AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045493

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045493.t1 MTR_4g079960 93.103 319 13 2 1 316 1 313 0.0 538
MS.gene045493.t1 MTR_4g079960 92.857 308 13 2 1 305 1 302 0.0 510
MS.gene045493.t1 MTR_4g079960 91.935 310 16 2 1 307 1 304 0.0 509
MS.gene045493.t1 MTR_2g016140 51.768 311 121 6 19 306 11 315 4.48e-88 267
MS.gene045493.t1 MTR_2g016140 52.090 311 119 7 19 306 11 314 5.08e-87 264
MS.gene045493.t1 MTR_8g022290 38.567 293 144 7 27 300 64 339 6.39e-45 157
MS.gene045493.t1 MTR_2g092960 33.924 395 159 11 8 308 23 409 1.74e-39 148
MS.gene045493.t1 MTR_2g102227 30.345 290 144 7 14 296 255 493 2.97e-26 108
MS.gene045493.t1 MTR_1g061600 37.255 102 57 3 31 131 133 228 2.31e-16 79.7
MS.gene045493.t1 MTR_6g486270 38.947 95 52 2 31 124 130 219 2.94e-16 79.0
MS.gene045493.t1 MTR_3g014280 25.524 286 177 9 26 294 33 299 1.12e-14 73.9
MS.gene045493.t1 MTR_4g117990 35.922 103 63 2 30 131 43 143 5.65e-14 72.0
MS.gene045493.t1 MTR_1g037650 33.333 102 60 2 26 127 33 126 5.17e-12 64.3
MS.gene045493.t1 MTR_7g081190 41.429 70 40 1 30 99 45 113 5.10e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045493.t1 AT3G58630 47.239 326 123 9 1 302 1 301 9.22e-74 229
MS.gene045493.t1 AT3G58630 47.239 326 123 9 1 302 1 301 1.29e-73 229
MS.gene045493.t1 AT3G11100 40.956 293 119 7 13 305 9 247 6.61e-50 166
MS.gene045493.t1 AT5G05550 40.569 281 113 6 27 307 20 246 1.20e-49 166
MS.gene045493.t1 AT5G05550 40.502 279 112 6 27 305 20 244 5.42e-49 164
MS.gene045493.t1 AT5G05550 40.433 277 111 6 27 303 20 242 5.60e-48 161
MS.gene045493.t1 AT3G14180 59.615 104 38 2 27 130 80 179 2.74e-34 130
MS.gene045493.t1 AT1G54060 51.485 101 44 2 27 127 90 185 7.38e-22 95.1
MS.gene045493.t1 AT3G24490 27.372 274 147 6 31 304 90 311 1.17e-21 94.0
MS.gene045493.t1 AT3G10030 39.669 121 66 3 16 134 144 259 1.62e-20 92.4
MS.gene045493.t1 AT3G10030 39.669 121 66 3 16 134 144 259 1.79e-20 92.0
MS.gene045493.t1 AT3G54390 28.082 292 170 9 19 302 23 282 1.03e-16 79.3
MS.gene045493.t1 AT3G54390 28.082 292 170 9 19 302 39 298 1.03e-16 79.7
MS.gene045493.t1 AT2G44730 34.737 95 59 2 30 123 63 155 7.37e-12 65.9

Find 103 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGAAACCAAACTCCTTA+TGG 0.211114 4.2:-30314597 None:intergenic
ACAGAGACAAATGGTGGAAT+TGG 0.329589 4.2:+30314678 MS.gene045493:CDS
GATGCAGTTTGTGAAGGATT+TGG 0.330097 4.2:+30314711 MS.gene045493:CDS
CTTCCACCCTCATCGACGCC+TGG 0.342555 4.2:+30314011 MS.gene045493:CDS
