.exon6;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64764635 | 64764992 | 64764635 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64760921 | 64761072 | 64760921 | ID=MS.gene045299.t1.exon7;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64760921 | 64761072 | 64760921 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64760437 | 64760527 | 64760437 | ID=MS.gene045299.t1.exon8;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64760437 | 64760527 | 64760437 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64760122 | 64760342 | 64760122 | ID=MS.gene045299.t1.exon9;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64760122 | 64760342 | 64760122 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64758740 | 64759419 | 64758740 | ID=MS.gene045299.t1.exon10;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64758740 | 64759419 | 64758740 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64757587 | 64758145 | 64757587 | ID=MS.gene045299.t1.exon11;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64757587 | 64758145 | 64757587 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64757296 | 64757377 | 64757296 | ID=MS.gene045299.t1.exon12;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64757296 | 64757377 | 64757296 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64757085 | 64757254 | 64757085 | ID=MS.gene045299.t1.exon13;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64757085 | 64757254 | 64757085 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| chr3.1 | exon | 64756588 | 64756719 | 64756588 | ID=MS.gene045299.t1.exon14;Parent=MS.gene045299.t1 |
| chr3.1 | CDS | 64756588 | 64756719 | 64756588 | ID=cds.MS.gene045299.t1;Parent=MS.gene045299.t1 |
| Gene Sequence |
| Protein sequence |