Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045326.t1 | XP_024635450.1 | 90.9 | 373 | 18 | 3 | 1 | 371 | 53 | 411 | 1.90E-189 | 671.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045326.t1 | G7JBC2 | 90.9 | 373 | 18 | 3 | 1 | 371 | 1 | 359 | 1.3e-189 | 671.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045326.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045326.t1 | MTR_3g084750 | 90.617 | 373 | 19 | 3 | 1 | 371 | 53 | 411 | 0.0 | 660 |
| MS.gene045326.t1 | MTR_3g084750 | 90.349 | 373 | 20 | 3 | 1 | 371 | 1 | 359 | 0.0 | 659 |
| MS.gene045326.t1 | MTR_1g015930 | 46.185 | 249 | 130 | 3 | 44 | 292 | 50 | 294 | 3.56e-63 | 206 |
| MS.gene045326.t1 | MTR_1g019050 | 33.203 | 256 | 138 | 8 | 37 | 284 | 43 | 273 | 1.43e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045326.t1 | AT4G12240 | 56.977 | 344 | 126 | 5 | 38 | 371 | 30 | 361 | 3.53e-135 | 390 |
| MS.gene045326.t1 | AT5G52010 | 46.400 | 250 | 128 | 4 | 42 | 291 | 71 | 314 | 6.20e-63 | 206 |
Find 90 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTATTCTGAGCTTAT+TGG | 0.177466 | 3.4:+79311495 | None:intergenic |
| AGCTGAAACGGGCAGGGTTT+TGG | 0.228799 | 3.4:-79311099 | MS.gene045326:CDS |
| TATGTAGAGTAGGGCTGTTC+TGG | 0.246065 | 3.4:-79311564 | MS.gene045326:CDS |
| AGAATAGCTGCAGCTTCTTT+TGG | 0.246225 | 3.4:-79311484 | MS.gene045326:CDS |
| TGTCTCAAGACTGTTGTTAT+TGG | 0.251511 | 3.4:-79310926 | MS.gene045326:CDS |
| GTCTCAAGACTGTTGTTATT+GGG | 0.278322 | 3.4:-79310925 | MS.gene045326:CDS |
| AGGGAGTAGAAAGGTGAAAT+TGG | 0.313386 | 3.4:-79311209 | MS.gene045326:CDS |
| TGAGACGACACTGTCATTCT+TGG | 0.314624 | 3.4:-79311627 | MS.gene045326:CDS |
| GAGACGACACTGTCATTCTT+GGG | 0.319372 | 3.4:-79311626 | MS.gene045326:CDS |
| GGGTAAGTATGCTATGAAAA+TGG | 0.326589 | 3.4:-79311185 | MS.gene045326:CDS |
| TTCATAAGGTGGGATTGAAT+TGG | 0.333130 | 3.4:+79311522 | None:intergenic |
| TTGGGGTCACGGAAGGATTT+CGG | 0.339709 | 3.4:-79311608 | MS.gene045326:CDS |
| TCATAGGCGGGTTGAGTGTT+TGG | 0.351038 | 3.4:-79311005 | MS.gene045326:CDS |
| AGCTTATTGGCAACTTCATA+AGG | 0.365446 | 3.4:+79311508 | None:intergenic |
| ACAGGAACTGTTGTATCGTT+TGG | 0.373770 | 3.4:-79311380 | MS.gene045326:CDS |
| CTGTATCGGTTGTGGAAAAC+TGG | 0.377175 | 3.4:-79310814 | MS.gene045326:CDS |
| GTTGTATCGTTTGGAGGATA+AGG | 0.381598 | 3.4:-79311371 | MS.gene045326:CDS |
| CTCATGTTTGTCGTGTTTGT+GGG | 0.391232 | 3.4:-79311327 | MS.gene045326:CDS |
| GGGTTCAAACTGTGTTAGAT+AGG | 0.398462 | 3.4:-79311078 | MS.gene045326:CDS |
| CCTCATGTTTGTCGTGTTTG+TGG | 0.413883 | 3.4:-79311328 | MS.gene045326:CDS |
| GCCAAACCATACCCAACTTT+AGG | 0.418960 | 3.4:+79311127 | None:intergenic |