ACGTCGCGCTTTCTTGTTAC+CGG 0.348904 4.2:-30314122 None:intergenic
GGCTGCTGCAGCGGCGGCTG+AGG 0.349218 4.2:+30314516 MS.gene045493:CDS
GACGAAGGTTACCGCGGTTA+AGG 0.349488 4.2:-30314051 None:intergenic
TCCCCGTCCGCGAAGACTGC+TGG 0.376207 4.2:+30313975 MS.gene045493:CDS
GGTGGAGACGGTGGAGATTG+AGG 0.380464 4.2:-30314355 None:intergenic
GATGGGACCCATAAGGAGTT+TGG 0.382677 4.2:+30314589 MS.gene045493:CDS
TCTGAAACCAAACTCCTTAT+GGG 0.394233 4.2:-30314596 None:intergenic
GTAACCTTCGTCAGAAAACT+TGG 0.396096 4.2:+30314062 MS.gene045493:CDS
AATGATCATAAATTTGAAAC+AGG 0.398889 4.2:-30314825 None:intergenic
CTGGTAACCGCCGTCGGATT+CGG 0.403172 4.2:-30314215 None:intergenic
ATCGTTCCGGCGGAATTTCT+CGG 0.404517 4.2:+30314483 MS.gene045493:CDS
GAGGGTGGAAGTTGCGTCTT+CGG 0.412190 4.2:-30313999 None:intergenic
TCTTCTTTAACGTGTCGATT+CGG 0.420026 4.2:-30314165 None:intergenic
AGTACAAGATCGAGAAAGCT+AGG 0.431421 4.2:+30314188 MS.gene045493:CDS
TTCCACCCTCATCGACGCCT+GGG 0.432995 4.2:+30314012 MS.gene045493:CDS
AAACGCACTAAACGTGCTTC+TGG 0.443118 4.2:+30314787 MS.gene045493:CDS
GTGTGGAGTCAGAGGAATGG+AGG 0.449241 4.2:+30314545 MS.gene045493:CDS
GTCCAGCAGTCTTCGCGGAC+GGG 0.450561 4.2:-30313977 None:intergenic
ACTAAACGTGCTTCTGGTTC+CGG 0.451057 4.2:+30314793 MS.gene045493:CDS
GGCGGCGTGGACGTCGTTGA+CGG 0.453788 4.2:-30314101 None:intergenic
CATCCGGTCGGTCCCCGATC+CGG 0.459199 4.2:+30314421 MS.gene045493:CDS
AAAGAGACGAAGCATCGTTC+CGG 0.461522 4.2:+30314470 MS.gene045493:CDS
CGCGGCGGCTGCTGCAGCGG+CGG 0.469482 4.2:+30314510 MS.gene045493:CDS
TGTGGAGTCAGAGGAATGGA+GGG 0.481728 4.2:+30314546 MS.gene045493:CDS
GACGGTGGAGATTGAGGAGG+TGG 0.483700 4.2:-30314349 None:intergenic
ACCGTCTCCACCGTCGCCTC+CGG 0.494561 4.2:+30314384 MS.gene045493:CDS
TCCAGCAGTCTTCGCGGACG+GGG 0.495685 4.2:-30313976 None:intergenic
GTTCGCGGCGGCTGCTGCAG+CGG 0.499569 4.2:+30314507 MS.gene045493:CDS
TGGAGTCAGAGGAATGGAGG+GGG 0.503575 4.2:+30314548 MS.gene045493:CDS
ACTCGTCTTGACGTTCTCAT+CGG 0.505614 4.2:+30314256 MS.gene045493:CDS
CAGTCTTCGCGGACGGGGAA+CGG 0.508470 4.2:-30313971 None:intergenic
GCGGAATTTCTCGGCGTTCG+CGG 0.513561 4.2:+30314492 MS.gene045493:CDS
GTTGATAGGTGACGGAGCTC+CGG 0.518538 4.2:-30313918 None:intergenic
CGCGGCGGAACGGAGTTGAT+AGG 0.521754 4.2:-30313932 None:intergenic
TCTCCCCGCCGGTGAATGTA+CGG 0.525928 4.2:+30314302 MS.gene045493:CDS
AGAAAACGATGGGACCCATA+AGG 0.527107 4.2:+30314582 MS.gene045493:CDS
GGTCCAGCAGTCTTCGCGGA+CGG 0.531762 4.2:-30313978 None:intergenic
GACGGTGGAGACGGTGGAGA+AGG 0.533943 4.2:-30314376 None:intergenic
