AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045518

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045518.t1 MTR_4g079500 98.366 306 2 1 1 306 26 328 0.0 615
MS.gene045518.t1 MTR_2g090900 63.810 315 80 13 6 306 29 323 8.22e-107 314
MS.gene045518.t1 MTR_2g090900 63.323 319 81 14 1 305 26 322 6.61e-106 312
MS.gene045518.t1 MTR_2g078370 43.860 171 74 10 18 178 56 214 1.23e-23 96.7
MS.gene045518.t1 MTR_8g088650 52.941 102 43 1 166 267 228 324 1.90e-23 99.4
MS.gene045518.t1 MTR_2g078360 60.000 75 20 2 226 291 1 74 2.61e-22 89.4
MS.gene045518.t1 MTR_5g075390 48.387 93 48 0 172 264 159 251 5.45e-20 89.4
MS.gene045518.t1 MTR_4g072090 37.589 141 65 2 149 266 314 454 5.98e-20 90.1
MS.gene045518.t1 MTR_2g099050 46.000 100 54 0 170 269 219 318 2.22e-19 88.2
MS.gene045518.t1 MTR_3g005230 49.425 87 44 0 181 267 136 222 3.61e-19 85.5
MS.gene045518.t1 MTR_6g034945 34.286 175 102 2 111 285 96 257 5.25e-19 85.9
MS.gene045518.t1 MTR_3g467120 45.161 93 51 0 172 264 177 269 3.64e-18 84.3
MS.gene045518.t1 MTR_3g094020 44.681 94 52 0 171 264 107 200 4.67e-17 80.5
MS.gene045518.t1 MTR_4g072090 35.714 126 58 2 149 251 314 439 2.83e-15 76.3
MS.gene045518.t1 MTR_1g023690 48.980 98 46 2 171 266 386 481 5.94e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045518.t1 AT3G58120 56.592 311 90 10 19 306 41 329 1.33e-94 283
MS.gene045518.t1 AT2G42380 54.485 301 101 8 20 306 42 320 2.90e-90 272
MS.gene045518.t1 AT2G42380 50.498 301 102 9 20 306 42 309 5.75e-79 243
MS.gene045518.t1 AT3G58120 58.167 251 77 7 19 251 41 281 6.21e-78 239
MS.gene045518.t1 AT2G42380 55.417 240 83 5 20 251 42 265 1.03e-72 225
MS.gene045518.t1 AT2G42380 47.264 201 82 5 20 212 42 226 8.16e-43 147
MS.gene045518.t1 AT2G42380 47.264 201 82 5 20 212 42 226 8.16e-43 147
MS.gene045518.t1 AT1G58110 47.321 112 53 2 156 267 219 324 4.11e-22 95.5
MS.gene045518.t1 AT1G58110 47.321 112 53 2 156 267 219 324 4.11e-22 95.5
MS.gene045518.t1 AT1G43700 49.485 97 49 0 170 266 192 288 1.23e-20 90.9
MS.gene045518.t1 AT4G38900 47.368 95 50 0 170 264 392 486 7.87e-20 90.1
MS.gene045518.t1 AT4G38900 47.368 95 50 0 170 264 392 486 7.87e-20 90.1
MS.gene045518.t1 AT2G40620 45.263 95 52 0 170 264 146 240 4.71e-19 86.7
MS.gene045518.t1 AT1G06070 44.000 100 56 0 170 269 208 307 1.01e-18 86.3
MS.gene045518.t1 AT2G21230 45.361 97 53 0 170 266 368 464 1.96e-18 85.9
MS.gene045518.t1 AT2G21230 45.361 97 53 0 170 266 368 464 1.96e-18 85.9
MS.gene045518.t1 AT1G06850 47.312 93 49 0 172 264 148 240 2.71e-18 84.3
MS.gene045518.t1 AT2G31370 42.991 107 61 0 163 269 192 298 3.85e-18 84.3