| TCCTAAAGTTGGGTATGGTT+TGG | 0.425982 | 3.4:-79311128 | MS.gene045326:CDS |
| TTGACTCCTAAAGTTGGGTA+TGG | 0.429889 | 3.4:-79311133 | MS.gene045326:CDS |
| TCATAAGGTGGGATTGAATT+GGG | 0.443856 | 3.4:+79311523 | None:intergenic |
| TTTGATGGGGAAGGCGAAGA+AGG | 0.453176 | 3.4:-79310840 | MS.gene045326:CDS |
| AAATTAGACTCCGATGATAA+TGG | 0.457209 | 3.4:-79310623 | MS.gene045326:CDS |
| TTGTATCGTTTGGAGGATAA+GGG | 0.462961 | 3.4:-79311370 | MS.gene045326:CDS |
| GCTGATGAGCTGAAACGGGC+AGG | 0.464292 | 3.4:-79311106 | MS.gene045326:CDS |
| TGGTGGATATGATGGATCAT+AGG | 0.472905 | 3.4:-79311021 | MS.gene045326:CDS |
| TCGTGATATATTGAAAAGAT+TGG | 0.474466 | 3.4:-79310786 | MS.gene045326:CDS |
| TGAGTGTTTGGTTCTTGTAT+CGG | 0.489683 | 3.4:-79310993 | MS.gene045326:CDS |
| TCTCAAGACTGTTGTTATTG+GGG | 0.494985 | 3.4:-79310924 | MS.gene045326:CDS |
| TATTGCATTGCAAAAGCATA+TGG | 0.499781 | 3.4:-79311041 | MS.gene045326:CDS |
| CACTGTCATTCTTGGGGTCA+CGG | 0.505218 | 3.4:-79311619 | MS.gene045326:CDS |
| ACTCTACATAGCTTCTCATT+CGG | 0.506498 | 3.4:+79311577 | None:intergenic |
| GAAGGAGGCTGTATCGGTTG+TGG | 0.514904 | 3.4:-79310822 | MS.gene045326:CDS |
| GCAGTGATGGAGTCTTGAAA+AGG | 0.516098 | 3.4:-79310895 | MS.gene045326:CDS |
| ATGTAGAGTAGGGCTGTTCT+GGG | 0.518539 | 3.4:-79311563 | MS.gene045326:CDS |
| GTTTGGCTGATGAGCTGAAA+CGG | 0.521781 | 3.4:-79311111 | MS.gene045326:CDS |
| GGCGAAGAAGGAGGCTGTAT+CGG | 0.522314 | 3.4:-79310828 | MS.gene045326:CDS |
| AAAGCATATGGTGGATATGA+TGG | 0.523680 | 3.4:-79311029 | MS.gene045326:CDS |
| GTCATTCTTGGGGTCACGGA+AGG | 0.525218 | 3.4:-79311615 | MS.gene045326:CDS |
| GATGCAGTTCCTAAAACATC+CGG | 0.535152 | 3.4:-79310716 | MS.gene045326:CDS |
| GGAACTGTTGTATCGTTTGG+AGG | 0.537669 | 3.4:-79311377 | MS.gene045326:CDS |
| GAAAATGGAAAAGTATAAGA+AGG | 0.542297 | 3.4:-79311170 | MS.gene045326:CDS |
| TCGTGAGAGGAGGAAAGAAC+AGG | 0.542932 | 3.4:-79311398 | MS.gene045326:CDS |
| CTCCTCTCACGAACAACGTG+GGG | 0.546733 | 3.4:+79311409 | None:intergenic |
| AATGAGAAGCTATGTAGAGT+AGG | 0.549536 | 3.4:-79311574 | MS.gene045326:CDS |
| AAGGCGGAATCAGATAGAAT+CGG | 0.553848 | 3.4:-79311236 | MS.gene045326:CDS |
| TATTGGCAACTTCATAAGGT+GGG | 0.553988 | 3.4:+79311512 | None:intergenic |
| AGAATATTCTACAGAACTTG+AGG | 0.554247 | 3.4:+79311689 | None:intergenic |
| TTTGGCTGATGAGCTGAAAC+GGG | 0.555204 | 3.4:-79311110 | MS.gene045326:CDS |
| ACAAGGATGACAGAGGTCCT+TGG | 0.556458 | 3.4:-79310649 | MS.gene045326:CDS |
| TGGAGTTGTTCGACATATGG+TGG | 0.559762 | 3.4:-79311464 | MS.gene045326:CDS |
| ATGAGAAGCTATGTAGAGTA+GGG | 0.561703 | 3.4:-79311573 | MS.gene045326:CDS |