GCCGGAGGCGACGGTGGAGA+CGG 0.537471 4.2:-30314385 None:intergenic
GGAGTAGACCGTACATTCAC+CGG 0.542070 4.2:-30314310 None:intergenic
TCAGAGAATGCAGTTATACA+TGG 0.544592 4.2:+30314738 MS.gene045493:CDS
GGCAGAAAGTGTGGAGTCAG+AGG 0.545717 4.2:+30314537 MS.gene045493:CDS
GTTCCGGATCGGGGACCGAC+CGG 0.547076 4.2:-30314424 None:intergenic
ATTATCCACGCCGGAGGCGA+CGG 0.547703 4.2:-30314394 None:intergenic
GTGGACGTCGTTGACGGCGT+CGG 0.549602 4.2:-30314095 None:intergenic
TTGAAACAGGTTAAGCTCAC+CGG 0.549616 4.2:-30314812 None:intergenic
GCAGAGGATGCAGTTTGTGA+AGG 0.549708 4.2:+30314705 MS.gene045493:CDS
GGCGATGACGACGGAAGACG+CGG 0.549924 4.2:-30313950 None:intergenic
CTTCGGTCCAGCAGTCTTCG+CGG 0.552125 4.2:-30313982 None:intergenic
GTCGAGGTAGCGTTCACCCC+AGG 0.553968 4.2:-30314029 None:intergenic
ACGGCGGTTACCAGAGTCCC+TGG 0.554940 4.2:+30314224 MS.gene045493:CDS
GGTGGAGACGGTGGAGAAGG+TGG 0.555662 4.2:-30314373 None:intergenic
TGGTTTCAGAGAGCTCGCTC+AGG 0.555951 4.2:+30314609 MS.gene045493:CDS
AAAGTGTGGAGTCAGAGGAA+TGG 0.557513 4.2:+30314542 MS.gene045493:CDS
AGCTTCAAAACAGAGACAAA+TGG 0.558007 4.2:+30314669 MS.gene045493:CDS
CGACGGAAGACGCGGCGGAA+CGG 0.559377 4.2:-30313942 None:intergenic
GTCAACGACGTCCACGCCGC+CGG 0.559754 4.2:+30314103 MS.gene045493:CDS
GACGGTGGAGAAGGTGGAGA+CGG 0.562074 4.2:-30314367 None:intergenic
GGCGTGGATAATCTCTCATC+CGG 0.563671 4.2:+30314405 MS.gene045493:CDS
TTCACCCCAGGCGTCGATGA+GGG 0.566151 4.2:-30314017 None:intergenic
GGTGGACGTTTGACGACGGT+TGG 0.571165 4.2:-30314331 None:intergenic
GGTTACCGCGGTTAAGGTCG+AGG 0.573221 4.2:-30314045 None:intergenic
ACCCCAGGCGTCGATGAGGG+TGG 0.576167 4.2:-30314014 None:intergenic
CTCCACCGTCGCCTCCGGCG+TGG 0.577896 4.2:+30314389 MS.gene045493:CDS
GTACAAGATCGAGAAAGCTA+GGG 0.590074 4.2:+30314189 MS.gene045493:CDS
ACGGGGAACGGCGATGACGA+CGG 0.590204 4.2:-30313959 None:intergenic
GAGACGAAGCATCGTTCCGG+CGG 0.597085 4.2:+30314473 MS.gene045493:CDS
TGGATAATCTCTCATCCGGT+CGG 0.599124 4.2:+30314409 MS.gene045493:CDS
CGTTTCATGGACATCATCGC+CGG 0.603278 4.2:+30313899 None:intergenic
ATCCACGCCGGAGGCGACGG+TGG 0.604964 4.2:-30314391 None:intergenic
AGAAAGGAAGAGAAAACGAT+GGG 0.606592 4.2:+30314572 MS.gene045493:CDS
CTTTCTTGTTACCGGCGGCG+TGG 0.607096 4.2:-30314114 None:intergenic
TCGTCAGAAAACTTGGCAAG+AGG 0.608905 4.2:+30314069 MS.gene045493:CDS
GTGGAGTCAGAGGAATGGAG+GGG 0.611126 4.2:+30314547 MS.gene045493:CDS
GGCGGCTGAGGCAGAAAGTG+TGG 0.614668 4.2:+30314528 MS.gene045493:CDS
TAGACCGTACATTCACCGGC+GGG 0.615042 4.2:-30314306 None:intergenic