MS.gene045518.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene045518.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene045518.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene045518.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene045518.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene045518.t1 AT2G31370 42.991 107 61 0 163 269 192 298 6.41e-18 84.0
MS.gene045518.t1 AT4G38900 44.554 101 50 1 170 264 392 492 1.40e-17 83.6
MS.gene045518.t1 AT5G04840 50.000 84 42 0 181 264 177 260 2.90e-17 80.9
MS.gene045518.t1 AT1G35490 41.509 106 56 2 160 264 158 258 7.48e-17 79.7
MS.gene045518.t1 AT1G35490 41.509 106 56 2 160 264 158 258 7.48e-17 79.7
MS.gene045518.t1 AT2G21230 41.748 103 54 1 170 266 368 470 4.62e-16 79.0
MS.gene045518.t1 AT2G21230 45.122 82 45 0 170 251 368 449 1.78e-14 73.9
MS.gene045518.t1 AT5G04840 51.389 72 35 0 181 252 177 248 8.30e-14 70.5
MS.gene045518.t1 AT5G07160 41.489 94 55 0 171 264 47 140 4.56e-12 63.5
MS.gene045518.t1 AT1G06850 70.455 44 13 0 172 215 148 191 4.05e-11 62.4
MS.gene045518.t1 AT2G12900 34.021 97 64 0 170 266 114 210 8.25e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACCACGGGTTGCATATT+TGG 0.213119 4.2:-30694258 MS.gene045518:CDS
ACGTCTGTGTGCCCCTCTTC+TGG 0.291136 4.2:+30695295 None:intergenic
TCATTATCACATCGTGGTTT+AGG 0.296604 4.2:+30693389 None:intergenic
GGTGAATGCAAACAGGAAAA+TGG 0.353861 4.2:-30694972 MS.gene045518:CDS
GAATCTGATGAGGATGAAAT+TGG 0.366529 4.2:-30694993 MS.gene045518:CDS
ACGAAGTGTGACTTCATTAC+AGG 0.377047 4.2:-30694448 MS.gene045518:intron
ACAATCAACAAAACCCTTCA+TGG 0.391610 4.2:-30695346 MS.gene045518:CDS
AATGATGAAGATGACAATAA+TGG 0.401593 4.2:-30694939 MS.gene045518:CDS
GAAAAGTTTGAAGCATTACT+TGG 0.449386 4.2:+30695371 None:intergenic
TGAAATTGGTGAATGCAAAC+AGG 0.473536 4.2:-30694979 MS.gene045518:CDS
AAGAGGGGCACACAGACGTT+CGG 0.489835 4.2:-30695291 MS.gene045518:CDS
GTAGCTGATGGTGCTGGTGG+TGG 0.496771 4.2:+30695122 None:intergenic
ATGGAGACAATGAGTTTGAA+AGG 0.498812 4.2:-30695211 MS.gene045518:CDS
TGAAGCATTACTTGGTGAGA+TGG 0.500952 4.2:+30695379 None:intergenic
TCACATCGTGGTTTAGGTGA+TGG 0.507950 4.2:+30693395 None:intergenic
TTATGATCAGAAGGAGTTGA+AGG 0.508247 4.2:+30695080 None:intergenic
CTGACCCCAAGAGGGTCAAA+AGG 0.522349 4.2:-30694884 MS.gene045518:intron
TGATGGAGCATTGTCGTCGT+AGG 0.526258 4.2:-30695235 MS.gene045518:CDS
TATGAAGGTCACTGAGTCAC+TGG 0.527916 4.2:+30695268 None:intergenic
CAAGACAAAATCTTCAAAGA+TGG 0.531158 4.2:-30694170 MS.gene045518:intron