| CTGATGAGCTGAAACGGGCA+GGG | 0.566688 | 3.4:-79311105 | MS.gene045326:CDS |
| ATCGGCTAGAGGGAGTAGAA+AGG | 0.569230 | 3.4:-79311218 | MS.gene045326:CDS |
| ATCTTCAATATCATCAACTC+CGG | 0.570586 | 3.4:+79310697 | None:intergenic |
| GGATATGATGGATCATAGGC+GGG | 0.572337 | 3.4:-79311017 | MS.gene045326:CDS |
| GAGTAGAAAGGTGAAATTGG+TGG | 0.573655 | 3.4:-79311206 | MS.gene045326:CDS |
| ATCAGATAGAATCGGCTAGA+GGG | 0.575206 | 3.4:-79311228 | MS.gene045326:CDS |
| ATTTGCAACACCATTATCAT+CGG | 0.578456 | 3.4:+79310613 | None:intergenic |
| ATGAGCGTGAGCATGCGAAA+AGG | 0.580807 | 3.4:-79311255 | MS.gene045326:CDS |
| TAAGGTGGGATTGAATTGGG+TGG | 0.598304 | 3.4:+79311526 | None:intergenic |
| TCCTCCTCTCACGAACAACG+TGG | 0.601028 | 3.4:+79311407 | None:intergenic |
| AACAAATGTTTGAATGCCAG+TGG | 0.602266 | 3.4:+79311654 | None:intergenic |
| AGAATGACAGTGTCGTCTCA+AGG | 0.604787 | 3.4:+79311630 | None:intergenic |
| CCCACGTTGTTCGTGAGAGG+AGG | 0.604916 | 3.4:-79311408 | MS.gene045326:CDS |
| AATGCAATATCCGCAGCTTG+CGG | 0.606975 | 3.4:+79311055 | None:intergenic |
| AGACGACACTGTCATTCTTG+GGG | 0.607766 | 3.4:-79311625 | MS.gene045326:CDS |
| AGTAGAAAGGTGAAATTGGT+GGG | 0.609374 | 3.4:-79311205 | MS.gene045326:CDS |
| TGCATTGCAAAAGCATATGG+TGG | 0.610349 | 3.4:-79311038 | MS.gene045326:CDS |
| TTCTACACAATAGAAGCCAC+TGG | 0.610989 | 3.4:-79311670 | MS.gene045326:CDS |
| GTGGACATATAACCCAGAAG+TGG | 0.612100 | 3.4:-79310762 | MS.gene045326:CDS |
| TTATTGGCAACTTCATAAGG+TGG | 0.612373 | 3.4:+79311511 | None:intergenic |
| CCTCCTCTCACGAACAACGT+GGG | 0.620111 | 3.4:+79311408 | None:intergenic |
| GATGGGGAAGGCGAAGAAGG+AGG | 0.621967 | 3.4:-79310837 | MS.gene045326:CDS |
| AATCAGATAGAATCGGCTAG+AGG | 0.623094 | 3.4:-79311229 | MS.gene045326:CDS |
| ATGTTTGTCGTGTTTGTGGG+AGG | 0.623967 | 3.4:-79311324 | MS.gene045326:CDS |
| AGCGTGAGCATGCGAAAAGG+CGG | 0.626856 | 3.4:-79311252 | MS.gene045326:CDS |
| AGGATGACAGAGGTCCTTGG+TGG | 0.631079 | 3.4:-79310646 | MS.gene045326:CDS |
| GTTAGATAGGCCGCAAGCTG+CGG | 0.632475 | 3.4:-79311065 | MS.gene045326:CDS |
| TCATATTGATGATGACTACA+AGG | 0.634259 | 3.4:-79310666 | MS.gene045326:CDS |
| TTATGAAGGAAGCAAAGCTA+CGG | 0.640003 | 3.4:-79310949 | MS.gene045326:CDS |
| TGGATATGATGGATCATAGG+CGG | 0.652070 | 3.4:-79311018 | MS.gene045326:CDS |
| ATATATTGAAAAGATTGGAG+TGG | 0.659405 | 3.4:-79310781 | MS.gene045326:CDS |
| CCACAAACACGACAAACATG+AGG | 0.661362 | 3.4:+79311328 | None:intergenic |
| TCCTCTCACGAACAACGTGG+GGG | 0.698129 | 3.4:+79311410 | None:intergenic |
| TCGGAGTCTAATTTCCACCA+AGG | 0.709650 | 3.4:+79310632 | None:intergenic |