GTTCACCCCAGGCGTCGATG+AGG 0.617071 4.2:-30314018 None:intergenic
GGAGGCGACGGTGGAGACGG+TGG 0.619172 4.2:-30314382 None:intergenic
TGGTGGAATTGGAGAAGCAG+AGG 0.620275 4.2:+30314689 MS.gene045493:CDS
TCCACCCTCATCGACGCCTG+GGG 0.621538 4.2:+30314013 MS.gene045493:CDS
GGAACGGAGTTGATAGGTGA+CGG 0.622230 4.2:-30313926 None:intergenic
GGGACTCTGGTAACCGCCGT+CGG 0.624801 4.2:-30314221 None:intergenic
GAATTTCTCGGCGTTCGCGG+CGG 0.637732 4.2:+30314495 MS.gene045493:CDS
GGTGGAGAAGGTGGAGACGG+TGG 0.638582 4.2:-30314364 None:intergenic
AAGAAAGGAAGAGAAAACGA+TGG 0.648071 4.2:+30314571 MS.gene045493:CDS
AGGAGGTGGACGTTTGACGA+CGG 0.650309 4.2:-30314335 None:intergenic
GGAGACGGTGGAGATTGAGG+AGG 0.652907 4.2:-30314352 None:intergenic
CGAACGCCGAGAAATTCCGC+CGG 0.653177 4.2:-30314489 None:intergenic
GCAGTTATACATGGAAACGC+AGG 0.653381 4.2:+30314747 MS.gene045493:CDS
TGAGAGATTATCCACGCCGG+AGG 0.660526 4.2:-30314400 None:intergenic
TTCAAAACAGAGACAAATGG+TGG 0.662111 4.2:+30314672 MS.gene045493:CDS
GCTAGGGTTTCCGAATCCGA+CGG 0.665069 4.2:+30314205 MS.gene045493:CDS
TCGCGCTTTCTTGTTACCGG+CGG 0.665856 4.2:-30314119 None:intergenic
AGGGTTTCCGAATCCGACGG+CGG 0.672515 4.2:+30314208 MS.gene045493:CDS
GATGACGACGGAAGACGCGG+CGG 0.700874 4.2:-30313947 None:intergenic
AGACCGTACATTCACCGGCG+GGG 0.706976 4.2:-30314305 None:intergenic
CGCTACCTCGACCTTAACCG+CGG 0.709531 4.2:+30314040 MS.gene045493:CDS
GTAGACCGTACATTCACCGG+CGG 0.721299 4.2:-30314307 None:intergenic
GGATGAGAGATTATCCACGC+CGG 0.738065 4.2:-30314403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATCATAAATTTGAAAC+AGG - chr4.2:30314828-30314847 None:intergenic 20.0%
AAGAAAGGAAGAGAAAACGA+TGG + chr4.2:30314571-30314590 MS.gene045493:CDS 35.0%
AGAAAGGAAGAGAAAACGAT+GGG + chr4.2:30314572-30314591 MS.gene045493:CDS 35.0%
AGCTTCAAAACAGAGACAAA+TGG + chr4.2:30314669-30314688 MS.gene045493:CDS 35.0%
TCAGAGAATGCAGTTATACA+TGG + chr4.2:30314738-30314757 MS.gene045493:CDS 35.0%
TTCAAAACAGAGACAAATGG+TGG + chr4.2:30314672-30314691 MS.gene045493:CDS 35.0%
! TCTGAAACCAAACTCCTTAT+GGG - chr4.2:30314599-30314618 None:intergenic 35.0%
!! TCTTCTTTAACGTGTCGATT+CGG - chr4.2:30314168-30314187 None:intergenic 35.0%
ACGTCAAGACGAGTGAAAAA+CGG - chr4.2:30314250-30314269 None:intergenic 40.0%
AGTACAAGATCGAGAAAGCT+AGG + chr4.2:30314188-30314207 MS.gene045493:CDS 40.0%
GATGCAGTTTGTGAAGGATT+TGG + chr4.2:30314711-30314730 MS.gene045493:CDS 40.0%
GTAACCTTCGTCAGAAAACT+TGG + chr4.2:30314062-30314081 MS.gene045493:CDS 40.0%