CATCATCGATGCTTCTATGA+AGG 0.532117 4.2:+30695253 None:intergenic
TGGTGCTGGTGGTGGCATCA+TGG 0.538097 4.2:+30695130 None:intergenic
CTTCATAGAAGCATCGATGA+TGG 0.538192 4.2:-30695252 MS.gene045518:CDS
AGAAACTCGTCCACCCATGA+AGG 0.540302 4.2:+30695332 None:intergenic
GACTTCTCGTCCACCAGAAG+AGG 0.550382 4.2:-30695308 MS.gene045518:CDS
AGAGGGAGATAGAGAGGCTG+AGG 0.553494 4.2:-30693481 MS.gene045518:CDS
GAGCATTGTCGTCGTAGGGA+TGG 0.556038 4.2:-30695230 MS.gene045518:CDS
ACTTCTCGTCCACCAGAAGA+GGG 0.556593 4.2:-30695307 MS.gene045518:CDS
AGTATCAGTGCTGTCACCAC+GGG 0.561461 4.2:-30694270 MS.gene045518:CDS
CAATCAACAAAACCCTTCAT+GGG 0.563412 4.2:-30695345 MS.gene045518:CDS
TGATGACAAAGAGGAAGATG+AGG 0.565693 4.2:-30695048 MS.gene045518:CDS
TGACAAAGAGGAAGATGAGG+AGG 0.566303 4.2:-30695045 MS.gene045518:CDS
TTAGTGTAGACGAGGTTTCG+AGG 0.573188 4.2:-30695160 MS.gene045518:CDS
CATTGAAGAGGGAGATAGAG+AGG 0.587016 4.2:-30693487 MS.gene045518:CDS
TTGATGCTGTTATGATCAGA+AGG 0.588109 4.2:+30695071 None:intergenic
TTGCATATTTGGATCATCAG+AGG 0.590830 4.2:-30694247 MS.gene045518:CDS
TATGATCAGAAGGAGTTGAA+GGG 0.593074 4.2:+30695081 None:intergenic
CTCATCAAGAAGCATTGAAG+AGG 0.593087 4.2:-30693499 MS.gene045518:CDS
TCTGTGTGCCCCTCTTCTGG+TGG 0.594474 4.2:+30695298 None:intergenic
GACAATGTAGCTGATGGTGC+TGG 0.596193 4.2:+30695116 None:intergenic
GTCCATGTTTAGTGTAGACG+AGG 0.601046 4.2:-30695168 MS.gene045518:CDS
CAGCATCAATGATGACAAAG+AGG 0.602367 4.2:-30695057 MS.gene045518:CDS
GATGGAGCATTGTCGTCGTA+GGG 0.605532 4.2:-30695234 MS.gene045518:CDS
TCAACAAAACCCTTCATGGG+TGG 0.609845 4.2:-30695342 MS.gene045518:CDS
AACCTCGTCTACACTAAACA+TGG 0.622608 4.2:+30695166 None:intergenic
AATGTAGCTGATGGTGCTGG+TGG 0.623330 4.2:+30695119 None:intergenic
AAGTATCAGTGCTGTCACCA+CGG 0.625333 4.2:-30694271 MS.gene045518:CDS
TCATCAAGAAGCATTGAAGA+GGG 0.631177 4.2:-30693498 MS.gene045518:CDS
GAAACTCGTCCACCCATGAA+GGG 0.631276 4.2:+30695333 None:intergenic
CTGCACAAAGATCAAGAGTG+AGG 0.635769 4.2:-30694497 MS.gene045518:CDS
ATTGAAGCATGAATCTGATG+AGG 0.673573 4.2:-30695003 MS.gene045518:CDS
GAATGCAAACAGGAAAATGG+AGG 0.685882 4.2:-30694969 MS.gene045518:CDS
CTTCTCGTCCACCAGAAGAG+GGG 0.695347 4.2:-30695306 MS.gene045518:CDS
CGTGGTTTAGGTGATGGAGA+TGG 0.696148 4.2:+30693401 None:intergenic
TGAGTATCATTATCACATCG+TGG 0.696934 4.2:+30693383 None:intergenic
TTAGATGACAATGTAGCTGA+TGG 0.701045 4.2:+30695110 None:intergenic
TGATCCAAATATGCAACCCG+TGG 0.752305 4.2:+30694254 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATTAAACAATTTTG+AGG + chr4.2:30694851-30694870 None:intergenic 10.0%