| GATGACTACAAGGATGACAG+AGG | 0.730694 | 3.4:-79310656 | MS.gene045326:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATATTGAAAAGATTGGAG+TGG | - | chr3.4:79311526-79311545 | MS.gene045326:CDS | 25.0% |
| ! | GGATAAAAAGAAACATAACT+TGG | - | chr3.4:79311566-79311585 | MS.gene045326:CDS | 25.0% |
| ! | TCGTGATATATTGAAAAGAT+TGG | - | chr3.4:79311521-79311540 | MS.gene045326:CDS | 25.0% |
| !! | GAAAATGGAAAAGTATAAGA+AGG | - | chr3.4:79311137-79311156 | MS.gene045326:CDS | 25.0% |
| AAATTAGACTCCGATGATAA+TGG | - | chr3.4:79311684-79311703 | MS.gene045326:CDS | 30.0% | |
| AGAATATTCTACAGAACTTG+AGG | + | chr3.4:79310621-79310640 | None:intergenic | 30.0% | |
| ATCTTCAATATCATCAACTC+CGG | + | chr3.4:79311613-79311632 | None:intergenic | 30.0% | |
| ATTTGCAACACCATTATCAT+CGG | + | chr3.4:79311697-79311716 | None:intergenic | 30.0% | |
| ! | GTTTCTTTTTATCCACTTCT+GGG | + | chr3.4:79311560-79311579 | None:intergenic | 30.0% |
| ! | TATTGCATTGCAAAAGCATA+TGG | - | chr3.4:79311266-79311285 | MS.gene045326:CDS | 30.0% |
| ! | TGATTTTGTCGATGTTATGA+AGG | - | chr3.4:79311344-79311363 | MS.gene045326:CDS | 30.0% |
| ! | TGTTTCTTTTTATCCACTTC+TGG | + | chr3.4:79311561-79311580 | None:intergenic | 30.0% |
| !! | TCATATTGATGATGACTACA+AGG | - | chr3.4:79311641-79311660 | MS.gene045326:CDS | 30.0% |
| AACAAATGTTTGAATGCCAG+TGG | + | chr3.4:79310656-79310675 | None:intergenic | 35.0% | |
| AATGAGAAGCTATGTAGAGT+AGG | - | chr3.4:79310733-79310752 | MS.gene045326:CDS | 35.0% | |
| ACTCTACATAGCTTCTCATT+CGG | + | chr3.4:79310733-79310752 | None:intergenic | 35.0% | |
| AGCTTATTGGCAACTTCATA+AGG | + | chr3.4:79310802-79310821 | None:intergenic | 35.0% | |
| AGTAGAAAGGTGAAATTGGT+GGG | - | chr3.4:79311102-79311121 | MS.gene045326:CDS | 35.0% | |
| ATGAGAAGCTATGTAGAGTA+GGG | - | chr3.4:79310734-79310753 | MS.gene045326:CDS | 35.0% | |
| GGGTAAGTATGCTATGAAAA+TGG | - | chr3.4:79311122-79311141 | MS.gene045326:CDS | 35.0% | |
| TATTGGCAACTTCATAAGGT+GGG | + | chr3.4:79310798-79310817 | None:intergenic | 35.0% | |
| TCATAAGGTGGGATTGAATT+GGG | + | chr3.4:79310787-79310806 | None:intergenic | 35.0% | |
| TGTCTCAAGACTGTTGTTAT+TGG | - | chr3.4:79311381-79311400 | MS.gene045326:CDS | 35.0% | |
| TTATGAAGGAAGCAAAGCTA+CGG | - | chr3.4:79311358-79311377 | MS.gene045326:CDS | 35.0% | |
| TTATTGGCAACTTCATAAGG+TGG | + | chr3.4:79310799-79310818 | None:intergenic | 35.0% | |
| TTCATAAGGTGGGATTGAAT+TGG | + | chr3.4:79310788-79310807 | None:intergenic | 35.0% | |
| TTGTATCGTTTGGAGGATAA+GGG | - | chr3.4:79310937-79310956 | MS.gene045326:CDS | 35.0% | |
| ! | GTCTCAAGACTGTTGTTATT+GGG | - | chr3.4:79311382-79311401 | MS.gene045326:CDS | 35.0% |