GTACAAGATCGAGAAAGCTA+GGG + chr4.2:30314189-30314208 MS.gene045493:CDS 40.0%
TTGAAACAGGTTAAGCTCAC+CGG - chr4.2:30314815-30314834 None:intergenic 40.0%
! ACAGAGACAAATGGTGGAAT+TGG + chr4.2:30314678-30314697 MS.gene045493:CDS 40.0%
!! CTCTGAAACCAAACTCCTTA+TGG - chr4.2:30314600-30314619 None:intergenic 40.0%
AAACGCACTAAACGTGCTTC+TGG + chr4.2:30314787-30314806 MS.gene045493:CDS 45.0%
AAAGTGTGGAGTCAGAGGAA+TGG + chr4.2:30314542-30314561 MS.gene045493:CDS 45.0%
AACACAAAAACGTCCGGCAA+TGG + chr4.2:30314444-30314463 MS.gene045493:CDS 45.0%
ACTCGTCTTGACGTTCTCAT+CGG + chr4.2:30314256-30314275 MS.gene045493:CDS 45.0%
AGAAAACGATGGGACCCATA+AGG + chr4.2:30314582-30314601 MS.gene045493:CDS 45.0%
ATCCGGAACACAAAAACGTC+CGG + chr4.2:30314438-30314457 MS.gene045493:CDS 45.0%
GCAGTTATACATGGAAACGC+AGG + chr4.2:30314747-30314766 MS.gene045493:CDS 45.0%
TCGTCAGAAAACTTGGCAAG+AGG + chr4.2:30314069-30314088 MS.gene045493:CDS 45.0%
TGGATAATCTCTCATCCGGT+CGG + chr4.2:30314409-30314428 MS.gene045493:CDS 45.0%
! ACGTTTTTGTGTTCCGGATC+GGG - chr4.2:30314437-30314456 None:intergenic 45.0%
! CTTGCCAAGTTTTCTGACGA+AGG - chr4.2:30314069-30314088 None:intergenic 45.0%
! GACGTTTTTGTGTTCCGGAT+CGG - chr4.2:30314438-30314457 None:intergenic 45.0%
! TCGGTTTTTGCACTGAACGT+CGG - chr4.2:30314149-30314168 None:intergenic 45.0%
! TCTCATCGGCGATACTTTTC+CGG + chr4.2:30314270-30314289 MS.gene045493:CDS 45.0%
! TTTTCTGACGAAGGTTACCG+CGG - chr4.2:30314060-30314079 None:intergenic 45.0%
!! AAAGAGACGAAGCATCGTTC+CGG + chr4.2:30314470-30314489 MS.gene045493:CDS 45.0%
!! ACTAAACGTGCTTCTGGTTC+CGG + chr4.2:30314793-30314812 MS.gene045493:CDS 45.0%
AAGACGAGTGAAAAACGGCC+AGG - chr4.2:30314245-30314264 None:intergenic 50.0%
ACGTCGCGCTTTCTTGTTAC+CGG - chr4.2:30314125-30314144 None:intergenic 50.0%
AGACGAGTGAAAAACGGCCA+GGG - chr4.2:30314244-30314263 None:intergenic 50.0%
ATCGTTCCGGCGGAATTTCT+CGG + chr4.2:30314483-30314502 MS.gene045493:CDS 50.0%
GATGGGACCCATAAGGAGTT+TGG + chr4.2:30314589-30314608 MS.gene045493:CDS 50.0%
GCAGAGGATGCAGTTTGTGA+AGG + chr4.2:30314705-30314724 MS.gene045493:CDS 50.0%
GGAGTAGACCGTACATTCAC+CGG - chr4.2:30314313-30314332 None:intergenic 50.0%
GGATGAGAGATTATCCACGC+CGG - chr4.2:30314406-30314425 None:intergenic 50.0%
GGCGTGGATAATCTCTCATC+CGG + chr4.2:30314405-30314424 MS.gene045493:CDS 50.0%
TGGTGGAATTGGAGAAGCAG+AGG + chr4.2:30314689-30314708 MS.gene045493:CDS 50.0%
TGTGGAGTCAGAGGAATGGA+GGG + chr4.2:30314546-30314565 MS.gene045493:CDS 50.0%
! CGTTTTTGTGTTCCGGATCG+GGG - chr4.2:30314436-30314455 None:intergenic 50.0%