!!! TGTTTAATTATTTTTACTAT+AGG - chr4.2:30694857-30694876 MS.gene045518:intron 10.0%
!! GAATGAAAAAACTATATAAT+AGG - chr4.2:30694906-30694925 MS.gene045518:CDS 15.0%
!!! ATCTATAAGTATTATTTTGA+AGG + chr4.2:30695183-30695202 None:intergenic 15.0%
!! CTATATAATAGGCTTATAAA+TGG - chr4.2:30694917-30694936 MS.gene045518:CDS 20.0%
!!! TAATACACATATTTGGTTTT+AGG + chr4.2:30693931-30693950 None:intergenic 20.0%
!!! TATAATGTATTGATGAATGA+AGG - chr4.2:30694450-30694469 MS.gene045518:CDS 20.0%
!!! TATATATTGTTATTGATACG+TGG - chr4.2:30694701-30694720 MS.gene045518:intron 20.0%
! AACCAAATATGTGTATTACA+TGG - chr4.2:30693933-30693952 MS.gene045518:intron 25.0%
! AATGATGAAGATGACAATAA+TGG - chr4.2:30693808-30693827 MS.gene045518:intron 25.0%
! GAAAGTTTAGACAGAATTAT+AGG - chr4.2:30694754-30694773 MS.gene045518:intron 25.0%
!! TTATTAATTCTAGCTAGCTA+TGG - chr4.2:30694016-30694035 MS.gene045518:intron 25.0%
!!! ATCTTTGAAGATTTTGTCTT+GGG + chr4.2:30694578-30694597 None:intergenic 25.0%
AATGGAACAGAGGATAATAA+CGG - chr4.2:30694935-30694954 MS.gene045518:CDS 30.0%
AGCCATGTAATACACATATT+TGG + chr4.2:30693938-30693957 None:intergenic 30.0%
ATACTACATGACAGTGTAAA+AGG + chr4.2:30694634-30694653 None:intergenic 30.0%
CAAGACAAAATCTTCAAAGA+TGG - chr4.2:30694577-30694596 MS.gene045518:intron 30.0%
GGTGAAATGAGAATATGTTA+AGG + chr4.2:30694613-30694632 None:intergenic 30.0%
GTCATTAAGATTACTACTAG+TGG - chr4.2:30695144-30695163 MS.gene045518:CDS 30.0%
TTACATTGAACATGACATGA+TGG - chr4.2:30694336-30694355 MS.gene045518:intron 30.0%
! GAAAAGTTTGAAGCATTACT+TGG + chr4.2:30693379-30693398 None:intergenic 30.0%
!! CATCTTTGAAGATTTTGTCT+TGG + chr4.2:30694579-30694598 None:intergenic 30.0%
!! TGTTCTTGATGTTTTGTTGT+TGG + chr4.2:30695303-30695322 None:intergenic 30.0%
AAAAATTACTGACCCCAAGA+GGG - chr4.2:30693855-30693874 MS.gene045518:intron 35.0%
ACAATCAACAAAACCCTTCA+TGG - chr4.2:30693401-30693420 MS.gene045518:CDS 35.0%
ATGGAGACAATGAGTTTGAA+AGG - chr4.2:30693536-30693555 MS.gene045518:intron 35.0%
ATTGAAGCATGAATCTGATG+AGG - chr4.2:30693744-30693763 MS.gene045518:intron 35.0%
CAATCAACAAAACCCTTCAT+GGG - chr4.2:30693402-30693421 MS.gene045518:CDS 35.0%
CAGAGCAATTATTAGAGAAG+AGG - chr4.2:30695009-30695028 MS.gene045518:CDS 35.0%
GAATCTGATGAGGATGAAAT+TGG - chr4.2:30693754-30693773 MS.gene045518:intron 35.0%
TAGGCTTATAAATGGAACAG+AGG - chr4.2:30694925-30694944 MS.gene045518:CDS 35.0%
TATGATCAGAAGGAGTTGAA+GGG + chr4.2:30693669-30693688 None:intergenic 35.0%
TCACCATCACATGAATGAAA+AGG + chr4.2:30694180-30694199 None:intergenic 35.0%
TCATTATCACATCGTGGTTT+AGG + chr4.2:30695361-30695380 None:intergenic 35.0%