| ! | TCTCAAGACTGTTGTTATTG+GGG | - | chr3.4:79311383-79311402 | MS.gene045326:CDS | 35.0% |
| !! | AAAGCATATGGTGGATATGA+TGG | - | chr3.4:79311278-79311297 | MS.gene045326:CDS | 35.0% |
| !! | TGAGTGTTTGGTTCTTGTAT+CGG | - | chr3.4:79311314-79311333 | MS.gene045326:CDS | 35.0% |
| !! | TTCTTGGGAGGATATTTTGA+TGG | - | chr3.4:79311452-79311471 | MS.gene045326:CDS | 35.0% |
| !!! | CTGTTTTGACTCCTAAAGTT+GGG | - | chr3.4:79311169-79311188 | MS.gene045326:CDS | 35.0% |
| !!! | TCTTGGGAGGATATTTTGAT+GGG | - | chr3.4:79311453-79311472 | MS.gene045326:CDS | 35.0% |
| !!! | TTTTGGAGTTGTTCGACATA+TGG | - | chr3.4:79310840-79310859 | MS.gene045326:CDS | 35.0% |
| AAGGCGGAATCAGATAGAAT+CGG | - | chr3.4:79311071-79311090 | MS.gene045326:CDS | 40.0% | |
| AATCAGATAGAATCGGCTAG+AGG | - | chr3.4:79311078-79311097 | MS.gene045326:CDS | 40.0% | |
| ACAGGAACTGTTGTATCGTT+TGG | - | chr3.4:79310927-79310946 | MS.gene045326:CDS | 40.0% | |
| AGGGAGTAGAAAGGTGAAAT+TGG | - | chr3.4:79311098-79311117 | MS.gene045326:CDS | 40.0% | |
| ATCAGATAGAATCGGCTAGA+GGG | - | chr3.4:79311079-79311098 | MS.gene045326:CDS | 40.0% | |
| CTCATGTTTGTCGTGTTTGT+GGG | - | chr3.4:79310980-79310999 | MS.gene045326:CDS | 40.0% | |
| CTCCCAAGAAAAAGCAGTAT+CGG | + | chr3.4:79311442-79311461 | None:intergenic | 40.0% | |
| GAGTAGAAAGGTGAAATTGG+TGG | - | chr3.4:79311101-79311120 | MS.gene045326:CDS | 40.0% | |
| GATGCAGTTCCTAAAACATC+CGG | - | chr3.4:79311591-79311610 | MS.gene045326:CDS | 40.0% | |
| GGGTTCAAACTGTGTTAGAT+AGG | - | chr3.4:79311229-79311248 | MS.gene045326:CDS | 40.0% | |
| GTTGTATCGTTTGGAGGATA+AGG | - | chr3.4:79310936-79310955 | MS.gene045326:CDS | 40.0% | |
| TCCTAAAGTTGGGTATGGTT+TGG | - | chr3.4:79311179-79311198 | MS.gene045326:CDS | 40.0% | |
| TGCAGCTATTCTGAGCTTAT+TGG | + | chr3.4:79310815-79310834 | None:intergenic | 40.0% | |
| TTCTACACAATAGAAGCCAC+TGG | - | chr3.4:79310637-79310656 | MS.gene045326:CDS | 40.0% | |
| TTGACTCCTAAAGTTGGGTA+TGG | - | chr3.4:79311174-79311193 | MS.gene045326:CDS | 40.0% | |
| ! | AGAATAGCTGCAGCTTCTTT+TGG | - | chr3.4:79310823-79310842 | MS.gene045326:CDS | 40.0% |
| ! | TCATCAACTCCGGATGTTTT+AGG | + | chr3.4:79311603-79311622 | None:intergenic | 40.0% |
| ! | TGCATTGCAAAAGCATATGG+TGG | - | chr3.4:79311269-79311288 | MS.gene045326:CDS | 40.0% |
| !! | ATTGGGGATTTTAGCAGTGA+TGG | - | chr3.4:79311399-79311418 | MS.gene045326:CDS | 40.0% |
| !! | TGGATATGATGGATCATAGG+CGG | - | chr3.4:79311289-79311308 | MS.gene045326:CDS | 40.0% |
| !! | TGGTGGATATGATGGATCAT+AGG | - | chr3.4:79311286-79311305 | MS.gene045326:CDS | 40.0% |
| !!! | CTTGGGAGGATATTTTGATG+GGG | - | chr3.4:79311454-79311473 | MS.gene045326:CDS | 40.0% |