! TCGTCTCTTTTCGCCATTGC+CGG - chr4.2:30314460-30314479 None:intergenic 50.0%
! TGCCGGACGTTTTTGTGTTC+CGG - chr4.2:30314443-30314462 None:intergenic 50.0%
!! GGAACGGAGTTGATAGGTGA+CGG - chr4.2:30313929-30313948 None:intergenic 50.0%
AGGAGGTGGACGTTTGACGA+CGG - chr4.2:30314338-30314357 None:intergenic 55.0%
GACGAAGGTTACCGCGGTTA+AGG - chr4.2:30314054-30314073 None:intergenic 55.0%
GAGGAATGGAGGGGGAAGAA+AGG + chr4.2:30314556-30314575 MS.gene045493:CDS 55.0%
GAGGGTGGAAGTTGCGTCTT+CGG - chr4.2:30314002-30314021 None:intergenic 55.0%
GCTAGGGTTTCCGAATCCGA+CGG + chr4.2:30314205-30314224 MS.gene045493:CDS 55.0%
GGTCAAAAAACTCTCCCCGC+CGG + chr4.2:30314291-30314310 MS.gene045493:CDS 55.0%
GTAGACCGTACATTCACCGG+CGG - chr4.2:30314310-30314329 None:intergenic 55.0%
GTGGAGTCAGAGGAATGGAG+GGG + chr4.2:30314547-30314566 MS.gene045493:CDS 55.0%
GTGTGGAGTCAGAGGAATGG+AGG + chr4.2:30314545-30314564 MS.gene045493:CDS 55.0%
TAGACCGTACATTCACCGGC+GGG - chr4.2:30314309-30314328 None:intergenic 55.0%
TCGCGCTTTCTTGTTACCGG+CGG - chr4.2:30314122-30314141 None:intergenic 55.0%
TGAAAAACGGCCAGGGACTC+TGG - chr4.2:30314237-30314256 None:intergenic 55.0%
TGAGAGATTATCCACGCCGG+AGG - chr4.2:30314403-30314422 None:intergenic 55.0%
TGGAGTCAGAGGAATGGAGG+GGG + chr4.2:30314548-30314567 MS.gene045493:CDS 55.0%
TGGTTTCAGAGAGCTCGCTC+AGG + chr4.2:30314609-30314628 MS.gene045493:CDS 55.0%
! GGCAGAAAGTGTGGAGTCAG+AGG + chr4.2:30314537-30314556 MS.gene045493:CDS 55.0%
!! GTTGATAGGTGACGGAGCTC+CGG - chr4.2:30313921-30313940 None:intergenic 55.0%
!!! GGCGGGGAGAGTTTTTTGAC+CGG - chr4.2:30314292-30314311 None:intergenic 55.0%
AGACCGTACATTCACCGGCG+GGG - chr4.2:30314308-30314327 None:intergenic 60.0%
AGGGTTTCCGAATCCGACGG+CGG + chr4.2:30314208-30314227 MS.gene045493:CDS 60.0%
ATTATCCACGCCGGAGGCGA+CGG - chr4.2:30314397-30314416 None:intergenic 60.0%
CGAACGCCGAGAAATTCCGC+CGG - chr4.2:30314492-30314511 None:intergenic 60.0%
CGCTACCTCGACCTTAACCG+CGG + chr4.2:30314040-30314059 MS.gene045493:CDS 60.0%
CTGGTAACCGCCGTCGGATT+CGG - chr4.2:30314218-30314237 None:intergenic 60.0%
CTTCGGTCCAGCAGTCTTCG+CGG - chr4.2:30313985-30314004 None:intergenic 60.0%
CTTTCTTGTTACCGGCGGCG+TGG - chr4.2:30314117-30314136 None:intergenic 60.0%
GAATTTCTCGGCGTTCGCGG+CGG + chr4.2:30314495-30314514 MS.gene045493:CDS 60.0%
GACGGTGGAGAAGGTGGAGA+CGG - chr4.2:30314370-30314389 None:intergenic 60.0%
GACGGTGGAGATTGAGGAGG+TGG - chr4.2:30314352-30314371 None:intergenic 60.0%
