AlfalfaGEDB | MS.gene045518

M. sativa cultivar XinJiangDaYe / MS.gene045518

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045518.t1	XP_003607550.1	96.1	306	9	1	1	306	26	328	1.70E-71	279.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045518.t1	F4IN23	63.1	206	68	2	20	225	42	239	1.5e-31	138.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045518.t1	G8A005	96.1	306	9	1	1	306	26	328	1.2e-71	279.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene045518.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045518.t1	MTR_4g079500	98.366	306	2	1	1	306	26	328	0.0	615
MS.gene045518.t1	MTR_2g090900	63.810	315	80	13	6	306	29	323	8.22e-107	314
MS.gene045518.t1	MTR_2g090900	63.323	319	81	14	1	305	26	322	6.61e-106	312
MS.gene045518.t1	MTR_2g078370	43.860	171	74	10	18	178	56	214	1.23e-23	96.7
MS.gene045518.t1	MTR_8g088650	52.941	102	43	1	166	267	228	324	1.90e-23	99.4
MS.gene045518.t1	MTR_2g078360	60.000	75	20	2	226	291	1	74	2.61e-22	89.4
MS.gene045518.t1	MTR_5g075390	48.387	93	48	0	172	264	159	251	5.45e-20	89.4
MS.gene045518.t1	MTR_4g072090	37.589	141	65	2	149	266	314	454	5.98e-20	90.1
MS.gene045518.t1	MTR_2g099050	46.000	100	54	0	170	269	219	318	2.22e-19	88.2
MS.gene045518.t1	MTR_3g005230	49.425	87	44	0	181	267	136	222	3.61e-19	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045518.t1	AT3G58120	56.592	311	90	10	19	306	41	329	1.33e-94	283
MS.gene045518.t1	AT2G42380	54.485	301	101	8	20	306	42	320	2.90e-90	272
MS.gene045518.t1	AT2G42380	50.498	301	102	9	20	306	42	309	5.75e-79	243
MS.gene045518.t1	AT3G58120	58.167	251	77	7	19	251	41	281	6.21e-78	239
MS.gene045518.t1	AT2G42380	55.417	240	83	5	20	251	42	265	1.03e-72	225
MS.gene045518.t1	AT2G42380	47.264	201	82	5	20	212	42	226	8.16e-43	147
MS.gene045518.t1	AT2G42380	47.264	201	82	5	20	212	42	226	8.16e-43	147
MS.gene045518.t1	AT1G58110	47.321	112	53	2	156	267	219	324	4.11e-22	95.5
MS.gene045518.t1	AT1G58110	47.321	112	53	2	156	267	219	324	4.11e-22	95.5
MS.gene045518.t1	AT1G43700	49.485	97	49	0	170	266	192	288	1.23e-20	90.9