| !!! | GCTGTTTTGACTCCTAAAGT+TGG | - | chr3.4:79311168-79311187 | MS.gene045326:CDS | 40.0% |
| !!! | TGCCGATACTGCTTTTTCTT+GGG | - | chr3.4:79311437-79311456 | MS.gene045326:CDS | 40.0% |
| AATGCAATATCCGCAGCTTG+CGG | + | chr3.4:79311255-79311274 | None:intergenic | 45.0% | |
| AGAATGACAGTGTCGTCTCA+AGG | + | chr3.4:79310680-79310699 | None:intergenic | 45.0% | |
| AGACGACACTGTCATTCTTG+GGG | - | chr3.4:79310682-79310701 | MS.gene045326:CDS | 45.0% | |
| ATGTAGAGTAGGGCTGTTCT+GGG | - | chr3.4:79310744-79310763 | MS.gene045326:CDS | 45.0% | |
| ATGTTTGTCGTGTTTGTGGG+AGG | - | chr3.4:79310983-79311002 | MS.gene045326:CDS | 45.0% | |
| CCACAAACACGACAAACATG+AGG | + | chr3.4:79310982-79311001 | None:intergenic | 45.0% | |
| CCTCATGTTTGTCGTGTTTG+TGG | - | chr3.4:79310979-79310998 | MS.gene045326:CDS | 45.0% | |
| GAGACGACACTGTCATTCTT+GGG | - | chr3.4:79310681-79310700 | MS.gene045326:CDS | 45.0% | |
| GATGACTACAAGGATGACAG+AGG | - | chr3.4:79311651-79311670 | MS.gene045326:CDS | 45.0% | |
| GCCAAACCATACCCAACTTT+AGG | + | chr3.4:79311183-79311202 | None:intergenic | 45.0% | |
| GGAACTGTTGTATCGTTTGG+AGG | - | chr3.4:79310930-79310949 | MS.gene045326:CDS | 45.0% | |
| GTGGACATATAACCCAGAAG+TGG | - | chr3.4:79311545-79311564 | MS.gene045326:CDS | 45.0% | |
| GTTTGGCTGATGAGCTGAAA+CGG | - | chr3.4:79311196-79311215 | MS.gene045326:CDS | 45.0% | |
| TAAGGTGGGATTGAATTGGG+TGG | + | chr3.4:79310784-79310803 | None:intergenic | 45.0% | |
| TATGTAGAGTAGGGCTGTTC+TGG | - | chr3.4:79310743-79310762 | MS.gene045326:CDS | 45.0% | |
| TCGGAGTCTAATTTCCACCA+AGG | + | chr3.4:79311678-79311697 | None:intergenic | 45.0% | |
| TGAGACGACACTGTCATTCT+TGG | - | chr3.4:79310680-79310699 | MS.gene045326:CDS | 45.0% | |
| TGGAGTTGTTCGACATATGG+TGG | - | chr3.4:79310843-79310862 | MS.gene045326:CDS | 45.0% | |
| TTTGGCTGATGAGCTGAAAC+GGG | - | chr3.4:79311197-79311216 | MS.gene045326:CDS | 45.0% | |
| ! | GCAGTGATGGAGTCTTGAAA+AGG | - | chr3.4:79311412-79311431 | MS.gene045326:CDS | 45.0% |
| !! | CTGTATCGGTTGTGGAAAAC+TGG | - | chr3.4:79311493-79311512 | MS.gene045326:CDS | 45.0% |
| !! | GGATATGATGGATCATAGGC+GGG | - | chr3.4:79311290-79311309 | MS.gene045326:CDS | 45.0% |
| !!! | CGATACTGCTTTTTCTTGGG+AGG | - | chr3.4:79311440-79311459 | MS.gene045326:CDS | 45.0% |
| !!! | CTGCCGATACTGCTTTTTCT+TGG | - | chr3.4:79311436-79311455 | MS.gene045326:CDS | 45.0% |
| !!! | GGAGGATATTTTGATGGGGA+AGG | - | chr3.4:79311458-79311477 | MS.gene045326:CDS | 45.0% |
| ACAAGGATGACAGAGGTCCT+TGG | - | chr3.4:79311658-79311677 | MS.gene045326:CDS | 50.0% | |
| ATCGGCTAGAGGGAGTAGAA+AGG | - | chr3.4:79311089-79311108 | MS.gene045326:CDS | 50.0% | |