GCGGAATTTCTCGGCGTTCG+CGG + chr4.2:30314492-30314511 MS.gene045493:CDS 60.0%
GGAGACGGTGGAGATTGAGG+AGG - chr4.2:30314355-30314374 None:intergenic 60.0%
GGTGGACGTTTGACGACGGT+TGG - chr4.2:30314334-30314353 None:intergenic 60.0%
GGTGGAGACGGTGGAGATTG+AGG - chr4.2:30314358-30314377 None:intergenic 60.0%
GGTTACCGCGGTTAAGGTCG+AGG - chr4.2:30314048-30314067 None:intergenic 60.0%
TCTCCCCGCCGGTGAATGTA+CGG + chr4.2:30314302-30314321 MS.gene045493:CDS 60.0%
TTCCACCCTCATCGACGCCT+GGG + chr4.2:30314012-30314031 MS.gene045493:CDS 60.0%
!! GAGACGAAGCATCGTTCCGG+CGG + chr4.2:30314473-30314492 MS.gene045493:CDS 60.0%
!! TTCACCCCAGGCGTCGATGA+GGG - chr4.2:30314020-30314039 None:intergenic 60.0%
ACGGCGGTTACCAGAGTCCC+TGG + chr4.2:30314224-30314243 MS.gene045493:CDS 65.0%
ACGGGGAACGGCGATGACGA+CGG - chr4.2:30313962-30313981 None:intergenic 65.0%
CAGTCTTCGCGGACGGGGAA+CGG - chr4.2:30313974-30313993 None:intergenic 65.0%
CTTCCACCCTCATCGACGCC+TGG + chr4.2:30314011-30314030 MS.gene045493:CDS 65.0%
GACGGTGGAGACGGTGGAGA+AGG - chr4.2:30314379-30314398 None:intergenic 65.0%
GATGACGACGGAAGACGCGG+CGG - chr4.2:30313950-30313969 None:intergenic 65.0%
GGCGATGACGACGGAAGACG+CGG - chr4.2:30313953-30313972 None:intergenic 65.0%
GGCGGCTGAGGCAGAAAGTG+TGG + chr4.2:30314528-30314547 MS.gene045493:CDS 65.0%
GGGACTCTGGTAACCGCCGT+CGG - chr4.2:30314224-30314243 None:intergenic 65.0%
GGTCCAGCAGTCTTCGCGGA+CGG - chr4.2:30313981-30314000 None:intergenic 65.0%
GGTGGAGAAGGTGGAGACGG+TGG - chr4.2:30314367-30314386 None:intergenic 65.0%
GGTGGAGACGGTGGAGAAGG+TGG - chr4.2:30314376-30314395 None:intergenic 65.0%
GTCCAGCAGTCTTCGCGGAC+GGG - chr4.2:30313980-30313999 None:intergenic 65.0%
GTCGAGGTAGCGTTCACCCC+AGG - chr4.2:30314032-30314051 None:intergenic 65.0%
GTGGACGTCGTTGACGGCGT+CGG - chr4.2:30314098-30314117 None:intergenic 65.0%
TCCACCCTCATCGACGCCTG+GGG + chr4.2:30314013-30314032 MS.gene045493:CDS 65.0%
TCCAGCAGTCTTCGCGGACG+GGG - chr4.2:30313979-30313998 None:intergenic 65.0%
! CGCGGCGGAACGGAGTTGAT+AGG - chr4.2:30313935-30313954 None:intergenic 65.0%
!! GTTCACCCCAGGCGTCGATG+AGG - chr4.2:30314021-30314040 None:intergenic 65.0%
ACCGTCTCCACCGTCGCCTC+CGG + chr4.2:30314384-30314403 MS.gene045493:CDS 70.0%
CATCCGGTCGGTCCCCGATC+CGG + chr4.2:30314421-30314440 MS.gene045493:CDS 70.0%
CGACGGAAGACGCGGCGGAA+CGG - chr4.2:30313945-30313964 None:intergenic 70.0%
GGCGGCGTGGACGTCGTTGA+CGG - chr4.2:30314104-30314123 None:intergenic 70.0%
GTCAACGACGTCCACGCCGC+CGG + chr4.2:30314103-30314122 MS.gene045493:CDS 70.0%