TGAAATTGGTGAATGCAAAC+AGG - chr4.2:30693768-30693787 MS.gene045518:intron 35.0%
TGAGTATCATTATCACATCG+TGG + chr4.2:30695367-30695386 None:intergenic 35.0%
TTAGATGACAATGTAGCTGA+TGG + chr4.2:30693640-30693659 None:intergenic 35.0%
TTATGATCAGAAGGAGTTGA+AGG + chr4.2:30693670-30693689 None:intergenic 35.0%
TTGATGCTGTTATGATCAGA+AGG + chr4.2:30693679-30693698 None:intergenic 35.0%
TTGCATATTTGGATCATCAG+AGG - chr4.2:30694500-30694519 MS.gene045518:CDS 35.0%
! GTTCCTTTTCATTCATGTGA+TGG - chr4.2:30694174-30694193 MS.gene045518:CDS 35.0%
!! TACTTGGTGAGATGGTTTTA+AGG + chr4.2:30693363-30693382 None:intergenic 35.0%
!! TCATCAAGAAGCATTGAAGA+GGG - chr4.2:30695249-30695268 MS.gene045518:CDS 35.0%
!!! CGGAATTAGCTTCTTTTTTG+TGG - chr4.2:30694955-30694974 MS.gene045518:CDS 35.0%
!!! TGAAGGGTTTTGTTGATTGT+TGG + chr4.2:30693401-30693420 None:intergenic 35.0%
AACCTCGTCTACACTAAACA+TGG + chr4.2:30693584-30693603 None:intergenic 40.0%
ACGAAGTGTGACTTCATTAC+AGG - chr4.2:30694299-30694318 MS.gene045518:intron 40.0%
ATTGAAACATGAGCTAGCAG+TGG - chr4.2:30694122-30694141 MS.gene045518:intron 40.0%
CAAAAATTACTGACCCCAAG+AGG - chr4.2:30693854-30693873 MS.gene045518:intron 40.0%
CAGCATCAATGATGACAAAG+AGG - chr4.2:30693690-30693709 MS.gene045518:intron 40.0%
CATCATCGATGCTTCTATGA+AGG + chr4.2:30693497-30693516 None:intergenic 40.0%
GAATGCAAACAGGAAAATGG+AGG - chr4.2:30693778-30693797 MS.gene045518:intron 40.0%
GCAATTGCAAGCTTAGTTAG+TGG + chr4.2:30694824-30694843 None:intergenic 40.0%
GGTGAATGCAAACAGGAAAA+TGG - chr4.2:30693775-30693794 MS.gene045518:intron 40.0%
TGATGACAAAGAGGAAGATG+AGG - chr4.2:30693699-30693718 MS.gene045518:intron 40.0%
TTGTGGAACTTTGCATCGTA+CGG - chr4.2:30694972-30694991 MS.gene045518:CDS 40.0%
! CTCTTGGGGTCAGTAATTTT+TGG + chr4.2:30693856-30693875 None:intergenic 40.0%
! GAAGATTTTGTCTTGGGCTA+GGG + chr4.2:30694572-30694591 None:intergenic 40.0%
! TAGTACCTTTTGACCCTCTT+GGG + chr4.2:30693871-30693890 None:intergenic 40.0%
! TGAAGATTTTGTCTTGGGCT+AGG + chr4.2:30694573-30694592 None:intergenic 40.0%
! TGAAGCATTACTTGGTGAGA+TGG + chr4.2:30693371-30693390 None:intergenic 40.0%
!! CTCATCAAGAAGCATTGAAG+AGG - chr4.2:30695248-30695267 MS.gene045518:CDS 40.0%
!! CTTCATAGAAGCATCGATGA+TGG - chr4.2:30693495-30693514 MS.gene045518:CDS 40.0%
!!! GGTGAGATGGTTTTAAGGTT+AGG + chr4.2:30693358-30693377 None:intergenic 40.0%
AAGTATCAGTGCTGTCACCA+CGG - chr4.2:30694476-30694495 MS.gene045518:CDS 45.0%
CATTGAAGAGGGAGATAGAG+AGG - chr4.2:30695260-30695279 MS.gene045518:CDS 45.0%