| ATGAGCGTGAGCATGCGAAA+AGG | - | chr3.4:79311052-79311071 | MS.gene045326:CDS | 50.0% | |
| CACTGTCATTCTTGGGGTCA+CGG | - | chr3.4:79310688-79310707 | MS.gene045326:CDS | 50.0% | |
| GGGGGACATTGCTAAAAGTG+TGG | + | chr3.4:79310882-79310901 | None:intergenic | 50.0% | |
| TCGTGAGAGGAGGAAAGAAC+AGG | - | chr3.4:79310909-79310928 | MS.gene045326:CDS | 50.0% | |
| TTGGGGTCACGGAAGGATTT+CGG | - | chr3.4:79310699-79310718 | MS.gene045326:CDS | 50.0% | |
| TTTGATGGGGAAGGCGAAGA+AGG | - | chr3.4:79311467-79311486 | MS.gene045326:CDS | 50.0% | |
| !! | TCATAGGCGGGTTGAGTGTT+TGG | - | chr3.4:79311302-79311321 | MS.gene045326:CDS | 50.0% |
| AGCGTGAGCATGCGAAAAGG+CGG | - | chr3.4:79311055-79311074 | MS.gene045326:CDS | 55.0% | |
| AGGATGACAGAGGTCCTTGG+TGG | - | chr3.4:79311661-79311680 | MS.gene045326:CDS | 55.0% | |
| CCTCCTCTCACGAACAACGT+GGG | + | chr3.4:79310902-79310921 | None:intergenic | 55.0% | |
| CTCCTCTCACGAACAACGTG+GGG | + | chr3.4:79310901-79310920 | None:intergenic | 55.0% | |
| CTGATGAGCTGAAACGGGCA+GGG | - | chr3.4:79311202-79311221 | MS.gene045326:CDS | 55.0% | |
| GGCGAAGAAGGAGGCTGTAT+CGG | - | chr3.4:79311479-79311498 | MS.gene045326:CDS | 55.0% | |
| GTCATTCTTGGGGTCACGGA+AGG | - | chr3.4:79310692-79310711 | MS.gene045326:CDS | 55.0% | |
| GTTAGATAGGCCGCAAGCTG+CGG | - | chr3.4:79311242-79311261 | MS.gene045326:CDS | 55.0% | |
| TCCTCCTCTCACGAACAACG+TGG | + | chr3.4:79310903-79310922 | None:intergenic | 55.0% | |
| TCCTCTCACGAACAACGTGG+GGG | + | chr3.4:79310900-79310919 | None:intergenic | 55.0% | |
| ! | AGCTGAAACGGGCAGGGTTT+TGG | - | chr3.4:79311208-79311227 | MS.gene045326:CDS | 55.0% |
| ! | GCTGAAACGGGCAGGGTTTT+GGG | - | chr3.4:79311209-79311228 | MS.gene045326:CDS | 55.0% |
| !! | GAAGGAGGCTGTATCGGTTG+TGG | - | chr3.4:79311485-79311504 | MS.gene045326:CDS | 55.0% |
| CCCACGTTGTTCGTGAGAGG+AGG | - | chr3.4:79310899-79310918 | MS.gene045326:CDS | 60.0% | |
| GATGGGGAAGGCGAAGAAGG+AGG | - | chr3.4:79311470-79311489 | MS.gene045326:CDS | 60.0% | |
| GCTGATGAGCTGAAACGGGC+AGG | - | chr3.4:79311201-79311220 | MS.gene045326:CDS | 60.0% | |
| TCCCCCACGTTGTTCGTGAG+AGG | - | chr3.4:79310896-79310915 | MS.gene045326:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79310607 | 79311722 | 79310607 | ID=MS.gene045326 |
| chr3.4 | mRNA | 79310607 | 79311722 | 79310607 | ID=MS.gene045326.t1;Parent=MS.gene045326 |
| chr3.4 | exon | 79310607 | 79311722 | 79310607 | ID=MS.gene045326.t1.exon1;Parent=MS.gene045326.t1 |
| chr3.4 | CDS | 79310607 | 79311722 | 79310607 | ID=cds.MS.gene045326.t1;Parent=MS.gene045326.t1 |
| Gene Sequence |
| Protein sequence |