GTTCCGGATCGGGGACCGAC+CGG - chr4.2:30314427-30314446 None:intergenic 70.0%
TCCCCGTCCGCGAAGACTGC+TGG + chr4.2:30313975-30313994 MS.gene045493:CDS 70.0%
!! ACCCCAGGCGTCGATGAGGG+TGG - chr4.2:30314017-30314036 None:intergenic 70.0%
ATCCACGCCGGAGGCGACGG+TGG - chr4.2:30314394-30314413 None:intergenic 75.0%
GCCGGAGGCGACGGTGGAGA+CGG - chr4.2:30314388-30314407 None:intergenic 75.0%
GGAGGCGACGGTGGAGACGG+TGG - chr4.2:30314385-30314404 None:intergenic 75.0%
GTTCGCGGCGGCTGCTGCAG+CGG + chr4.2:30314507-30314526 MS.gene045493:CDS 75.0%
! CTCCACCGTCGCCTCCGGCG+TGG + chr4.2:30314389-30314408 MS.gene045493:CDS 80.0%
! GGCTGCTGCAGCGGCGGCTG+AGG + chr4.2:30314516-30314535 MS.gene045493:CDS 80.0%
! CGCGGCGGCTGCTGCAGCGG+CGG + chr4.2:30314510-30314529 MS.gene045493:CDS 85.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 30313905 30314855 30313905 ID=MS.gene045493
chr4.2 mRNA 30313905 30314855 30313905 ID=MS.gene045493.t1;Parent=MS.gene045493
chr4.2 exon 30313905 30314855 30313905 ID=MS.gene045493.t1.exon1;Parent=MS.gene045493.t1
chr4.2 CDS 30313905 30314855 30313905 ID=cds.MS.gene045493.t1;Parent=MS.gene045493.t1
Gene Sequence

>MS.gene045493

ATGGACATCATCGCCGGAGCTCCGTCACCTATCAACTCCGTTCCGCCGCGTCTTCCGTCGTCATCGCCGTTCCCCGTCCGCGAAGACTGCTGGACCGAAGACGCAACTTCCACCCTCATCGACGCCTGGGGTGAACGCTACCTCGACCTTAACCGCGGTAACCTTCGTCAGAAAACTTGGCAAGAGGTTGCCGACGCCGTCAACGACGTCCACGCCGCCGGTAACAAGAAAGCGCGACGTACCGACGTTCAGTGCAAAAACCGAATCGACACGTTAAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGAATCCGACGGCGGTTACCAGAGTCCCTGGCCGTTTTTCACTCGTCTTGACGTTCTCATCGGCGATACTTTTCCGGTCAAAAAACTCTCCCCGCCGGTGAATGTACGGTCTACTCCAACCGTCGTCAAACGTCCACCTCCTCAATCTCCACCGTCTCCACCTTCTCCACCGTCTCCACCGTCGCCTCCGGCGTGGATAATCTCTCATCCGGTCGGTCCCCGATCCGGAACACAAAAACGTCCGGCAATGGCGAAAAGAGACGAAGCATCGTTCCGGCGGAATTTCTCGGCGTTCGCGGCGGCTGCTGCAGCGGCGGCTGAGGCAGAAAGTGTGGAGTCAGAGGAATGGAGGGGGAAGAAAGGAAGAGAAAACGATGGGACCCATAAGGAGTTTGGTTTCAGAGAGCTCGCTCAGGCTATAGAGAGATTCAGTGAAGTATATGAAAGAGTTGAAGCTTCAAAACAGAGACAAATGGTGGAATTGGAGAAGCAGAGGATGCAGTTTGTGAAGGATTTGGAGTATCAGAGAATGCAGTTATACATGGAAACGCAGGTTCAGCTTCAGAAAATCAAACGCACTAAACGTGCTTCTGGTTCCGGTGAGCTTAACCTGTTTCAAATTTATGATCATTGTATTTGA
Protein sequence

>MS.gene045493.t1

MDIIAGAPSPINSVPPRLPSSSPFPVREDCWTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDVHAAGNKKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPVKKLSPPVNVRSTPTVVKRPPPQSPPSPPSPPSPPSPPAWIISHPVGPRSGTQKRPAMAKRDEASFRRNFSAFAAAAAAAAEAESVESEEWRGKKGRENDGTHKEFGFRELAQAIERFSEVYERVEASKQRQMVELEKQRMQFVKDLEYQRMQLYMETQVQLQKIKRTKRASGSGELNLFQIYDHCI