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Find 57 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCGTCTACACTAAACA+TGG	0.622608	4.2:+30695166	None:intergenic
AAGAGGGGCACACAGACGTT+CGG	0.489835	4.2:-30695291	MS.gene045518:CDS
AAGTATCAGTGCTGTCACCA+CGG	0.625333	4.2:-30694271	MS.gene045518:CDS
AATGATGAAGATGACAATAA+TGG	0.401593	4.2:-30694939	MS.gene045518:CDS
AATGTAGCTGATGGTGCTGG+TGG	0.623330	4.2:+30695119	None:intergenic
ACAATCAACAAAACCCTTCA+TGG	0.391610	4.2:-30695346	MS.gene045518:CDS
ACGAAGTGTGACTTCATTAC+AGG	0.377047	4.2:-30694448	MS.gene045518:intron
ACGTCTGTGTGCCCCTCTTC+TGG	0.291136	4.2:+30695295	None:intergenic
ACTTCTCGTCCACCAGAAGA+GGG	0.556593	4.2:-30695307	MS.gene045518:CDS
AGAAACTCGTCCACCCATGA+AGG	0.540302	4.2:+30695332	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAACAGAGGATAATAA+CGG	-	chr4.2:30694935-30694954	MS.gene045518:CDS	30.0%
AGCCATGTAATACACATATT+TGG	+	chr4.2:30693938-30693957	None:intergenic	30.0%
ATACTACATGACAGTGTAAA+AGG	+	chr4.2:30694634-30694653	None:intergenic	30.0%
CAAGACAAAATCTTCAAAGA+TGG	-	chr4.2:30694577-30694596	MS.gene045518:intron	30.0%
GGTGAAATGAGAATATGTTA+AGG	+	chr4.2:30694613-30694632	None:intergenic	30.0%
GTCATTAAGATTACTACTAG+TGG	-	chr4.2:30695144-30695163	MS.gene045518:CDS	30.0%
TTACATTGAACATGACATGA+TGG	-	chr4.2:30694336-30694355	MS.gene045518:intron	30.0%
AAAAATTACTGACCCCAAGA+GGG	-	chr4.2:30693855-30693874	MS.gene045518:intron	35.0%
ACAATCAACAAAACCCTTCA+TGG	-	chr4.2:30693401-30693420	MS.gene045518:CDS	35.0%
ATGGAGACAATGAGTTTGAA+AGG	-	chr4.2:30693536-30693555	MS.gene045518:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	30693352	30695417	30693352	ID=MS.gene045518
chr4.2	mRNA	30693352	30695417	30693352	ID=MS.gene045518.t1;Parent=MS.gene045518
chr4.2	exon	30694885	30695417	30694885	ID=MS.gene045518.t1.exon1;Parent=MS.gene045518.t1
chr4.2	CDS	30694885	30695417	30694885	ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1
chr4.2	exon	30694449	30694539	30694449	ID=MS.gene045518.t1.exon2;Parent=MS.gene045518.t1
chr4.2	CDS	30694449	30694539	30694449	ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1
chr4.2	exon	30694171	30694297	30694171	ID=MS.gene045518.t1.exon3;Parent=MS.gene045518.t1
chr4.2	CDS	30694171	30694297	30694171	ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1
chr4.2	exon	30693352	30693521	30693352	ID=MS.gene045518.t1.exon4;Parent=MS.gene045518.t1
chr4.2	CDS	30693352	30693521	30693352	ID=cds.MS.gene045518.t1;Parent=MS.gene045518.t1

Gene Sequence

>MS.gene045518

ATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGGTACTACTCAAACATATTATTCATGTCACACAATTGTCACATTCCTAAAACCAAATATGTGTATTACATGGCTTACTTAATTTGTAGTATTATCAATGTGTGAGCGAGACAATTTAATGTTAATTTGTGTATTATTAATTCTAGCTAGCTATGGAGAACATGTTCTTCATATATAAATATATACATCAGAAGACCTTTACTTATTTATTTTAAAATTTTTTCTGGTGTTATTTTCTGATTGAAACATGAGCTAGCAGTGGTGATGGTGATTATGTAAGAATATATTTCTGTTCCTTTTCATTCATGTGATGGTGATTGTAATTACTGTGTTTGCATATGTATCAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGTGAATTTAATAAACTTACATTGAACATGACATGATGGTAACTTAATTTTATACTAAGCATATACTAATAATTTGATGTGTATAGTAATTAATAATAATATTATGATTATATTTTGTTTTAACTTATTATATAATGTATTGATGAATGAAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGGTATGCTACATCCTTAACATATTCTCATTTCACCTTTTACACTGTCATGTAGTATAAGTTTTCTGATTCATTAATTAATCACTGTTAAGATTTTGTTCTGTATATATATTGTTATTGATACGTGGTTTTATACTTTCAGTATGTCATGTTCAAGAGAAAGTTTAGACAGAATTATAGGAAGAAAGTACAATTTAGTTTATAGAGATGTACTTTTCAATTGTACCACTAACTAAGCTTGCAATTGCATCTCCTCAAAATTGTTTAATTATTTTTACTATAGGAGAGTTATTAAATATTAATTATTAATGAATGAAAAAACTATATAATAGGCTTATAAATGGAACAGAGGATAATAACGGAATTAGCTTCTTTTTTGTGGAACTTTGCATCGTACGGCACATGAGTTGAATCAGAGCAATTATTAGAGAAGAGGACAGATTGATATTGATTTTAGTAAAAGCACTTGCATGCAGTTGCACTGCACACATATTAAAATGCTGTATGTCTGAGATAACCATGTGCTGTGTCTGCAACTAGTAGTTATAGTCATTAAGATTACTACTAGTGGTACTACTTAAAAACCTTCAAAATAATACTTATAGATTGATTATTAATATTATACATGTTACAATGAATATTAATAATGCAGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA

Protein sequence

>MS.gene045518.t1

MPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV