Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045505.t1 | XP_003607570.1 | 95 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 4.20E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045505.t1 | Q9S7Y1 | 45.6 | 171 | 86 | 3 | 68 | 235 | 170 | 336 | 1.4e-30 | 134.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045505.t1 | G7JCJ8 | 95.0 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 3.1e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045505.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045505.t1 | MTR_4g079760 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 0.0 | 502 |
| MS.gene045505.t1 | MTR_2g091190 | 73.077 | 260 | 57 | 3 | 1 | 260 | 1 | 247 | 4.50e-114 | 328 |
| MS.gene045505.t1 | MTR_2g015890 | 48.837 | 215 | 105 | 3 | 25 | 238 | 19 | 229 | 6.11e-62 | 196 |
| MS.gene045505.t1 | MTR_2g015890 | 51.266 | 158 | 73 | 2 | 25 | 181 | 19 | 173 | 1.96e-46 | 154 |
| MS.gene045505.t1 | MTR_4g087920 | 40.964 | 249 | 138 | 6 | 6 | 248 | 10 | 255 | 1.16e-42 | 146 |
| MS.gene045505.t1 | MTR_2g015890 | 48.889 | 135 | 65 | 2 | 104 | 238 | 1 | 131 | 2.12e-35 | 124 |
| MS.gene045505.t1 | MTR_1g093750 | 41.667 | 192 | 101 | 2 | 68 | 255 | 154 | 338 | 3.08e-34 | 126 |
| MS.gene045505.t1 | MTR_3g070970 | 38.265 | 196 | 106 | 4 | 64 | 248 | 65 | 256 | 1.45e-33 | 122 |
| MS.gene045505.t1 | MTR_3g096568 | 71.053 | 76 | 22 | 0 | 140 | 215 | 236 | 311 | 3.44e-33 | 123 |
| MS.gene045505.t1 | MTR_5g066080 | 39.634 | 164 | 72 | 3 | 64 | 201 | 28 | 190 | 8.13e-21 | 89.0 |
| MS.gene045505.t1 | MTR_5g032375 | 34.356 | 163 | 90 | 3 | 60 | 209 | 33 | 191 | 2.43e-20 | 86.7 |
| MS.gene045505.t1 | MTR_2g015890 | 53.846 | 78 | 33 | 1 | 104 | 181 | 1 | 75 | 6.82e-20 | 82.8 |
| MS.gene045505.t1 | MTR_8g032210 | 80.357 | 56 | 9 | 2 | 42 | 97 | 41 | 94 | 6.49e-19 | 80.1 |
| MS.gene045505.t1 | MTR_1g018820 | 76.316 | 38 | 9 | 0 | 103 | 140 | 58 | 95 | 1.39e-12 | 62.8 |
| MS.gene045505.t1 | MTR_5g014520 | 27.568 | 185 | 93 | 6 | 47 | 201 | 133 | 306 | 1.17e-11 | 64.3 |
| MS.gene045505.t1 | MTR_8g064700 | 28.814 | 177 | 90 | 5 | 79 | 225 | 248 | 418 | 5.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045505.t1 | AT1G68810 | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 4.87e-33 | 124 |
| MS.gene045505.t1 | AT3G56770 | 39.535 | 172 | 95 | 4 | 67 | 236 | 40 | 204 | 1.80e-28 | 108 |
| MS.gene045505.t1 | AT3G25710 | 41.830 | 153 | 88 | 1 | 68 | 220 | 128 | 279 | 7.05e-28 | 109 |
| MS.gene045505.t1 | AT2G40200 | 35.294 | 187 | 111 | 4 | 74 | 253 | 65 | 248 | 3.09e-26 | 103 |
| MS.gene045505.t1 | AT2G41130 | 36.199 | 221 | 126 | 5 | 25 | 236 | 13 | 227 | 3.78e-25 | 100 |
| MS.gene045505.t1 | AT4G38070 | 34.752 | 141 | 85 | 2 | 61 | 201 | 81 | 214 | 3.75e-17 | 79.0 |
| MS.gene045505.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
| MS.gene045505.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
Find 41 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTTTCTCTTTGGTTT+TGG | 0.189232 | 4.2:+30427974 | MS.gene045505:CDS |
| GATTGGGGTTATGATATATT+TGG | 0.190751 | 4.2:+30427882 | MS.gene045505:CDS |
| GACATTTGAAAGAGCTAAAA+AGG | 0.203088 | 4.2:+30429433 | MS.gene045505:CDS |
| AAAGCAGATATTGCAACTTT+TGG | 0.234706 | 4.2:+30429642 | MS.gene045505:CDS |
| AGTGATGCTTTAATTGAAAA+AGG | 0.247436 | 4.2:-30429546 | None:intergenic |
| TTATGGTTCAACTTTCTCTT+TGG | 0.279286 | 4.2:+30427968 | MS.gene045505:CDS |
| GAAGTAAACAATGAGGTAAT+TGG | 0.285315 | 4.2:+30427939 | MS.gene045505:CDS |
| TGTAGAGGCACCTGTTAAAA+TGG | 0.303301 | 4.2:+30428016 | MS.gene045505:CDS |
| GAATACAGACAGTTTCTTGC+TGG | 0.381216 | 4.2:+30429726 | MS.gene045505:CDS |
| GAGGTAATTGGAAGTGGTTA+TGG | 0.384357 | 4.2:+30427951 | MS.gene045505:CDS |
| CTTATTTCATCATTGTCCTT+TGG | 0.388296 | 4.2:-30429489 | None:intergenic |
| TGTCATTCCAGGTGCTTTGA+AGG | 0.393290 | 4.2:+30428151 | MS.gene045505:CDS |
| GGAGATGCTACTGAGAGAAT+TGG | 0.414764 | 4.2:+30427903 | MS.gene045505:CDS |
| GGAAATGGAAGGTTATGATT+GGG | 0.418530 | 4.2:+30427866 | MS.gene045505:CDS |
| ACACTTCGTTGTGTCATTCC+AGG | 0.420229 | 4.2:+30428140 | MS.gene045505:CDS |
| TGGAAATGGAAGGTTATGAT+TGG | 0.437370 | 4.2:+30427865 | MS.gene045505:CDS |
| GAACAAGAGGGAGGTTGGAA+TGG | 0.468944 | 4.2:+30429519 | MS.gene045505:CDS |
| CAAGCTCTTAAGTCTGTACT+TGG | 0.491840 | 4.2:+30429759 | MS.gene045505:CDS |
| AACAATGAGGTAATTGGAAG+TGG | 0.504571 | 4.2:+30427945 | MS.gene045505:CDS |
| ACCTGTTAAAATGGAAGGAA+AGG | 0.510809 | 4.2:+30428025 | MS.gene045505:CDS |
| TTGAAGAACAAGAGGGAGGT+TGG | 0.512376 | 4.2:+30429514 | MS.gene045505:CDS |
| AATAAGCGTTGAAGAACAAG+AGG | 0.524950 | 4.2:+30429506 | MS.gene045505:CDS |
| CTTATATTAGACAATAAACC+TGG | 0.525756 | 4.2:-30429585 | None:intergenic |
| GAGGCACCTGTTAAAATGGA+AGG | 0.536082 | 4.2:+30428020 | MS.gene045505:CDS |
| CTATGTTGTGAATATCAACC+AGG | 0.546737 | 4.2:+30429567 | MS.gene045505:CDS |
| GAAATGGAAGGTTATGATTG+GGG | 0.551297 | 4.2:+30427867 | MS.gene045505:CDS |
| ATGGACAAAGCATCATTACT+TGG | 0.558251 | 4.2:+30429399 | MS.gene045505:CDS |
| CAGAGAGGAGGAGAAGAGCT+AGG | 0.569549 | 4.2:+30428099 | MS.gene045505:CDS |
| CAAAGCATCATTACTTGGTG+AGG | 0.575226 | 4.2:+30429404 | MS.gene045505:CDS |
| CAAGTACAGACTTAAGAGCT+TGG | 0.585666 | 4.2:-30429758 | None:intergenic |
| ATCATAGTGAGGCAGAGAGG+AGG | 0.598403 | 4.2:+30428087 | MS.gene045505:CDS |
| CCTGTTAAAATGGAAGGAAA+GGG | 0.600881 | 4.2:+30428026 | MS.gene045505:CDS |
| GAACTAACCTTCAAAGCACC+TGG | 0.603639 | 4.2:-30428158 | None:intergenic |
| GGAGAGAGGGGAGCTTGTAG+AGG | 0.606852 | 4.2:+30428001 | MS.gene045505:CDS |
| TACTTGGCTATGGAAATGGA+AGG | 0.619525 | 4.2:+30427855 | None:intergenic |
| TGAAGGTTTAATGATACCAA+AGG | 0.625000 | 4.2:+30429473 | MS.gene045505:CDS |
| AATGAAGCACAAGCATGTGA+AGG | 0.642340 | 4.2:+30429456 | MS.gene045505:CDS |
| AGAATCATAGTGAGGCAGAG+AGG | 0.654591 | 4.2:+30428084 | MS.gene045505:CDS |
| AGCTTTGAAGAATCATAGTG+AGG | 0.662555 | 4.2:+30428076 | MS.gene045505:CDS |
| AGCGTTGAAGAACAAGAGGG+AGG | 0.722418 | 4.2:+30429510 | MS.gene045505:CDS |
| ATAAGCGTTGAAGAACAAGA+GGG | 0.752312 | 4.2:+30429507 | MS.gene045505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTATAATTCCTTAAAAA+TGG | + | chr4.2:30429089-30429108 | MS.gene045505:intron | 15.0% |
| !! | TTCTTAATAACCAATTATAT+TGG | + | chr4.2:30428303-30428322 | MS.gene045505:intron | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | + | chr4.2:30429051-30429070 | MS.gene045505:intron | 15.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | - | chr4.2:30428876-30428895 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | - | chr4.2:30428254-30428273 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | - | chr4.2:30429045-30429064 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | - | chr4.2:30428623-30428642 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | - | chr4.2:30429103-30429122 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | - | chr4.2:30428554-30428573 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | - | chr4.2:30429033-30429052 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | + | chr4.2:30428769-30428788 | MS.gene045505:intron | 20.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | - | chr4.2:30428205-30428224 | None:intergenic | 20.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | - | chr4.2:30429549-30429568 | None:intergenic | 25.0% |
| ! | ATACTTCACACCAATATAAT+TGG | - | chr4.2:30428316-30428335 | None:intergenic | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | + | chr4.2:30429135-30429154 | MS.gene045505:intron | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | - | chr4.2:30429588-30429607 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | + | chr4.2:30428476-30428495 | MS.gene045505:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | - | chr4.2:30428684-30428703 | None:intergenic | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | + | chr4.2:30429134-30429153 | MS.gene045505:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | + | chr4.2:30429004-30429023 | MS.gene045505:intron | 25.0% |
| ! | TTAAGTTTAGCATATAGATG+TGG | - | chr4.2:30429225-30429244 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | + | chr4.2:30428768-30428787 | MS.gene045505:intron | 25.0% |
| AAACTTCAAATGGTGTAACA+TGG | + | chr4.2:30428754-30428773 | MS.gene045505:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | + | chr4.2:30428817-30428836 | MS.gene045505:intron | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | + | chr4.2:30427912-30427931 | MS.gene045505:CDS | 30.0% | |
| AGCTAGTTATTTGGTTGATT+AGG | + | chr4.2:30428704-30428723 | MS.gene045505:intron | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | + | chr4.2:30428744-30428763 | MS.gene045505:intron | 30.0% | |
| AGTCACAGTTTGATGTATTT+GGG | + | chr4.2:30428818-30428837 | MS.gene045505:intron | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | - | chr4.2:30428926-30428945 | None:intergenic | 30.0% | |
| ATATTTGTGAAACTGTTTGG+TGG | - | chr4.2:30428620-30428639 | None:intergenic | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | - | chr4.2:30428870-30428889 | None:intergenic | 30.0% | |
| CTGGTAAATGATCATATGTA+AGG | + | chr4.2:30429003-30429022 | MS.gene045505:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | - | chr4.2:30429492-30429511 | None:intergenic | 30.0% | |
| GAAGTAAACAATGAGGTAAT+TGG | + | chr4.2:30427939-30427958 | MS.gene045505:CDS | 30.0% | |
| GACATTTGAAAGAGCTAAAA+AGG | + | chr4.2:30429433-30429452 | MS.gene045505:CDS | 30.0% | |
| GATTGGGGTTATGATATATT+TGG | + | chr4.2:30427882-30427901 | MS.gene045505:CDS | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | + | chr4.2:30428705-30428724 | MS.gene045505:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | + | chr4.2:30429005-30429024 | MS.gene045505:intron | 30.0% | |
| GTTGAAAAGATATATACGAG+AGG | - | chr4.2:30429268-30429287 | None:intergenic | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | + | chr4.2:30429136-30429155 | MS.gene045505:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | + | chr4.2:30429473-30429492 | MS.gene045505:CDS | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | + | chr4.2:30427968-30427987 | MS.gene045505:CDS | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | - | chr4.2:30428933-30428952 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | + | chr4.2:30429642-30429661 | MS.gene045505:CDS | 30.0% |
| ! | ATCAACCAAATAACTAGCTT+AGG | - | chr4.2:30428703-30428722 | None:intergenic | 30.0% |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | + | chr4.2:30428937-30428956 | MS.gene045505:intron | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | - | chr4.2:30428238-30428257 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | - | chr4.2:30428367-30428386 | None:intergenic | 30.0% |
| ! | TTTCCTTTTTATGACACAGA+TGG | + | chr4.2:30429380-30429399 | MS.gene045505:intron | 30.0% |
| !! | TCATAGTGGATATTAGTCAT+CGG | - | chr4.2:30428353-30428372 | None:intergenic | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | + | chr4.2:30428938-30428957 | MS.gene045505:intron | 30.0% |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | + | chr4.2:30427974-30427993 | MS.gene045505:CDS | 30.0% |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | + | chr4.2:30427932-30427951 | MS.gene045505:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | + | chr4.2:30427980-30427999 | MS.gene045505:CDS | 30.0% |
| AAAGCCATTAACTCCATGTT+TGG | + | chr4.2:30428222-30428241 | MS.gene045505:intron | 35.0% | |
| AACAATGAGGTAATTGGAAG+TGG | + | chr4.2:30427945-30427964 | MS.gene045505:CDS | 35.0% | |
| ACCTGTTAAAATGGAAGGAA+AGG | + | chr4.2:30428025-30428044 | MS.gene045505:CDS | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | + | chr4.2:30429179-30429198 | MS.gene045505:intron | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | + | chr4.2:30428443-30428462 | MS.gene045505:intron | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | + | chr4.2:30428374-30428393 | MS.gene045505:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | - | chr4.2:30428448-30428467 | None:intergenic | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+GGG | + | chr4.2:30428026-30428045 | MS.gene045505:CDS | 35.0% | |
| CTATCCAAACATGGAGTTAA+TGG | - | chr4.2:30428229-30428248 | None:intergenic | 35.0% | |
| CTATGTTGTGAATATCAACC+AGG | + | chr4.2:30429567-30429586 | MS.gene045505:CDS | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | - | chr4.2:30429193-30429212 | None:intergenic | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | + | chr4.2:30427867-30427886 | MS.gene045505:CDS | 35.0% | |
| GACAACCTAAGCTAGTTATT+TGG | + | chr4.2:30428695-30428714 | MS.gene045505:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | + | chr4.2:30428720-30428739 | MS.gene045505:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | - | chr4.2:30428405-30428424 | None:intergenic | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | + | chr4.2:30427866-30427885 | MS.gene045505:CDS | 35.0% | |
| GGAGTATAAACCATACTAGT+TGG | + | chr4.2:30428974-30428993 | MS.gene045505:intron | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | - | chr4.2:30428406-30428425 | None:intergenic | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | + | chr4.2:30429808-30429827 | MS.gene045505:CDS | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | - | chr4.2:30429140-30429159 | None:intergenic | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | + | chr4.2:30428375-30428394 | MS.gene045505:intron | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | - | chr4.2:30428410-30428429 | None:intergenic | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | + | chr4.2:30428719-30428738 | MS.gene045505:intron | 35.0% | |
| TGCTAAGAGCAAGAAAAAGA+AGG | + | chr4.2:30429805-30429824 | MS.gene045505:CDS | 35.0% | |
| TGGAAATGGAAGGTTATGAT+TGG | + | chr4.2:30427865-30427884 | MS.gene045505:CDS | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | - | chr4.2:30429386-30429405 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | - | chr4.2:30428611-30428630 | None:intergenic | 35.0% |
| ! | ATGGACAAAGCATCATTACT+TGG | + | chr4.2:30429399-30429418 | MS.gene045505:CDS | 35.0% |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | + | chr4.2:30429779-30429798 | MS.gene045505:CDS | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | + | chr4.2:30429506-30429525 | MS.gene045505:CDS | 35.0% |
| !! | AGCTTTGAAGAATCATAGTG+AGG | + | chr4.2:30428076-30428095 | MS.gene045505:CDS | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | + | chr4.2:30429507-30429526 | MS.gene045505:CDS | 35.0% |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | + | chr4.2:30427979-30427998 | MS.gene045505:CDS | 35.0% |
| AATGAAGCACAAGCATGTGA+AGG | + | chr4.2:30429456-30429475 | MS.gene045505:CDS | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | + | chr4.2:30429759-30429778 | MS.gene045505:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | - | chr4.2:30429761-30429780 | None:intergenic | 40.0% | |
| CCAGTTACTACCAACTAGTA+TGG | - | chr4.2:30428987-30429006 | None:intergenic | 40.0% | |
| CGGGAAAAACTTTGATTAGG+AGG | - | chr4.2:30428407-30428426 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | - | chr4.2:30428800-30428819 | None:intergenic | 40.0% | |
| GAATACAGACAGTTTCTTGC+TGG | + | chr4.2:30429726-30429745 | MS.gene045505:CDS | 40.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | + | chr4.2:30427951-30427970 | MS.gene045505:CDS | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | - | chr4.2:30428426-30428445 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | - | chr4.2:30428427-30428446 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | + | chr4.2:30428953-30428972 | MS.gene045505:intron | 40.0% | |
| TAGTTATGTATTGGGGAGTC+CGG | + | chr4.2:30429143-30429162 | MS.gene045505:intron | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | + | chr4.2:30428420-30428439 | MS.gene045505:intron | 40.0% | |
| ! | CAAAGCATCATTACTTGGTG+AGG | + | chr4.2:30429404-30429423 | MS.gene045505:CDS | 40.0% |
| ! | GCAGATATTGCAACTTTTGG+AGG | + | chr4.2:30429645-30429664 | MS.gene045505:CDS | 40.0% |
| !! | CCATACTAGTTGGTAGTAAC+TGG | + | chr4.2:30428984-30429003 | MS.gene045505:intron | 40.0% |
| !! | CCCTTTCCTTCCATTTTAAC+AGG | - | chr4.2:30428029-30428048 | None:intergenic | 40.0% |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | - | chr4.2:30429206-30429225 | None:intergenic | 40.0% |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | + | chr4.2:30428016-30428035 | MS.gene045505:CDS | 40.0% |
| AGAATCATAGTGAGGCAGAG+AGG | + | chr4.2:30428084-30428103 | MS.gene045505:CDS | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | + | chr4.2:30428724-30428743 | MS.gene045505:intron | 45.0% | |
| AGTTATGTATTGGGGAGTCC+GGG | + | chr4.2:30429144-30429163 | MS.gene045505:intron | 45.0% | |
| ATTAGTCATCGGCAACAACG+CGG | - | chr4.2:30428342-30428361 | None:intergenic | 45.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | + | chr4.2:30427903-30427922 | MS.gene045505:CDS | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | - | chr4.2:30429165-30429184 | None:intergenic | 45.0% | |
| TGTCATTCCAGGTGCTTTGA+AGG | + | chr4.2:30428151-30428170 | MS.gene045505:CDS | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | + | chr4.2:30429514-30429533 | MS.gene045505:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | + | chr4.2:30428140-30428159 | MS.gene045505:CDS | 45.0% |
| ! | GAACTAACCTTCAAAGCACC+TGG | - | chr4.2:30428161-30428180 | None:intergenic | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | + | chr4.2:30428020-30428039 | MS.gene045505:CDS | 45.0% |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | - | chr4.2:30428858-30428877 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | + | chr4.2:30427988-30428007 | MS.gene045505:CDS | 45.0% |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | + | chr4.2:30427987-30428006 | MS.gene045505:CDS | 45.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | + | chr4.2:30428087-30428106 | MS.gene045505:CDS | 50.0% | |
| GAACAAGAGGGAGGTTGGAA+TGG | + | chr4.2:30429519-30429538 | MS.gene045505:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | - | chr4.2:30428849-30428868 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | + | chr4.2:30429510-30429529 | MS.gene045505:CDS | 50.0% |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | + | chr4.2:30427989-30428008 | MS.gene045505:CDS | 50.0% |
| CAGAGAGGAGGAGAAGAGCT+AGG | + | chr4.2:30428099-30428118 | MS.gene045505:CDS | 55.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | - | chr4.2:30428390-30428409 | None:intergenic | 60.0% | |
| AGTCATCGGCAACAACGCGG+TGG | - | chr4.2:30428339-30428358 | None:intergenic | 60.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | + | chr4.2:30428001-30428020 | MS.gene045505:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 30427864 | 30429872 | 30427864 | ID=MS.gene045505 |
| chr4.2 | mRNA | 30427864 | 30429872 | 30427864 | ID=MS.gene045505.t1;Parent=MS.gene045505 |
| chr4.2 | exon | 30427864 | 30428172 | 30427864 | ID=MS.gene045505.t1.exon1;Parent=MS.gene045505.t1 |
| chr4.2 | CDS | 30427864 | 30428172 | 30427864 | ID=cds.MS.gene045505.t1;Parent=MS.gene045505.t1 |
| chr4.2 | exon | 30429399 | 30429872 | 30429399 | ID=MS.gene045505.t1.exon2;Parent=MS.gene045505.t1 |
| chr4.2 | CDS | 30429399 | 30429872 | 30429399 | ID=cds.MS.gene045505.t1;Parent=MS.gene045505.t1 |
| Gene Sequence |
| Protein sequence |