CTGCACAAAGATCAAGAGTG+AGG - chr4.2:30694250-30694269 MS.gene045518:CDS 45.0%
GTCCATGTTTAGTGTAGACG+AGG - chr4.2:30693579-30693598 MS.gene045518:intron 45.0%
TATGAAGGTCACTGAGTCAC+TGG + chr4.2:30693482-30693501 None:intergenic 45.0%
TCAACAAAACCCTTCATGGG+TGG - chr4.2:30693405-30693424 MS.gene045518:CDS 45.0%
TCACATCGTGGTTTAGGTGA+TGG + chr4.2:30695355-30695374 None:intergenic 45.0%
TGACAAAGAGGAAGATGAGG+AGG - chr4.2:30693702-30693721 MS.gene045518:intron 45.0%
TGATCCAAATATGCAACCCG+TGG + chr4.2:30694496-30694515 None:intergenic 45.0%
TTAGTGTAGACGAGGTTTCG+AGG - chr4.2:30693587-30693606 MS.gene045518:intron 45.0%
! AGTACCTTTTGACCCTCTTG+GGG + chr4.2:30693870-30693889 None:intergenic 45.0%
! GTAGTACCTTTTGACCCTCT+TGG + chr4.2:30693872-30693891 None:intergenic 45.0%
!! GGGGTCAGTAATTTTTGGAC+TGG + chr4.2:30693851-30693870 None:intergenic 45.0%
!!! ATTTATTTTAAAATTTTTTC+TGG - chr4.2:30694087-30694106 MS.gene045518:intron 5.0%
!!! ATTTTAAAATAAATAAGTAA+AGG + chr4.2:30694081-30694100 None:intergenic 5.0%
ACATGAGCTAGCAGTGGTGA+TGG - chr4.2:30694128-30694147 MS.gene045518:intron 50.0%
ACTTCTCGTCCACCAGAAGA+GGG - chr4.2:30693440-30693459 MS.gene045518:CDS 50.0%
AGAAACTCGTCCACCCATGA+AGG + chr4.2:30693418-30693437 None:intergenic 50.0%
AGTATCAGTGCTGTCACCAC+GGG - chr4.2:30694477-30694496 MS.gene045518:CDS 50.0%
CTAGTTGCAGACACAGCACA+TGG + chr4.2:30695116-30695135 None:intergenic 50.0%
GAAACTCGTCCACCCATGAA+GGG + chr4.2:30693417-30693436 None:intergenic 50.0%
! AATGTAGCTGATGGTGCTGG+TGG + chr4.2:30693631-30693650 None:intergenic 50.0%
! GACAATGTAGCTGATGGTGC+TGG + chr4.2:30693634-30693653 None:intergenic 50.0%
! GTCACCACGGGTTGCATATT+TGG - chr4.2:30694489-30694508 MS.gene045518:CDS 50.0%
!! CGTGGTTTAGGTGATGGAGA+TGG + chr4.2:30695349-30695368 None:intergenic 50.0%
!! GATGGAGCATTGTCGTCGTA+GGG - chr4.2:30693513-30693532 MS.gene045518:intron 50.0%
!! TGATGGAGCATTGTCGTCGT+AGG - chr4.2:30693512-30693531 MS.gene045518:intron 50.0%
AGAGGGAGATAGAGAGGCTG+AGG - chr4.2:30695266-30695285 MS.gene045518:CDS 55.0%
CTGACCCCAAGAGGGTCAAA+AGG - chr4.2:30693863-30693882 MS.gene045518:intron 55.0%
CTTCTCGTCCACCAGAAGAG+GGG - chr4.2:30693441-30693460 MS.gene045518:CDS 55.0%
GACTTCTCGTCCACCAGAAG+AGG - chr4.2:30693439-30693458 MS.gene045518:CDS 55.0%
! AAGAGGGGCACACAGACGTT+CGG - chr4.2:30693456-30693475 MS.gene045518:CDS 55.0%
! GAGCATTGTCGTCGTAGGGA+TGG - chr4.2:30693517-30693536 MS.gene045518:intron 55.0%
ACGTCTGTGTGCCCCTCTTC+TGG + chr4.2:30693455-30693474 None:intergenic 60.0%
TCTGTGTGCCCCTCTTCTGG+TGG + chr4.2:30693452-30693471 None:intergenic 60.0%
!! GTAGCTGATGGTGCTGGTGG+TGG + chr4.2:30693628-30693647 None:intergenic 60.0%
!! TGGTGCTGGTGGTGGCATCA+TGG + chr4.2:30693620-30693639 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 30693352 30695417 30693352 ID=MS.gene045518
chr4.2 mRNA 30693352 30695417 30693352 ID=MS.gene045518.t1;Parent=MS.gene045518
chr4.2 exon 30694885 30695417 30694885 ID=MS.gene045518.t1.exon1;Parent=MS.gene045518.t1
chr4.2 CDS 30694885 30695417 30694885 ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1
chr4.2 exon 30694449 30694539 30694449 ID=MS.gene045518.t1.exon2;Parent=MS.gene045518.t1
chr4.2 CDS 30694449 30694539 30694449 ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1
chr4.2 exon 30694171 30694297 30694171 ID=MS.gene045518.t1.exon3;Parent=MS.gene045518.t1
chr4.2 CDS 30694171 30694297 30694171 ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1
chr4.2 exon 30693352 30693521 30693352 ID=MS.gene045518.t1.exon4;Parent=MS.gene045518.t1
chr4.2 CDS 30693352 30693521 30693352 ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1
Gene Sequence

>MS.gene045518

ATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGGTACTACTCAAACATATTATTCATGTCACACAATTGTCACATTCCTAAAACCAAATATGTGTATTACATGGCTTACTTAATTTGTAGTATTATCAATGTGTGAGCGAGACAATTTAATGTTAATTTGTGTATTATTAATTCTAGCTAGCTATGGAGAACATGTTCTTCATATATAAATATATACATCAGAAGACCTTTACTTATTTATTTTAAAATTTTTTCTGGTGTTATTTTCTGATTGAAACATGAGCTAGCAGTGGTGATGGTGATTATGTAAGAATATATTTCTGTTCCTTTTCATTCATGTGATGGTGATTGTAATTACTGTGTTTGCATATGTATCAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGTGAATTTAATAAACTTACATTGAACATGACATGATGGTAACTTAATTTTATACTAAGCATATACTAATAATTTGATGTGTATAGTAATTAATAATAATATTATGATTATATTTTGTTTTAACTTATTATATAATGTATTGATGAATGAAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGGTATGCTACATCCTTAACATATTCTCATTTCACCTTTTACACTGTCATGTAGTATAAGTTTTCTGATTCATTAATTAATCACTGTTAAGATTTTGTTCTGTATATATATTGTTATTGATACGTGGTTTTATACTTTCAGTATGTCATGTTCAAGAGAAAGTTTAGACAGAATTATAGGAAGAAAGTACAATTTAGTTTATAGAGATGTACTTTTCAATTGTACCACTAACTAAGCTTGCAATTGCATCTCCTCAAAATTGTTTAATTATTTTTACTATAGGAGAGTTATTAAATATTAATTATTAATGAATGAAAAAACTATATAATAGGCTTATAAATGGAACAGAGGATAATAACGGAATTAGCTTCTTTTTTGTGGAACTTTGCATCGTACGGCACATGAGTTGAATCAGAGCAATTATTAGAGAAGAGGACAGATTGATATTGATTTTAGTAAAAGCACTTGCATGCAGTTGCACTGCACACATATTAAAATGCTGTATGTCTGAGATAACCATGTGCTGTGTCTGCAACTAGTAGTTATAGTCATTAAGATTACTACTAGTGGTACTACTTAAAAACCTTCAAAATAATACTTATAGATTGATTATTAATATTATACATGTTACAATGAATATTAATAATGCAGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA
Protein sequence

>MS.gene045518.t1

MPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV